Citrus Sinensis ID: 045598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Secondary Structure (PSIPRED)
cEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEEccHHcccccccccEEEcccccccccccHHHHccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHcccHHHHHcccccEEEEEccEEEEEcccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHcccccccEEEcccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccEEEEEccccccccccHHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEHcccccccccccccHHHcccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHHccccccEEEcccccccccccccHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
tlslvndslggpfrlpihshkrlgmldisnnnfrghipvEIADVLPSLYAFnnsmnaldgsipssfgnmkflQFLDlsnnhltgeipehlavgCVNLRFLALSNnnlqghmfsrnfnltnlkwlqlegsrfvgeipqslskcssleglylnnnslsgkiprwlgnltrlqciimpnnhlegpipvefcQLDLLQildisdnnisgslpscfhplsikqvhLSKNmlhgqlkrgtffncsslvtldlsynrlngsisdWVDGLSQLSHLILghnnlegevpiQLCELnqlqlldlsnnnlhgpipscfdnttlhEKKQIREKFEFTTKNIAYIYQGKVLSLLSgldlscnkligpiplqignltrIQTLNlshnnltgsipstfsnlkyvesldlsnnklngkiphqlVELKTLEVFSVAYNNlsgeipewTAQFATfnessyegntflcglplpicrspatmseasignerddnlidmnsFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFvvdnliptrfch
Flexible Loop (DISEMBL)
tlslvndslggpfrlpihshkRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Low Complexity Region (SEG)
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCqldllqildiSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIqlcelnqlqlldlsnnnlHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Disordered region (IsUnstruct)
***********PFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA***********DDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFC*
Disordered Region (DISOPRED)
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI******TTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG****************************NSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Disordered Region (DISEMBL)
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Disordered Region (DISPRO)
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPT*FC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVVDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	536	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.805	0.368	0.344	1e-55
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.886	0.415	0.330	4e-55
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.934	0.429	0.309	8e-55
Q9LJF3	1164	Receptor-like protein kin	no	no	0.949	0.437	0.316	1e-52
Q9LHP4	1141	Receptor-like protein kin	no	no	0.822	0.386	0.336	3e-52
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.826	0.437	0.343	3e-52
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.792	0.416	0.331	2e-51
Q9C9H7	847	Receptor-like protein 12	no	no	0.938	0.593	0.318	2e-51
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.932	0.454	0.318	4e-51
O82318	960	Probably inactive leucine	no	no	0.854	0.477	0.320	2e-50

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 169/491 (34%), Positives = 251/491 (51%), Gaps = 59/491 (12%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L+L +++  G F   I + + L +L +  NN  G +P ++  +L +L   +   N L G 
Sbjct: 341 LTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGP 399

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPE--------HLAVG--------------CVNLRF 99
           IPSS  N   L+ LDLS+N +TGEIP          +++G              C NL  
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLET 459

Query: 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159
           L++++NNL G +      L  L+ LQ+  +   G IP+ +     L  LYL++N  +G+I
Sbjct: 460 LSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRI 519

Query: 160 PRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQ 218
           PR + NLT LQ + M +N LEGPIP E   + LL +LD+S+N  SG +P+ F  L S+  
Sbjct: 520 PREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTY 579

Query: 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI-SDWVDGLSQLS-HLILGHNNLE 276
           + L  N  +G +   +  + S L T D+S N L G+I  + +  L  +  +L   +N L 
Sbjct: 580 LSLQGNKFNGSIP-ASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLT 638

Query: 277 GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGK 336
           G +P +L +L  +Q +DLSNN   G IP      +L   K +     FT           
Sbjct: 639 GTIPKELGKLEMVQEIDLSNNLFSGSIPR-----SLQACKNV-----FT----------- 677

Query: 337 VLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
                  LD S N L G IP ++   +  I +LNLS N+ +G IP +F N+ ++ SLDLS
Sbjct: 678 -------LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLS 730

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI 455
           +N L G+IP  L  L TL+   +A NNL G +PE +  F   N S   GNT LCG   P+
Sbjct: 731 SNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL 789

Query: 456 CRSPATMSEAS 466
              P T+ + S
Sbjct: 790 --KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  216 bits (550), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 175/529 (33%), Positives = 249/529 (47%), Gaps = 54/529 (10%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           K L  LD+S+N   G IP EI D   SL     S N   G IP S  +  +LQ LDLSNN
Sbjct: 252 KLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNN 311

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
           +++G  P  +     +L+ L LSNN + G   +      +L+      +RF G IP  L 
Sbjct: 312 NISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLC 371

Query: 141 K-CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDIS 199
              +SLE L L +N ++G+IP  +   + L+ I +  N+L G IP E   L  L+     
Sbjct: 372 PGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAW 431

Query: 200 DNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
            NNI+G +P     L  +K + L+ N L G++    FFNCS++  +  + NRL G +   
Sbjct: 432 YNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP-EFFNCSNIEWVSFTSNRLTGEVPKD 490

Query: 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-------------- 304
              LS+L+ L LG+NN  GE+P +L +   L  LDL+ N+L G IP              
Sbjct: 491 FGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSG 550

Query: 305 ---------------SCFDNTTLHEKKQIREKF-----EFTTKNIAYIYQGKVLSLLSG- 343
                          SC     L E   IR +         + +   +Y G +LSL +  
Sbjct: 551 LLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPILSLFTRY 610

Query: 344 -----LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
                LDLS N+L G IP +IG +  +Q L LSHN L+G IP T   LK +   D S+N+
Sbjct: 611 QTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNR 670

Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS 458
           L G+IP     L  L    ++ N L+G IP+   Q +T   + Y  N  LCG+PLP C++
Sbjct: 671 LQGQIPESFSNLSFLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKN 729

Query: 459 -----PATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYV 502
                PA   E              NS  +      V++  A+V IL V
Sbjct: 730 GNNQLPAGTEEGKRAKHGTRAASWANSIVLG-----VLISAASVCILIV 773

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  215 bits (547), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 170/549 (30%), Positives = 259/549 (47%), Gaps = 48/549 (8%)

Query: 19  SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
           S + L  L +++N   G IP E++ +  +L   + S N   G +PS F    +LQ L+L 
Sbjct: 275 SFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLG 334

Query: 79  NNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ- 137
           NN+L+G+    +      + +L ++ NN+ G +     N +NL+ L L  + F G +P  
Sbjct: 335 NNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSG 394

Query: 138 --SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
             SL     LE + + NN LSG +P  LG    L+ I +  N L GPIP E   L  L  
Sbjct: 395 FCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSD 454

Query: 196 LDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           L +  NN++G++P   C    +++ + L+ N+L G +   +   C++++ + LS NRL G
Sbjct: 455 LVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTG 513

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS-------- 305
            I   +  LS+L+ L LG+N+L G VP QL     L  LDL++NNL G +P         
Sbjct: 514 KIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGL 573

Query: 306 ---------------------CFDNTTLHEKKQIR-EKFE----FTTKNIAYIYQGKVLS 339
                                C     L E + IR E+ E      +     IY G  + 
Sbjct: 574 VMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMY 633

Query: 340 LLSG------LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
             S        D+S N + G IP   GN+  +Q LNL HN +TG+IP +F  LK +  LD
Sbjct: 634 TFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLD 693

Query: 394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453
           LS+N L G +P  L  L  L    V+ NNL+G IP +  Q  TF  S Y  N+ LCG+PL
Sbjct: 694 LSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPL 752

Query: 454 PICRSPATMSEASIGNERDDNLIDMNSFFITFT-TSYVIVIFATVIILYVNSYWRRRWFY 512
             C S       S  + +   +       I F+   +V+++ A   +  V    ++R  Y
Sbjct: 753 RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKY 812

Query: 513 FVEMWITSS 521
              +  + S
Sbjct: 813 IESLPTSGS 821

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 178/562 (31%), Positives = 268/562 (47%), Gaps = 53/562 (9%)

Query: 1   TLSLVNDSLGGPFRLPIHSH----KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMN 56
           TL+L  +SL G  ++P   +    + L  L +++N + G IP E++ +  +L   + S N
Sbjct: 255 TLNLSRNSLIG--KIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGN 312

Query: 57  ALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF 116
           +L G +P SF +   LQ L+L NN L+G+    +      +  L L  NN+ G +     
Sbjct: 313 SLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLT 372

Query: 117 NLTNLKWLQLEGSRFVGEIPQ---SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCII 173
           N +NL+ L L  + F GE+P    SL   S LE L + NN LSG +P  LG    L+ I 
Sbjct: 373 NCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKTID 432

Query: 174 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLK 231
           +  N L G IP E   L  L  L +  NN++G +P   C    +++ + L+ N+L G L 
Sbjct: 433 LSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGSLP 492

Query: 232 RGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQL 291
             +   C++++ + LS N L G I   +  L +L+ L LG+N+L G +P +L     L  
Sbjct: 493 E-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLIW 551

Query: 292 LDLSNNNLHGPIPS-----------------------------CFDNTTLHEKKQIR-EK 321
           LDL++NNL G +P                              C     L E + IR E+
Sbjct: 552 LDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAER 611

Query: 322 FE----FTTKNIAYIYQGKVLSLLSG------LDLSCNKLIGPIPLQIGNLTRIQTLNLS 371
            E      +     IY G  + + S       LDLS N + G IPL  G +  +Q LNL 
Sbjct: 612 LEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLG 671

Query: 372 HNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431
           HN LTG+IP +F  LK +  LDLS+N L G +P  L  L  L    V+ NNL+G IP + 
Sbjct: 672 HNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FG 730

Query: 432 AQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVI 491
            Q  TF  + Y  N+ LCG+PLP C S +  + +    ++      M++  +      V+
Sbjct: 731 GQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVFSFMCIVM 790

Query: 492 VIFATVIILYVNSYWRRRWFYF 513
           +I A      V    ++R  Y 
Sbjct: 791 LIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 234/458 (51%), Gaps = 17/458 (3%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADV--LPSLYAFNNSMNAL 58
            L L ++ L G     +   + L  L +++N   G IP +I+    L SL  F+N    L
Sbjct: 133 VLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDN---LL 189

Query: 59  DGSIPSSFGNMKFLQFLDLS-NNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN 117
            GSIP+  G +  L+ + +  N  ++G+IP  +   C NL  L L+  ++ G++ S    
Sbjct: 190 TGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIG-DCSNLTVLGLAETSVSGNLPSSLGK 248

Query: 118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177
           L  L+ L +  +   GEIP  L  CS L  L+L  NSLSG IPR +G LT+L+ + +  N
Sbjct: 249 LKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQN 308

Query: 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFF 236
            L G IP E      L+++D+S N +SGS+PS    LS +++  +S N   G +   T  
Sbjct: 309 SLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPT-TIS 367

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
           NCSSLV L L  N+++G I   +  L++L+      N LEG +P  L +   LQ LDLS 
Sbjct: 368 NCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSR 427

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIGP 354
           N+L G IPS      L   + + +    +     +I Q  G   SL+  L L  N++ G 
Sbjct: 428 NSLTGTIPS-----GLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVR-LRLGFNRITGE 481

Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLE 414
           IP  IG+L +I  L+ S N L G +P    +   ++ +DLSNN L G +P+ +  L  L+
Sbjct: 482 IPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQ 541

Query: 415 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452
           V  V+ N  SG+IP    +  + N+     N F   +P
Sbjct: 542 VLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIP 579

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 156/454 (34%), Positives = 226/454 (49%), Gaps = 11/454 (2%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           ++L  L +S NN  G +P  +   LPSL       N   G IP  FGN+  L++LDL+  
Sbjct: 188 QKLRFLGLSGNNLTGELP-SVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIG 246

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
            L+GEIP  L     +L  L L  NN  G +     ++T LK L    +   GEIP  ++
Sbjct: 247 KLSGEIPSELG-KLKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEIT 305

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
           K  +L+ L L  N LSG IP  + +L +LQ + + NN L G +P +  +   LQ LD+S 
Sbjct: 306 KLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSS 365

Query: 201 NNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
           N+ SG +PS   +  ++ ++ L  N   GQ+   T   C SLV + +  N LNGSI    
Sbjct: 366 NSFSGEIPSTLCNKGNLTKLILFNNTFTGQIP-ATLSTCQSLVRVRMQNNLLNGSIPIGF 424

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
             L +L  L L  N L G +P  + +   L  +D S N +   +PS     ++H  +   
Sbjct: 425 GKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTI--LSIHNLQAFL 482

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
               F +  +   +Q      LS LDLS N L G IP  I +  ++ +LNL +NNLTG I
Sbjct: 483 VADNFISGEVPDQFQD--CPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEI 540

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439
           P   + +  +  LDLSNN L G +P  +     LE+ +V+YN L+G +P       T N 
Sbjct: 541 PRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVP-INGFLKTINP 599

Query: 440 SSYEGNTFLCGLPLPICRS--PATMSEASIGNER 471
               GN+ LCG  LP C     AT S +S+  +R
Sbjct: 600 DDLRGNSGLCGGVLPPCSKFQRATSSHSSLHGKR 633

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 237/488 (48%), Gaps = 63/488 (12%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
           L +L++  N+F G IP  + + LP +   + +MN  DGSIP   GN   +++L L++N+L
Sbjct: 159 LRVLNVYENSFHGLIPASLCNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNL 218

Query: 83  TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
           +G IP+ L     NL  LAL NN L G + S+   L+NL  L +  ++F G+IP    + 
Sbjct: 219 SGSIPQEL-FQLSNLSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLEL 277

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 202
           + L      +N  +G++PR L N   +  + + NN L G I +    +  L  LD++ N+
Sbjct: 278 NKLWYFSAQSNLFNGEMPRSLSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNS 337

Query: 203 ISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFN------------------------ 237
            SGS+PS   + L +K ++ +K     Q+   +F N                        
Sbjct: 338 FSGSIPSNLPNCLRLKTINFAKIKFIAQIPE-SFKNFQSLTSLSFSNSSIQNISSALEIL 396

Query: 238 --CSSLVTLDLSYN-------------------------RLNGSISDWVDGLSQLSHLIL 270
             C +L TL L+ N                         +L G++  W+     L  L L
Sbjct: 397 QHCQNLKTLVLTLNFQKEELPSVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDL 456

Query: 271 GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN-TTLHEKKQIREK-------F 322
             N L G +P  L  LN L  LDLSNN   G IP    +  +L  K+   E+       F
Sbjct: 457 SWNQLSGTIPPWLGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKENAVEEPSPDFPFF 516

Query: 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPST 382
           +    N   +   +  S    +DLS N L G I  + G+L ++  LNL +NNL+G+IP+ 
Sbjct: 517 KKKNTNAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPAN 576

Query: 383 FSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY 442
            S +  +E LDLS+N L+G IP  LV+L  L  FSVAYN LSG IP    QF TF  SS+
Sbjct: 577 LSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPT-GVQFQTFPNSSF 635

Query: 443 EGNTFLCG 450
           EGN  LCG
Sbjct: 636 EGNQGLCG 643

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 256/540 (47%), Gaps = 37/540 (6%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L N +L G     + +   L ++++  N F G IP  I + L  L     + N L G 
Sbjct: 115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGN-LNQLRHLILANNVLTGE 173

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPSS GN+  L  L+L +N L G+IP+ +      LR L+L++NNL G + S   NL+NL
Sbjct: 174 IPSSLGNLSRLVNLELFSNRLVGKIPDSIG-DLKQLRNLSLASNNLIGEIPSSLGNLSNL 232

Query: 122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181
             L L  ++ VGE+P S+     L  +   NNSLSG IP    NLT+L   ++ +N+   
Sbjct: 233 VHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTS 292

Query: 182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSS 240
             P +      L+  D+S N+ SG  P     + S++ ++L +N   G ++     + + 
Sbjct: 293 TFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTK 352

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           L  L L  NRL+G I + +  L  L  L + HNN  G +P  + +L  L  LDLS NNL 
Sbjct: 353 LQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLE 412

Query: 301 GPIPSC-FDNTTLHEKKQIREKFEFTTKNIAYI---------YQGKV------LSLLSGL 344
           G +P+C +   T+         FE T++  A I         +QG +      LS L  L
Sbjct: 413 GEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFL 472

Query: 345 DLSCNKLIGPIPLQIGNLT-RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
           DLS N   G IP  I N +  I+ LNL  NN +G++P  FS    + SLD+S+N+L GK 
Sbjct: 473 DLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKF 532

Query: 404 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMS 463
           P  L+  K LE+ +V  N +    P W     + +  +   N F           P    
Sbjct: 533 PKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFY---------GPLYHR 583

Query: 464 EASIGNERDDNLIDM--NSFFITFTTSYV-----IVIFATVIILYVNSYWRRRWFYFVEM 516
            ASIG +    +ID+  N+F  T    Y      +      +  Y+  +WR    Y+ EM
Sbjct: 584 HASIGFQ-SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEM 642

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  202 bits (515), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 180/566 (31%), Positives = 265/566 (46%), Gaps = 66/566 (11%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADV--LPSLYAFNNSMNALD 59
           L L  + L G     + +  RL +L +  N F G IP EI  +  +  LY + N    L 
Sbjct: 240 LILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQ---LT 296

Query: 60  GSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLT 119
           G IP   GN+     +D S N LTG IP+      +NL+ L L  N L G +      LT
Sbjct: 297 GEIPREIGNLIDAAEIDFSENQLTGFIPKEFG-HILNLKLLHLFENILLGPIPRELGELT 355

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179
            L+ L L  +R  G IPQ L     L  L L +N L GKIP  +G  +    + M  N L
Sbjct: 356 LLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSL 415

Query: 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNC 238
            GPIP  FC+   L +L +  N +SG++P       S+ ++ L  N L G L     FN 
Sbjct: 416 SGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNL 474

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
            +L  L+L  N L+G+IS  +  L  L  L L +NN  GE+P ++  L ++   ++S+N 
Sbjct: 475 QNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQ 534

Query: 299 LHGPIPSCFDNTTLHEKKQIR-EKFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGPIP 356
           L G IP    +    ++  +   KF        YI Q    L  L  L LS N+L G IP
Sbjct: 535 LTGHIPKELGSCVTIQRLDLSGNKFS------GYIAQELGQLVYLEILRLSDNRLTGEIP 588

Query: 357 LQIGNLTRIQ-------------------------TLNLSHNNLTGSIPSTFSNLKYVES 391
              G+LTR+                          +LN+SHNNL+G+IP +  NL+ +E 
Sbjct: 589 HSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEI 648

Query: 392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL 451
           L L++NKL+G+IP  +  L +L + +++ NNL G +P+ TA F   + S++ GN  LC  
Sbjct: 649 LYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNS 707

Query: 452 PLPICRSPATMSEASI-----GNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYW 506
               C+     S++ +     G++R   L           T   IVI +  +I ++   W
Sbjct: 708 QRSHCQPLVPHSDSKLNWLINGSQRQKIL-----------TITCIVIGSVFLITFLGLCW 756

Query: 507 --RRRWFYFVEMW------ITSSYYF 524
             +RR   FV +       +  SYYF
Sbjct: 757 TIKRREPAFVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  201 bits (510), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 172/537 (32%), Positives = 258/537 (48%), Gaps = 79/537 (14%)

Query: 1   TLSLVNDSLGGPFRLPIH--SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNAL 58
           T++L N++L GP    I   S   L  L++SNNNF G IP      LP+LY  + S N  
Sbjct: 101 TINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIP---RGFLPNLYTLDLSNNMF 157

Query: 59  DGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL 118
            G I +  G    L+ LDL  N LTG +P +L      L FL L++N L G +      +
Sbjct: 158 TGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLG-NLSRLEFLTLASNQLTGGVPVELGKM 216

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
            NLKW+ L  +   GEIP  +   SSL  L L  N+LSG IP  LG+L +L+ + +  N 
Sbjct: 217 KNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFLYQNK 276

Query: 179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGT--- 234
           L G IP     L  L  LD SDN++SG +P     + S++ +HL  N L G++  G    
Sbjct: 277 LSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEGVTSL 336

Query: 235 --------------------FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN 274
                                   ++L  LDLS N L G + D +     L+ LIL  N+
Sbjct: 337 PRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNS 396

Query: 275 LEGEVP--IQLCE-------------------LNQLQL---LDLSNNNLHGPIPSC---- 306
           L+ ++P  + +C+                     +LQL   LDLSNNNL G I +     
Sbjct: 397 LDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNINTWDMPQ 456

Query: 307 -----------FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL--LSGLDLSCNKLIG 353
                      F       + +  +K + +   I+ +    +++   +  LDLS N++ G
Sbjct: 457 LEMLDLSVNKFFGELPDFSRSKRLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITG 516

Query: 354 PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
            IP ++ +   +  L+LSHNN TG IPS+F+  + +  LDLS N+L+G+IP  L  +++L
Sbjct: 517 VIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESL 576

Query: 414 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC------GL-PLPICRSPATMS 463
              ++++N L G +P +T  F   N ++ EGN  LC      GL P  + R  +T S
Sbjct: 577 VQVNISHNLLHGSLP-FTGAFLAINATAVEGNIDLCSENSASGLRPCKVVRKRSTKS 632

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
255581263	912	serine-threonine protein kinase, plant-t	0.962	0.565	0.529	1e-142
224073452	710	predicted protein [Populus trichocarpa]	0.970	0.732	0.468	1e-123
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.970	0.355	0.462	1e-123
224114135	664	predicted protein [Populus trichocarpa]	0.970	0.783	0.458	1e-122
224073382	1309	predicted protein [Populus trichocarpa]	0.970	0.397	0.463	1e-121
224111804	663	predicted protein [Populus trichocarpa]	0.970	0.784	0.458	1e-120
224142481	781	predicted protein [Populus trichocarpa]	0.949	0.651	0.455	1e-119
224134891	953	predicted protein [Populus trichocarpa]	0.951	0.535	0.452	1e-119
224104257	675	predicted protein [Populus trichocarpa]	0.970	0.770	0.45	1e-118
224073436	1014	predicted protein [Populus trichocarpa]	0.970	0.512	0.45	1e-118

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/536 (52%), Positives = 357/536 (66%), Gaps = 20/536 (3%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L LVN+SL G  +LP+H H  L  LDISNN+   HIP+EI   LP L   N S N  DGS
Sbjct: 379 LDLVNNSLSGHLQLPLHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGS 438

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPSSFGNM  L+ LDLSNN L+G IPEHLA GC +L  L LSNN+LQG MFS+ FNLTNL
Sbjct: 439 IPSSFGNMNSLRILDLSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNL 498

Query: 122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181
            WL+L+ + F G IP+SLSK S+L  + L++N LSG IP W+GNL+ LQ +I+ NN L+G
Sbjct: 499 WWLELDKNHFSGRIPKSLSK-SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKG 557

Query: 182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSL 241
           PIPVEFCQL  L++LD+++N++SG LPSC  P SI  VHLS+NM+ G      F     L
Sbjct: 558 PIPVEFCQLHYLEVLDLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFL 616

Query: 242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301
           VTLDLS NR+ G I   + G++ L  L L  N  +GE+P Q+C L QL L+ L++NNL G
Sbjct: 617 VTLDLSSNRITGRIPTLIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSG 676

Query: 302 PIPSCFD---NTTLHEKKQ------------IREKFEFTTKNIAYIYQGKVLSLLSGLDL 346
            IPSC     + +L                 +R  + FTTK  +Y YQGK+LS +SG+D 
Sbjct: 677 SIPSCLQLDQSDSLAPDVPPVPNPLNPYYLPVRPMY-FTTKRRSYSYQGKILSYISGIDF 735

Query: 347 SCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406
           SCNKL G IP ++GN + I +LNLS+N  TG IPSTFSNLK +ESLDLS N LNG IP Q
Sbjct: 736 SCNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQ 795

Query: 407 LVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEAS 466
           L+ELK L  FSVA+NNL G+ P+ T QFATF  SSYEGN  LCGLPLP   +    S A 
Sbjct: 796 LLELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAP 855

Query: 467 IGNERDD--NLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITS 520
             +  D+  N +DMN+F+ +F  SY  VI    ++LY+N  WRR WF FV++ I+S
Sbjct: 856 RASAMDEESNFLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/570 (46%), Positives = 339/570 (59%), Gaps = 50/570 (8%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L ++S  G  +L  H H  +  LDISNNN  G IP +I  + P+L+    + N   G 
Sbjct: 135 LYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFPNLHTLRMAKNGFTGC 194

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPS  GN+  L FLDLSNN L+    E L    V    L LSNNNL G + +  FN + L
Sbjct: 195 IPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNNLGGKIPTSVFNSSRL 250

Query: 122 KWLQLEGSRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
            +L L G+ F G+I    L + +    L L+NN  SG +PR   N + L  I +  NH +
Sbjct: 251 NFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVNFSILGVIDLSGNHFK 310

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
           GPIP +FC+ D L+ LD+S+NN+SG +PSCF P  I  VHLSKN L G L    FFN S 
Sbjct: 311 GPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLSGPLTYA-FFNSSY 369

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           LVT+DL  N   GSI +W+  LS LS L+L  N+ +GE+PIQLC L QL +LD+S+N L 
Sbjct: 370 LVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCLLEQLSILDVSHNQLS 429

Query: 301 GPIPSCFDNTTLH--EKKQI---------------------------------------- 318
           GP+PSC  N T    +KK I                                        
Sbjct: 430 GPLPSCLGNLTFKKSDKKAILEVAYGFISESIEKAYYEIMGPPLVDSVDNLRNFFLFNFT 489

Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
            E  EFTTKN+ Y Y+GKVL+ + G+DLS N  IG IP + GNL++I ++NLSHNNLTGS
Sbjct: 490 EEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLSKILSVNLSHNNLTGS 549

Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 438
           IP+TFSNL ++ESLDLS N LNG IP Q  E+ TLEVFSVA+NNLSG+ PE   QF TF+
Sbjct: 550 IPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNLSGKTPERIYQFGTFD 609

Query: 439 ESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDMNSFFITFTTSYVIVIFAT 496
           ES YEGN FLCG PLP  C   A +S+    +E+ DD  IDM  F+I+F   Y +V+   
Sbjct: 610 ESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTI 669

Query: 497 VIILYVNSYWRRRWFYFVEMWITSSYYFVV 526
             +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 670 AAVLYINPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 261/564 (46%), Positives = 354/564 (62%), Gaps = 44/564 (7%)

Query: 2    LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
            L+L N+SL G F LP   +     +DISNN  +G +P  I+  LP+L   N S N+ +GS
Sbjct: 898  LNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGS 957

Query: 62   IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
            IPS FG M+ L FLDLSNN  TG IPE LA+GC +L +L LS N+L G MF R  NL +L
Sbjct: 958  IPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSL 1016

Query: 122  KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181
            + L+L+ + F G+IP  LS  S LE LY+++NS+SGK+P W+GN++ L  ++MPNN LEG
Sbjct: 1017 RHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEG 1075

Query: 182  PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSL 241
            PIPVEFC LD L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F     L
Sbjct: 1076 PIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDL 1134

Query: 242  VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301
             TLD+  N L+G I DW+   S LS L+L  N+ +G++P QLC+L+++ +LDLS N+L G
Sbjct: 1135 ATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSG 1194

Query: 302  PIPSCFD------------------------NTTLHEKKQI---------------REKF 322
             IPSC +                        ++ L+  + I               +   
Sbjct: 1195 HIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMA 1254

Query: 323  EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPST 382
            EFTTKN    Y+G  L  ++G+DLS NKL G IP +IGNL+++  LNLSHN LTG IP+ 
Sbjct: 1255 EFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAA 1314

Query: 383  FSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY 442
            FS LK +ESLDLS N L G IP +L EL  L VFSVAYNNLSG+IPE TAQF TF E+SY
Sbjct: 1315 FSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSY 1374

Query: 443  EGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYV 502
             GN +LCG  L   ++ +   E +   E +  L D + F+++F  SYV+V+     +LY+
Sbjct: 1375 VGNPYLCGSLLR--KNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYI 1432

Query: 503  NSYWRRRWFYFVEMWITSSYYFVV 526
            N  WR++WF+ +++ IT    FV+
Sbjct: 1433 NGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114135|ref|XP_002332433.1| predicted protein [Populus trichocarpa] gi|222832402|gb|EEE70879.1| predicted protein [Populus trichocarpa]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 261/569 (45%), Positives = 337/569 (59%), Gaps = 49/569 (8%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L  +S  G  +L  H +  +  LDISNNN  G IP +I  + P+L++   + N   G 
Sbjct: 90  LWLSENSFVGALQLQDHPYSNMIELDISNNNMNGQIPKDICLIFPNLWSLKMAKNGFTGG 149

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPS  GN+     LDLSNN L+    E L      + FL LSNNNL G + +  FN ++L
Sbjct: 150 IPSCLGNISSFSVLDLSNNQLSIVKLEQLTA----IMFLNLSNNNLGGQIPTSVFNSSSL 205

Query: 122 KWLQLEGSRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
             L L G+ F G+I    L+       L L+NN  SGK+PRW  N T L+ I +  NH +
Sbjct: 206 DVLFLSGNNFWGQISDFPLNGWKEWVVLDLSNNQFSGKVPRWFVNSTFLRSIDLSKNHFK 265

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
           GPIP +FC+LD L  LD+S NN+SG +PSCF P ++  VHLS+N L G L  G F+N SS
Sbjct: 266 GPIPGDFCKLDQLLYLDLSKNNLSGYIPSCFSPRTLIHVHLSENRLSGPLTHG-FYNSSS 324

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           LVT+DL  N   GSI +W+  LS LS L+L  N+ +GE+P+QLC L +L +LD+S N L 
Sbjct: 325 LVTMDLRDNSFTGSIPNWIGNLSSLSVLLLKANHFDGELPVQLCLLEKLNILDVSQNQLF 384

Query: 301 GPIPSCFDNTTLHEKKQ--------------IREKF------------------------ 322
           GP+PSC  N T  E  Q              I+E +                        
Sbjct: 385 GPLPSCLGNLTFKESSQKAFVYLRYVFLTKSIKEAYYETMGPPLVDSMYNLEKGFQLNFT 444

Query: 323 ---EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
              EFTTKN+ Y Y GK+L+ + G+DLS N  +G IP + GNL+ I +LNLSHNNLTGSI
Sbjct: 445 EVIEFTTKNMYYSYMGKILNYMYGIDLSNNNFVGAIPPEFGNLSAILSLNLSHNNLTGSI 504

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439
           P+TFSNLK++ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG+ PE   QF TF+ 
Sbjct: 505 PATFSNLKHIESLDLSYNNLNGAIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDA 564

Query: 440 SSYEGNTFLCGLPLPICRSPATMSEASIGNER--DDNLIDMNSFFITFTTSYVIVIFATV 497
           S Y+GN FLCG PL    S   +    + N+   DD  IDM  F+I+F   Y +V+    
Sbjct: 565 SCYKGNPFLCGTPLQNNCSEEAVPLQPVHNDEQGDDGFIDMEFFYISFGVCYTVVVMTIA 624

Query: 498 IILYVNSYWRRRWFYFVEMWITSSYYFVV 526
            +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 625 TVLYINPYWRRRWLYFIEDCIDTCYYFVV 653

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 267/576 (46%), Positives = 339/576 (58%), Gaps = 56/576 (9%)

Query: 2    LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
            L L  +S+ G  +L  H + ++  LDISNNN  G IP +I  + P+L     + N   G 
Sbjct: 728  LYLSGNSIVGTLQLQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGC 787

Query: 62   IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
            IPS  GNM  L  LDLSNN L+    E L      + FL LSNNNL G + +  FN +  
Sbjct: 788  IPSCLGNMSSLGVLDLSNNQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTS 843

Query: 122  KWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
            ++L L  + F G+I  S L+   +   L L+NN  SG +PRW  N T L  I +  NH E
Sbjct: 844  EYLYLGDNNFWGQISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFE 903

Query: 181  GPIPVEF-CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239
            GPI   F C+LD L+ LD+S+NN+ G +PSCF+   I  VHLSKN L G LK   F+N S
Sbjct: 904  GPISRHFFCKLDQLEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSS 962

Query: 240  SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
            SLVT+DL  N   GSI +WV  LS LS L+L  N+L+GE+P+QLC L QL +LD+S N L
Sbjct: 963  SLVTMDLRDNSFTGSIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQL 1022

Query: 300  HGPIPSCFDNTTLHEKKQ------------------------------------------ 317
             GP+PSC +N T  E  Q                                          
Sbjct: 1023 SGPLPSCLENLTFKESSQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNF 1082

Query: 318  IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG 377
              E  EFTTKN+ Y Y+GK+LS +SG+DLS N  +G IP + GNL+ I +LNLSHNNLTG
Sbjct: 1083 TEEVIEFTTKNMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTG 1142

Query: 378  SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 437
            SIP+TFSNLK +ESLDLS N  NG IP QL E+ TLEVFSVA+NNLSG+ PE   QF TF
Sbjct: 1143 SIPATFSNLKRIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTF 1202

Query: 438  NESSYEGNTFLCGLPL------PICRSPATMSEASIGNER-DDNLIDMNSFFITFTTSYV 490
            +ES YEGN FLCG PL       +  S   +S+    +E+ DD  IDM  F+I+F+  Y 
Sbjct: 1203 DESCYEGNPFLCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYT 1262

Query: 491  IVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVV 526
            +V+     +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 1263 VVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111804|ref|XP_002332879.1| predicted protein [Populus trichocarpa] gi|222834379|gb|EEE72856.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 262/571 (45%), Positives = 333/571 (58%), Gaps = 51/571 (8%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L  +S  G  +L  H +  +  LDISNNN  G I   I  + P+L +   + N   G 
Sbjct: 87  LYLSKNSFVGALKLQDHPYPNMTKLDISNNNMNGQISKNICLIFPNLLSLRMAKNGFTGC 146

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPS  GN+  L+ LDLSNN L+    E L      + FL LSNNNL G + +  FN +  
Sbjct: 147 IPSCLGNISSLKILDLSNNQLSTVKLEQLTT----IWFLKLSNNNLSGQIPTSVFNSSTS 202

Query: 122 KWLQLEGSRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           ++L L G+ F G++    L        L L+NN  SG +PRW  N T+L+ + +  NH +
Sbjct: 203 EFLYLSGNNFWGQLSDFPLYGWKVWSVLDLSNNQFSGMLPRWFVNSTQLKIVDLSKNHFK 262

Query: 181 GPIPVEF-CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239
           GPIP  F C+ D L+ LD+S+NN+SG + SCF+   I  VHLSKN L G L  G F+N S
Sbjct: 263 GPIPRGFFCKFDQLEYLDLSENNLSGYISSCFNSPQITHVHLSKNRLSGPLTYG-FYNSS 321

Query: 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           SLVT+DL  N   GSI +W+  LS LS L+L  N+ +GE+P+QLC L QL +LD+S N L
Sbjct: 322 SLVTMDLRDNSFTGSIPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQL 381

Query: 300 HGPIPSCFDNTTLHEKKQ------------------------------------------ 317
            GP+PSC  N T  E                                             
Sbjct: 382 SGPLPSCLGNLTFKESSPKAFADPGEIFPSRSIEKAYYETMGPPLVDSVYNLGYYFWLNF 441

Query: 318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG 377
             E  EFTTK ++Y Y+G VLS + G+DLS N LIG IPL+ G L+ I +LNLSHNNLTG
Sbjct: 442 TEEVIEFTTKKMSYGYKGIVLSYMYGIDLSNNNLIGAIPLEFGKLSEILSLNLSHNNLTG 501

Query: 378 SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 437
           SIP+TFSNLK +ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG+ PE   QF TF
Sbjct: 502 SIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTF 561

Query: 438 NESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDMNSFFITFTTSYVIVIFA 495
           +ES YEGN FLCG PL   C   A  S+    +E+ DD  IDM  F+I+F   Y +V+ A
Sbjct: 562 DESCYEGNPFLCGPPLRNNCSEEAVPSQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMA 621

Query: 496 TVIILYVNSYWRRRWFYFVEMWITSSYYFVV 526
              +LY+N YWRRRW YF+E  I + YYFVV
Sbjct: 622 IAAVLYINPYWRRRWLYFIEDCIGTCYYFVV 652

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 260/571 (45%), Positives = 347/571 (60%), Gaps = 62/571 (10%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
            L LVN SL G  +LP  SH  L  LDIS N+ +  IP +I    P L   N S N   G
Sbjct: 229 ALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSG 288

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
           SIPSS  NM  L  LDLSNN L+G IPE L  GC++LR L LSNN+L+G  F R+FNL  
Sbjct: 289 SIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAY 348

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           L  L L G++  G +P SLS  S LE L ++ N+LSGKIPRW+G ++ LQ          
Sbjct: 349 LTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQ---------- 398

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCS 239
                          LD+S+NN+ GSLPS F    ++ +V+LSKN L G L  G    C 
Sbjct: 399 --------------YLDLSENNLYGSLPSSFCSSRTMTEVYLSKNKLEGSLI-GALDGCL 443

Query: 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           SL  LDLS+N   G I + +  L +LS L+LG+NNLEG++P QLC+L +L L+DLS+N+L
Sbjct: 444 SLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHL 503

Query: 300 HGPIPSCFDNTTLHEKKQ-------------------------------IREKFEFTTKN 328
            G I  C   T+  ++++                               + +  EFTTK+
Sbjct: 504 FGHILPCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSVEFTTKS 563

Query: 329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY 388
           I+Y ++G +L  +SG+DLSCN L G IP+++GNL+ IQ LNLSHN+LTG IP TFSNLK 
Sbjct: 564 ISYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKE 623

Query: 389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 448
           +ESLDLS N LNG+IP QL++L  L  FSVA+NNLSG+ PE  AQF+TFN+S YEGN  L
Sbjct: 624 IESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLL 683

Query: 449 CGLPLP--ICRS--PATMSEASIGNERDDNLIDMNSFFITFTTSYVIVIFATVIILYVNS 504
           CG PL     R+  P+ +  +    + ++ +IDM +F +TF+ +Y++V+     +LY+N 
Sbjct: 684 CGPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINP 743

Query: 505 YWRRRWFYFVEMWITSSYYFVVDNL-IPTRF 534
            WRR WFYF+   I + YYF+VDNL +P RF
Sbjct: 744 RWRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/561 (45%), Positives = 323/561 (57%), Gaps = 51/561 (9%)

Query: 11  GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMK 70
           G  +L  H +  +  LDISNNN  G I  +I  + P+L+    + N   G IPS  GN+ 
Sbjct: 388 GTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNIS 447

Query: 71  FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR 130
            L FLDLSNN L+    E L +       L LSNN+L G + +  FN +  ++L L G+ 
Sbjct: 448 SLLFLDLSNNQLSTVQLEQLTIPV-----LKLSNNSLGGQIPTSVFNSSTSQFLYLNGNN 502

Query: 131 FVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQ 189
           F G+I    L     L  L L+NN  SG +PR   N T L+ + +  NH +GPIP +FC+
Sbjct: 503 FSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCK 562

Query: 190 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249
           L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L  G FFN S LVT+DL  N
Sbjct: 563 LGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMDLRDN 621

Query: 250 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
            L GSI +W+   S LS L+L  N+ +GE+P+QLC L QL +LD+S N L GP+PSC  N
Sbjct: 622 SLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGN 681

Query: 310 TTLHEKKQ------------------------------------------IREKFEFTTK 327
            T  E  Q                                            E  EF TK
Sbjct: 682 LTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTK 741

Query: 328 NIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387
           N+ Y Y+G +LS +SG+DLS N   G IP + GNL+ I++LNLSHNN T SIP+TFSNLK
Sbjct: 742 NMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLK 801

Query: 388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 447
            +ESLDLS N LNG IP QL E+ TLEVFSVA+NNLSG  PE   QF TF+ES YEGN F
Sbjct: 802 QIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPF 861

Query: 448 LCGLPLP-ICRSPATMSEASIGNERDD-NLIDMNSFFITFTTSYVIVIFATVIILYVNSY 505
           LCG PL   C      S+    +E+ D   IDM  F+I+F   Y +V+     +LY+N Y
Sbjct: 862 LCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPY 921

Query: 506 WRRRWFYFVEMWITSSYYFVV 526
           WRRRW YF+E  I + YYF+V
Sbjct: 922 WRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104257|ref|XP_002333966.1| predicted protein [Populus trichocarpa] gi|222839284|gb|EEE77621.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/580 (45%), Positives = 340/580 (58%), Gaps = 60/580 (10%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L N+S  G  +L  H +  +  LDISNNN  G IP +I  + P++++   + N   G 
Sbjct: 90  LYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGC 149

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           IPS  GN+  L+ LDLSNN L+    E L      + FL LSNNNL G + +  FN + L
Sbjct: 150 IPSCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTL 205

Query: 122 KWLQLEGSRFVGEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           ++L L G+ F G+I   L     +   L L++N  SG +PRWL N T L  I +  N+ +
Sbjct: 206 EYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFK 265

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
           GPI  +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SS
Sbjct: 266 GPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSS 324

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           LVT+DL  N   GS  +W+  LS LS L+L  N+ +GE+P+QLC L QL +LD+S N L 
Sbjct: 325 LVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLS 384

Query: 301 GPIPSCFDNTTLHEKKQ---------------------------------IREKF----- 322
           GP+PSC  N T  E  Q                                 +R+ F     
Sbjct: 385 GPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFT 444

Query: 323 ----EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
               EFTTKN+ Y Y+GK LS +SG+DLS N  +G IP + G+L++I +LNLSHNNLTGS
Sbjct: 445 EEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGS 504

Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 438
           IP+TFSNLK +ESLDLS N LNG IP QL ++ TLEVFSVA+NNLSG  PE   QF TF+
Sbjct: 505 IPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFD 564

Query: 439 ESSYEGNTFLCGLPL------------PICRSPATMSEASIGNERDDNLIDMNSFFITFT 486
           ES YEGN FLCG PL            P+   P          + DD  IDM  F+I F 
Sbjct: 565 ESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFG 624

Query: 487 TSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVV 526
             Y +V+   V++LY++ YWRRRW YF+E  I + YYFVV
Sbjct: 625 VCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/580 (45%), Positives = 340/580 (58%), Gaps = 60/580 (10%)

Query: 2    LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
            L L N+S  G  +L  H +  +  LDISNNN  G IP +I  + P++++   + N   G 
Sbjct: 429  LYLSNNSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGC 488

Query: 62   IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
            IPS  GN+  L+ LDLSNN L+    E L      + FL LSNNNL G + +  FN + L
Sbjct: 489  IPSCLGNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTL 544

Query: 122  KWLQLEGSRFVGEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
            ++L L G+ F G+I   L     +   L L++N  SG +PRWL N T L  I +  N+ +
Sbjct: 545  EYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFK 604

Query: 181  GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
            GPI  +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SS
Sbjct: 605  GPILRDFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSS 663

Query: 241  LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
            LVT+DL  N   GS  +W+  LS LS L+L  N+ +GE+P+QLC L QL +LD+S N L 
Sbjct: 664  LVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLS 723

Query: 301  GPIPSCFDNTTLHEKKQ---------------------------------IREKF----- 322
            GP+PSC  N T  E  Q                                 +R+ F     
Sbjct: 724  GPLPSCLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFT 783

Query: 323  ----EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
                EFTTKN+ Y Y+GK LS +SG+DLS N  +G IP + G+L++I +LNLSHNNLTGS
Sbjct: 784  EEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGS 843

Query: 379  IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 438
            IP+TFSNLK +ESLDLS N LNG IP QL ++ TLEVFSVA+NNLSG  PE   QF TF+
Sbjct: 844  IPATFSNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFD 903

Query: 439  ESSYEGNTFLCGLPL------------PICRSPATMSEASIGNERDDNLIDMNSFFITFT 486
            ES YEGN FLCG PL            P+   P          + DD  IDM  F+I F 
Sbjct: 904  ESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFG 963

Query: 487  TSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSSYYFVV 526
              Y +V+   V++LY++ YWRRRW YF+E  I + YYFVV
Sbjct: 964  VCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.932	0.550	0.349	4.1e-65
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.904	0.485	0.335	1.6e-63
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.929	0.558	0.349	7.8e-57
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.940	0.539	0.332	1.5e-56
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.884	0.491	0.283	2.7e-45
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.897	0.492	0.342	3.1e-55
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.861	0.426	0.334	1.2e-53
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.826	0.437	0.325	1.4e-51
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.902	0.412	0.306	4.2e-50
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.936	0.592	0.299	5.3e-49

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 193/552 (34%), Positives = 267/552 (48%)

Query:     2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
             L L N+S    F++P   H  L +LD S NN  G  P     VLP+L   N S N   G+
Sbjct:   372 LQLKNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGN 429

Query:    62 IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
              PSS G M  + FLDLS N+L+GE+P+     C +L  L LS+N   GH   R  N T+L
Sbjct:   430 FPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSL 489

Query:   122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL------------GNL--- 166
               L++  + F G+I   L     L  L ++NN L G++P  L            GNL   
Sbjct:   490 IVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSG 549

Query:   167 -----TRLQCII-MPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVH 220
                    L  ++ + NN+  GPIP  F            +N +SG++P       I  + 
Sbjct:   550 ALPSHVSLDNVLFLHNNNFTGPIPDTFLGSIQILDLR--NNKLSGNIPQFVDTQDISFLL 607

Query:   221 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 280
             L  N L G +   T    S +  LDLS N+LNG I    + LS       G    E E+ 
Sbjct:   608 LRGNSLTGYIP-STLCEFSKMRLLDLSDNKLNGFIPSCFNNLS------FGLARKE-EI- 658

Query:   281 IXXXXXXXXXXXXXXXXXXHGPIPSCF--DNTTLHEKKQIREKFEFTTKNI--AYI---- 332
                                 G   S F  +N  L          +F TK    +YI    
Sbjct:   659 ------TNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIGAFQ 712

Query:   333 YQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESL 392
             +    L+ + GLDLS N+L G IP ++G+L +++ LNLSHN L+  IP +FS L+ +ESL
Sbjct:   713 FSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESL 772

Query:   393 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452
             DLS N L G IPHQL  L +L +F+V+YNNLSG IP+   QF TF+E+SY GN  LCG P
Sbjct:   773 DLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPP 831

Query:   453 LPI-CRSPATMSEASIGNERDDN--LIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRR 509
                 C +     E + G E DD    IDM  F+ +   +YV  +   ++++ V+  WRR 
Sbjct:   832 TDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRA 891

Query:   510 WFYFVEMWITSS 521
             W   V+ +I S+
Sbjct:   892 WLRLVDAFIASA 903

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 171/509 (33%), Positives = 255/509 (50%)

Query:    26 LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKF-LQFLDLSNNHLTG 84
             ++++ N F+G++P  + D + S+   + S N   G +P  F    + L  L LS+N L+G
Sbjct:   457 VNLAYNGFQGNLPSSL-DNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSG 515

Query:    85 EI-PEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSLSKC 142
             E+ PE  A     L  +++ NN   G++  + F +L +L  L +  ++  G IP  + + 
Sbjct:   516 EVFPE--AANFTRLWVMSMDNNLFTGNI-GKGFRSLPSLNVLDISNNKLTGVIPSWIGER 572

Query:   143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNN 202
               L  L L+NN L G+IP  L N++ LQ + + +N L G IP               +NN
Sbjct:   573 QGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNN 632

Query:   203 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262
             +SG +P     L++  + L  N L G L    F N  ++  L L  N   G I      L
Sbjct:   633 LSGVIPDTLL-LNVIVLDLRNNRLSGNLPE--FINTQNISILLLRGNNFTGQIPHQFCSL 689

Query:   263 SQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPI-------PSCFDNTTL-HE 314
             S +  L L +N   G +P                     P        P  F++  +  E
Sbjct:   690 SNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDE 749

Query:   315 KKQIRE-----KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                + E     K EF TK+    Y G  L LL G+DLS N+L G IP+++G L  ++ LN
Sbjct:   750 FNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALN 809

Query:   370 LSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
             LSHNNL+G I  +FS LK VESLDLS N+L G IP QL ++ +L VF+V+YNNLSG +P+
Sbjct:   810 LSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQ 869

Query:   430 WTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNSFFITFTTSY 489
                QF TF   SY GN  LCG  + I  +         G E D++ +DM SF+ +F  +Y
Sbjct:   870 GR-QFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEADESTVDMESFYWSFVAAY 928

Query:   490 VIVIFATVIILYVNSYWRRRWFYFVEMWI 518
             V ++   +  L  +S W R WFY V+ ++
Sbjct:   929 VTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 7.8e-57, P = 7.8e-57
 Identities = 183/523 (34%), Positives = 261/523 (49%)

Query:     2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
             L+L N+   G     +   + +  +D+S NNF G +P  +     SL     S N   G 
Sbjct:   378 LNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGP 437

Query:    62 IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA---LSNNNLQGHMFSRNFNL 118
             I     +   L  L + NN  TG+IP  L    +NLR L+   LSNN L G +  R    
Sbjct:   438 IIRKSSDETSLITLIMDNNMFTGKIPRTL----LNLRMLSVIDLSNNLLTGTI-PRWLGN 492

Query:   119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCII-MPNN 177
               L+ L++  +R  G IP SL     L  L L+ N LSG +P  L + +    I+ + NN
Sbjct:   493 FFLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLP--LRSSSDYGYILDLHNN 550

Query:   178 HLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 237
             +L G IP               +N +SG++P      SI  V L +N L G++       
Sbjct:   551 NLTGSIPDTLWYGLRLLDLR--NNKLSGNIPLFRSTPSISVVLLRENNLTGKIPV-ELCG 607

Query:   238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE-VPIXXXXXXXXXXXXXXX 296
              S++  LD ++NRLN SI   V  LS  S    GH+N + +  P                
Sbjct:   608 LSNVRMLDFAHNRLNESIPSCVTNLSFGSG---GHSNADSDWYPASLLSNFMEIYTEVYY 664

Query:   297 XXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
                   I S  D  +L        + EF  K    +Y    L+ + GLDLS N+L G IP
Sbjct:   665 ESL---IVS--DRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIP 719

Query:   357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
              ++G+L R+++LNLS N+L+GSIP +FSNL+ +ESLDLS NKL+G IP QL  L++L VF
Sbjct:   720 EELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVF 779

Query:   417 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDN-L 475
             +V+YNNLSG IP+   QF TF E SY GN  LCG P        T+S      + D++ L
Sbjct:   780 NVSYNNLSGVIPQGK-QFNTFGEKSYLGNFLLCGSPTKRSCGGTTISSGKEYEDDDESGL 838

Query:   476 IDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWI 518
             +D+   + +  T+YV V+   ++ L  +S WRR WF  V+ +I
Sbjct:   839 LDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 1.5e-56, P = 1.5e-56
 Identities = 173/520 (33%), Positives = 246/520 (47%)

Query:     6 NDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS 65
             N+   G F   I   K +  LD+S NNF G +P        S+     S N   G     
Sbjct:   423 NNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPR 482

Query:    66 FGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125
               N   L  L + NN  TG I   L+   + LR L +SNN L G +    F    L ++ 
Sbjct:   483 ETNFPSLDVLRMDNNLFTGNIGGGLSNSTM-LRILDMSNNGLSGAIPRWLFEFPYLDYVL 541

Query:   126 LEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPV 185
             +  +   G IP SL     L  L L+ N  SG +P  + +   +  + + NN+  GPIP 
Sbjct:   542 ISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIY-MFLHNNNFTGPIPD 600

Query:   186 EFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 245
                           +N +SGS+P      SI  + L  N L G + R    + S++  LD
Sbjct:   601 TLLKSVQILDLR--NNKLSGSIPQFDDTQSINILLLKGNNLTGSIPR-ELCDLSNVRLLD 657

Query:   246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPS 305
             LS N+LNG I      LS LS   L  + +   +P                      I  
Sbjct:   658 LSDNKLNGVIPSC---LSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVD-KIE- 712

Query:   306 CFDNTTLHEKK-QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR 364
               D +T  E + +   K  + + +    +   +L L+ G+DLS N+L G IP ++G+L +
Sbjct:   713 -VDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLK 771

Query:   365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
             ++TLNLSHN+L GSIPS+FS L  VESLDLS+N L G IP  L  L +L VF V+ NNLS
Sbjct:   772 LRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLS 831

Query:   425 GEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDN--LIDMNSF 481
             G IP+   QF TF E SY GN  LCG P    C +  +  EA  G E +D+   IDM  F
Sbjct:   832 GIIPQGR-QFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVF 890

Query:   482 FITFTTSYVIVIFATVIILYVNSYWRRRWFYFVEMWITSS 521
             + +  + YV  +   ++++  +  WRR W   V+ +I S+
Sbjct:   891 YFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFIASA 930

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 141/497 (28%), Positives = 227/497 (45%)

Query:     4 LVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIP 63
             L+ ++L   F++P  +H  L  LD+S N+F    P  I  + P L   N S N    ++P
Sbjct:   397 LLQNNLFTSFQIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLP 455

Query:    64 SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKW 123
             SS GNM  +Q++DLS N   G +P     GC ++  L LS+N L G +F  + N TN+  
Sbjct:   456 SSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILG 515

Query:   124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183
             L ++ + F G+I Q L    +LE L ++NN+L+G IP W+G L  L  +++ +N L+G I
Sbjct:   516 LFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDI 575

Query:   184 PVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243
             P+             S N++SG +P      +   + L  N L G +      N      
Sbjct:   576 PMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVE---I 632

Query:   244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPI 303
             LDL  NR +G I ++++ +  +S L+L  NN  G++P                   +G I
Sbjct:   633 LDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTI 691

Query:   304 PSCFDNTTLHEKKQIRE-KFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--------LIGP 354
             PSC  NT+    K+     ++F     + ++ G   SL    D S NK        L+  
Sbjct:   692 PSCLSNTSFGFGKECTSYDYDFGISFPSDVFNG--FSLHQ--DFSSNKNGGIYFKSLLTL 747

Query:   355 IPLQIGNLTRIQT-LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
              PL +      QT +  +  +   +      NLK +  +DLS N+L+G+IP +   L  L
Sbjct:   748 DPLSMDYKAATQTKIEFATKHRYDAYMG--GNLKLLFGMDLSENELSGEIPVEFGGLLEL 805

Query:   414 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDD 473
                ++++NNLSG IP+  +            N     +P  +     ++S   + +    
Sbjct:   806 RALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTEL-TSLSVFKVSHNNLS 864

Query:   474 NLIDMNSFFITFTT-SY 489
              +I     F TF   SY
Sbjct:   865 GVIPQGRQFNTFDAESY 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 3.1e-55, P = 3.1e-55
 Identities = 174/508 (34%), Positives = 244/508 (48%)

Query:    23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
             +  LD+S NNF G +P  +     SL     S N+  G I      +  L  L + NN  
Sbjct:   480 ISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLF 539

Query:    83 TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF--NLTNLKWLQLEGSRFVGEIPQSLS 140
             TGEI   L    VNL     SNN L G + S +   + ++L  L L  +   G +P SL 
Sbjct:   540 TGEIGVGLRT-LVNLSIFDASNNRLTG-LISSSIPPDSSHLIMLLLSNNLLEGTLPPSLL 597

Query:   141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSD 200
                 L  L L+ N LSG +P  + N      I + NN   GP+PV              +
Sbjct:   598 AIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYILDLR--N 655

Query:   201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
             N +SGS+P   +   +  + L  N L G + R    + +S+  LDLS N+LNG I   ++
Sbjct:   656 NKLSGSIPQFVNTGKMITLLLRGNNLTGSIPR-KLCDLTSIRLLDLSDNKLNGVIPPCLN 714

Query:   261 GLS-QLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIR 319
              LS +L   I G +    E+                           +D+T +     I 
Sbjct:   715 HLSTELGEGI-GLSGFSQEISFGDSLQMEFYRSTFLVDE----FMLYYDSTYM-----IV 764

Query:   320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
             E  EF  K     + G  L  + GLDLS N+L G IP ++G+L++++ LNLS N L+ SI
Sbjct:   765 E-IEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSI 823

Query:   380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439
             P+ FS LK +ESLDLS N L G IPHQL  L +L VF+V++NNLSG IP+   QF TFN+
Sbjct:   824 PANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFND 882

Query:   440 SSYEGNTFLCGLPLP-ICRSPATMSEASIGNER---DDN---LIDMNSFFITFTTSYVIV 492
             +SY GN  LCG P    C       EA  G E    DD+    IDM   + T  ++Y I 
Sbjct:   883 NSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIA 942

Query:   493 IFATVIILYVNSYWRRRWFYFVEMWITS 520
             +   ++++  +  WRR W   V+ +I S
Sbjct:   943 LIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.2e-53, P = 1.2e-53
 Identities = 163/487 (33%), Positives = 237/487 (48%)

Query:     1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
             T+ L  +SL    +LPI  H  L +LDIS+N     I  +I  V P+L   N S N   G
Sbjct:   510 TILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQG 567

Query:    61 SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
             +IPSS G MK LQ LD+S+N L G++P     GC +LR L LSNN LQG +FS++ NLT 
Sbjct:   568 TIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTG 627

Query:   121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
             L  L L+G+ F G + + L K  +L  L +++N  SG +P W+G ++RL  + M  N L+
Sbjct:   628 LVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLK 687

Query:   181 GPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
             GP P              S N+ SGS+P   +  S++++ L  N   G L  G  F  + 
Sbjct:   688 GPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAG 745

Query:   241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXH 300
             L  LDL  N  +G I + +D  S+L  L+L +N+ +  +P                    
Sbjct:   746 LEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFR 805

Query:   301 GPIPSCFDNTTLHEKKQIREKF---EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPL 357
             GPIPSCF   +   ++  R      +F    I ++   +  S L+ LD        P P 
Sbjct:   806 GPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLN-LDDGVRNGYQPKPA 864

Query:   358 QI-------------GNLTR-IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
              +             G++ R +  L+LS N L+G IP    +L+ + SL+LS+N+L G I
Sbjct:   865 TVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSI 924

Query:   404 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMS 463
             P  + +LK LE   ++ N L G IP   A   +    +   N  L G  +P      T  
Sbjct:   925 PDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNN-LSG-EIPFKGHLVTFD 982

Query:   464 EAS-IGN 469
             E S IGN
Sbjct:   983 ERSYIGN 989

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.4e-51, P = 1.4e-51
 Identities = 148/454 (32%), Positives = 212/454 (46%)

Query:    21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             ++L  L +S NN  G +P  +   LPSL       N   G IP  FGN+  L++LDL+  
Sbjct:   188 QKLRFLGLSGNNLTGELP-SVLGQLPSLETAILGYNEFKGPIPPEFGNINSLKYLDLAIG 246

Query:    81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
              L+GEIP  L     +L  L L  NN  G +     ++T LK L    +   GEIP  ++
Sbjct:   247 KLSGEIPSELGK-LKSLETLLLYENNFTGTIPREIGSITTLKVLDFSDNALTGEIPMEIT 305

Query:   141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSD 200
             K  +L+ L L  N LSG IP  + +L +LQ + + NN L G +P +            S 
Sbjct:   306 KLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLELWNNTLSGELPSDLGKNSPLQWLDVSS 365

Query:   201 NNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
             N+ SG +PS   +  ++ ++ L  N   GQ+   T   C SLV + +  N LNGSI    
Sbjct:   366 NSFSGEIPSTLCNKGNLTKLILFNNTFTGQIP-ATLSTCQSLVRVRMQNNLLNGSIPIGF 424

Query:   260 DGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIR 319
               L +L  L L  N L G +P                      +PS     ++H  +   
Sbjct:   425 GKLEKLQRLELAGNRLSGGIPGDISDSVSLSFIDFSRNQIRSSLPSTI--LSIHNLQAFL 482

Query:   320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                 F +  +   +Q      LS LDLS N L G IP  I +  ++ +LNL +NNLTG I
Sbjct:   483 VADNFISGEVPDQFQD--CPSLSNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEI 540

Query:   380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439
             P   + +  +  LDLSNN L G +P  +     LE+ +V+YN L+G +P       T N 
Sbjct:   541 PRQITTMSALAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVPI-NGFLKTINP 599

Query:   440 SSYEGNTFLCGLPLPICRS--PATMSEASIGNER 471
                 GN+ LCG  LP C     AT S +S+  +R
Sbjct:   600 DDLRGNSGLCGGVLPPCSKFQRATSSHSSLHGKR 633

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 4.2e-50, P = 4.2e-50
 Identities = 154/503 (30%), Positives = 236/503 (46%)

Query:     2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
             L+L +++  G F   I + + L +L +  NN  G +P ++  +L +L   +   N L G 
Sbjct:   341 LTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGP 399

Query:    62 IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
             IPSS  N   L+ LDLS+N +TGEIP     G +NL F+++  N+  G +    FN +NL
Sbjct:   400 IPSSISNCTGLKLLDLSHNQMTGEIPR--GFGRMNLTFISIGRNHFTGEIPDDIFNCSNL 457

Query:   122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181
             + L +  +   G +   + K   L  L ++ NSL+G IPR +GNL  L  + + +N   G
Sbjct:   458 ETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTG 517

Query:   182 PIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQV-HLSKNMLHGQLKRGTFFNCSS 240
              IP E              N++ G +P     + +  V  LS N   GQ+    F    S
Sbjct:   518 RIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIP-ALFSKLES 576

Query:   241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP--IXXXXXXXXXXXXXXXXX 298
             L  L L  N+ NGSI   +  LS L+   +  N L G +P  +                 
Sbjct:   577 LTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNL 636

Query:   299 XHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
               G IP   +   L   ++I       + +I    Q      +  LD S N L G IP +
Sbjct:   637 LTGTIPK--ELGKLEMVQEIDLSNNLFSGSIPRSLQA--CKNVFTLDFSQNNLSGHIPDE 692

Query:   359 I-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417
             +   +  I +LNLS N+ +G IP +F N+ ++ SLDLS+N L G+IP  L  L TL+   
Sbjct:   693 VFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLK 752

Query:   418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLID 477
             +A NNL G +PE +  F   N S   GNT LCG   P+   P T+ + S    +   +I 
Sbjct:   753 LASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL--KPCTIKQKSSHFSKRTRVI- 808

Query:   478 MNSFFITFTTSYVIVIFATVIIL 500
                  I  + + ++++   V+IL
Sbjct:   809 ---LIILGSAAALLLVLLLVLIL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 5.3e-49, P = 5.3e-49
 Identities = 162/541 (29%), Positives = 241/541 (44%)

Query:     2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
             L L N +L G     + +   L ++++  N F G IP  I + L  L     + N L G 
Sbjct:   115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGN-LNQLRHLILANNVLTGE 173

Query:    62 IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
             IPSS GN+  L  L+L +N L G+IP+ +      LR L+L++NNL G + S   NL+NL
Sbjct:   174 IPSSLGNLSRLVNLELFSNRLVGKIPDSIG-DLKQLRNLSLASNNLIGEIPSSLGNLSNL 232

Query:   122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG 181
               L L  ++ VGE+P S+     L  +   NNSLSG IP    NLT+L   ++ +N+   
Sbjct:   233 VHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTS 292

Query:   182 PIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSS 240
               P +            S N+ SG  P     + S++ ++L +N   G ++     + + 
Sbjct:   293 TFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTK 352

Query:   241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXH 300
             L  L L  NRL+G I + +  L  L  L + HNN  G +P                    
Sbjct:   353 LQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLE 412

Query:   301 GPIPSCFD--NTTLHEKKQIREKFEFTTKNIAYI---------YQGKV------LSLLSG 343
             G +P+C    NT +         FE T++  A I         +QG +      LS L  
Sbjct:   413 GEVPACLWRLNTMVLSHNSF-SSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGF 471

Query:   344 LDLSCNKLIGPIPLQIGNLT-RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK 402
             LDLS N   G IP  I N +  I+ LNL  NN +G++P  FS    + SLD+S+N+L GK
Sbjct:   472 LDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGK 531

Query:   403 IPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATM 462
              P  L+  K LE+ +V  N +    P W     + +  +   N F           P   
Sbjct:   532 FPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFY---------GPLYH 582

Query:   463 SEASIGNERDDNLIDM--NSFFITFTTSYV-----IVIFATVIILYVNSYWRRRWFYFVE 515
               ASIG +    +ID+  N+F  T    Y      +      +  Y+  +WR    Y+ E
Sbjct:   583 RHASIGFQ-SLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHE 641

Query:   516 M 516
             M
Sbjct:   642 M 642

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0067011801 hypothetical protein (710 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-56
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  215 bits (549), Expect = 1e-60
 Identities = 169/494 (34%), Positives = 236/494 (47%), Gaps = 54/494 (10%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
           TL L N+ L G     I S   L +LD+  N   G IP  + + L SL     + N L G
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVG 202

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
            IP   G MK L+++ L  N+L+GEIP  +  G  +L  L L  NNL G + S   NL N
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           L++L L  ++  G IP S+     L  L L++NSLSG+IP  +  L  L+ + + +N+  
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCS 239
           G IPV    L  LQ+L +  N  SG +P      + +  + LS N L G++  G    CS
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL---CS 378

Query: 240 S--LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN 297
           S  L  L L  N L G I   +     L  + L  N+  GE+P +  +L  +  LD+SNN
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 298 NLHGPIPS-CFDNTTLHEKKQIREKF------EFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
           NL G I S  +D  +L      R KF       F +K             L  LDLS N+
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR------------LENLDLSRNQ 486

Query: 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410
             G +P ++G+L+ +  L LS N L+G IP   S+ K + SLDLS+N+L+G+IP    E+
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 411 KTLEVFSVAYNNLSGEIPE-----------------------WTAQFATFNESSYEGNTF 447
             L    ++ N LSGEIP+                        T  F   N S+  GN  
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606

Query: 448 LCG----LPLPICR 457
           LCG      LP C+
Sbjct: 607 LCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  202 bits (515), Expect = 5e-56
 Identities = 149/419 (35%), Positives = 219/419 (52%), Gaps = 29/419 (6%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNN 80
           R+  +D+S  N  G I   I   LP +   N S N L G IP   F     L++L+LSNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
           + TG IP        NL  L LSNN L G + +   + ++LK L L G+  VG+IP SL+
Sbjct: 129 NFTGSIPRGSIP---NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
             +SLE L L +N L G+IPR LG +  L+ I +  N+L G IP E   L  L  LD+  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 201 NNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
           NN++G +PS    L  ++ + L +N L G +   + F+   L++LDLS N L+G I + V
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF---DNTTLHEKK 316
             L  L  L L  NN  G++P+ L  L +LQ+L L +N   G IP      +N T+    
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV---- 360

Query: 317 QIREKFEFTTKNIAYIYQGKVLSLL--SG----LDLSCNKLIGPIPLQIGNLTRIQTLNL 370
                 + +T N+     G++   L  SG    L L  N L G IP  +G    ++ + L
Sbjct: 361 -----LDLSTNNLT----GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
             N+ +G +PS F+ L  V  LD+SNN L G+I  +  ++ +L++ S+A N   G +P+
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (388), Expect = 2e-39
 Identities = 101/299 (33%), Positives = 156/299 (52%), Gaps = 37/299 (12%)

Query: 149 YLNNNSLSGKIPRWLG----NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204
           YL+N + S  +  W G    N +R+  I +   ++ G I     +L  +Q +++S+N +S
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 205 GSLPSCFHPL--SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262
           G +P        S++ ++LS N   G + RG+  N   L TLDLS N L+G I + +   
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSF 163

Query: 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322
           S L  L LG N L G++P  L  L  L+ L L++N L G IP         E  Q++   
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP--------RELGQMK--- 212

Query: 323 EFTTKNIAYIYQG------------KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNL 370
                ++ +IY G              L+ L+ LDL  N L GPIP  +GNL  +Q L L
Sbjct: 213 -----SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
             N L+G IP +  +L+ + SLDLS+N L+G+IP  +++L+ LE+  +  NN +G+IP 
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 5e-25
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 31/203 (15%)

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCEL-NQLQLLDLS 295
           N S +V++DLS   ++G IS  +  L  +  + L +N L G +P  +    + L+ L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355
           NNN  G IP                                 +  L  LDLS N L G I
Sbjct: 127 NNNFTGSIPRGS------------------------------IPNLETLDLSNNMLSGEI 156

Query: 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415
           P  IG+ + ++ L+L  N L G IP++ +NL  +E L L++N+L G+IP +L ++K+L+ 
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 416 FSVAYNNLSGEIPEWTAQFATFN 438
             + YNNLSGEIP       + N
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLN 239

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 58/178 (32%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399
            + GL L    L G IP  I  L  +Q++NLS N++ G+IP +  ++  +E LDLS N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 400 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA----QFATFNESSYEGNTFLCGLP-LP 454
           NG IP  L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 455 ICRSPATMSEASIGNERDDNLIDMNSFFITFTTS---YVIVIFATVIILYVNSYWRRR 509
            C  P     A IG              I F  S     +VI A         +W+RR
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAFLFLVICAMC-------WWKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 13/137 (9%)

Query: 323 EFTTKNIAYIYQGKVLSLLSGL------DLSCNKLIGPIPLQIGNLT-RIQTLNLSHNNL 375
           + + KNI+    GK+ S +  L      +LS N+L GPIP  I   +  ++ LNLS+NN 
Sbjct: 75  DLSGKNIS----GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 435
           TGSIP     +  +E+LDLSNN L+G+IP+ +    +L+V  +  N L G+IP       
Sbjct: 131 TGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 436 TFNESSYEGNTFLCGLP 452
           +    +   N  +  +P
Sbjct: 189 SLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 19/126 (15%)

Query: 116 FNLTNLKW----LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQC 171
           F+ T  KW    L L+     G IP  +SK   L+ + L+ NS+ G IP  LG++T L+ 
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 172 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 231
           + +  N   G IP    QL  L+IL+++ N++SG +P+                L G+L 
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---------------LGGRLL 515

Query: 232 RGTFFN 237
               FN
Sbjct: 516 HRASFN 521

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           L + N   RG IP +I+  L  L + N S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 86  IPEHLAVGCVNLRFLALSNNNLQG 109
           IPE L     +LR L L+ N+L G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 35/132 (26%)

Query: 251 LNGSISDW-VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
            + +   W +DGL       L +  L G +P  + +L  LQ ++LS N++ G IP    +
Sbjct: 411 FDSTKGKWFIDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS 464

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                                       ++ L  LDLS N   G IP  +G LT ++ LN
Sbjct: 465 ----------------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 370 LSHNNLTGSIPS 381
           L+ N+L+G +P+
Sbjct: 497 LNGNSLSGRVPA 508

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 9/121 (7%)

Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP----STFSNLKYVESLDL 394
           S +  +DLS   + G I   I  L  IQT+NLS+N L+G IP    +T S+L+Y   L+L
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRY---LNL 125

Query: 395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP 454
           SNN   G IP   +    LE   ++ N LSGEIP     F++       GN  +  +P  
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 455 I 455
           +
Sbjct: 184 L 184

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           L L N  L G     I   + L  +++S N+ RG+IP  +  +  SL   + S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHL 90
           IP S G +  L+ L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 33/85 (38%), Positives = 47/85 (55%)

Query: 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159
           L L N  L+G + +    L +L+ + L G+   G IP SL   +SLE L L+ NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 160 PRWLGNLTRLQCIIMPNNHLEGPIP 184
           P  LG LT L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 9e-07
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 53/150 (35%)

Query: 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235
           N  L G IP +  +L  LQ +++S N+I G++P                         + 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SL 462

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295
            + +SL  LDLSYN                           G +P  L +L  L++L+L+
Sbjct: 463 GSITSLEVLDLSYNSF------------------------NGSIPESLGQLTSLRILNLN 498

Query: 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFT 325
            N+L G +P+      LH     R  F FT
Sbjct: 499 GNSLSGRVPAALGGRLLH-----RASFNFT 523

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 61/256 (23%), Positives = 90/256 (35%), Gaps = 74/256 (28%)

Query: 72  LQFLDLSNNHLTGEIPEHLAV------GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125
           L+ L LS N  TG IP  L            L+ L LS+N L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--------------- 96

Query: 126 LEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG--------NLTRLQCIIMPNN 177
             G   +    +SL + SSL+ L LNNN L  +  R L          L +L       N
Sbjct: 97  --GCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL---GRN 147

Query: 178 HLEG----PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233
            LEG     +         L+ L++++N I  +              L++ +        
Sbjct: 148 RLEGASCEALAKALRANRDLKELNLANNGIGDAGIR----------ALAEGLKANC---- 193

Query: 234 TFFNCSSLVTLDLSYNRLN----GSISDWVDGLSQLSHLILGHNNLEGEVPIQ------L 283
                 +L  LDL+ N L      ++++ +  L  L  L LG NNL  +          L
Sbjct: 194 ------NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALL 246

Query: 284 CELNQLQLLDLSNNNL 299
                L  L LS N++
Sbjct: 247 SPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 81/271 (29%), Positives = 124/271 (45%), Gaps = 37/271 (13%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
            +P SLS+  SL+ L  +  S S      L NL  L  + +  N L   I     +L  L
Sbjct: 61  LLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNL 118

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
             LD+ +NNI+  +P     L      L  +    +       N  +L  LDLS+N L+ 
Sbjct: 119 TSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS- 176

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
            +   +  LS L++L L  N +  ++P ++  L+ L+ LDLSNN++   + S   N    
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---- 230

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
                                   L  LSGL+LS NKL   +P  IGNL+ ++TL+LS+N
Sbjct: 231 ------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 374 NLTGSIPSTFSNLKYVESLDLSNNKLNGKIP 404
            +  S  S+  +L  +  LDLS N L+  +P
Sbjct: 266 QI--SSISSLGSLTNLRELDLSGNSLSNALP 294

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 60/256 (23%), Positives = 92/256 (35%), Gaps = 67/256 (26%)

Query: 193 LQILDISDNNIS----GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 248
           LQ LD+SDN +     G L S     S++++ L+ N L     RG       L  L  + 
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG---DRGLRLLAKGLKDLPPA- 138

Query: 249 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQ----LQLLDLSNNNLHGPIP 304
                           L  L+LG N LEG     L +  +    L+ L+L+NN +     
Sbjct: 139 ----------------LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA-- 180

Query: 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKL--IGPIPLQIG- 360
                                   I  + +G K    L  LDL+ N L   G   L    
Sbjct: 181 -----------------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 361 -NLTRIQTLNLSHNNLTGSIPSTFSN-----LKYVESLDLSNNKLNGKIPHQLVEL---- 410
            +L  ++ LNL  NNLT +  +  ++        + +L LS N +       L E+    
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

Query: 411 KTLEVFSVAYNNLSGE 426
           ++L    +  N    E
Sbjct: 278 ESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL 399
           LDLS N+L          L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           +L +LDLS NRL         GL  L  L L  NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275
           + LS N L   +  G F    +L  LDLS N L     +   GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 8/196 (4%)

Query: 104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 163
            ++L G     N  L  L  L L  +R    I   L + ++L  L L+NN+++  IP  +
Sbjct: 80  ISSLDGSENLLN--LLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLI 135

Query: 164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 223
           G L      +  +++    +P     L  L+ LD+S N++S       +  ++  + LS 
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195

Query: 224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQL 283
           N +            S+L  LDLS N +   +   +  L  LS L L +N LE ++P  +
Sbjct: 196 NKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251

Query: 284 CELNQLQLLDLSNNNL 299
             L+ L+ LDLSNN +
Sbjct: 252 GNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
            +++L+LS+N LT      F  L  ++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
           L L    L G I + +  L  L  + L  N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 304 P 304
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179
           NLK L L  +R       +     +L+ L L+ N+L+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 63  PSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL 107
             +F  +  L+ LDLS N+LT  I      G  +LR L LS NNL
Sbjct: 17  DGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEG 128
           L+ LDLSNN LT  IP+    G  NL+ L LS NNL       FS    L +L+ L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 129 SRF 131
           +  
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 144 SLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 203
           +L+ L L+NN L+         L  L+ + +  N+L    P  F  L  L+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.52
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
PLN03150	623	hypothetical protein; Provisional	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.96
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.74
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.65
KOG4341	483	consensus F-box protein containing LRR [General fu	97.58
KOG4341	483	consensus F-box protein containing LRR [General fu	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.18
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.93
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.67
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.65
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.39
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.33
smart00370	26	LRR Leucine-rich repeats, outliers.	92.33
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.71
smart00370	26	LRR Leucine-rich repeats, outliers.	91.71
KOG4308	478	consensus LRR-containing protein [Function unknown	91.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.84
KOG4308	478	consensus LRR-containing protein [Function unknown	89.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.12
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.41

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-50  Score=449.76  Aligned_cols=440  Identities=33%  Similarity=0.496  Sum_probs=244.9

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      |||++|++.+.+|.  ..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus       123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             EECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence            55555555554442  23455555555555555445544443 4555555555555555555555555555555555555


Q ss_pred             CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598           82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR  161 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  161 (536)
                      +++.+|..+ +.+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|.
T Consensus       200 l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        200 LVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            544444443 3455555555555555544444455555555555555555444444455555555555555554444444


Q ss_pred             ccCCCCCCCeEEccCCccccCCcccccCCCCCCEE------------------------EccCCcCcccCCCCC-CCCCc
Q 045598          162 WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL------------------------DISDNNISGSLPSCF-HPLSI  216 (536)
Q Consensus       162 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L------------------------~l~~n~~~~~~~~~~-~~~~L  216 (536)
                      .+.++++|++|++++|.+.+..|..+..+++|+.|                        ++++|.+.+..|..+ ...+|
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L  358 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL  358 (968)
T ss_pred             hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence            44444555555555544444444444444444444                        444444443333322 33445


Q ss_pred             cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598          217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN  296 (536)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  296 (536)
                      +.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus       359 ~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             cEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            55555555444433332 44444555555555555555555555566666666666666655565666666666666666


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccce-eeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccC
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIA-YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL  375 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  375 (536)
                      |.+++..+..+........      +.+..+.+. ..+.....++|+.|++++|.+.+..|..+..+++|+.|+|++|++
T Consensus       438 N~l~~~~~~~~~~l~~L~~------L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  511 (968)
T PLN00113        438 NNLQGRINSRKWDMPSLQM------LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL  511 (968)
T ss_pred             CcccCccChhhccCCCCcE------EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence            6666555544333221111      111111111 111112235677777777777777777777777777777777777


Q ss_pred             CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      .+..|+.+.++++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++++.+++.+|++.+..|
T Consensus       512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            77777777777777777777777777777777777777777777777777777777677777777777777666544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.7e-48  Score=432.22  Aligned_cols=440  Identities=33%  Similarity=0.523  Sum_probs=333.3

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccC---------------
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSF---------------   66 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~---------------   66 (536)
                      |||++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..+               
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            455555555555555555555555555555555455544443 4455555555555444444444               


Q ss_pred             ---------CCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCc
Q 045598           67 ---------GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ  137 (536)
Q Consensus        67 ---------~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  137 (536)
                               +++++|++|++++|.+++.+|..+ +.+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.
T Consensus       224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  302 (968)
T PLN00113        224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE  302 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence                     444555555555554444444433 4455555555555555555555555666666666666666666666


Q ss_pred             CCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCc
Q 045598          138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSI  216 (536)
Q Consensus       138 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L  216 (536)
                      .+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+..+ ...++
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence            66677777777777777777777777788888888888888887888888999999999999999988777655 56789


Q ss_pred             cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598          217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN  296 (536)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  296 (536)
                      +.+++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+++|+.|++++
T Consensus       383 ~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        383 FKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            99999999998777765 88899999999999999999999999999999999999999998998889999999999999


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccceeeec--cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN  374 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  374 (536)
                      |.+.+..|..+....       ...+.+..+.+.....  ...+++|++|++++|.+.+..|..+..+++|++|+|++|.
T Consensus       462 n~~~~~~p~~~~~~~-------L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        462 NKFFGGLPDSFGSKR-------LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             ceeeeecCccccccc-------ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence            999988887654311       1223333333321111  1347789999999999999999999999999999999999


Q ss_pred             CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       375 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      +++..|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. ..+.++...++.|||..|+-+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999975 467788888999999999743

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-45  Score=346.30  Aligned_cols=420  Identities=24%  Similarity=0.282  Sum_probs=369.3

Q ss_pred             CcCEEEccCCcCcccCCh-hHhhc-CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           22 RLGMLDISNNNFRGHIPV-EIADV-LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~-~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      .-+.||++++.+. .+.. .+... .+.-+.|++++|.+...-+..|.++++|+.+++.+|.++ .||... +...+|+.
T Consensus        53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~  129 (873)
T KOG4194|consen   53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEK  129 (873)
T ss_pred             CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeE
Confidence            3567888888776 3211 11111 235678999999999888888999999999999999999 999765 56678999


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                      |+|.+|.|+.+..+.+..++.|+.|||+.|.|+.+....|..-.++++|++++|.|+......|.++.+|.+|.++.|++
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            99999999999999999999999999999999977767888888999999999999988888999999999999999999


Q ss_pred             ccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh
Q 045598          180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW  258 (536)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  258 (536)
                      +...+..|..+++|+.|++..|++.....-.| ++++|+.|.+..|.+. .+..++|..+.++++|+|+.|++...-..|
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence            98889999999999999999999986644444 7889999999999995 677788999999999999999999888899


Q ss_pred             hhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccc
Q 045598          259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL  338 (536)
Q Consensus       259 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (536)
                      +-+++.|+.|++++|.|....+..+.-+++|++|+|+.|+++...+..|..                            +
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------------L  340 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------------L  340 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----------------------------H
Confidence            999999999999999999888888999999999999999999888877754                            7


Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc---cccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV  415 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  415 (536)
                      ..|++|+|++|.+......+|.++++|++|||++|.++..+.+   .|.++++|+.|+|.+|++..+...+|.+++.|+.
T Consensus       341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            7899999999999987788999999999999999999866544   5888999999999999999888889999999999


Q ss_pred             EEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-----------------CCCCCCCCCcccCCCCcCcc
Q 045598          416 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPATMSEASIGNERDDN  474 (536)
Q Consensus       416 L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-----------------~C~~~~~~~~~~~~~~~~~~  474 (536)
                      ||+.+|.|...-|.+|.++ .++++-+.--.++|||++.                 .|.-|+.+.++.+...+...
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~  495 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTAN  495 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhh
Confidence            9999999999999999888 8999999999999999885                 69999999998776555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-42  Score=327.75  Aligned_cols=368  Identities=27%  Similarity=0.298  Sum_probs=248.1

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      .-+.||+++|++. .+-..++..+++|+.+.+..|.++ .+|.......+|+.|+|.+|.|+ .+.......++.|+.||
T Consensus        79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            3455777777766 444444445667777777777666 45554455556777777777666 45444445666777777


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      |+.|.++.+....|..-.++++|+|++|+|+......|..+.+|..|.++.|+++...+..|..+++|+.|++..|++.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            77777766666666666667777777777766666666666777777777777765555666667777777777776664


Q ss_pred             CCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598          182 PIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD  260 (536)
Q Consensus       182 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  260 (536)
                      .....|.++++|+.|.+..|++.......| .+..+++|+++.|++. .+..+++-++++|+.|++++|.|....++.+.
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhh
Confidence            445566677777777777777666555555 5566777777777664 44445566777777777777777766666666


Q ss_pred             CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccc
Q 045598          261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL  340 (536)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (536)
                      .+++|+.|+|++|.++...+.+|..+..|++|+|+.|++.......|..                            +++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~----------------------------lss  366 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG----------------------------LSS  366 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH----------------------------hhh
Confidence            6777777777777777666667777777777777777766544444432                            567


Q ss_pred             cceEEccCCcCcCCC---cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          341 LSGLDLSCNKLIGPI---PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       341 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      |++|||++|.+...+   ...|.++++|+.|++.+|++..+...+|+++++|++|||.+|.|..+.+++|..+ .|+.|-
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv  445 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV  445 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence            777777777665332   3457778888888888888887767778888888888888888887888888777 777776


Q ss_pred             ccCCc
Q 045598          418 VAYNN  422 (536)
Q Consensus       418 l~~N~  422 (536)
                      +..-+
T Consensus       446 ~nSss  450 (873)
T KOG4194|consen  446 MNSSS  450 (873)
T ss_pred             hcccc
Confidence            65433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.8e-37  Score=279.26  Aligned_cols=415  Identities=27%  Similarity=0.395  Sum_probs=290.7

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL   97 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   97 (536)
                      ..-..++.+++++|.+. .+-.++-. +..+.+++++.|.+. ..|.+++.+..++.++.++|++. .+|+.+ +.+.++
T Consensus        42 W~qv~l~~lils~N~l~-~l~~dl~n-L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l  116 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE-VLREDLKN-LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISL  116 (565)
T ss_pred             hhhcchhhhhhccCchh-hccHhhhc-ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhh
Confidence            34466788888888877 45555544 667888888888877 56777888888888888888888 888887 577888


Q ss_pred             CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598           98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN  177 (536)
Q Consensus        98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  177 (536)
                      +.++.++|.+.. .++.++.+..|+.++..+|+++ ..|..+..+.++..+++.+|++....|..+ .++.|++++...|
T Consensus       117 ~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  117 VKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSN  193 (565)
T ss_pred             hhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchh
Confidence            888888888873 4566777788888888888887 566777788888888888888874444444 4888888888888


Q ss_pred             ccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch
Q 045598          178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD  257 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  257 (536)
                      -+. ..|..++++.+|+.|++..|++.. .|..-.+..|++++++.|.+. .++......++++..||+.+|+++ ..|+
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd  269 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD  269 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch
Confidence            776 567778888888888888888874 445557778888888888873 566655668888888888888888 5677


Q ss_pred             hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc---------------------
Q 045598          258 WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK---------------------  316 (536)
Q Consensus       258 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~---------------------  316 (536)
                      .+.-+.+|+.||+++|.++ ..|..++++ +|+.|-+.||++..+-.+.+...+.....                     
T Consensus       270 e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            7777888888888888888 577778888 88888888887642111111000000000                     


Q ss_pred             ----------------------------------------cccceeEEeeccceeeecc---------------------
Q 045598          317 ----------------------------------------QIREKFEFTTKNIAYIYQG---------------------  335 (536)
Q Consensus       317 ----------------------------------------~~~~~~~~~~~~~~~~~~~---------------------  335 (536)
                                                              .......+..+.++.+|.+                     
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv  427 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV  427 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence                                                    0011122222222222211                     


Q ss_pred             ----ccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC
Q 045598          336 ----KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK  411 (536)
Q Consensus       336 ----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  411 (536)
                          ..+++|.-|++++|.+. .+|..++++..|++|+++.|++. ..|..+-.+..++.+-.++|++....++.+.++.
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~  505 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR  505 (565)
T ss_pred             hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence                12345555555555554 34555555555666666666555 4455555555555555555666656666688899


Q ss_pred             CCCEEEccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598          412 TLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       412 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      +|..||+.+|.+. .+|..++.+++++++.+.||||.-
T Consensus       506 nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  506 NLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            9999999999999 677778999999999999999873

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.7e-34  Score=276.29  Aligned_cols=366  Identities=25%  Similarity=0.338  Sum_probs=200.8

Q ss_pred             CCcCEEEccCCcCc-ccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           21 KRLGMLDISNNNFR-GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        21 ~~L~~L~ls~~~~~-~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      +-.+-+|+++|.++ +..|.+.-. |+.++.|.|....+. .+|..++.+.+|++|.+++|++. .+-..+ ..++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence            33444555555554 244444443 445555555554444 34555555555555555555544 333222 34444555


Q ss_pred             EEcccCccCc-cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598          100 LALSNNNLQG-HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH  178 (536)
Q Consensus       100 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  178 (536)
                      +++..|++.. ..|..++.+..|+.|+|++|                        .+. ..|..+...+++-.|++++|+
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShN------------------------qL~-EvP~~LE~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHN------------------------QLR-EVPTNLEYAKNSIVLNLSYNN  137 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchh------------------------hhh-hcchhhhhhcCcEEEEcccCc
Confidence            5555544432 22333444444444444444                        444 344444444444445555555


Q ss_pred             cccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC-Cccch
Q 045598          179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-GSISD  257 (536)
Q Consensus       179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~  257 (536)
                      |..+....|.++..|-.|++|+|++...+|..-.+..|++|.+++|.+.- ..-..+..+++|+.|.+++.+-+ ..+|.
T Consensus       138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCC
Confidence            44443344444444445555555554444444444445555555544321 11111445556666666665432 24556


Q ss_pred             hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccc
Q 045598          258 WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKV  337 (536)
Q Consensus       258 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (536)
                      .+.++.+|..++++.|.+. ..|..+..+++|+.|++++|.++..... .+.                            
T Consensus       217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-~~~----------------------------  266 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-EGE----------------------------  266 (1255)
T ss_pred             chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc-HHH----------------------------
Confidence            6666777777777777766 6667777777777777777766633211 110                            


Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      ..+|++|++|.|+++ ..|.++..+++|+.|.+.+|+++ +-+|++++.+.+|+.+..++|.+. ..|+.++.+..|+.|
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL  344 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence            345666777777766 56666777777777777777665 225666677777777777777666 666777777777777


Q ss_pred             EccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598          417 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       417 ~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      .++.|++. .+|++..-++-+..+++..||-+.
T Consensus       345 ~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  345 KLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence            77777766 456666566666677777776554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-33  Score=270.66  Aligned_cols=361  Identities=23%  Similarity=0.311  Sum_probs=254.1

Q ss_pred             EEeccccccc-cCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            2 LSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         2 L~L~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      .|+++|.|+| .+|.....|++++-|.|...++. .+|..+.. +.+|++|.+++|++. .+-..++.++.||.+++..|
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcc
Confidence            5889999995 68999999999999999999998 89999988 789999999999988 45577899999999999999


Q ss_pred             cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCC
Q 045598           81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI  159 (536)
Q Consensus        81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  159 (536)
                      ++.. -+|.++| .+..|..|||++|+++. .|..+..-+++-+|+|++|.|..+....|-++..|-.||+++|++. .+
T Consensus        89 ~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L  165 (1255)
T KOG0444|consen   89 NLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML  165 (1255)
T ss_pred             ccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence            8753 5888886 79999999999999984 5667778899999999999998666677888999999999999997 67


Q ss_pred             CcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCC
Q 045598          160 PRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  239 (536)
Q Consensus       160 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  239 (536)
                      |.-+..+.+|++|.+++|.+.......+-.+++|+.|.+++.+-+-.                      -+|.. +..+.
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----------------------N~Pts-ld~l~  222 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----------------------NIPTS-LDDLH  222 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh----------------------cCCCc-hhhhh
Confidence            77788999999999999987655445555677788888877654311                      12222 44445


Q ss_pred             CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598          240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR  319 (536)
Q Consensus       240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  319 (536)
                      +|..+|++.|.+. ..|+.+..+++|+.|+|++|+++ .+........+|++|+++.|+++ ..|++++.          
T Consensus       223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK----------  289 (1255)
T KOG0444|consen  223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK----------  289 (1255)
T ss_pred             hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------
Confidence            5555555555555 44555555555555555555555 23333334445555555555555 33444433          


Q ss_pred             ceeEEeeccceeeeccccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                        ++.|+.|.+.+|+++- -+|..++.+..|+.+..++|.+. ..|+++..|..|+.|.|+.|+
T Consensus       290 ------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  290 ------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             ------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence                              4455555555555432 24555555666666666655555 555666666666666666665


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCc
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      +- .+|+++.-++.|+.||++.|+--
T Consensus       351 Li-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  351 LI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             ee-echhhhhhcCCcceeeccCCcCc
Confidence            55 55555555666666666665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=1e-34  Score=264.19  Aligned_cols=380  Identities=28%  Similarity=0.392  Sum_probs=277.6

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      |+.++|++. .+|..+....+++.+++++|.+. .+|.++++ +-.+..++-.+|+++ ..|.++.++.+|..+++.+|.
T Consensus        96 l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~  171 (565)
T KOG0472|consen   96 LNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK  171 (565)
T ss_pred             hhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc
Confidence            455566664 56666666777777777777776 66777766 446777777777776 456667777777777777777


Q ss_pred             CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598           82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR  161 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  161 (536)
                      ++ ..|+.... ++.|++||...|.++ ..|..++.+.+|.-|++++|++. .+| .|.+++.|.++.++.|.+. .+|.
T Consensus       172 l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpa  245 (565)
T KOG0472|consen  172 LK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPA  245 (565)
T ss_pred             hh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence            77 66666543 778888888888777 45666788888888888888887 555 6888888888888888887 4554


Q ss_pred             c-cCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC------------
Q 045598          162 W-LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG------------  228 (536)
Q Consensus       162 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------------  228 (536)
                      . ..+++++..|++.+|+++ ..|..+.-+++|+.||+++|.+++.++....+ +|+.|.+.||.+..            
T Consensus       246 e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~  323 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQE  323 (565)
T ss_pred             HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence            4 447889999999999998 67888888999999999999998665554444 88888888884421            


Q ss_pred             -------------------------cccccccC---CCCCccEEEccCCcCCCccchhhhCC--CCccEEEccccccc--
Q 045598          229 -------------------------QLKRGTFF---NCSSLVTLDLSYNRLNGSISDWVDGL--SQLSHLILGHNNLE--  276 (536)
Q Consensus       229 -------------------------~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~--  276 (536)
                                               ..+...|.   ...+.+.|++++-+++....+.|..-  .-....+++.|++.  
T Consensus       324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el  403 (565)
T KOG0472|consen  324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL  403 (565)
T ss_pred             HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence                                     00111111   22345666666666664433333321  11445555555443  


Q ss_pred             ---------------------ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecc
Q 045598          277 ---------------------GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG  335 (536)
Q Consensus       277 ---------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (536)
                                           +-+|..++.+++|..|++++|.+.. .|..++.                          
T Consensus       404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~--------------------------  456 (565)
T KOG0472|consen  404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-LPEEMGS--------------------------  456 (565)
T ss_pred             hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-cchhhhh--------------------------
Confidence                                 2455667788899999999887764 3433333                          


Q ss_pred             ccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598          336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV  415 (536)
Q Consensus       336 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  415 (536)
                        +..|+.|+++.|.+. ..|..+-.+..++.+-.++|++....++.+.++.+|..|||.+|.+. .+|..++++.+|++
T Consensus       457 --lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h  532 (565)
T KOG0472|consen  457 --LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH  532 (565)
T ss_pred             --hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence              456999999999887 67887777788888888899999888888999999999999999998 78888999999999


Q ss_pred             EEccCCcCc
Q 045598          416 FSVAYNNLS  424 (536)
Q Consensus       416 L~l~~N~l~  424 (536)
                      |++.+|++.
T Consensus       533 LeL~gNpfr  541 (565)
T KOG0472|consen  533 LELDGNPFR  541 (565)
T ss_pred             EEecCCccC
Confidence            999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=5.2e-32  Score=270.64  Aligned_cols=400  Identities=28%  Similarity=0.323  Sum_probs=223.4

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      |||++|.+. .+|..+..+..|+.|.++.|.+. .+|.+... +++|+++.|..|.+. ..|..+..+++|++|++++|.
T Consensus        50 l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~  125 (1081)
T KOG0618|consen   50 LDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNH  125 (1081)
T ss_pred             eeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhc
Confidence            566666663 66666777777777777777776 66655544 667777777777665 566677777777777777777


Q ss_pred             CccccchhHhhCCCCCCEEEcc-------------------cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCC
Q 045598           82 LTGEIPEHLAVGCVNLRFLALS-------------------NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC  142 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~-------------------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l  142 (536)
                      +. .+|..+. .+..++.+..+                   .|.+.+.....+..++.  .|+|++|.+. ..  .+..+
T Consensus       126 f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~--dls~~  198 (1081)
T KOG0618|consen  126 FG-PIPLVIE-VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL--DLSNL  198 (1081)
T ss_pred             cC-CCchhHH-hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh--hhhhc
Confidence            66 6665442 33333333333                   33333333333333333  4666666654 11  12223


Q ss_pred             CccC--------------------eeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCc
Q 045598          143 SSLE--------------------GLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  202 (536)
Q Consensus       143 ~~L~--------------------~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  202 (536)
                      ++|+                    .|+.+.|.+....+.  ....+|++++++.|++.. .|.++..+.+|+.++...|.
T Consensus       199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             cchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchh
Confidence            3333                    333333333211111  112355666666666653 33566666666666666666


Q ss_pred             CcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCC-ccEEEcccccccccccc
Q 045598          203 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQ-LSHLILGHNNLEGEVPI  281 (536)
Q Consensus       203 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~  281 (536)
                      +.......+...+|+.+....|.+. .+++. ..+.+.|++|++..|.+....+..+..... ++.|+.+.|++......
T Consensus       276 l~~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  276 LVALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             HHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence            6555445555556666666666552 34433 444666666666666665333322222222 44444444444322111


Q ss_pred             cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccC
Q 045598          282 QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN  361 (536)
Q Consensus       282 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  361 (536)
                      .=...+.|+.|.+.+|.+++..-+.+.                            ...+|+.|+|++|.+.......+.+
T Consensus       354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~----------------------------~~~hLKVLhLsyNrL~~fpas~~~k  405 (1081)
T KOG0618|consen  354 EENNHAALQELYLANNHLTDSCFPVLV----------------------------NFKHLKVLHLSYNRLNSFPASKLRK  405 (1081)
T ss_pred             cchhhHHHHHHHHhcCcccccchhhhc----------------------------cccceeeeeecccccccCCHHHHhc
Confidence            111234455555555554433222221                            1567777777777776544555677


Q ss_pred             CCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccc
Q 045598          362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS  441 (536)
Q Consensus       362 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~  441 (536)
                      ++.|++|+||+|+++ .+|+++.+++.|++|...+|++. ..| .+..++.|+++|++.|+++...-......+.|++++
T Consensus       406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence            777777777777777 45677777777777777777776 555 567777888888888877753332222346777788


Q ss_pred             cccCcCC
Q 045598          442 YEGNTFL  448 (536)
Q Consensus       442 l~~n~~~  448 (536)
                      ++||+|.
T Consensus       483 lSGN~~l  489 (1081)
T KOG0618|consen  483 LSGNTRL  489 (1081)
T ss_pred             ccCCccc
Confidence            8888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-30  Score=257.99  Aligned_cols=422  Identities=25%  Similarity=0.334  Sum_probs=262.5

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      ++|++.+++. .+|..+.....++.|+++.|.+. ..|-.+.+..-+|+.|+++.|.+. ..|..+..+.+|+.|+++.|
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence            4566777765 66666555555777777776665 555555554445777777777665 56666777777777777777


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC-------
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN-------  153 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-------  153 (536)
                      .+. .+|... ..+.+|+++.|..|.+. ..|..+..+++|++|+++.|.+. ..|..+..+..++.+..++|       
T Consensus        79 ~i~-~vp~s~-~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg  154 (1081)
T KOG0618|consen   79 YIR-SVPSSC-SNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG  154 (1081)
T ss_pred             hHh-hCchhh-hhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc
Confidence            776 666544 56677777777777666 45666667777777777777665 34444444444444444443       


Q ss_pred             ------------cCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEc--------------------cCC
Q 045598          154 ------------SLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI--------------------SDN  201 (536)
Q Consensus       154 ------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l--------------------~~n  201 (536)
                                  .+.+.++..+..++.  .|++..|.+..   ..+..+.+|+.+..                    +.|
T Consensus       155 ~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n  229 (1081)
T KOG0618|consen  155 QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHN  229 (1081)
T ss_pred             cccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccC
Confidence                        333333333333333  35555555441   12223333333333                    333


Q ss_pred             cCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccc
Q 045598          202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI  281 (536)
Q Consensus       202 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  281 (536)
                      .++ .....+...+++.++++.|.+. .++ .+...+.+|+.++...|.+. ..|..+...++|+.|....|.+. .+|.
T Consensus       230 ~l~-~~~~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~  304 (1081)
T KOG0618|consen  230 PLT-TLDVHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP  304 (1081)
T ss_pred             cce-eeccccccccceeeecchhhhh-cch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC
Confidence            333 1122223344555555555443 223 33445555555555555553 33333444455555555555555 4566


Q ss_pred             cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeecccee--eeccccccccceEEccCCcCcCCCcccc
Q 045598          282 QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAY--IYQGKVLSLLSGLDLSCNKLIGPIPLQI  359 (536)
Q Consensus       282 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~  359 (536)
                      ...+..+|++|++..|.+...++..+.....     ....+....+.++.  .......+.|+.|++.+|.+++.....+
T Consensus       305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~-----~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l  379 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA-----SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL  379 (1081)
T ss_pred             cccccceeeeeeehhccccccchHHHhhhhH-----HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence            6677889999999999887554422221111     01111111111111  1223446789999999999999888889


Q ss_pred             cCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCc
Q 045598          360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE  439 (536)
Q Consensus       360 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  439 (536)
                      .+.++|+.|+|++|++.......+.+++.|++|+||||+++ .+|+.+..++.|++|...+|++. ..| .+..++.++.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence            99999999999999999766667899999999999999999 78899999999999999999999 556 4668899999


Q ss_pred             cccccCcC
Q 045598          440 SSYEGNTF  447 (536)
Q Consensus       440 l~l~~n~~  447 (536)
                      ++++-|..
T Consensus       457 lDlS~N~L  464 (1081)
T KOG0618|consen  457 LDLSCNNL  464 (1081)
T ss_pred             Eecccchh
Confidence            99987743

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-29  Score=229.83  Aligned_cols=410  Identities=18%  Similarity=0.199  Sum_probs=269.8

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      ..++.++-+++ ++|.++..   ....++|..|.|+.+.+.+|+.+++||.|||++|+|+ .|.+..|.++.++..|.+-
T Consensus        49 ~~VdCr~~GL~-eVP~~LP~---~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   49 GIVDCRGKGLT-EVPANLPP---ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             ceEEccCCCcc-cCcccCCC---cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence            35677777787 88888875   7788999999999888889999999999999999998 7777777899888877766


Q ss_pred             c-CccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccc--
Q 045598          104 N-NNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE--  180 (536)
Q Consensus       104 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--  180 (536)
                      + |+|+......|.++..|+.|.+..|++..+..++|..++++..|.+.+|.+......+|..+.+++++.+..|.+.  
T Consensus       124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            5 9999888899999999999999999998888889999999999999999988555558888999999988887632  


Q ss_pred             ----------cCCcccccCCCCCCEEEccCCcCcccCCCCCCCC--CccEEEccCCCCCCcccccccCCCCCccEEEccC
Q 045598          181 ----------GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL--SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY  248 (536)
Q Consensus       181 ----------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  248 (536)
                                ...+..+++.....-..+.+.++..+.+.-+...  ++.+--.+.+...+..|...|..+++|+.|++++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                      1222333333333333333333333322222111  2221122233333455666678888888888888


Q ss_pred             CcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccc-eeE----
Q 045598          249 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE-KFE----  323 (536)
Q Consensus       249 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~----  323 (536)
                      |++++..+.+|.+...+++|.|..|++...-...|.++..|+.|++.+|+|+...|..|..........+.. -+.    
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence            888887788888888888888888888766666778888888888888888877777776644333222111 000    


Q ss_pred             -------EeeccceeeeccccccccceEEccCCcCcC---CCcccc---------cCCCCCCEE-eCCCccCCCCCcccc
Q 045598          324 -------FTTKNIAYIYQGKVLSLLSGLDLSCNKLIG---PIPLQI---------GNLTRIQTL-NLSHNNLTGSIPSTF  383 (536)
Q Consensus       324 -------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~---------~~l~~L~~L-~L~~n~l~~~~~~~~  383 (536)
                             +........+.-+.+..++.+.++...+.+   ..|+..         ..++-+.+. .-|+..+. .+|..+
T Consensus       364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i  442 (498)
T KOG4237|consen  364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI  442 (498)
T ss_pred             hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence                   001112222333445567777777665432   112211         112222222 22222222 333332


Q ss_pred             cCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccC
Q 045598          384 SNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  445 (536)
Q Consensus       384 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n  445 (536)
                      .  ..-.++++.+|.++ .+|+.  .+.+| .+|+++|+++......+..++.+.++-++.|
T Consensus       443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2  34556788888887 55554  55667 7888888888766666666666666655544

>PLN03210 Resistant to P

Probab=99.93  E-value=3.5e-24  Score=238.36  Aligned_cols=341  Identities=21%  Similarity=0.230  Sum_probs=215.6

Q ss_pred             CCcCCCCCcCEEEccCCc------CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccch
Q 045598           15 LPIHSHKRLGMLDISNNN------FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPE   88 (536)
Q Consensus        15 ~~~~~~~~L~~L~ls~~~------~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   88 (536)
                      .+|..|++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ..++|+.|+++++.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            346777778877775442      223456655554456778877777765 456555 4577788888877776 6666


Q ss_pred             hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCC
Q 045598           89 HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR  168 (536)
Q Consensus        89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  168 (536)
                      .+ ..+++|+.|+++++......+ .+..+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ ++++
T Consensus       629 ~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        629 GV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            55 567778888887664332333 35667778888887776555667777777788888887765444556544 5777


Q ss_pred             CCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC---C---cccccccCCCCCcc
Q 045598          169 LQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH---G---QLKRGTFFNCSSLV  242 (536)
Q Consensus       169 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~  242 (536)
                      |+.|++++|......|..   ..+|+.|++++|.+.. .|....+.+|+.|.+.++...   +   .+.+..+...++|+
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            777877777543333322   3567777777777653 344445566666666553221   0   11111123345777


Q ss_pred             EEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598          243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF  322 (536)
Q Consensus       243 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  322 (536)
                      .|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|..                
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------  844 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------  844 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence            77777776666667777777777777777765444555544 5677777777776533322221                


Q ss_pred             EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                     ..+|++|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       845 ---------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ---------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ---------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                           346777777777776 466677777777777777754433556666677777777777774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=5.7e-28  Score=219.99  Aligned_cols=331  Identities=22%  Similarity=0.236  Sum_probs=217.3

Q ss_pred             EEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeeccc-
Q 045598           74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNN-  152 (536)
Q Consensus        74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-  152 (536)
                      ..+.++-.++ ++|..+   .+.-.+++|..|+|+.+++.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ 
T Consensus        50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            3445555566 666554   24566777777777777777777777777777777777777777777777776665555 


Q ss_pred             CcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccc
Q 045598          153 NSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR  232 (536)
Q Consensus       153 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  232 (536)
                      |+|++.-...|.++..++.|.+.-|++..+....|..++++..|.+.+|.+..+                        ..
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i------------------------~~  181 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI------------------------CK  181 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh------------------------cc
Confidence            777755556677777777777777777767777777777777777777766532                        22


Q ss_pred             cccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccch
Q 045598          233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL  312 (536)
Q Consensus       233 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  312 (536)
                      ..|..+..++.+.+..|.+..     ..+++.+....       ...|..+++.....-..+.+.++..+.+..|...  
T Consensus       182 ~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--  247 (498)
T KOG4237|consen  182 GTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--  247 (498)
T ss_pred             ccccchhccchHhhhcCcccc-----ccccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhh--
Confidence            224444445555544443210     00111111000       0111122222222223333333332222222110  


Q ss_pred             hhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCc-ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCE
Q 045598          313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP-LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVES  391 (536)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  391 (536)
                                               ...+..=-.+.+....+.| ..|..+++|++|+|++|.++++-+.+|+++..+++
T Consensus       248 -------------------------~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  248 -------------------------LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             -------------------------HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence                                     0001000111222222333 46899999999999999999999999999999999


Q ss_pred             EeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC---------------CC
Q 045598          392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP---------------IC  456 (536)
Q Consensus       392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~---------------~C  456 (536)
                      |.|..|++...-..+|.+++.|+.|++.+|+|++..|.+|....++.++.+-+|||.|+|.+.               .|
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C  382 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC  382 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence            999999999888889999999999999999999999999999999999999999999999874               69


Q ss_pred             CCCCCCCcccCCCCc
Q 045598          457 RSPATMSEASIGNER  471 (536)
Q Consensus       457 ~~~~~~~~~~~~~~~  471 (536)
                      ..|...++.++.+..
T Consensus       383 q~p~~~~~~~~~dv~  397 (498)
T KOG4237|consen  383 QSPGFVRQIPISDVA  397 (498)
T ss_pred             CCCchhccccchhcc
Confidence            999888777665543

>PLN03210 Resistant to P

Probab=99.92  E-value=1.8e-23  Score=232.77  Aligned_cols=342  Identities=22%  Similarity=0.260  Sum_probs=251.0

Q ss_pred             CChhHhhcCCCCcEEEccCCC------CcccCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCc
Q 045598           37 IPVEIADVLPSLYAFNNSMNA------LDGSIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG  109 (536)
Q Consensus        37 ~p~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  109 (536)
                      +....+..|++|+.|.+..+.      +...+|..|..++ +|+.|.+.++.+. .+|..+  ...+|++|++++|.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            445556668899998886543      2234566676664 6899999988887 888765  46889999999988874


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccC
Q 045598          110 HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQ  189 (536)
Q Consensus       110 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  189 (536)
                       .+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|..-...|..+ .
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence             556677889999999988764445553 7788899999998887666788888889999999998875444555544 6


Q ss_pred             CCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC-------CccchhhhCC
Q 045598          190 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-------GSISDWVDGL  262 (536)
Q Consensus       190 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~l  262 (536)
                      +++|+.|++++|...+..|..  ..+|+.|++++|.+. .+|..  ..+++|++|.+.++...       ...+..+...
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchhhhhcc
Confidence            788999999888655444433  357888888888874 45543  25678888888764321       1112223345


Q ss_pred             CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598          263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS  342 (536)
Q Consensus       263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  342 (536)
                      ++|+.|++++|.....+|..++.+++|+.|++++|...+.+|...                             .+++|+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------~L~sL~  828 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------------NLESLE  828 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------CccccC
Confidence            789999999988777788889999999999998876444444332                             167899


Q ss_pred             eEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCc
Q 045598          343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  422 (536)
Q Consensus       343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  422 (536)
                      .|++++|......|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            9999998655445542   368899999999998 577888999999999999864433567677888999999999886

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.4e-20  Score=194.98  Aligned_cols=263  Identities=27%  Similarity=0.332  Sum_probs=132.7

Q ss_pred             CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598           71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL  150 (536)
Q Consensus        71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  150 (536)
                      .-..|+++++.++ .+|..+.   .+|+.|++.+|+++....    ..++|++|++++|+++. +|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            4456666666666 5665542   356666666666664321    23566666666666653 2321   245666666


Q ss_pred             ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcc
Q 045598          151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  230 (536)
Q Consensus       151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  230 (536)
                      ++|.+. .+|..   .++|+.|++++|+++.. |.   ..++|+.|++++|++++...   ..                 
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---lp-----------------  321 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LP-----------------  321 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---Cc-----------------
Confidence            666554 23321   23455666666665532 22   13456666666665553211   11                 


Q ss_pred             cccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccccc
Q 045598          231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT  310 (536)
Q Consensus       231 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  310 (536)
                              .+|+.|++++|.+++ +|..   ..+|+.|++++|+++. +|..   .++|+.|++++|.++. +|..    
T Consensus       322 --------~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l----  380 (788)
T PRK15387        322 --------SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----  380 (788)
T ss_pred             --------ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----
Confidence                    234444455554442 2221   1345555555555552 3321   2345555555555542 1211    


Q ss_pred             chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCC
Q 045598          311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE  390 (536)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  390 (536)
                                                 +.+|+.|++++|.+++ +|..   .++|+.|++++|++++ +|..   ..+|+
T Consensus       381 ---------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~  425 (788)
T PRK15387        381 ---------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLL  425 (788)
T ss_pred             ---------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhh
Confidence                                       2245556666665553 3321   2456666666666663 3332   23456


Q ss_pred             EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCC
Q 045598          391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  430 (536)
Q Consensus       391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  430 (536)
                      .|++++|+++ .+|..+.++++|+.|++++|++++..+..
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            6666666666 45666666666666666666666554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=2.4e-20  Score=193.19  Aligned_cols=263  Identities=25%  Similarity=0.305  Sum_probs=131.5

Q ss_pred             CcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEcc
Q 045598           48 LYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE  127 (536)
Q Consensus        48 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  127 (536)
                      -..|+++.+.++ .+|..+.  ++|+.|++.+|+++ .+|.    .+++|++|++++|+++... .   ..++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc-C---cccccceeecc
Confidence            445555555555 3444333  24555555555555 4443    2355555665555555332 1   12455566666


Q ss_pred             CCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccC
Q 045598          128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL  207 (536)
Q Consensus       128 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  207 (536)
                      +|.+.. +|..   ..+|+.|++++|.+. .+|.   ..++|+.|++++|++.+. |..   ..+|+.|++++|.+++.+
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccccc
Confidence            665542 2221   234556666666665 2332   135566666666666532 221   234566666666655321


Q ss_pred             CCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCC
Q 045598          208 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN  287 (536)
Q Consensus       208 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  287 (536)
                       ..  .                         ++|+.|++++|++++ +|..   .++|+.|++++|.+.. +|..   .+
T Consensus       339 -~l--p-------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        339 -TL--P-------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             -cc--c-------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---cc
Confidence             10  0                         234444444444442 2221   1344445555555542 3321   23


Q ss_pred             CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598          288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT  367 (536)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  367 (536)
                      +|+.|++++|.+++. |..                               ++.|+.|++++|.++. +|..   ..+|+.
T Consensus       383 ~L~~LdLs~N~Lt~L-P~l-------------------------------~s~L~~LdLS~N~Lss-IP~l---~~~L~~  426 (788)
T PRK15387        383 GLKELIVSGNRLTSL-PVL-------------------------------PSELKELMVSGNRLTS-LPML---PSGLLS  426 (788)
T ss_pred             ccceEEecCCcccCC-CCc-------------------------------ccCCCEEEccCCcCCC-CCcc---hhhhhh
Confidence            455556655555532 111                               2345566666666553 3332   235666


Q ss_pred             EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhh
Q 045598          368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQL  407 (536)
Q Consensus       368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  407 (536)
                      |++++|+++ .+|+.+..+++|+.|+|++|++++..+..+
T Consensus       427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            677777766 456666666777777777777766555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.3e-18  Score=179.79  Aligned_cols=118  Identities=25%  Similarity=0.335  Sum_probs=58.7

Q ss_pred             CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598           71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL  150 (536)
Q Consensus        71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  150 (536)
                      +...|+++++.++ .+|..+   .++|+.|++++|.++.... .+.  ++|++|++++|.+. .+|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-hhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            3455666666555 555443   2355666666666553322 221  35666666666555 2333222  24566666


Q ss_pred             ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      ++|.+. .+|..+.  .+|+.|++++|++.. .|..+.  ++|+.|++++|+++
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc
Confidence            666555 3343332  355566666555552 233222  35555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4e-18  Score=177.99  Aligned_cols=161  Identities=22%  Similarity=0.293  Sum_probs=88.8

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      +...|++++++++ .+|..+.   +.++.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|+
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME  247 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence            4566667666666 5665554   25667777777666 3444332  46677777777666 5665442   3566667


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      +++|.+..+ +..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.+.. +|..+.  ++|+.|++++|.+..
T Consensus       248 Ls~N~L~~L-P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        248 LSINRITEL-PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             CcCCccCcC-ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence            766666633 22232  35666666666665 3344332  356666666666652 333222  345666666666553


Q ss_pred             CCcccccCCCCCCEEEccCCcCcc
Q 045598          182 PIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       182 ~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      . |..+  .++|+.|++++|.+++
T Consensus       319 L-P~~l--~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        319 L-PETL--PPGLKTLEAGENALTS  339 (754)
T ss_pred             C-Cccc--cccceeccccCCcccc
Confidence            2 2222  2455666666665553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.2e-19  Score=176.28  Aligned_cols=58  Identities=26%  Similarity=0.157  Sum_probs=27.9

Q ss_pred             EEEccCCcCccccchhHhhCCCCCCEEEcccCccCcc----CCccccCCCCCCEEEccCCcC
Q 045598           74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH----MFSRNFNLTNLKWLQLEGSRF  131 (536)
Q Consensus        74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i  131 (536)
                      .|+|..+.+++.--...+..+.+|++|+++++.++..    ....+...+++++++++++.+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            3555555555322223334555666666666665432    112233444455555554443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.4e-18  Score=168.76  Aligned_cols=277  Identities=25%  Similarity=0.266  Sum_probs=150.4

Q ss_pred             CEEeccccccc-cCCCCcCCCCCcCEEEccCCcCccc----CChhHhhcCCCCcEEEccCCCCcc------cCCccCCCC
Q 045598            1 TLSLVNDSLGG-PFRLPIHSHKRLGMLDISNNNFRGH----IPVEIADVLPSLYAFNNSMNALDG------SIPSSFGNM   69 (536)
Q Consensus         1 ~L~L~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~----~p~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l   69 (536)
                      +|+|..+++++ .....+..++.|+.|+++++.+++.    ++..+. ..+.++.++++.+.+.+      .++..+.++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            46777777763 3333455667788888888877532    222222 24568888888776651      233456667


Q ss_pred             CCCCEEEccCCcCccccchhHhhCCCC---CCEEEcccCccCcc----CCccccCC-CCCCEEEccCCcCccc----CCc
Q 045598           70 KFLQFLDLSNNHLTGEIPEHLAVGCVN---LRFLALSNNNLQGH----MFSRNFNL-TNLKWLQLEGSRFVGE----IPQ  137 (536)
Q Consensus        70 ~~L~~L~L~~n~l~~~~~~~~~~~l~~---L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~----~~~  137 (536)
                      ++|+.|++++|.+.+..+..+ ..+.+   |++|++++|.+...    ....+..+ ++|+.|++++|.+++.    .+.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            788888888877763333332 33333   77777777776531    12233444 6677777777766521    222


Q ss_pred             CCCCCCccCeeecccCcCCCC----CCcccCCCCCCCeEEccCCccccCC----cccccCCCCCCEEEccCCcCcccCCC
Q 045598          138 SLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQCIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGSLPS  209 (536)
Q Consensus       138 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~  209 (536)
                      .+..+++|++|++++|.+.+.    .+..+..+++|++|++++|.+.+..    ...+..+++|++|++++|.+++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            344555666777766666531    1122334456666666666654222    22334455566666666554421000


Q ss_pred             CCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC----ccchhhhCCCCccEEEccccccccc----ccc
Q 045598          210 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGE----VPI  281 (536)
Q Consensus       210 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~  281 (536)
                                         .+........+.|++|++++|.+++    .+...+..+++|+.+++++|.++..    ...
T Consensus       240 -------------------~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         240 -------------------ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             -------------------HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence                               0000101123566777777776652    1223344456677777777766633    222


Q ss_pred             cccCC-CCCCEEecCCCc
Q 045598          282 QLCEL-NQLQLLDLSNNN  298 (536)
Q Consensus       282 ~~~~l-~~L~~L~l~~n~  298 (536)
                      .+... +.|+.+++.+|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         301 SLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhhcCCchhhcccCCCC
Confidence            33333 566666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.6e-18  Score=139.50  Aligned_cols=177  Identities=27%  Similarity=0.426  Sum_probs=91.6

Q ss_pred             CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI  318 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  318 (536)
                      .+++.|.++.|+++ ..|..+..+.+|+.|++.+|++. ..|..++.++.|+.|++.-|++. ..|..|+.         
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs---------  100 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS---------  100 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC---------
Confidence            34444444444444 22223444445555555555544 34444445555555555444443 33333333         


Q ss_pred             cceeEEeeccceeeeccccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598          319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN  397 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  397 (536)
                                         ++.|+.||+++|++.. ..|..|-.+..|+.|+|++|.+. .+|..++.+++|+.|.+++|
T Consensus       101 -------------------~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  101 -------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             -------------------CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence                               3445555555544432 34555555666666666666666 45555666666666666666


Q ss_pred             cccccCchhhhCCCCCCEEEccCCcCcccCCCCcccccc---CCccccccCcCCC
Q 045598          398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFAT---FNESSYEGNTFLC  449 (536)
Q Consensus       398 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---l~~l~l~~n~~~c  449 (536)
                      .+- ..|..++.+..|+.|.+.+|+++...|+ ++.+.-   -....++.|||.-
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence            665 5566666666666666666666633332 323221   1234567788764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=8.1e-18  Score=136.62  Aligned_cols=157  Identities=27%  Similarity=0.421  Sum_probs=89.6

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598           46 PSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ  125 (536)
Q Consensus        46 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  125 (536)
                      .+++.|.+++|+++ .+|..+..+.+|++|++++|+++ .+|..+ ..+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            34455555555555 33444555555555555555555 555555 45555555555555554 4455555556666666


Q ss_pred             ccCCcCc-ccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          126 LEGSRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       126 L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      +.+|.+. ..+|..|-.+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+- ..|..++.+..|++|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            6555543 244555556666666666666665 45555666666666666666654 45566666666666666666665


Q ss_pred             ccCC
Q 045598          205 GSLP  208 (536)
Q Consensus       205 ~~~~  208 (536)
                      -.+|
T Consensus       187 vlpp  190 (264)
T KOG0617|consen  187 VLPP  190 (264)
T ss_pred             ecCh
Confidence            4433

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=4.1e-14  Score=147.57  Aligned_cols=118  Identities=35%  Similarity=0.593  Sum_probs=107.3

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  419 (536)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCcccc-ccCCccccccCcCCCCCCC-CCCC
Q 045598          420 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR  457 (536)
Q Consensus       420 ~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~~~l-~~C~  457 (536)
                      +|++++.+|..+... ..+..+++.+|+..|+++. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999877553 4566888999999998753 4564

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=2.6e-12  Score=114.24  Aligned_cols=133  Identities=27%  Similarity=0.264  Sum_probs=91.5

Q ss_pred             CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccc
Q 045598          261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL  340 (536)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (536)
                      .+..|+++++++|.|+ .+..+..-.|.++.|+++.|.+.....  +                            ..+++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L----------------------------a~L~~  330 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L----------------------------AELPQ  330 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h----------------------------hhccc
Confidence            3456778888888777 566666677788888888877663211  1                            12667


Q ss_pred             cceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC-chhhhCCCCCCEEEcc
Q 045598          341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI-PHQLVELKTLEVFSVA  419 (536)
Q Consensus       341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~  419 (536)
                      |+.||+++|.++ ....+-..+.+.++|.|++|.+.+.  +++..+-+|..||+++|+|.... -..++++|-|+.+.+.
T Consensus       331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            788888888776 3444556677888888888887743  56677778888888888876322 2346677778888888


Q ss_pred             CCcCcccC
Q 045598          420 YNNLSGEI  427 (536)
Q Consensus       420 ~N~l~~~~  427 (536)
                      +|++.+..
T Consensus       408 ~NPl~~~v  415 (490)
T KOG1259|consen  408 GNPLAGSV  415 (490)
T ss_pred             CCCccccc
Confidence            88877543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.18  E-value=1e-12  Score=119.49  Aligned_cols=176  Identities=19%  Similarity=0.197  Sum_probs=89.8

Q ss_pred             cCCCCCCEEEccCCcCccc----CCcCCCCCCccCeeecccCc---CCCCCCc-------ccCCCCCCCeEEccCCcccc
Q 045598          116 FNLTNLKWLQLEGSRFVGE----IPQSLSKCSSLEGLYLNNNS---LSGKIPR-------WLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       116 ~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~-------~~~~l~~L~~L~l~~n~~~~  181 (536)
                      ..+..++.+++++|.+...    +...+.+.++|+..++++-.   ....+|.       .+..+++|++++|++|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3556677777777765422    22334455566666665421   1112221       22334456666666655442


Q ss_pred             CCccc----ccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc---
Q 045598          182 PIPVE----FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---  254 (536)
Q Consensus       182 ~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---  254 (536)
                      ..+..    +.++..|++|.+.+|.+........ ...|..+.          .......-++|+.+....|++...   
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELA----------VNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHH----------HHhccCCCcceEEEEeeccccccccHH
Confidence            22221    2334455555555554431111000 00000000          001133456788888888877532   


Q ss_pred             -cchhhhCCCCccEEEccccccccc----ccccccCCCCCCEEecCCCcCCCC
Q 045598          255 -ISDWVDGLSQLSHLILGHNNLEGE----VPIQLCELNQLQLLDLSNNNLHGP  302 (536)
Q Consensus       255 -~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~  302 (536)
                       +...|+..+.|+.+.+..|.|...    ....|..+++|++|||++|.++..
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH
Confidence             233456677888888888877532    234567788888888888877643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=4.3e-11  Score=119.56  Aligned_cols=194  Identities=33%  Similarity=0.432  Sum_probs=101.8

Q ss_pred             EEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           25 MLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        25 ~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      .++++.+.+. ..+..+.. .+.+..+++..|.++ .++......+ +|+.|++++|.+. .+|..+ +.+++|+.|+++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence            3555555443 22222222 245666666666655 3344444443 6666666666665 554333 456666666666


Q ss_pred             cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045598          104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI  183 (536)
Q Consensus       104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  183 (536)
                      +|+++...+ .....++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .
T Consensus       172 ~N~l~~l~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~  247 (394)
T COG4886         172 FNDLSDLPK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L  247 (394)
T ss_pred             Cchhhhhhh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence            666653322 2224566666666666655 33333334445666666666432 234445555666666666655542 2


Q ss_pred             cccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598          184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  228 (536)
Q Consensus       184 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  228 (536)
                      +..+..+++++.|++++|.++.... .....+++.++++++.+..
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             cchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence            4455555666666666666654433 4445566666666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=3.7e-11  Score=102.67  Aligned_cols=111  Identities=28%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598           17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN   96 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~   96 (536)
                      +.+..+++.|+|++|.|+ .+. .+...+.+|+.|++++|.++..  ..+..+++|+.|++++|.++ .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            344556777777777776 332 3443356777777777777643  24666777777777777777 565544345677


Q ss_pred             CCEEEcccCccCccC-CccccCCCCCCEEEccCCcCc
Q 045598           97 LRFLALSNNNLQGHM-FSRNFNLTNLKWLQLEGSRFV  132 (536)
Q Consensus        97 L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~  132 (536)
                      |++|++++|++.... ...+..+++|++|++.+|.+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            777777777775422 234445566666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=5.6e-12  Score=117.90  Aligned_cols=208  Identities=22%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             CCCCcEEEccCCCCcccCC-ccCCCCCCCCEEEccCCcCccccc--hhHhhCCCCCCEEEcccCccCccCCcc-ccCCCC
Q 045598           45 LPSLYAFNNSMNALDGSIP-SSFGNMKFLQFLDLSNNHLTGEIP--EHLAVGCVNLRFLALSNNNLQGHMFSR-NFNLTN  120 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~  120 (536)
                      +++|+.+.+.++.+..... .....+++++.|||++|-+. .+.  ..+...+++|+.|+++.|.+....... -..+++
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4567777777766653221 35666777888888877655 221  234467778888888877775432222 125677


Q ss_pred             CCEEEccCCcCcccCC-cCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC-cccccCCCCCCEEEc
Q 045598          121 LKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI-PVEFCQLDLLQILDI  198 (536)
Q Consensus       121 L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l  198 (536)
                      |+.|.++.|.++.... .....+|+|+.|++++|...........-++.|++|++++|++.... ......++.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            8888888887763211 22345677888888877532233334455677888888887765332 234566777888888


Q ss_pred             cCCcCcccCC-CC------CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC
Q 045598          199 SDNNISGSLP-SC------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  253 (536)
Q Consensus       199 ~~n~~~~~~~-~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  253 (536)
                      +.+.+..+.. +.      -..++|+.|++..|++...-.-..+..+++|+.|.+..|.++.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            8777764322 11      2566788888888887543333334556778888887877763

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=1.9e-12  Score=124.81  Aligned_cols=171  Identities=30%  Similarity=0.446  Sum_probs=112.1

Q ss_pred             cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598          217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN  296 (536)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  296 (536)
                      ...+++.|.+. +++.. +..+..|+.+.+..|.+. .+|..+..+..|..++++.|++. ..|..++.++ |+.|-+++
T Consensus        78 ~~aDlsrNR~~-elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            34555556553 34433 455556666666666665 55666666667777777777766 5555566554 66777777


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT  376 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  376 (536)
                      |+++..+++ ++                            ....|..||.+.|.+. ..|..++++.+|+.|++..|++.
T Consensus       153 Nkl~~lp~~-ig----------------------------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  153 NKLTSLPEE-IG----------------------------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             CccccCCcc-cc----------------------------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence            766633322 22                            1456777888888776 45666777788888888888877


Q ss_pred             CCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598          377 GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       377 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      . .|+.+.. -.|..||++.|+++ .+|-.|..|+.|++|.|.+|+++.
T Consensus       203 ~-lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  203 D-LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             h-CCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            4 4444443 35777888888887 777778888888888888888874

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.2e-11  Score=110.02  Aligned_cols=132  Identities=33%  Similarity=0.352  Sum_probs=105.2

Q ss_pred             CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598          236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK  315 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  315 (536)
                      .....|+++|+++|.|+ .+.....-.|.++.|++++|.+... .. +..+++|+.||+++|.++......         
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~n-La~L~~L~~LDLS~N~Ls~~~Gwh---------  348 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-QN-LAELPQLQLLDLSGNLLAECVGWH---------  348 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-hh-hhhcccceEeecccchhHhhhhhH---------
Confidence            34467999999999998 5566677789999999999999843 32 778999999999999877432211         


Q ss_pred             ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCC-cccccCCCCCCEEeC
Q 045598          316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKYVESLDL  394 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  394 (536)
                                          ..+.+++.|.+++|.+..  -..++.+-+|..||+++|+|.... ...++++|.|+++.|
T Consensus       349 --------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  349 --------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             --------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence                                126789999999998753  345777889999999999998432 346899999999999


Q ss_pred             CCCcccc
Q 045598          395 SNNKLNG  401 (536)
Q Consensus       395 ~~n~l~~  401 (536)
                      .+|.+.+
T Consensus       407 ~~NPl~~  413 (490)
T KOG1259|consen  407 TGNPLAG  413 (490)
T ss_pred             cCCCccc
Confidence            9999983

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=7.9e-11  Score=117.69  Aligned_cols=199  Identities=34%  Similarity=0.462  Sum_probs=115.2

Q ss_pred             eEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCc
Q 045598          171 CIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR  250 (536)
Q Consensus       171 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  250 (536)
                      .+....+.+. .....+...+.++.+++.+|.++...+......                        ++|+.|++++|.
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~  151 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK  151 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence            4555555553 122333444566666666666654333222221                        256666666666


Q ss_pred             CCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccce
Q 045598          251 LNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIA  330 (536)
Q Consensus       251 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (536)
                      +. .++..+..+++|+.|++++|++. .++......+.|+.|++++|.+....+.. .                      
T Consensus       152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~----------------------  206 (394)
T COG4886         152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E----------------------  206 (394)
T ss_pred             hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h----------------------
Confidence            65 33344556666666666666666 34444445666777777776666433321 0                      


Q ss_pred             eeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC
Q 045598          331 YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL  410 (536)
Q Consensus       331 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  410 (536)
                            .+..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..+++++.|++++|+++....  +..+
T Consensus       207 ------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~  276 (394)
T COG4886         207 ------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSL  276 (394)
T ss_pred             ------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--cccc
Confidence                  0344666777776433 345556666777777777777663 35566677777777777777764433  6667


Q ss_pred             CCCCEEEccCCcCcccCCC
Q 045598          411 KTLEVFSVAYNNLSGEIPE  429 (536)
Q Consensus       411 ~~L~~L~l~~N~l~~~~~~  429 (536)
                      .+++.|++++|.++...|.
T Consensus       277 ~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         277 TNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             CccCEEeccCccccccchh
Confidence            7777777777777655444

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=2.3e-10  Score=119.62  Aligned_cols=113  Identities=33%  Similarity=0.510  Sum_probs=99.7

Q ss_pred             CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598          288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT  367 (536)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  367 (536)
                      .++.|+|++|.+.+..|..+..                            +++|+.|++++|.+.+.+|..++.+++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~----------------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~  470 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK----------------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEV  470 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC----------------------------CCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            3678888888888887776654                            679999999999999999999999999999


Q ss_pred             EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC-CCCCEEEccCCcCcccCC
Q 045598          368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~  428 (536)
                      |+|++|++++.+|+.+..+++|+.|+|++|++++.+|..+... .++..+++.+|...+..|
T Consensus       471 LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             EECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999999999999988764 467889999998665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=1.5e-12  Score=125.37  Aligned_cols=176  Identities=28%  Similarity=0.436  Sum_probs=133.4

Q ss_pred             CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCC
Q 045598           19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLR   98 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   98 (536)
                      .+..-...|++.|++. .+|..+.. +-.|+.+.+..|.+. .+|.+++++..|.+|+|+.|+++ .+|..++  .--|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence            3455567788888887 77877665 447777788888877 67788888888888888888888 7887773  34688


Q ss_pred             EEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598           99 FLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH  178 (536)
Q Consensus        99 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  178 (536)
                      .|.+++|+++ ..+..++.+..|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. ..|..+..+ .|..|+++.|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence            8888888887 45556667788888888888877 55666778888888888888876 456556644 47788888888


Q ss_pred             cccCCcccccCCCCCCEEEccCCcCcc
Q 045598          179 LEGPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      +. ..|-.|..|..|++|.|.+|.+..
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCCC
Confidence            87 567788888888888888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.1e-11  Score=100.25  Aligned_cols=109  Identities=25%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             cccccceEEccCCcCcCCCccccc-CCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCE
Q 045598          337 VLSLLSGLDLSCNKLIGPIPLQIG-NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV  415 (536)
Q Consensus       337 ~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  415 (536)
                      .+..+++|+|.+|.++..  +.++ .+.+|+.|++++|.++..  +.+..++.|++|++++|+|+++.+.....+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            356789999999999853  3454 578999999999999954  56888999999999999999654433346899999


Q ss_pred             EEccCCcCcccCC-CCccccccCCccccccCcCCC
Q 045598          416 FSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       416 L~l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      |++++|++..... ..+..+++++.+++.|||..-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999999986332 345568889999999999743

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=2.7e-11  Score=110.36  Aligned_cols=252  Identities=22%  Similarity=0.196  Sum_probs=128.5

Q ss_pred             cCCCCCcCEEEccCCcCcccCChhHhhc---CCCCcEEEccCCCCcc----cCC-------ccCCCCCCCCEEEccCCcC
Q 045598           17 IHSHKRLGMLDISNNNFRGHIPVEIADV---LPSLYAFNNSMNALDG----SIP-------SSFGNMKFLQFLDLSNNHL   82 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~---l~~L~~L~l~~n~~~~----~~~-------~~~~~l~~L~~L~L~~n~l   82 (536)
                      +..+..++.+++|+|.+...-...+...   .+.|+..+++. -++|    .+|       .++.++++|++||||+|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3455666777777766643222222222   23555555543 1222    222       2234455666666666655


Q ss_pred             ccccchh---HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCC
Q 045598           83 TGEIPEH---LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI  159 (536)
Q Consensus        83 ~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  159 (536)
                      ....++.   +..++..|++|.|.+|.+.......+.  ..|..|.  .       ......-+.|+++....|++....
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--V-------NKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--H-------HhccCCCcceEEEEeecccccccc
Confidence            4222221   223455555555555554322111111  0011111  0       011223345666666666654221


Q ss_pred             C----cccCCCCCCCeEEccCCccccC----CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccc
Q 045598          160 P----RWLGNLTRLQCIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK  231 (536)
Q Consensus       160 ~----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  231 (536)
                      .    ..|...+.|+.+.+..|.|...    ....|..+++|+.|++.+|.++....                    ..-
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs--------------------~~L  233 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS--------------------VAL  233 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH--------------------HHH
Confidence            1    2345556666676666665421    12345566677777776666542211                    111


Q ss_pred             ccccCCCCCccEEEccCCcCCCccchhh-----hCCCCccEEEcccccccccc----cccccCCCCCCEEecCCCcCC
Q 045598          232 RGTFFNCSSLVTLDLSYNRLNGSISDWV-----DGLSQLSHLILGHNNLEGEV----PIQLCELNQLQLLDLSNNNLH  300 (536)
Q Consensus       232 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~  300 (536)
                      ..+++.+++|++|++++|.+.......+     ...|+|+.|.|.+|.++...    .......+.|+.|++++|++.
T Consensus       234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            2236667788888888888765433322     23678888888888887322    223445688888889888874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=1.7e-10  Score=123.22  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=25.2

Q ss_pred             cccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC
Q 045598          337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS  378 (536)
Q Consensus       337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  378 (536)
                      +.++|+.|.+..+.....+......+..++.+.+..+.+.+.
T Consensus       768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            356777777777766555544455555566555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.02  E-value=3.1e-10  Score=121.20  Aligned_cols=180  Identities=25%  Similarity=0.299  Sum_probs=107.7

Q ss_pred             CCCcCEEEccCCc--CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598           20 HKRLGMLDISNNN--FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL   97 (536)
Q Consensus        20 ~~~L~~L~ls~~~--~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   97 (536)
                      ++.|+.|-+.+|.  +. .++..++..+|.|++||+++|.--+.+|..++++-+||+|+++++.+. .+|..+ +.+..|
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L  620 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKL  620 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhh
Confidence            4578888887775  44 677777777888888888877655577888888888888888888887 788777 677888


Q ss_pred             CEEEcccCccCccCCccccCCCCCCEEEccCCcCc--ccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCC----e
Q 045598           98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ----C  171 (536)
Q Consensus        98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~  171 (536)
                      .+|++..+.-....+.....+++|++|.+......  ...-..+.++.+|+.+.......  ..-..+..++.|.    .
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            88888776654444555556788888887665421  11112233444444444432221  0001122233332    2


Q ss_pred             EEccCCccccCCcccccCCCCCCEEEccCCcCcc
Q 045598          172 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       172 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      +.+..+... ..+..+..+.+|+.|.+.++.+..
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            222222211 234455666777777777776653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3.9e-11  Score=112.34  Aligned_cols=113  Identities=26%  Similarity=0.178  Sum_probs=57.4

Q ss_pred             CCCCCCEEEccCCcCcccCCCCC--CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCcc
Q 045598          189 QLDLLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLS  266 (536)
Q Consensus       189 ~l~~L~~L~l~~n~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  266 (536)
                      .+++|+.|+++.|++........  ....++.|.++.|.++-.--......+|+|+.|+++.|............+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            44455555555554432211111  3344555555555543111111244667777777777743223333344456677


Q ss_pred             EEEcccccccccc-cccccCCCCCCEEecCCCcCCC
Q 045598          267 HLILGHNNLEGEV-PIQLCELNQLQLLDLSNNNLHG  301 (536)
Q Consensus       267 ~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~  301 (536)
                      +|+|++|.+.... ......++.|+.|+++.+.+.+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcch
Confidence            7777777765322 1234556677777777666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=2.4e-10  Score=80.25  Aligned_cols=60  Identities=42%  Similarity=0.630  Sum_probs=34.5

Q ss_pred             CCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598          364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  423 (536)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l  423 (536)
                      +|++|++++|+++...++.|.++++|++|++++|+++.+.+++|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455555555555554445555556666666666655555555555666666666655543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=4.4e-10  Score=78.90  Aligned_cols=61  Identities=51%  Similarity=0.628  Sum_probs=57.3

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL  399 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  399 (536)
                      ++|++|++++|.+....+..|.++++|++|++++|.++...++.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988888999999999999999999988889999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=2.4e-10  Score=114.32  Aligned_cols=245  Identities=30%  Similarity=0.295  Sum_probs=128.3

Q ss_pred             CCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEc
Q 045598          119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI  198 (536)
Q Consensus       119 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  198 (536)
                      ..++.++++.|.+.. .-..+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|..+.  .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            334444444444432 112234445555555555555421 111444555555555555554332  2333444555555


Q ss_pred             cCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc
Q 045598          199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE  278 (536)
Q Consensus       199 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  278 (536)
                      ++|.+...                        ..  +..+++|+.+++++|.+....+.....+.+++.+.+.+|.+...
T Consensus       148 ~~N~i~~~------------------------~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  148 SGNLISDI------------------------SG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccCcchhc------------------------cC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            55554421                        11  33456666777777766643331035566677777777766522


Q ss_pred             ccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc--ccceEEccCCcCcCCCc
Q 045598          279 VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS--LLSGLDLSCNKLIGPIP  356 (536)
Q Consensus       279 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~  356 (536)
                        ..+..+..+..+++..|.++..-+...                              +.  .|+.+++++|.+.. .+
T Consensus       202 --~~~~~~~~l~~~~l~~n~i~~~~~l~~------------------------------~~~~~L~~l~l~~n~i~~-~~  248 (414)
T KOG0531|consen  202 --EGLDLLKKLVLLSLLDNKISKLEGLNE------------------------------LVMLHLRELYLSGNRISR-SP  248 (414)
T ss_pred             --cchHHHHHHHHhhcccccceeccCccc------------------------------chhHHHHHHhcccCcccc-cc
Confidence              122333344444666666553221100                              11  26777777777763 22


Q ss_pred             ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc---Cchh-hhCCCCCCEEEccCCcCcccCC
Q 045598          357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK---IPHQ-LVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      ..+..+..+..|++.+|++...  ..+...+.+..+..+.|++...   .... ....++++.+.+..|++....+
T Consensus       249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            4566677788888888877743  3455666777777777776521   1111 3455677777788887776544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.84  E-value=3.1e-10  Score=113.50  Aligned_cols=177  Identities=27%  Similarity=0.244  Sum_probs=113.8

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH  313 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  313 (536)
                      +..++.|+.|++++|.+...  ..+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.+........      
T Consensus       136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~------  206 (414)
T KOG0531|consen  136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL------  206 (414)
T ss_pred             hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH------
Confidence            45666788889999888743  345557888888999888874433 2 4677888888888887763322111      


Q ss_pred             hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC--CCEEeCCCccCCCCCcccccCCCCCCE
Q 045598          314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR--IQTLNLSHNNLTGSIPSTFSNLKYVES  391 (536)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~  391 (536)
                                              ...+..+++..|.+....+  +..+..  |+.+++++|++. ..++.+..++.+..
T Consensus       207 ------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~  259 (414)
T KOG0531|consen  207 ------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPV  259 (414)
T ss_pred             ------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccc
Confidence                                    2344555777777663322  222333  889999999998 34467788889999


Q ss_pred             EeCCCCcccccCchhhhCCCCCCEEEccCCcCccc---CCCC-ccccccCCccccccCcCCC
Q 045598          392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE---IPEW-TAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~l~l~~n~~~c  449 (536)
                      |++++|++....  .+...+.+..+....|.+...   .... ......+....+.+||..-
T Consensus       260 l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  260 LDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            999999886432  234556666677777776631   1111 3344556666666666443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=1e-09  Score=109.23  Aligned_cols=108  Identities=29%  Similarity=0.340  Sum_probs=84.8

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      ++.++.|+|++|+++...  .+..++.|+.|||++|.+.....-...++. |+.|.+++|.++..  ..+.++.+|+.||
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccc
Confidence            678999999999998544  678899999999999999854333445555 99999999998743  4578999999999


Q ss_pred             ccCCcCcccCC-CCccccccCCccccccCcCCCC
Q 045598          418 VAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       418 l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      +++|-|.+... ..+..+..+..+.++|||..|.
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99998876322 1123456778899999999985

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.1e-09  Score=95.91  Aligned_cols=87  Identities=26%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCCCCCCEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFL  100 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L  100 (536)
                      +|++||||...++..--..+...+.+|+.|++.++.+.+.+...+++..+|+.|+++.+. ++..--..++.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666665543344444445666666666666666555566666666666666642 3322223344566666666


Q ss_pred             EcccCccC
Q 045598          101 ALSNNNLQ  108 (536)
Q Consensus       101 ~L~~n~l~  108 (536)
                      +++.|.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=5.3e-08  Score=87.15  Aligned_cols=197  Identities=21%  Similarity=0.188  Sum_probs=108.2

Q ss_pred             hCCCCCCEEEcccCccCcc--CCccccCCCCCCEEEccCCcCcccCCcCC-CCCCccCeeecccCcCCCC-CCcccCCCC
Q 045598           92 VGCVNLRFLALSNNNLQGH--MFSRNFNLTNLKWLQLEGSRFVGEIPQSL-SKCSSLEGLYLNNNSLSGK-IPRWLGNLT  167 (536)
Q Consensus        92 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~l~  167 (536)
                      ..++.++++||.+|.++.-  ....+.+++.|++|+++.|.+...+ ... ....+|+.|-+.+..+.-. ....+..+|
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            3455666666666666531  1223346666666766666655322 222 2345666666666554321 123345566


Q ss_pred             CCCeEEccCCcccc--CCcccccCC-CCCCEEEccCC---------cCcccCCCCCCCCCccEEEccCCCCCCccccccc
Q 045598          168 RLQCIIMPNNHLEG--PIPVEFCQL-DLLQILDISDN---------NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF  235 (536)
Q Consensus       168 ~L~~L~l~~n~~~~--~~~~~~~~l-~~L~~L~l~~n---------~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  235 (536)
                      .+++|+++.|....  ......... +.++++....|         ++...      ++++..+.+..|.+........+
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~------Fpnv~sv~v~e~PlK~~s~ek~s  220 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI------FPNVNSVFVCEGPLKTESSEKGS  220 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh------cccchheeeecCcccchhhcccC
Confidence            66777666663210  111111111 12333333333         22222      34556666666655444444446


Q ss_pred             CCCCCccEEEccCCcCCCcc-chhhhCCCCccEEEcccccccccccc------cccCCCCCCEEecC
Q 045598          236 FNCSSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVPI------QLCELNQLQLLDLS  295 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~  295 (536)
                      ..+|.+.-|+|+.+++.... .+.+.+++.|..|.++++++.+....      .+.++++++.|+=+
T Consensus       221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            67777788899988887432 35677889999999999988643221      25667788877654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.36  E-value=8.5e-09  Score=102.79  Aligned_cols=160  Identities=23%  Similarity=0.210  Sum_probs=94.6

Q ss_pred             CCCcCCCCCcCEEEccCCcCccc---------CChhHhhc-------------------C--CCCcEEEccCCCCcccCC
Q 045598           14 RLPIHSHKRLGMLDISNNNFRGH---------IPVEIADV-------------------L--PSLYAFNNSMNALDGSIP   63 (536)
Q Consensus        14 ~~~~~~~~~L~~L~ls~~~~~~~---------~p~~~~~~-------------------l--~~L~~L~l~~n~~~~~~~   63 (536)
                      |..+..+..|++|.+.++++...         +..-|+..                   +  ..|...+.+.|.+. ...
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence            55677889999999999876520         11111100                   0  02333344444444 233


Q ss_pred             ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCC
Q 045598           64 SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS  143 (536)
Q Consensus        64 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  143 (536)
                      .++.-++.|+.|+|++|+++ .+.  ....+++|++|||++|.+.....-...+++ |+.|.+++|.++..  ..+.++.
T Consensus       181 ~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk  254 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK  254 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence            44555677777777777776 333  335777777777777777755444444555 77777777766533  3466777


Q ss_pred             ccCeeecccCcCCCCC-CcccCCCCCCCeEEccCCccc
Q 045598          144 SLEGLYLNNNSLSGKI-PRWLGNLTRLQCIIMPNNHLE  180 (536)
Q Consensus       144 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~  180 (536)
                      +|+.||+++|-+.+.. -..++.+..|+.|++.+|.+.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            7777777777654211 122344566677777776553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=7.7e-08  Score=86.15  Aligned_cols=202  Identities=18%  Similarity=0.135  Sum_probs=98.6

Q ss_pred             CCCCCEEEccCCcCccccch--hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCccc-CCcCCCCCCcc
Q 045598           69 MKFLQFLDLSNNHLTGEIPE--HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE-IPQSLSKCSSL  145 (536)
Q Consensus        69 l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L  145 (536)
                      +++++.+||.+|.++ ...+  .+..+++.|+.|+++.|.+...+..--...++|++|.|.+..+.-. ....+..+|.+
T Consensus        70 ~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            345555555555554 2221  2234555555666655555432221112345566666655554321 11233445555


Q ss_pred             CeeecccCcCCCC--CCcccCCC-CCCCeEEccCCcccc--CCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccE
Q 045598          146 EGLYLNNNSLSGK--IPRWLGNL-TRLQCIIMPNNHLEG--PIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQ  218 (536)
Q Consensus       146 ~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~  218 (536)
                      ++|.++.|.+...  ........ +.+++++...|....  .....-.-++++..+.+..|.+......  .-..+.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            6665555532110  01111111 244445444442210  0001112345666677776766533221  113455667


Q ss_pred             EEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch------hhhCCCCccEEEcc
Q 045598          219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD------WVDGLSQLSHLILG  271 (536)
Q Consensus       219 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~  271 (536)
                      |.++.+++...-....+.+++.|.-|.++++++.+....      .++.+++++.|+=+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            777777776555555577888888888888887654322      23346666666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9.8e-09  Score=91.77  Aligned_cols=179  Identities=22%  Similarity=0.229  Sum_probs=114.8

Q ss_pred             CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEE
Q 045598          215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLL  292 (536)
Q Consensus       215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L  292 (536)
                      .++.++++...++...-...++.|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--..  ....+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            3666676666654433334467788888888888888887777788888888888887753211  22346778888888


Q ss_pred             ecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCc--CcC-CCcccccCCCCCCEEe
Q 045598          293 DLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--LIG-PIPLQIGNLTRIQTLN  369 (536)
Q Consensus       293 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~  369 (536)
                      +++.|.+....-...-.                          ..-+.|+.|+++++.  +.. .+......++.|..||
T Consensus       266 NlsWc~l~~~~Vtv~V~--------------------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVA--------------------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             CchHhhccchhhhHHHh--------------------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence            88888655322111000                          113567888888763  211 1112235678888888


Q ss_pred             CCCccCC-CCCcccccCCCCCCEEeCCCCcccccCchhh---hCCCCCCEEEccCC
Q 045598          370 LSHNNLT-GSIPSTFSNLKYVESLDLSNNKLNGKIPHQL---VELKTLEVFSVAYN  421 (536)
Q Consensus       370 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~N  421 (536)
                      |++|..- .-....|-.++.|++|.++.|-.  ++|..+   ...|+|.+||+.++
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            8888543 22233456678888888887753  555543   45678888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=7.7e-08  Score=76.08  Aligned_cols=60  Identities=23%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                      +.++.|++++|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34555555555555 34444555555555555555555 33444444555555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.19  E-value=1.4e-07  Score=83.35  Aligned_cols=175  Identities=15%  Similarity=0.167  Sum_probs=87.3

Q ss_pred             CCCCCCEEEccCCcCcccCC----cCCCCCCccCeeecccCcC---CCCCC-------cccCCCCCCCeEEccCCccccC
Q 045598          117 NLTNLKWLQLEGSRFVGEIP----QSLSKCSSLEGLYLNNNSL---SGKIP-------RWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       117 ~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~-------~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      .+..++.++|++|.|.....    ..+.+-.+|+..+++.-..   .+.++       ..+..+|+|+..++++|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            45677778888877653322    2344445666666654211   11111       2234556666666666655433


Q ss_pred             Ccc----cccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc--
Q 045598          183 IPV----EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS--  256 (536)
Q Consensus       183 ~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--  256 (536)
                      .|.    .+++-..|.+|.+++|.+......-. ...|.+|  .      . . .....-|.|+..+...|++..-..  
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri-gkal~~l--a------~-n-KKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI-GKALFHL--A------Y-N-KKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHH-HHHHHHH--H------H-H-hhhccCCCceEEEeccchhccCcHHH
Confidence            332    23344556666666655431110000 0000000  0      0 0 002344678888888777652211  


Q ss_pred             --hhhhCCCCccEEEcccccccccc-----cccccCCCCCCEEecCCCcCCCC
Q 045598          257 --DWVDGLSQLSHLILGHNNLEGEV-----PIQLCELNQLQLLDLSNNNLHGP  302 (536)
Q Consensus       257 --~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~  302 (536)
                        ..+..-.+|+.+.+..|.|....     ...+..+.+|+.||+++|.++..
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence              12333357777888777765321     12244567788888888776643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=9.1e-08  Score=75.67  Aligned_cols=111  Identities=20%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV  418 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  418 (536)
                      ..|+..++++|.+....+.--...+..+.|++++|.++ ..|+.+..+++|+.|+++.|.+. ..|..+..+.+|-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            46777899999888544433344568999999999999 46677999999999999999998 77888888999999999


Q ss_pred             cCCcCcccCCCCccccccC-CccccccCcCCCCCCC
Q 045598          419 AYNNLSGEIPEWTAQFATF-NESSYEGNTFLCGLPL  453 (536)
Q Consensus       419 ~~N~l~~~~~~~~~~~~~l-~~l~l~~n~~~c~~~l  453 (536)
                      -+|.+. .+|..+ ..+++ -..++..+||--+|+.
T Consensus       131 ~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  131 PENARA-EIDVDL-FYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             CCCccc-cCcHHH-hccccHHHHHhcCCcccccCcc
Confidence            999887 444432 22332 2345566777766653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=6e-07  Score=79.50  Aligned_cols=164  Identities=21%  Similarity=0.213  Sum_probs=99.0

Q ss_pred             CCCCCCccCeeecccCcCCCCCC----cccCCCCCCCeEEccCCccccCCcc-------------cccCCCCCCEEEccC
Q 045598          138 SLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTRLQCIIMPNNHLEGPIPV-------------EFCQLDLLQILDISD  200 (536)
Q Consensus       138 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~  200 (536)
                      ++.+|++|+..+++.|.+....|    +.+++-+.|.+|.+++|.+..+...             ...+-|.|+.+....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            45566777777777776654333    2345566777777777765422111             123456777777777


Q ss_pred             CcCcccCCCCC-----CCCCccEEEccCCCCCCc----ccccccCCCCCccEEEccCCcCCCc----cchhhhCCCCccE
Q 045598          201 NNISGSLPSCF-----HPLSIKQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLNGS----ISDWVDGLSQLSH  267 (536)
Q Consensus       201 n~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  267 (536)
                      |++..-....+     ....|+.+.+..|.|...    +...-+..+.+|+.||+++|.++-.    ....+..++.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            77652221111     224677777777766432    1111145678899999999987643    2344556778899


Q ss_pred             EEcccccccccccccc------cCCCCCCEEecCCCcCCC
Q 045598          268 LILGHNNLEGEVPIQL------CELNQLQLLDLSNNNLHG  301 (536)
Q Consensus       268 L~L~~n~l~~~~~~~~------~~l~~L~~L~l~~n~~~~  301 (536)
                      |.+.+|-++......+      ...|+|..|...+|.+.+
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            9999998875544332      135788888888887654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=3e-06  Score=88.74  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             hCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcc-cCCcCCCCCCccCeeecccCcCCCCC------CcccC
Q 045598           92 VGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKI------PRWLG  164 (536)
Q Consensus        92 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~  164 (536)
                      .++++|+.||+++++++..  .+++.+++|++|.+.+-.+.. ..-..+.++++|+.||+|........      .+.-.
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~  247 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGM  247 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcc
Confidence            3444555555555544432  344445555555544433321 00112334455555555543322110      01112


Q ss_pred             CCCCCCeEEccCCccc
Q 045598          165 NLTRLQCIIMPNNHLE  180 (536)
Q Consensus       165 ~l~~L~~L~l~~n~~~  180 (536)
                      .+|+|+.|+.++..+.
T Consensus       248 ~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDIN  263 (699)
T ss_pred             cCccccEEecCCcchh
Confidence            3566666666665544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1.4e-05  Score=67.99  Aligned_cols=81  Identities=27%  Similarity=0.285  Sum_probs=36.7

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEE
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQ  125 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  125 (536)
                      ....+|++.|.+..  ...|..++.|..|.+.+|+|+ .|...+...+++|..|.|.+|.+.... ...+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            44455555554432  123444555555555555555 444444444445555555555444321 12233344444444


Q ss_pred             ccCCc
Q 045598          126 LEGSR  130 (536)
Q Consensus       126 L~~n~  130 (536)
                      +-+|.
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            44443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=6.6e-06  Score=52.63  Aligned_cols=35  Identities=43%  Similarity=0.749  Sum_probs=13.4

Q ss_pred             CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                      |++|++++|+++. +|..+.++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            4444444444442 2223444444444444444443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.96  E-value=2.6e-05  Score=64.27  Aligned_cols=123  Identities=19%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCC
Q 045598           64 SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS  143 (536)
Q Consensus        64 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  143 (536)
                      .+|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +..+...++.++++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            3455555555555543 233 444444455555555555443 4444444455555555555543 22223334455555


Q ss_pred             ccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCC
Q 045598          144 SLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL  193 (536)
Q Consensus       144 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  193 (536)
                      +|+.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            5555555433 322333344444 555555543 2232444445444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.95  E-value=2.3e-05  Score=64.60  Aligned_cols=125  Identities=21%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             ChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccC
Q 045598           38 PVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN  117 (536)
Q Consensus        38 p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (536)
                      +...+..+++|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.. .+.......+..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            333444444555555543 344344445555555666655553 44 45555555555566666543 333344445555


Q ss_pred             CCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCC
Q 045598          118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL  169 (536)
Q Consensus       118 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  169 (536)
                      +++|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666666443 333344455555 666666554 3332344455555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=1.5e-05  Score=67.78  Aligned_cols=86  Identities=23%  Similarity=0.202  Sum_probs=37.9

Q ss_pred             ccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCC-cccCCCCCCCeEEccCCccccCC---cccccCC
Q 045598          115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLQCIIMPNNHLEGPI---PVEFCQL  190 (536)
Q Consensus       115 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l  190 (536)
                      |..++.|.+|.+.+|+|+.+.|..-..+++|+.|.+.+|.+..... ..+..+|+|++|.+-+|.++...   ...+..+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence            3344444444444444444443333334445555555544432110 12344455555555555443211   1234455


Q ss_pred             CCCCEEEccC
Q 045598          191 DLLQILDISD  200 (536)
Q Consensus       191 ~~L~~L~l~~  200 (536)
                      ++|+.||+++
T Consensus       140 p~l~~LDF~k  149 (233)
T KOG1644|consen  140 PSLRTLDFQK  149 (233)
T ss_pred             CcceEeehhh
Confidence            5666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=8.8e-06  Score=52.06  Aligned_cols=38  Identities=39%  Similarity=0.649  Sum_probs=32.1

Q ss_pred             CCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598          387 KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       387 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 456679999999999999999984

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=7.1e-05  Score=72.43  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=17.3

Q ss_pred             CCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598          363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN  397 (536)
Q Consensus       363 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  397 (536)
                      ++|++|++++|... ..|+.+.  .+|++|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666666554 2333322  46666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00016  Score=69.98  Aligned_cols=137  Identities=13%  Similarity=0.164  Sum_probs=87.6

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCc-CCCCCCccccccchh
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN-LHGPIPSCFDNTTLH  313 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~  313 (536)
                      +..+.++..|++++|.++ .+|.   -.++|++|.+++|.-....|..+  .++|+.|++++|. +. ..          
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL----------  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL----------  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc----------
Confidence            345688999999999877 4452   23579999998865544666544  3589999999873 32 11          


Q ss_pred             hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCC-CCCCEEeCCCcc-CCC-CCcccccCCCCCC
Q 045598          314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL-TRIQTLNLSHNN-LTG-SIPSTFSNLKYVE  390 (536)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~  390 (536)
                                              ++.|+.|+++++....     +..+ ++|+.|.+.+++ ... ..|..  -.++|+
T Consensus       111 ------------------------P~sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk  159 (426)
T PRK15386        111 ------------------------PESVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLK  159 (426)
T ss_pred             ------------------------ccccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCccc
Confidence                                    3467778887665431     1222 367888875433 211 11111  126899


Q ss_pred             EEeCCCCcccccCchhhhCCCCCCEEEccCCc
Q 045598          391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN  422 (536)
Q Consensus       391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  422 (536)
                      +|++++|... ..|..+.  .+|+.|+++.|.
T Consensus       160 ~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        160 TLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             EEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            9999999866 4444332  589999998774

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.65  E-value=1.8e-05  Score=82.99  Aligned_cols=107  Identities=22%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             CCCCEEEccCCc-CccccchhHhhCCCCCCEEEcccCccCccCCc-cccCCCCCCEEEccCCcCcccCCcCCCCCCccCe
Q 045598           70 KFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFS-RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEG  147 (536)
Q Consensus        70 ~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  147 (536)
                      .+|++||+++.. +....|..+..-+|.|+.|.+++-.+...... ...++++|..||++++.++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            456666665542 22233444444566666666655444322211 123556666666666655533  44555566665


Q ss_pred             eecccCcCCC-CCCcccCCCCCCCeEEccCCc
Q 045598          148 LYLNNNSLSG-KIPRWLGNLTRLQCIIMPNNH  178 (536)
Q Consensus       148 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~  178 (536)
                      |.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            5554433321 111223455666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.58  E-value=2.5e-06  Score=80.28  Aligned_cols=276  Identities=19%  Similarity=0.115  Sum_probs=157.8

Q ss_pred             CCcCEEEccCCcCcccCC-hhHhhcCCCCcEEEccCCC-CcccCCcc-CCCCCCCCEEEccCC-cCccccchhHhhCCCC
Q 045598           21 KRLGMLDISNNNFRGHIP-VEIADVLPSLYAFNNSMNA-LDGSIPSS-FGNMKFLQFLDLSNN-HLTGEIPEHLAVGCVN   96 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p-~~~~~~l~~L~~L~l~~n~-~~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~   96 (536)
                      ..|+.|.++++.-.+.-+ ..+...+|+++.|.+.++. +++..... -..+++|++|++..| .+++..-+.+..++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            457888888876443322 3455568888888887764 33322222 245788888888884 4554444446678888


Q ss_pred             CCEEEcccCcc-CccCC-ccccCCCCCCEEEccCCcCcccCCcCC----CCCCccCeeecccCcC-CCCCC-cccCCCCC
Q 045598           97 LRFLALSNNNL-QGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSL----SKCSSLEGLYLNNNSL-SGKIP-RWLGNLTR  168 (536)
Q Consensus        97 L~~L~L~~n~l-~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~~-~~~~~-~~~~~l~~  168 (536)
                      |++|+++.+.- ++... .-..+++.++.+.+.+|.-.+  -+++    ..+..+..+++..|.. ++... ..-..+.+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            99998887743 32111 122356667777666653211  1111    2334455566555532 22110 11134677


Q ss_pred             CCeEEccCCcc-ccCCcccc-cCCCCCCEEEccCCcCccc-CCC--CCCCCCccEEEccCCCCCCcc-cccccCCCCCcc
Q 045598          169 LQCIIMPNNHL-EGPIPVEF-CQLDLLQILDISDNNISGS-LPS--CFHPLSIKQVHLSKNMLHGQL-KRGTFFNCSSLV  242 (536)
Q Consensus       169 L~~L~l~~n~~-~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~--~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~  242 (536)
                      |+.+..+++.. ++....++ .+..+|+.+.+..++.-+. ...  .-....|+.+++.++...... -...-.+++.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            88888877643 22222222 3567888888888763211 111  114567788877776542111 112235778888


Q ss_pred             EEEccCCcCC-Ccc----chhhhCCCCccEEEccccccc-ccccccccCCCCCCEEecCCCc
Q 045598          243 TLDLSYNRLN-GSI----SDWVDGLSQLSHLILGHNNLE-GEVPIQLCELNQLQLLDLSNNN  298 (536)
Q Consensus       243 ~L~L~~n~l~-~~~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~  298 (536)
                      .+.++.+... +..    ...-.++..++.+.+++++.. +.....+..+++|+.+++-+++
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            8888877542 221    112234677888888888765 3344556778888888887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.06  E-value=2.5e-05  Score=73.81  Aligned_cols=292  Identities=14%  Similarity=0.063  Sum_probs=168.8

Q ss_pred             EEecccccccc--CCCCcCCCCCcCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-CCcccCCc-cCCCCCCCCEEE
Q 045598            2 LSLVNDSLGGP--FRLPIHSHKRLGMLDISNNN-FRGHIPVEIADVLPSLYAFNNSMN-ALDGSIPS-SFGNMKFLQFLD   76 (536)
Q Consensus         2 L~L~~~~~~~~--~~~~~~~~~~L~~L~ls~~~-~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~L~~L~   76 (536)
                      |+|.++.-.+.  ......+++++++|.+.++. +++..-..+.+.+++|+++++..+ .++...-. --..+++|++|+
T Consensus       143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN  222 (483)
T KOG4341|consen  143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN  222 (483)
T ss_pred             ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence            34455543332  22234688999999998875 555556677888999999999984 45543322 345789999999


Q ss_pred             ccCCc-CccccchhHhhCCCCCCEEEcccCccCccCCccc----cCCCCCCEEEccCCcC-cccC-CcCCCCCCccCeee
Q 045598           77 LSNNH-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN----FNLTNLKWLQLEGSRF-VGEI-PQSLSKCSSLEGLY  149 (536)
Q Consensus        77 L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~i-~~~~-~~~~~~l~~L~~L~  149 (536)
                      ++.+. +++.--..++.++..++.+.+.+|.-.  ..+.+    ..+..+..+++..+.. ++.. ...-..+..|+.++
T Consensus       223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~  300 (483)
T KOG4341|consen  223 LSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC  300 (483)
T ss_pred             hccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence            99984 544333455577778888777765321  11222    1334455566555532 2111 11123466778887


Q ss_pred             cccCcC-CCCCCcc-cCCCCCCCeEEccCCc-cccCCcccc-cCCCCCCEEEccCCcCcccC---CCCCCCCCccEEEcc
Q 045598          150 LNNNSL-SGKIPRW-LGNLTRLQCIIMPNNH-LEGPIPVEF-CQLDLLQILDISDNNISGSL---PSCFHPLSIKQVHLS  222 (536)
Q Consensus       150 l~~n~~-~~~~~~~-~~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~---~~~~~~~~L~~L~l~  222 (536)
                      .+++.- .+..-.. -.+.++|+.+-+..++ ++..-...+ .+.+.|+.+++.++......   .-....+.|+.+.++
T Consensus       301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             ccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence            776543 2111111 2345778888887775 222111111 35567888877776543222   112256677888777


Q ss_pred             CCCCCCccc----ccccCCCCCccEEEccCCcCC-CccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEEecC
Q 045598          223 KNMLHGQLK----RGTFFNCSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLLDLS  295 (536)
Q Consensus       223 ~n~~~~~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~  295 (536)
                      .+.......    ...-.++..|+.+.+++++.. +..-..+..+++|+.+++-+++-...  +...-..+|++++.-+.
T Consensus       381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            665322211    111235678899999998764 33345566788999999988864322  22223456776666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.00066  Score=60.60  Aligned_cols=105  Identities=23%  Similarity=0.192  Sum_probs=65.0

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC--cCccccchhHhhCCCCCCEEEcccCccCc-cCCccccCCCCC
Q 045598           45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN--HLTGEIPEHLAVGCVNLRFLALSNNNLQG-HMFSRNFNLTNL  121 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  121 (536)
                      +..|+.+++.+..++.  -..|-.+++|+.|.++.|  .+.+.++.-. ..+++|++|++++|++.. .....+..+++|
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcch
Confidence            3456666666555543  233566778888888888  5554444433 456888888888888763 122344567778


Q ss_pred             CEEEccCCcCcccCC---cCCCCCCccCeeeccc
Q 045598          122 KWLQLEGSRFVGEIP---QSLSKCSSLEGLYLNN  152 (536)
Q Consensus       122 ~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~  152 (536)
                      ..|++.+|..+....   ..|.-+++|++|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            888888876553211   2456677777776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0014  Score=58.64  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCc--cCCCCCcccccCCCCCCEEeCCCCccccc-CchhhhCCCCCCEE
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN--NLTGSIPSTFSNLKYVESLDLSNNKLNGK-IPHQLVELKTLEVF  416 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  416 (536)
                      .|+.|.+.+..++.  -..|..+++|++|.++.|  ++.+-++-....+|+|+++++++|+|..+ --..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            44444455544441  123445666666666666  44444444445556666666666666521 01123345556666


Q ss_pred             EccCCcCcc
Q 045598          417 SVAYNNLSG  425 (536)
Q Consensus       417 ~l~~N~l~~  425 (536)
                      ++.+|.-+.
T Consensus       122 dl~n~~~~~  130 (260)
T KOG2739|consen  122 DLFNCSVTN  130 (260)
T ss_pred             hcccCCccc
Confidence            666665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.00019  Score=64.27  Aligned_cols=98  Identities=26%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEE
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQ  125 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  125 (536)
                      +.+.|++-++.++++  ....+|+.|++|.|+-|+|+ .+..  +..|++|++|+|..|.|.... ..-+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            344444444444432  12344555555555555554 2221  234555555555555544321 12234555666666


Q ss_pred             ccCCcCcccCC-----cCCCCCCccCeee
Q 045598          126 LEGSRFVGEIP-----QSLSKCSSLEGLY  149 (536)
Q Consensus       126 L~~n~i~~~~~-----~~~~~l~~L~~L~  149 (536)
                      |..|.-.+..+     ..+..+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            65554332222     1234455555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.00062  Score=70.13  Aligned_cols=174  Identities=22%  Similarity=0.140  Sum_probs=99.0

Q ss_pred             CCCCcCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-CCccc----CCccCCCCCCCCEEEccCCc-CccccchhHh
Q 045598           19 SHKRLGMLDISNNN-FRGHIPVEIADVLPSLYAFNNSMN-ALDGS----IPSSFGNMKFLQFLDLSNNH-LTGEIPEHLA   91 (536)
Q Consensus        19 ~~~~L~~L~ls~~~-~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~   91 (536)
                      .++.|+.|.+.++. +...--..+...++.|+.|+++++ .....    .......+++|+.|+++++. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            46888888888764 332112345555789999999873 11111    12244567899999999887 6644444444


Q ss_pred             hCCCCCCEEEcccCc-cCccCCcc-ccCCCCCCEEEccCCcCccc--CCcCCCCCCccCeeecccCcCCCCCCcccCCCC
Q 045598           92 VGCVNLRFLALSNNN-LQGHMFSR-NFNLTNLKWLQLEGSRFVGE--IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT  167 (536)
Q Consensus        92 ~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  167 (536)
                      ..+++|++|.+.++. ++...... ...+++|++|+++.+.....  ......++++++.+.+....-          ++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence            558899999987776 55433332 34678899999998764311  111233455666554432211          23


Q ss_pred             CCCeEEccCCcc---ccCCcccccCCCCCCEEEccCCc
Q 045598          168 RLQCIIMPNNHL---EGPIPVEFCQLDLLQILDISDNN  202 (536)
Q Consensus       168 ~L~~L~l~~n~~---~~~~~~~~~~l~~L~~L~l~~n~  202 (536)
                      .++.+.+.....   ..........+++++.+.+..+.
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            333333332221   11222334566667776666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.00024  Score=63.69  Aligned_cols=83  Identities=17%  Similarity=0.130  Sum_probs=40.5

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC-chhhhCCCCCCEEE
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI-PHQLVELKTLEVFS  417 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  417 (536)
                      .+.+.|++.+|.+.++  .....++.|+.|.|+-|.|+..  ..+..|+.|++|+|+.|.|.++. -..+.++++|+.|-
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555555421  2233455555555555555533  23455555555555555554321 12334555555555


Q ss_pred             ccCCcCcc
Q 045598          418 VAYNNLSG  425 (536)
Q Consensus       418 l~~N~l~~  425 (536)
                      +..|+-.+
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            55555443

>TIGR00864 PCC polycystin cation channel protein

Probab=95.93  E-value=0.0035  Score=73.39  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=36.8

Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------------CCCCCCCCCcccCCCCcCcc
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------------ICRSPATMSEASIGNERDDN  474 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-------------------~C~~~~~~~~~~~~~~~~~~  474 (536)
                      |++|+|+...+..+..+.+++.++|.+|||.|+|.+.                   .|..|..++++++..+..++
T Consensus         2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d   77 (2740)
T TIGR00864         2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD   77 (2740)
T ss_pred             CCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence            4445555444444444555555556666777777653                   49999999999888776544

Note: this model has been restricted to the amino half because for technical reasons.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.67  E-value=0.0018  Score=66.72  Aligned_cols=244  Identities=20%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             cCChhHhhcCCCCcEEEccCCCCccc--CCccCCCCCCCCEEEccCC-cCccccc---hhHhhCCCCCCEEEcccCc-cC
Q 045598           36 HIPVEIADVLPSLYAFNNSMNALDGS--IPSSFGNMKFLQFLDLSNN-HLTGEIP---EHLAVGCVNLRFLALSNNN-LQ  108 (536)
Q Consensus        36 ~~p~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n~-l~  108 (536)
                      .+...+...++.|+.+.+.++.-...  .-.....+++|+.|+++++ ......+   ......+.+|+.|+++.+. ++
T Consensus       178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            33344455478899998887643222  2345677899999999873 2111222   2344677899999999988 55


Q ss_pred             ccCCcccc-CCCCCCEEEccCCc-CcccC-CcCCCCCCccCeeecccCcCC-CC-CCcccCCCCCCCeEEccCCccccCC
Q 045598          109 GHMFSRNF-NLTNLKWLQLEGSR-FVGEI-PQSLSKCSSLEGLYLNNNSLS-GK-IPRWLGNLTRLQCIIMPNNHLEGPI  183 (536)
Q Consensus       109 ~~~~~~~~-~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~~~-~~-~~~~~~~l~~L~~L~l~~n~~~~~~  183 (536)
                      ......+. .+++|++|.+.++. +++.. ......+++|++|+++++... +. ......++++++.+.+.....    
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----  333 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----  333 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----
Confidence            54444443 37899999987776 44221 123466788999999987653 11 122234466666655433221    


Q ss_pred             cccccCCCCCCEEEccCCcCcc--cC--CCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598          184 PVEFCQLDLLQILDISDNNISG--SL--PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV  259 (536)
Q Consensus       184 ~~~~~~l~~L~~L~l~~n~~~~--~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  259 (536)
                            +..++.+.+.......  ..  ...-.++.++.+.+..+..........+.++++|. ..+..         ..
T Consensus       334 ------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~  397 (482)
T KOG1947|consen  334 ------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RL  397 (482)
T ss_pred             ------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------Hh
Confidence                  2333343333221110  00  01114556666666665532211122345555552 21111         11


Q ss_pred             hCCCCccEEEccccccccc-ccccccC-CCCCCEEecCCCcC
Q 045598          260 DGLSQLSHLILGHNNLEGE-VPIQLCE-LNQLQLLDLSNNNL  299 (536)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~~  299 (536)
                      .....++.|+++.+..... ....... +.+++.+++.++..
T Consensus       398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             ccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            1122278888888765421 1111222 56777787777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.83  E-value=0.012  Score=31.11  Aligned_cols=10  Identities=70%  Similarity=0.773  Sum_probs=3.7

Q ss_pred             EEeCCCccCC
Q 045598          367 TLNLSHNNLT  376 (536)
Q Consensus       367 ~L~L~~n~l~  376 (536)
                      +|+|++|+++
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.80  E-value=0.012  Score=31.09  Aligned_cols=20  Identities=45%  Similarity=0.654  Sum_probs=11.1

Q ss_pred             CCCEEeCCCCcccccCchhhh
Q 045598          388 YVESLDLSNNKLNGKIPHQLV  408 (536)
Q Consensus       388 ~L~~L~L~~n~l~~~~~~~~~  408 (536)
                      +|++|||++|+++ .+|..|.
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566666666666 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.0037  Score=53.64  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCccccc-CCCCCCEEeCCCC-cccccCchhhhCCCCCCEE
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFS-NLKYVESLDLSNN-KLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  416 (536)
                      .++.+|-++..++.+.-+.+..+++++.|.+.+|.-- +.--+.+. ..++|+.|++++| +||+..-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4788888998888877778888889999988888532 22112222 2478999999988 6776666677777888877


Q ss_pred             EccC
Q 045598          417 SVAY  420 (536)
Q Consensus       417 ~l~~  420 (536)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.39  E-value=0.057  Score=26.39  Aligned_cols=13  Identities=69%  Similarity=0.764  Sum_probs=4.8

Q ss_pred             CCCEEEccCCcCc
Q 045598           71 FLQFLDLSNNHLT   83 (536)
Q Consensus        71 ~L~~L~L~~n~l~   83 (536)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.33  E-value=0.14  Score=28.23  Aligned_cols=22  Identities=41%  Similarity=0.532  Sum_probs=15.2

Q ss_pred             CCCCCEEEccCCcCccccchhHh
Q 045598           69 MKFLQFLDLSNNHLTGEIPEHLA   91 (536)
Q Consensus        69 l~~L~~L~L~~n~l~~~~~~~~~   91 (536)
                      +++|++|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 7776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.33  E-value=0.14  Score=28.23  Aligned_cols=22  Identities=41%  Similarity=0.532  Sum_probs=15.2

Q ss_pred             CCCCCEEEccCCcCccccchhHh
Q 045598           69 MKFLQFLDLSNNHLTGEIPEHLA   91 (536)
Q Consensus        69 l~~L~~L~L~~n~l~~~~~~~~~   91 (536)
                      +++|++|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 7776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.71  E-value=0.16  Score=27.93  Aligned_cols=15  Identities=47%  Similarity=0.660  Sum_probs=7.9

Q ss_pred             CCCCEEeCCCCcccc
Q 045598          387 KYVESLDLSNNKLNG  401 (536)
Q Consensus       387 ~~L~~L~L~~n~l~~  401 (536)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.71  E-value=0.16  Score=27.93  Aligned_cols=15  Identities=47%  Similarity=0.660  Sum_probs=7.9

Q ss_pred             CCCCEEeCCCCcccc
Q 045598          387 KYVESLDLSNNKLNG  401 (536)
Q Consensus       387 ~~L~~L~L~~n~l~~  401 (536)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.12  E-value=0.0021  Score=64.81  Aligned_cols=182  Identities=25%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             cCEEEccCCcCcccCChhHhhc---CCCCcEEEccCCCCcccCC----ccCCCC-CCCCEEEccCCcCcccc----chhH
Q 045598           23 LGMLDISNNNFRGHIPVEIADV---LPSLYAFNNSMNALDGSIP----SSFGNM-KFLQFLDLSNNHLTGEI----PEHL   90 (536)
Q Consensus        23 L~~L~ls~~~~~~~~p~~~~~~---l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~   90 (536)
                      +..|.|.+|.+.......+...   .+.|..|++++|.+.+...    ..+... ..+++|++..|.+++..    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6777777777765544444433   3567777888877764211    223332 55666777777766332    2333


Q ss_pred             hhCCCCCCEEEcccCccCcc----CCcc----ccCCCCCCEEEccCCcCcccC----CcCCCCCCc-cCeeecccCcCCC
Q 045598           91 AVGCVNLRFLALSNNNLQGH----MFSR----NFNLTNLKWLQLEGSRFVGEI----PQSLSKCSS-LEGLYLNNNSLSG  157 (536)
Q Consensus        91 ~~~l~~L~~L~L~~n~l~~~----~~~~----~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~l~~n~~~~  157 (536)
                       .....++.++++.|.+...    ...+    +....++++|++.++.++...    ..++...++ +..+++..|.+.+
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence             2366777778877766421    1122    234677888888888765321    123444455 6678888887764


Q ss_pred             CC----CcccCCC-CCCCeEEccCCccccCCc----ccccCCCCCCEEEccCCcCcc
Q 045598          158 KI----PRWLGNL-TRLQCIIMPNNHLEGPIP----VEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       158 ~~----~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      ..    ...+..+ ..++++++..|.+.....    ..+..++.++.+.+++|.+..
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            31    1234444 677889999998875433    334566788999999888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.84  E-value=0.0062  Score=53.43  Aligned_cols=83  Identities=19%  Similarity=0.224  Sum_probs=46.7

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV  418 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  418 (536)
                      ...+.||++.|.+.. ...-|+-++.|..|+++.|.+. ..|..+.....+..+++.+|..+ ..|..+...+.++.+++
T Consensus        42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            345556666655432 2223444555566666666665 45555665556666666666555 55555666666666666


Q ss_pred             cCCcCc
Q 045598          419 AYNNLS  424 (536)
Q Consensus       419 ~~N~l~  424 (536)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.47  E-value=0.0039  Score=62.90  Aligned_cols=86  Identities=28%  Similarity=0.324  Sum_probs=40.3

Q ss_pred             cccceEEccCCcCcCC----CcccccCCCC-CCEEeCCCccCCCC----CcccccCC-CCCCEEeCCCCcccccCch---
Q 045598          339 SLLSGLDLSCNKLIGP----IPLQIGNLTR-IQTLNLSHNNLTGS----IPSTFSNL-KYVESLDLSNNKLNGKIPH---  405 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~---  405 (536)
                      .++++|++++|.++..    ...++...++ +.+|++..|.+.+.    ....+..+ ..++.++++.|.++.....   
T Consensus       204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~  283 (478)
T KOG4308|consen  204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA  283 (478)
T ss_pred             ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence            3455555555554421    1122333333 45556665555532    12223333 4556666666665543322   


Q ss_pred             -hhhCCCCCCEEEccCCcCc
Q 045598          406 -QLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       406 -~~~~l~~L~~L~l~~N~l~  424 (536)
                       .+...+.++.+.+.+|++.
T Consensus       284 ~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  284 EVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhhhHHHHHhhcccCccc
Confidence             2334455666666666555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.28  E-value=0.036  Score=47.83  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=14.3

Q ss_pred             CcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598           48 LYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus        48 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      ++.+|-++..|.....+.+.+++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            344444444444333334444444444444444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.12  E-value=0.1  Score=28.11  Aligned_cols=15  Identities=47%  Similarity=0.718  Sum_probs=6.8

Q ss_pred             CCCCEEeCCCCcccc
Q 045598          387 KYVESLDLSNNKLNG  401 (536)
Q Consensus       387 ~~L~~L~L~~n~l~~  401 (536)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.41  E-value=0.018  Score=50.62  Aligned_cols=60  Identities=13%  Similarity=0.036  Sum_probs=27.7

Q ss_pred             CCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcC
Q 045598           94 CVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL  155 (536)
Q Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  155 (536)
                      ++.+..|+++.|.+. ..+..+.....++.+++..|..+ ..|..+...++++.+++.++.+
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence            334444444444443 22333333444444444444433 4455555555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-29
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-29
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 133/519 (25%), Positives = 199/519 (38%), Gaps = 122/519 (23%)
Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG------------- 67
           K L  L ++ N F G IP  ++    +L   + S N   G++P  FG             
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 68  ------------NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN 115
                        M+ L+ LDLS N  +GE+PE L     +L  L LS+NN  G +    
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-- 383
Query: 116 FNLTN-----LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 170
            NL       L+ L L+ + F G+IP +LS CS L  L+L+ N LSG IP  LG+L++L+
Sbjct: 384 -NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 171 CIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230
            + +  N LEG IP E              N+++G +PS                     
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS------------------ 484
Query: 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXX 290
                 NC++L  + LS NRL G I  W+  L  L+ L L +N+  G +P          
Sbjct: 485 ------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 291 XXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCN- 349
                    +G IP+        +  +I   F    K   YI          G+   C+ 
Sbjct: 539 WLDLNTNLFNGTIPAAM----FKQSGKIAANF-IAGKRYVYIKN-------DGMKKECHG 586
Query: 350 -----KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP 404
                +  G    Q+  L+     N++     G    TF N   +  LD+S N L+G IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 405 HQLVELKTLEVFSVAYNNLSGEIPEWT--------------------------------- 431
            ++  +  L + ++ +N++SG IP+                                   
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 432 --------------AQFATFNESSYEGNTFLCGLPLPIC 456
                          QF TF  + +  N  LCG PLP C
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 204/527 (38%), Gaps = 120/527 (22%)
Query: 11  GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG--- 67
           GP  +P    K L  L ++ N F G IP  ++    +L   + S N   G++P  FG   
Sbjct: 261 GP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 68  ----------------------NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNN 105
                                  M+ L+ LDLS N  +GE+PE L     +L  L LS+N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 106 NLQGHMF---SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 162
           N  G +     +N   T L+ L L+ + F G+IP +LS CS L  L+L+ N LSG IP  
Sbjct: 379 NFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLS 222
           LG+L++L+ + +  N LEG IP E              N+++G +PS             
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---------- 487
Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIX 282
                         NC++L  + LS NRL G I  W+  L  L+ L L +N+  G +P  
Sbjct: 488 --------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 283 XXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342
                            +G IP+        +  +I   F    K   YI          
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGKIAANF-IAGKRYVYIKN-------D 581
Query: 343 GLDLSCN------KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
           G+   C+      +  G    Q+  L+     N++     G    TF N   +  LD+S 
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT------------------------- 431
           N L+G IP ++  +  L + ++ +N++SG IP+                           
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 432 ----------------------AQFATFNESSYEGNTFLCGLPLPIC 456
                                  QF TF  + +  N  LCG PLP C
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 178/437 (40%), Gaps = 64/437 (14%)
Query: 77  LSNNH-----------------------LTGEIPEHLAVG-CVNLRFLALSNNNLQ---- 108
           LSN+H                       L+G +    ++G C  L+FL +S+N L     
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 109 --GHMFSRNFNLTN----------------------LKWLQLEGSRFVGEIPQSLSKCSS 144
             G +   +  + +                      LK L + G++  G++   +S+C +
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVN 201
Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNIS 204
           LE L +++N+ S  IP +LG+ + LQ + +  N L G                 S N   
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 205 GSLPSCFHPLSIKQVH---LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
           G +P    PL +K +    L++N   G++       C +L  LDLS N   G++  +   
Sbjct: 261 GPIP----PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 262 LSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXX-XXXHGPIPSCFDNTTLHEKKQIRE 320
            S L  L L  NN  GE+P+                    G +P    N +         
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
              F+   +  + Q    + L  L L  N   G IP  + N + + +L+LS N L+G+IP
Sbjct: 377 SNNFSGPILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
           S+  +L  +  L L  N L G+IP +L+ +KTLE   + +N+L+GEIP   +     N  
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 441 SYEGNTFLCGLPLPICR 457
           S   N     +P  I R
Sbjct: 496 SLSNNRLTGEIPKWIGR 512

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 129/316 (40%), Gaps = 64/316 (20%)
Query: 150 LNNNSLSG-------KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCXXXXXXXXXXSDN 201
           +NN  LSG        IP  L NL  L  + +   N+L GPIP              +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
           N+SG++P                    Q+K        +LVTLD SYN L+G++   +  
Sbjct: 112 NVSGAIPDFLS----------------QIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 262 LSQLSHLILGHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGPIPSCFDNTTLHEKKQI-RE 320
           L  L  +    N + G +P                   +G     F + T+   +   + 
Sbjct: 148 LPNLVGITFDGNRISGAIP-----------------DSYGSFSKLFTSMTISRNRLTGKI 190
Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
              F   N+A++            DLS N L G   +  G+    Q ++L+ N+L   + 
Sbjct: 191 PPTFANLNLAFV------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237
Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
                 K +  LDL NN++ G +P  L +LK L   +V++NNL GEIP+       F+ S
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 441 SYEGNTFLCGLPLPIC 456
           +Y  N  LCG PLP C
Sbjct: 297 AYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 364 RIQTLNLSHNNLTGS--IPSTFSNLKYVESLDLSN-NKLNGKIPHQLVELKTLEVFSVAY 420
           R+  L+LS  NL     IPS+ +NL Y+  L +   N L G IP  + +L  L    + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 421 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDMNS 480
            N+SG IP++ +Q  T     +  N     LP  I   P  +     GN     + D   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 481 FFITFTTSYVI 491
            F    TS  I
Sbjct: 171 SFSKLFTSMTI 181

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 155/403 (38%), Gaps = 85/403 (21%)
Query: 68  NMKFLQFLDLSNNHLTG-EIPEHLAVGCVNLRFLALSNNNL------------QGHMFSR 114
           N++ L+ L L +NH++   +PE+      NL+ L   NN +            Q    S 
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQ--NLKVLDFQNNAIHYISRKDTNSLEQATNLSL 183
Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLY----LNNNSLSGKIPRWLGNLTRLQ 170
           NFN  ++K +  E   F+ +I QSL    SL        L N++L      WLG      
Sbjct: 184 NFNGNDIKGI--EPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQS---LWLGTFEDTD 238
Query: 171 CIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230
              + +   EG      C                         +S++ ++L K+     L
Sbjct: 239 DQYLTSATFEG-----LC------------------------DMSVESINLQKHRF-SDL 268
Query: 231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIXXXXXXXXX 290
              TF   + +  LDL+   LNG +   ++G++ L  L+L  N+ +    I         
Sbjct: 269 SSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINA------- 320
Query: 291 XXXXXXXXXHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
                        PS  D   L+ K  +R K +  T+ +      + L  L  LDLS + 
Sbjct: 321 ----------ASFPSLRD---LYIKGNMR-KLDLGTRCL------EKLENLQKLDLSHSD 360
Query: 351 LIGP--IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408
           +       LQ+ NL  +Q LNLS+N   G     F     +E LD++   L+ K PH   
Sbjct: 361 IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 409 E-LKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 450
           + L  L V ++++  L        A        + +GN+F  G
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	536
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-118
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-68
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-49
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  366 bits (941), Expect = e-118
 Identities = 131/437 (29%), Positives = 191/437 (43%), Gaps = 61/437 (13%)

Query: 23  LGMLDISNNNFRGHIPVEIADV-LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81
           L  LD+S+NNF G I   +      +L       N   G IP +  N   L  L LS N+
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 82  LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSK 141
           L+G IP  L      LR L L  N L+G +      +  L+ L L+ +   GEIP  LS 
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           C++L  + L+NN L+G+IP+W+G L  L  + + NN   G IP E      L  LD++ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG 261
             +G++P+                          F  S      ++ N + G    ++  
Sbjct: 549 LFNGTIPAAM------------------------FKQS----GKIAANFIAGKRYVYIKN 580

Query: 262 LSQLSHLILGHN--NLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
                      N    +G    QL  L+     ++++    G     FDN          
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN---------- 630

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                                +  LD+S N L G IP +IG++  +  LNL HN+++GSI
Sbjct: 631 ------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNE 439
           P    +L+ +  LDLS+NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF  
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPP 731

Query: 440 SSYEGNTFLCGLPLPIC 456
           + +  N  LCG PLP C
Sbjct: 732 AKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  314 bits (806), Expect = 2e-98
 Identities = 123/430 (28%), Positives = 191/430 (44%), Gaps = 41/430 (9%)

Query: 9   LGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS--SF 66
                   + S   L  L +SN++  G +         SL + + S N+L G + +  S 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSLDLSRNSLSGPVTTLTSL 122

Query: 67  GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM---FSRNFNLTNLKW 123
           G+   L+FL++S+N L         +   +L  L LS N++ G     +  +     LK 
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182

Query: 124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183
           L + G++  G++   +S+C +LE L +++N+ S  IP +LG+ + LQ + +  N L G  
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239

Query: 184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243
                    L++L+IS N   G +P      S++ + L++N   G++       C +L  
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGP 302
           LDLS N   G++  +    S L  L L  NN  GE+P+  L ++  L++LDLS N   G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN- 361
           +P    N +                             L  LDLS N   GPI   +   
Sbjct: 359 LPESLTNLSAS---------------------------LLTLDLSSNNFSGPILPNLCQN 391

Query: 362 -LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
               +Q L L +N  TG IP T SN   + SL LS N L+G IP  L  L  L    +  
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 421 NNLSGEIPEW 430
           N L GEIP+ 
Sbjct: 452 NMLEGEIPQE 461

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  306 bits (787), Expect = 8e-96
 Identities = 131/439 (29%), Positives = 197/439 (44%), Gaps = 45/439 (10%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIP--VEIADVLPSLYAFNNSMNAL 58
           +L L N  + G           L  LD+S N+  G +     +      L   N S N L
Sbjct: 81  SLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTL 138

Query: 59  DGSIP-SSFGNMKFLQFLDLSNNHLTGEIPEHLAV--GCVNLRFLALSNNNLQGHM-FSR 114
           D     S    +  L+ LDLS N ++G       +  GC  L+ LA+S N + G +  S 
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS- 197

Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIM 174
                NL++L +  + F   IP  L  CS+L+ L ++ N LSG   R +   T L+ + +
Sbjct: 198 --RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254

Query: 175 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL--SIKQVHLSKNMLHGQLKR 232
            +N   GPIP    +   LQ L +++N  +G +P        ++  + LS N  +G +  
Sbjct: 255 SSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

Query: 233 GTFFNCSSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGHNNLEGEVPIQLCEL-NQLQ 290
             F +CS L +L LS N  +G +  D +  +  L  L L  N   GE+P  L  L   L 
Sbjct: 313 F-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 291 LLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
            LDLS+NN  GPI                                   + L  L L  N 
Sbjct: 372 TLDLSSNNFSGPILPNLCQNP--------------------------KNTLQELYLQNNG 405

Query: 351 LIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410
             G IP  + N + + +L+LS N L+G+IPS+  +L  +  L L  N L G+IP +L+ +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 411 KTLEVFSVAYNNLSGEIPE 429
           KTLE   + +N+L+GEIP 
Sbjct: 466 KTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  270 bits (693), Expect = 4e-82
 Identities = 103/390 (26%), Positives = 169/390 (43%), Gaps = 46/390 (11%)

Query: 52  NNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM 111
           +  +N    ++ SS  ++  L+ L LSN+H+ G +         +L  L LS N+L G +
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSLDLSRNSLSGPV 116

Query: 112 FSRN--FNLTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWL---GN 165
            +     + + LK+L +  +        S   K +SLE L L+ NS+SG           
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176

Query: 166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 225
              L+ + +  N + G +     +   L+ LD+S NN S  +P      +++ + +S N 
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234

Query: 226 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC- 284
           L G   R     C+ L  L++S N+  G I      L  L +L L  N   GE+P  L  
Sbjct: 235 LSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSG 291

Query: 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGL 344
             + L  LDLS N+ +G +P  F +                             SLL  L
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGS----------------------------CSLLESL 323

Query: 345 DLSCNKLIGPIPLQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKY-VESLDLSNNKLNGK 402
            LS N   G +P+  +  +  ++ L+LS N  +G +P + +NL   + +LDLS+N  +G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 403 IPHQL--VELKTLEVFSVAYNNLSGEIPEW 430
           I   L      TL+   +  N  +G+IP  
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  232 bits (595), Expect = 4e-68
 Identities = 96/343 (27%), Positives = 161/343 (46%), Gaps = 47/343 (13%)

Query: 100 LALSNNNLQGHMFSRN---FNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
           + LS+  L     + +    +LT L+ L L  S   G +       +SL  L L+ NSLS
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLS 113

Query: 157 GKIP--RWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHP 213
           G +     LG+ + L+ + + +N L+ P  V    +L+ L++LD+S N+ISG+    +  
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 214 L----SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLI 269
                 +K + +S N + G +       C +L  LD+S N  +  I  ++   S L HL 
Sbjct: 174 SDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229

Query: 270 LGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNI 329
           +  N L G+    +    +L+LL++S+N   GPIP                         
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---------------------- 267

Query: 330 AYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKY 388
                   L  L  L L+ NK  G IP  + G    +  L+LS N+  G++P  F +   
Sbjct: 268 --------LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 389 VESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIPEW 430
           +ESL LS+N  +G++P   L++++ L+V  +++N  SGE+PE 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  199 bits (509), Expect = 5e-56
 Identities = 79/298 (26%), Positives = 125/298 (41%), Gaps = 44/298 (14%)

Query: 143 SSLEGLYLNNNSLS---GKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDIS 199
             +  + L++  L+     +   L +LT L+ + + N+H+ G +   F     L  LD+S
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 200 DNNISGSLPSCFHPLSIKQ---VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
            N++SG + +     S      +++S N L    K       +SL  LDLS N ++G+  
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 257 DWVD---GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
                  G  +L HL +  N + G+V +       L+ LD+S+NN    IP   D     
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGD----- 221

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
                                    S L  LD+S NKL G     I   T ++ LN+S N
Sbjct: 222 ------------------------CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 374 NLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV-ELKTLEVFSVAYNNLSGEIPEW 430
              G IP     LK ++ L L+ NK  G+IP  L     TL    ++ N+  G +P +
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  232 bits (594), Expect = 2e-72
 Identities = 93/358 (25%), Positives = 138/358 (38%), Gaps = 81/358 (22%)

Query: 102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE--IPQSLSKCSSLEGLYL-NNNSLSGK 158
             N    G +   +     +  L L G        IP SL+    L  LY+   N+L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 159 IPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ 218
           IP  +  LT+L  + + + ++ G IP    Q+  L  LD S N +SG+LP          
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--------- 143

Query: 219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 278
                          +  +  +LV +    NR++G+I D     S+L             
Sbjct: 144 ---------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------- 175

Query: 279 VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL 338
                        + +S N L G IP  F N  L                          
Sbjct: 176 ----------FTSMTISRNRLTGKIPPTFANLNLAF------------------------ 201

Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
                +DLS N L G   +  G+    Q ++L+ N+L   +       K +  LDL NN+
Sbjct: 202 -----VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255

Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 456
           + G +P  L +LK L   +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  208 bits (533), Expect = 2e-63
 Identities = 79/292 (27%), Positives = 119/292 (40%), Gaps = 52/292 (17%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
                 R+  LD+S  N     P                       IPSS  N+ +L FL
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFL 81

Query: 76  DLSN-NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE 134
            +   N+L G IP  +A     L +L +++ N+                         G 
Sbjct: 82  YIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVS------------------------GA 116

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQL-DLL 193
           IP  LS+  +L  L  + N+LSG +P  + +L  L  I    N + G IP  +     L 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
             + IS N ++G +P  F  L++  V LS+NML G      F +  +   + L+ N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAF 235

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS 305
            +   V     L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  185 bits (472), Expect = 1e-54
 Identities = 79/312 (25%), Positives = 119/312 (38%), Gaps = 59/312 (18%)

Query: 1   TLSLVNDSLGGPFRLP--IHSHKRLGMLDISN-NNFRGHIPVEIADVLPSLYAFNNSMNA 57
            L L   +L  P+ +P  + +   L  L I   NN  G IP  IA  L  L+    +   
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTN 112

Query: 58  LDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFN 117
           + G+IP     +K L  LD S N L+G +P  ++    NL  +    N + G        
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGA------- 164

Query: 118 LTNLKWLQLEGSRFVGEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
                            IP S    S L   + ++ N L+GKIP    NL  L  + +  
Sbjct: 165 -----------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N LEG   V F      Q + ++ N+++  L                             
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------------------VG 241

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
              +L  LDL  NR+ G++   +  L  L  L +  NNL GE+P Q   L +  +   +N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

Query: 297 NNLH--GPIPSC 306
           N      P+P+C
Sbjct: 301 NKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  133 bits (337), Expect = 3e-35
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI--QLCELNQLQLLDLSN-NNL 299
           T D       G + D      ++++L L   NL    PI   L  L  L  L +   NNL
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI 359
            GPIP                                 L+ L  L ++   + G IP  +
Sbjct: 90  VGPIPPAIAK----------------------------LTQLHYLYITHTNVSGAIPDFL 121

Query: 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF-SV 418
             +  + TL+ S+N L+G++P + S+L  +  +    N+++G IP        L    ++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 419 AYNNLSGEIPE 429
           + N L+G+IP 
Sbjct: 182 SRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (289), Expect = 1e-28
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 37/180 (20%)

Query: 253 GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG--PIPSCFDNT 310
            ++S W+            +    G +     +  ++  LDLS  NL    PIPS   N 
Sbjct: 22  TTLSSWLPTTD------CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN- 74

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLS-CNKLIGPIPLQIGNLTRIQTLN 369
                                      L  L+ L +   N L+GPIP  I  LT++  L 
Sbjct: 75  ---------------------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 370 LSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
           ++H N++G+IP   S +K + +LD S N L+G +P  +  L  L   +   N +SG IP+
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 9e-67
 Identities = 88/443 (19%), Positives = 158/443 (35%), Gaps = 21/443 (4%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
            L+L ++ L          + +L  LD+  N      P      LP L   N   N L  
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQ 87

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
               +F     L  L L +N +             NL  L LS+N L          L N
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 121 LKWLQLEGSRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
           L+ L L  ++      + L     SSL+ L L++N +    P     + RL  + + N  
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 179 LEGPIPVEFCQLDL---LQILDISDNNISGSLPSCFHPL---SIKQVHLSKNMLHGQLKR 232
           L   +  + C       ++ L +S++ +S +  + F  L   ++  + LS N L+  +  
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGN 265

Query: 233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN---------NLEGEVPIQL 283
            +F     L    L YN +    S  + GL  + +L L  +         +L        
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 284 CELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSG 343
             L  L+ L++ +N++ G   + F      +   +   F          +     S L  
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGK 402
           L+L+ NK+          L  ++ L+L  N +   +    +  L+ +  + LS NK    
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 403 IPHQLVELKTLEVFSVAYNNLSG 425
             +    + +L+   +    L  
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (568), Expect = 6e-65
 Identities = 93/481 (19%), Positives = 159/481 (33%), Gaps = 58/481 (12%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEI--ADVLPSLYAFNNSMNAL 58
            L L ++ +        H+  RL  L ++N      +  ++       S+   + S + L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 59  DGSIPSSFGNMKF--LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFS 113
             +  ++F  +K+  L  LDLS N+L     +  A     L +  L  NN+Q    H   
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLH 293

Query: 114 RNFNLT------NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 167
             FN+       +     +  +        S      LE L + +N + G        L 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 168 RLQCIIMPNNHLE--GPIPVEFCQLDL--LQILDISDNNISGSLPSCFHPL-SIKQVHLS 222
            L+ + + N+           F  L    L IL+++ N IS      F  L  ++ + L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVP 280
            N +  +L    +    ++  + LSYN+      +    +  L  L+L    L+     P
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 281 IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL 340
                L  L +LDLSNNN+        +                             L  
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEG----------------------------LEK 505

Query: 341 LSGLDLSCNKL--------IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESL 392
           L  LDL  N L         G     +  L+ +  LNL  N         F +L  ++ +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 393 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY-EGNTFLCGL 451
           DL  N LN           +L+  ++  N ++    +                N F C  
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 452 P 452
            
Sbjct: 626 E 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (510), Expect = 1e-56
 Identities = 79/425 (18%), Positives = 143/425 (33%), Gaps = 75/425 (17%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81
              + D S+      +P ++     ++   N + N L     ++F     L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 82  LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSK 141
           ++   PE        L+ L L +N L                             ++ + 
Sbjct: 61  ISKLEPELCQ-KLPMLKVLNLQHNELSQ------------------------LSDKTFAF 95

Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           C++L  L+L +NS+             L  + + +N L         QL+ LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 202 NISGSLPSCFHPL---SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
            I              S+K++ LS N +      G F     L  L L+  +L  S+++ 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 259 V---DGLSQLSHLILGHNNLEGEVP--IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
           +      + + +L L ++ L           +   L +LDLS NNL+      F      
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW---- 270

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
                                   L  L    L  N +       +  L  ++ LNL  +
Sbjct: 271 ------------------------LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

Query: 374 ---------NLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
                    +L      +F  LK +E L++ +N + G   +    L  L+  S++ +  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 425 GEIPE 429
                
Sbjct: 367 LRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 2e-56
 Identities = 88/430 (20%), Positives = 145/430 (33%), Gaps = 53/430 (12%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81
            L MLD+S NN         A  LP L  F    N +      S   +  +++L+L  + 
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 82  LTG--------EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG 133
                      +I +        L  L + +N++ G   +    L NLK+L L  S    
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 134 EIPQSLS----KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPV-EFC 188
               + +      S L  L L  N +S         L  L+ + +  N +   +   E+ 
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427

Query: 189 QLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDL 246
            L+ +  + +S N       + F  + S++++ L +  L         F    +L  LDL
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLE--------GEVPIQLCELNQLQLLDLSNNN 298
           S N +     D ++GL +L  L L HNNL         G     L  L+ L +L+L +N 
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
                   F +                            L  L  +DL  N L       
Sbjct: 548 FDEIPVEVFKD----------------------------LFELKIIDLGLNNLNTLPASV 579

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFS-NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS 417
             N   +++LNL  N +T      F    + +  LD+  N  +         +  +    
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH 639

Query: 418 VAYNNLSGEI 427
                LS   
Sbjct: 640 TNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (468), Expect = 6e-51
 Identities = 71/348 (20%), Positives = 122/348 (35%), Gaps = 17/348 (4%)

Query: 95  VNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS 154
           V+      S+  L       +   TN+  L L  ++       + ++ S L  L +  N+
Sbjct: 4   VSHEVADCSHLKLTQ--VPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 155 LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL 214
           +S   P     L  L+ + + +N L       F     L  L +  N+I     + F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 215 -SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD--GLSQLSHLILG 271
            ++  + LS N L    K GT     +L  L LS N++    S+ +D    S L  L L 
Sbjct: 121 KNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDNTTLHEKKQIREKFEFTTKNIA 330
            N ++   P     + +L  L L+N  L   +             + +       +    
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 331 YIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE 390
             + G   + L+ LDLS N L          L +++   L +NN+      +   L  V 
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 391 SLDLSNN---------KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
            L+L  +          L          LK LE  ++  N++ G    
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  179 bits (457), Expect = 2e-49
 Identities = 77/406 (18%), Positives = 140/406 (34%), Gaps = 58/406 (14%)

Query: 21  KRLGMLDISNNNFRGHIPVEIA--------DVLPSLYAFNNSMNALDGSIPSSFGNMKFL 72
            +L    +  NN +      +         ++  S    + S+ +L      SF  +K L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 73  QFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFS----RNFNLTNLKWLQLEG 128
           + L++ +N + G        G +NL++L+LSN+       +     +   + L  L L  
Sbjct: 332 EHLNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 129 SRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHLEGPIPVEF 187
           ++       + S    LE L L  N +  ++       L  +  I +  N         F
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 188 CQLDLLQILDISDNNISG--SLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 244
             +  LQ L +    +    S PS F PL ++  + LS N +   +          L  L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEIL 509

Query: 245 DLSYNRLN--------GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
           DL +N L         G    ++ GLS L  L L  N  +        +L +L+++DL  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           NNL+    S F+N                               L  L+L  N +     
Sbjct: 570 NNLNTLPASVFNN----------------------------QVSLKSLNLQKNLITSVEK 601

Query: 357 LQIG-NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401
              G     +  L++  N    +  S    + +   ++ ++  +  
Sbjct: 602 KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW---INETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  168 bits (428), Expect = 2e-45
 Identities = 74/393 (18%), Positives = 122/393 (31%), Gaps = 49/393 (12%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
                IS  +            L  L   N   N + G   + F  +  L++L LSN+  
Sbjct: 307 FTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 83  TGEIPEHLA---VGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIP-Q 137
           +     +     +    L  L L+ N +   + S  F  L +L+ L L  +    E+  Q
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG--PIPVEFCQLDLLQI 195
                 ++  +YL+ N            +  LQ +++    L+     P  F  L  L I
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 196 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-------GQLKRGTFFNCSSLVTLDLS 247
           LD+S+NNI+         L  ++ + L  N L                   S L  L+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 248 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307
            N  +    +    L +L  + LG NNL             L+ L+L  N +       F
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367
                                      G     L+ LD+  N            +  I  
Sbjct: 605 ---------------------------GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 368 LNLSHNNLTGSI----PSTFSNLKYVESLDLSN 396
            + +   L+       P  +     V   D S+
Sbjct: 638 THTNIPELSSHYLCNTPPHYHG-FPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 8e-33
 Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 33/244 (13%)

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
            ++ D S   ++  +P    P +I  ++L+ N L   L    F   S L +LD+ +N ++
Sbjct: 6   HEVADCSHLKLT-QVPDDL-PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTIS 62

Query: 253 GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312
               +    L  L  L L HN L             L  L L +N++     + F     
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK--- 119

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
                                       L  LDLS N L          L  +Q L LS+
Sbjct: 120 -------------------------QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 373 NNLTGSIPSTFSNLKYV--ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           N +                + L+LS+N++    P     +  L    +    L   + E 
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 431 TAQF 434
               
Sbjct: 215 LCLE 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 264 QLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFE 323
                   H  L  +VP  L     + +L+L++N L     + F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 324 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTF 383
                          S L+ LD+  N +    P     L  ++ LNL HN L+     TF
Sbjct: 48  --------------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 384 SNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           +    +  L L +N +     +  V+ K L    +++N LS      
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (533), Expect = 3e-60
 Identities = 62/428 (14%), Positives = 136/428 (31%), Gaps = 56/428 (13%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
               +           ++  + L  L             +P+    +  +Q ++++ N  
Sbjct: 227 WENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 83  TGEIPEHLAVG-------CVNLRFLALSNNNLQ-GHMFSRNFNLTNLKWLQLEGSRFVGE 134
                                ++ + +  NNL+   + +    +  L  L+   ++  G+
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG-PIPVEFCQLDLL 193
           +P +      L  L L  N ++     + G   +++ +   +N L+  P   +   + ++
Sbjct: 346 LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 194 QILDISDNNISGSLPSCFHPL--------SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 245
             +D S N I       F PL        ++  ++LS N +     +  F   S L +++
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSIN 463

Query: 246 LSYNRLNG-------SISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNN 297
           L  N L           ++       L+ + L  N L       +   L  L  +DLS N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 298 NLHGPIPSCFDN-TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           +     P+   N +TL                       K   + +  D   N+ +   P
Sbjct: 524 SFSK-FPTQPLNSSTL-----------------------KGFGIRNQRDAQGNRTLREWP 559

Query: 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
             I     +  L +  N++         N+     LD+ +N         +       ++
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKITPNISV---LDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 417 SVAYNNLS 424
            + Y+   
Sbjct: 617 MLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  204 bits (521), Expect = 1e-58
 Identities = 64/425 (15%), Positives = 137/425 (32%), Gaps = 63/425 (14%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
            +L    + N+ F      E  +        N+       +    + N+K L  +++ N 
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENE------NSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
               ++P  L      ++ + ++ N                     E  +   +      
Sbjct: 260 PNLTKLPTFLK-ALPEMQLINVACNRGIS----------------GEQLKDDWQALADAP 302

Query: 141 KCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDIS 199
               ++ +Y+  N+L +  +   L  + +L  +    N LEG +P  F     L  L+++
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361

Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG----- 253
            N I+    +       ++ +  + N L          + S +  +D SYN +       
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 254 --SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
              +         +S + L +N +           + L  ++L  N L   IP       
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDE 480

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNL 370
               K                       LL+ +DL  NKL       +   L  +  ++L
Sbjct: 481 NENFKN--------------------TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSN------NKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           S+N+ +   P+   N   ++   + N      N+   + P  +    +L    +  N++ 
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 425 GEIPE 429
             + E
Sbjct: 580 K-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  197 bits (504), Expect = 3e-56
 Identities = 55/445 (12%), Positives = 124/445 (27%), Gaps = 95/445 (21%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
              ++         P      L    I+++  +  I      +           N +   
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TF 197

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           +  +   +  L+   + N+    E        C                   +  NL +L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL--------SGKIPRWLGNLTRLQCII 173
             +++     + ++P  L     ++ + +  N            +         ++Q I 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 174 MPNNHL-EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR 232
           +  N+L   P+     ++  L +L+   N + G LP+                       
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA----------------------- 348

Query: 233 GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQL 291
             F +   L +L+L+YN++    +++     Q+ +L   HN L+          ++ +  
Sbjct: 349 --FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 292 LDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 351
           +D S N +       F                                            
Sbjct: 407 IDFSYNEIGSVDGKNF-------------------------------------------- 422

Query: 352 IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG-------KIP 404
             P+         + ++NLS+N ++      FS    + S++L  N L            
Sbjct: 423 -DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 405 HQLVELKTLEVFSVAYNNLSGEIPE 429
                   L    + +N L+    +
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (488), Expect = 7e-54
 Identities = 46/429 (10%), Positives = 122/429 (28%), Gaps = 68/429 (15%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG----SIPSSFGNMKFL 72
           ++S+ R+  L +      G +P  I   L  L       +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 73  QFLDLSNNHLTGEIPEHLA-VGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
           +       H      ++       +L    ++++  Q  +   +        +    +  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
              + +++ + + L   Y+ N+    +           +              +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLK 249

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR-------GTFFNCSSLVT 243
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 244 LDLSYNRL-NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
           + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGN 361
             +                                   +  L  + NKL   P      +
Sbjct: 369 PANFCGF----------------------------TEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 421
           ++ +  ++ S+N +       F                   +     +   +   +++ N
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDP-----------------LDPTPFKGINVSSINLSNN 443

Query: 422 NLSGEIPEW 430
            +S    E 
Sbjct: 444 QISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (461), Expect = 4e-50
 Identities = 53/396 (13%), Positives = 123/396 (31%), Gaps = 60/396 (15%)

Query: 42  ADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA 101
                + + FN  ++        S  +   +  L L     +G +P+ +      L  LA
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLA 111

Query: 102 LSNNNLQGHMFSRNF----NLTNLKWLQLEGSRFVGEIPQSLSK--CSSLEGLYLNNNSL 155
           L ++  + +             + +  Q     +         +   S L    +N++  
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 156 SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS 215
              I +      +   I   +N++   +     +L  L+   + ++              
Sbjct: 172 QKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI------- 223

Query: 216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275
                                 C +    +  Y +   +     D L  L+ + + +   
Sbjct: 224 ----------------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335
             ++P  L  L ++QL++++ N          D   L +                     
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV------------------ 303

Query: 336 KVLSLLSGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL 394
                +  + +  N L   P+   +  + ++  L   +N L G +P+ F +   + SL+L
Sbjct: 304 --GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNL 360

Query: 395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           + N++     +     + +E  S A+N L   IP  
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (419), Expect = 2e-44
 Identities = 60/410 (14%), Positives = 119/410 (29%), Gaps = 84/410 (20%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFR-GHIPVEIADVLPSLYAFNNSMNALDG 60
           +S                 +++ ++ I  NN +   +   +   +  L       N L+G
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEG 344

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF---N 117
            +P+ FG+   L  L+L+ N +T  IP +       +  L+ ++N L+       F   +
Sbjct: 345 KLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKS 400

Query: 118 LTNLKWLQLEGSRFVG-------EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 170
           ++ +  +    +            +  +  K  ++  + L+NN +S          + L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 171 CIIMPNNHLEG-------PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 223
            I +  N L              F    LL  +D+  N ++  L   F            
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF------------ 507

Query: 224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH------NNLEG 277
                            LV +DLSYN  +          S L    + +      N    
Sbjct: 508 ----------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 278 EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKV 337
           E P  +     L  L + +N++   +                                  
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEKI------------------------------ 585

Query: 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387
              +S LD+  N  I      +          L ++           ++K
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  209 bits (534), Expect = 4e-59
 Identities = 68/464 (14%), Positives = 155/464 (33%), Gaps = 49/464 (10%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGH-----IPVEIADVLPSLYAFNNSMN 56
               +       ++ +   +RL + D+  +    +     I  +    L       N  N
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTN 435

Query: 57  ALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF 116
            +   I  +   +  LQ +  +N+  T +         V+             +      
Sbjct: 436 RI-TFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWS 488

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG---------KIPRWLGNLT 167
           NL +L  ++L     + ++P  L     L+ L +  N             ++        
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 168 RLQCIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 226
           ++Q   M  N+LE  P      ++  L +LD   N +   L +    + +  + L  N +
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI 607

Query: 227 HGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD--GLSQLSHLILGHNNLEGEVPIQLC 284
             ++          +  L  S+N+L   I +  +   +  +  +   +N +  E     C
Sbjct: 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 285 ELNQLQL-----LDLSNNNLHGPIPSCFDN-TTLHE----KKQIREKFEFTTKNIAYIYQ 334
            ++  +      + LS N +       F   + +         +    E + K     Y+
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 335 GKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
                LL+ +DL  NKL       +   L  +  +++S+N  + S P+   N   +++  
Sbjct: 726 N--TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 394 L------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431
           +        N++  + P  +    +L    +  N++  ++ E  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (489), Expect = 5e-53
 Identities = 61/428 (14%), Positives = 125/428 (29%), Gaps = 58/428 (13%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
               +        +  +  ++ L  L             +P    ++  LQ L+++ N  
Sbjct: 469 WEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 83  TGEIPEHLAV--------GCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVG 133
                                 ++   +  NNL+    S +   +  L  L    ++   
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR-LQCIIMPNNHLEG-PIPVEFCQLD 191
              ++      L  L L+ N +   IP      T  ++ +   +N L+  P       + 
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQ------VHLSKNMLHGQLKRGTFFNCSSLVTLD 245
           ++  +D S N I     +    +   +      V LS N +        F   S + T+ 
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTII 703

Query: 246 LSYNRL-------NGSISDWVDGLSQLSHLILGHNNLEGEVP--IQLCELNQLQLLDLSN 296
           LS N +                    L+ + L  N L   +    +   L  L  +D+S 
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N      P+   N++                      Q K   +    D   N+++   P
Sbjct: 763 NCFSS-FPTQPLNSS----------------------QLKAFGIRHQRDAEGNRILRQWP 799

Query: 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
             I     +  L +  N++          L     LD+++N         +       ++
Sbjct: 800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMY 856

Query: 417 SVAYNNLS 424
            + Y+   
Sbjct: 857 VLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (471), Expect = 1e-50
 Identities = 71/456 (15%), Positives = 137/456 (30%), Gaps = 63/456 (13%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
            LS    S     RL         M +   +  R H      D    L   +   +A++ 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTG------EIPEHLAVGCVNLRFLALSNNNLQGHMFSR 114
           +       +K    + L +  +         I + +      L+ +  +N+       + 
Sbjct: 411 N--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPF-----TY 462

Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIM 174
           +    + +    + ++       S S    L  + L N     ++P +L +L  LQ + +
Sbjct: 463 DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522

Query: 175 PNNHLEGP---------IPVEFCQLDLLQILDISDNNISGSLPSC--FHPLSIKQVHLSK 223
             N              +  +      +QI  +  NN+     S      + +  +    
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQ 282
           N +        F     L  L L YN++     D+     Q+  L   HN L+       
Sbjct: 583 NKVR---HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 283 LCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342
              +  +  +D S N +     +   +   ++                           S
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN-----------------------AS 676

Query: 343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-------GSIPSTFSNLKYVESLDLS 395
            + LS N++           + I T+ LS+N +T             + N   + ++DL 
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 396 NNKLNGKIPHQLV--ELKTLEVFSVAYNNLSGEIPE 429
            NKL   +        L  L    V+YN  S   P 
Sbjct: 737 FNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (466), Expect = 6e-50
 Identities = 51/433 (11%), Positives = 127/433 (29%), Gaps = 57/433 (13%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
           + ++ R+  L ++    +G +P  I   L  L   +   ++   S              +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH---MFSRNFNLTNLKWLQLEGSR-FV 132
              + +     +        L    L  + +  +      +  +  +LK  Q+      +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 133 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL 192
             I +++ + + L+ +Y  N+  +                            + +  L  
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAKQYENEELSWSNLKD 492

Query: 193 LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR--------GTFFNCSSLVT 243
           L  +++ +      LP   + L  ++ ++++ N      +                 +  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 244 LDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
             + YN L     S  +  + +L  L   HN +   +        +L  L L  N +   
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEI 610

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGN 361
                                                 + GL  S NKL   P      +
Sbjct: 611 PEDFCAF----------------------------TDQVEGLGFSHNKLKYIPNIFNAKS 642

Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKY-----VESLDLSNNKLNGKIPHQLVELKTLEVF 416
           +  + +++ S+N +     +   ++         ++ LS N++             +   
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 417 SVAYNNLSGEIPE 429
            ++ N ++  IPE
Sbjct: 703 ILSNNLMT-SIPE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  144 bits (365), Expect = 9e-37
 Identities = 59/408 (14%), Positives = 114/408 (27%), Gaps = 81/408 (19%)

Query: 2   LSLVNDSLGGPFRLP--IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD 59
                       RL     +  ++ +  +  NN            +  L   +   N + 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV- 585

Query: 60  GSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG--HMFSRNFN 117
                +FG    L  L L  N +  EIPE        +  L  S+N L+   ++F+   +
Sbjct: 586 -RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-S 642

Query: 118 LTNLKWLQLEGSRFVGEIPQ-----SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI 172
           +  +  +    ++   E           K  +   + L+ N +           + +  I
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 173 IMPNNHLE-------GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 225
           I+ NN +         P    +    LL  +D+  N ++ SL   F              
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF-------------- 747

Query: 226 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH------NNLEGEV 279
                          L  +D+SYN  + S        SQL    + H      N +  + 
Sbjct: 748 --------RATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 280 PIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS 339
           P  +     L  L + +N++   +                                K+  
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRK-VDE------------------------------KLTP 827

Query: 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387
            L  LD++ N  I      +          L ++            ++
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (326), Expect = 9e-32
 Identities = 53/415 (12%), Positives = 119/415 (28%), Gaps = 64/415 (15%)

Query: 30  NNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEH 89
           + +      +E   V    +   ++    D ++P                      I ++
Sbjct: 225 SQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQL-------------KETAEYIKDY 271

Query: 90  LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLY 149
            A+  +    L   N        +   +  N  + + E   +  +    L     + GL 
Sbjct: 272 KALKAI-WEALDGKNWRYYSGTINNTIHSLNWNFNK-ELDMWGDQPGVDLDNNGRVTGLS 329

Query: 150 LNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 209
           L      G++P  +G LT                         L++L    ++ + S   
Sbjct: 330 LAGFGAKGRVPDAIGQLTE------------------------LKVLSFGTHSETVSGRL 365

Query: 210 CFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHL 268
                L+       K+ +    K+        L   DL  + +N +             L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 269 ----ILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEF 324
               I    N    +   +  L +LQ++  +N+       +        +  +  E  E 
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485

Query: 325 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG------- 377
           +  N         L  L+ ++L     +  +P  + +L  +Q+LN++ N           
Sbjct: 486 SWSN---------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

Query: 378 --SIPSTFSNLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGEIPE 429
              +         ++   +  N L        L ++  L +    +N +   +  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  129 bits (326), Expect = 9e-32
 Identities = 41/322 (12%), Positives = 91/322 (28%), Gaps = 48/322 (14%)

Query: 124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183
           L  +  R+      +     +        +    +    L N  R+  + +     +G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 184 PVEFCQLDLLQILDISDNNISGSLPSCFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSSLV 242
           P    QL  L++L    ++ + S        L+       K+ +    K+        L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHL----ILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
             DL  + +N +             L    I    N    +   +  L +LQ++  +N+ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
                 +                                       +    K      L 
Sbjct: 460 FTYDNIA---------------------------------VDWEDANSDYAKQYENEELS 486

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG---------KIPHQLVE 409
             NL  +  + L +      +P    +L  ++SL+++ N+            ++      
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 410 LKTLEVFSVAYNNLSGEIPEWT 431
              +++F + YNNL       +
Sbjct: 547 GPKIQIFYMGYNNLEEFPASAS 568

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 1/115 (0%)

Query: 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
            ++   LD    +          +       N   +           N   V  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 452
              G++P  + +L  L+V S   ++ +     +  +  T + S    +       
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  200 bits (510), Expect = 3e-57
 Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 54/450 (12%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNN----SMNALDGSIPSSFGNMKFLQFLD 76
             L  LD+S+N  +     ++  VL  +   N     S+N ++   P +F  ++ L  L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM------FSRNFNLTNLKWLQLEGSR 130
           L NN  +  + +    G   L    L     +          S    L NL   +   + 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 131 ---FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
              ++ +I    +  +++    L + ++              Q + + N           
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPT 321

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLDL 246
            +L  L+ L  + N    +      P S++ + LS+N L  +     + F  +SL  LDL
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPS 305
           S+N +    S++  GL QL HL   H+NL+          L  L  LD+S+ +       
Sbjct: 381 SFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTR 364
            F+                             LS L  L ++ N         I   L  
Sbjct: 440 IFNG----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           +  L+LS   L    P+ F++L  ++ L++S+N            L +L+V   + N++ 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 425 GEIPEWTAQFATFNESSY-EGNTFLCGLPL 453
               +    F +         N F C    
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  199 bits (507), Expect = 9e-57
 Identities = 82/448 (18%), Positives = 145/448 (32%), Gaps = 64/448 (14%)

Query: 27  DISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEI 86
                NF   IP    ++  S    + S N L      SF +   LQ LDLS   +    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 87  PEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS 143
                    +L  L L+ N +Q      FS    L++L+ L    +         +    
Sbjct: 69  DGAYQ-SLSHLSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 144 SLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI----LDI 198
           +L+ L + +N + S K+P +  NLT L+ + + +N ++     +   L  + +    LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG----- 253
           S N ++   P  F  + + ++ L  N     + +      + L    L            
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 254 ----------------------------SISDWVDGLSQLSHLILGHNNLEGEVPIQLCE 285
                                        I D  + L+ +S   L    +E         
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-- 302

Query: 286 LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLD 345
               Q L+L N            +         +    F+  +         L  L  LD
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD---------LPSLEFLD 353

Query: 346 LSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
           LS N L   G         T ++ L+LS N +   + S F  L+ +E LD  ++ L    
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 404 PHQ-LVELKTLEVFSVAYNNLSGEIPEW 430
                + L+ L    +++ +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (486), Expect = 9e-54
 Identities = 75/427 (17%), Positives = 134/427 (31%), Gaps = 51/427 (11%)

Query: 19  SHKRLGMLDISNNNFRGHIPVEIADVLPSL------YAFNNSMNALDGSIPSSFGNMKFL 72
              RL  L + NN    ++       L  L           +   L+    S+   +  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 73  QFLDLSNNHL---TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGS 129
              +    +L     +I +       N+   +L +  ++             + L+L   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNC 314

Query: 130 RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL--EGPIPVEF 187
           +F       L     L        S  G       +L  L+ + +  N L  +G      
Sbjct: 315 KFGQFPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 247
                L+ LD+S N +     +      ++ +    + L    +   F +  +L+ LD+S
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 248 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEV-PIQLCELNQLQLLDLSNNNLHGPIPSC 306
           +     + +   +GLS L  L +  N+ +    P    EL  L  LDLS   L    P+ 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ 366
           F++                            LS L  L++S N            L  +Q
Sbjct: 490 FNS----------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 367 TLNLSHNNLTGSIPSTFSNL-KYVESLDLSNNKLNGKIPHQ--LVELKTLEVFSVAYNNL 423
            L+ S N++  S      +    +  L+L+ N       HQ  L  +K      V    +
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 424 SGEIPEW 430
               P  
Sbjct: 582 ECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (464), Expect = 1e-50
 Identities = 81/429 (18%), Positives = 142/429 (33%), Gaps = 66/429 (15%)

Query: 1   TLSLVNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPVEIADV-----LPSLYAFNNS 54
            L+L N+       +  I     L +  +    FR    +E  D      L +L      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 55  MNALDGS---IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNN------ 105
           +  LD     I   F  +  +    L +  +               + L L N       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKFGQFP 320

Query: 106 -------------NLQGHMFSRNFNLTNLKWLQLEGSR--FVGEIPQSLSKCSSLEGLYL 150
                        + +G       +L +L++L L  +   F G   QS    +SL+ L L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPS 209
           + N +   +      L +L+ +   +++L+       F  L  L  LDIS  +   +   
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 210 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHL 268
            F+ L S++ + ++ N          F    +L  LDLS  +L        + LS L  L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 269 ILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN 328
            + HNN           LN LQ+LD S N++         +                   
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH------------------- 540

Query: 329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ--IGNLTRIQTLNLSHNNLTGSIPSTFSNL 386
                     S L+ L+L+ N        Q  +  +   + L +    +  + PS    +
Sbjct: 541 --------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

Query: 387 KYVESLDLS 395
             V SL+++
Sbjct: 593 P-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (434), Expect = 1e-46
 Identities = 81/429 (18%), Positives = 135/429 (31%), Gaps = 55/429 (12%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
             S   L  L ++ N  +       +  L SL         L        G++K L+ L+
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE---GSRFVG 133
           +++N +             NL  L LS+N +Q    +    L  +  L L        + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQCIIMPNNHLEGPIPVE---FCQ 189
            I     K   L  L L NN  S  + +  +  L  L+   +          +E      
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 190 LDLLQILDISDNNIS------GSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLV 242
           L+ L  L I +  ++        +   F+ L ++    L    +        F       
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQ 307

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH-- 300
            L+L   +           L   S   L   + +G       +L  L+ LDLS N L   
Sbjct: 308 HLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG 360
           G                                     + L  LDLS N +I  +     
Sbjct: 363 GCCSQSDFG----------------------------TTSLKYLDLSFNGVIT-MSSNFL 393

Query: 361 NLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 419
            L +++ L+  H+NL      S F +L+ +  LD+S+             L +LEV  +A
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 420 YNNLSGEIP 428
            N+      
Sbjct: 454 GNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 10/85 (11%), Positives = 18/85 (21%), Gaps = 21/85 (24%)

Query: 367 TLNLSHNNLT---------------------GSIPSTFSNLKYVESLDLSNNKLNGKIPH 405
           T      N                            +F +   ++ LDLS  ++      
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 406 QLVELKTLEVFSVAYNNLSGEIPEW 430
               L  L    +  N +       
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGA 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  194 bits (495), Expect = 5e-55
 Identities = 79/431 (18%), Positives = 143/431 (33%), Gaps = 34/431 (7%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
           L  LD++       I  +       L     + N L     ++    K L+ L      +
Sbjct: 59  LTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 83  TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
           +      L      L  L L +N++      + F    LK L  + +       + +S  
Sbjct: 118 SSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 143 SSLEGLYL--NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP--VEFCQLDLLQILDI 198
                L L  N N ++G I     +    Q +          I   ++   +  L +   
Sbjct: 177 QQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 199 SDNNISGSLPSCFHP---LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
            D +     P+ F     +S++ ++L K+     +   TF   S L  LDL+   L+  +
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF--DNTTLH 313
              + GLS L  L+L  N  E    I       L  L +  N     + +    +   L 
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 314 E--------KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365
           E        +       +              LS L  L+LS N+ +           ++
Sbjct: 354 ELDLSHDDIETSDCCNLQLRN-----------LSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 366 QTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           + L+L+   L      S F NL  ++ L+LS++ L+         L  L+  ++  N+  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 425 GEIPEWTAQFA 435
               + T    
Sbjct: 463 KGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (489), Expect = 3e-54
 Identities = 85/421 (20%), Positives = 153/421 (36%), Gaps = 44/421 (10%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSL--YAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
           ++L +LD  NN    ++  E    L      + N + N +   I     +    Q L+  
Sbjct: 153 EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFG 210

Query: 79  NNHLTGEIPEHLA-VGCVNLRFLALSNNNLQG--HMFSRNFNLTNLKWLQLEGSRFVGEI 135
                  I + L      +L      + + +             +++ + L+   F    
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
             +    S L+ L L    LS ++P  L  L+ L+ +++  N  E    +       L  
Sbjct: 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 196 LDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHG-QLKRGTFFNCSSLVTLDLSYNRLN 252
           L I  N     L + C   L +++++ LS + +           N S L +L+LSYN   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 253 GSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
              ++      QL  L L    L+  +       L+ L++L+LS++ L       FD   
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-- 447

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG---NLTRIQTL 368
                                     L  L  L+L  N        +      L R++ L
Sbjct: 448 --------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 369 NLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 428
            LS  +L+      F++LK +  +DLS+N+L       L  LK +   ++A N++S  +P
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540

Query: 429 E 429
            
Sbjct: 541 S 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  172 bits (437), Expect = 5e-47
 Identities = 64/363 (17%), Positives = 111/363 (30%), Gaps = 44/363 (12%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRF 131
            +  N  L  EIP  L     +   L  S N L       FS    L NL +L L   + 
Sbjct: 17  YNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFS---RLINLTFLDLTRCQI 69

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
                 +      L+ L L  N L       L     L+ +      +     +      
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSL--VTLDLSY 248
            L+ L +  N+IS        P   +K +    N +H  L +    +      ++L+L+ 
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNG 188

Query: 249 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQL--CELNQLQLLDLSNNNLHGPIPSC 306
           N +   I       +    L  G       +   L    +  L L    + +     P+ 
Sbjct: 189 NDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ 366
           F+                             +S+ S ++L  +             + +Q
Sbjct: 248 FEGLCE-------------------------MSVES-INLQKHYFFNISSNTFHCFSGLQ 281

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426
            L+L+  +L+  +PS    L  ++ L LS NK             +L   S+  N    E
Sbjct: 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 427 IPE 429
           +  
Sbjct: 341 LGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 91.6 bits (228), Expect = 9e-20
 Identities = 31/187 (16%), Positives = 51/187 (27%), Gaps = 31/187 (16%)

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
           T +     LN  I       +    L    N L          L  L  LDL+   ++  
Sbjct: 16  TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL 362
               F +                               L  L L+ N LI      +   
Sbjct: 73  HEDTFQS----------------------------QHRLDTLVLTANPLIFMAETALSGP 104

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
             ++ L      ++        N K +ESL L +N ++     +    + L+V     N 
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 423 LSGEIPE 429
           +     E
Sbjct: 165 IHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 29/209 (13%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
            +L +LD++    +          L  L   N S + LD S    F  +  LQ L+L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 81  HLTGEIPEHLAV--GCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEI 135
           H      +          L  L LS  +L     H F+   +L  +  + L  +R     
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT---SLKMMNHVDLSHNRLTSSS 516

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE--------------- 180
            ++LS    +  L L +N +S  +P  L  L++ + I +  N L+               
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKEN 575

Query: 181 -----GPIPVEFCQLDLLQILDISDNNIS 204
                           LL+ + +SD  +S
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
            +     L   IP  + N T  + L  S N L     +TFS L  +  LDL+  ++    
Sbjct: 17  YNCENLGLNE-IPGTLPNST--ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 404 PHQLVELKTLEVFSVAYNNLSGEIPEW 430
                    L+   +  N L       
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETA 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  176 bits (448), Expect = 1e-48
 Identities = 81/425 (19%), Positives = 140/425 (32%), Gaps = 54/425 (12%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNN----SMNALDGSIPSSFGNMKFLQFLD 76
             L  +D+S N  +  I V     L      N     S+N +D     +F  +K L  L 
Sbjct: 153 TNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELT 210

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALS------NNNLQGHMFSRNFNLTNLKWLQLEGSR 130
           L  N  +  I +        L    L         NL+    S    L ++   +   + 
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270

Query: 131 --FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFC 188
                +        +++  + L   S+       +    + Q + +    L+        
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTL 325

Query: 189 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN--CSSLVTLDL 246
            L  L+ L ++ N  S S      P S+  + LS+N L       ++ +   +SL  LDL
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDL 383

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPS 305
           S+N     +S    GL +L HL   H+ L+          L +L  LD+S  N       
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTR 364
            F                              L+ L+ L ++ N         +  N T 
Sbjct: 443 IFLG----------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           +  L+LS   L       F  L  ++ L++S+N L         +L +L     ++N + 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 425 GEIPE 429
                
Sbjct: 535 TSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  175 bits (447), Expect = 3e-48
 Identities = 81/421 (19%), Positives = 151/421 (35%), Gaps = 38/421 (9%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
               +      +P    D+  S    + S N L      SF N   LQ+LDLS   +   
Sbjct: 16  YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 86  IPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
             +    G  +L  L L+ N +Q      FS    LT+L+ L    ++        + + 
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFS---GLTSLENLVAVETKLASLESFPIGQL 127

Query: 143 SSLEGLYLNNNSLSG-KIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQL----DLLQILD 197
            +L+ L + +N +   K+P +  NLT L  + +  N+++     +   L     +   LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 198 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS- 256
           +S N I       F  + + ++ L  N     + +    N + L    L         + 
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 257 -----DWVDGLSQLS--HLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
                  ++GL  ++     L + N   +  ++   L  +  + L+  ++   +     +
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKH 306

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                   IR + +              L  L  L L+ NK    I  +   L  +  L+
Sbjct: 307 FKWQSLSIIRCQLKQFPTL--------DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLD 356

Query: 370 LSHNNLTGSIPSTFSNLKYV--ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 427
           LS N L+ S   ++S+L       LDLS N     +    + L+ L+     ++ L    
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415

Query: 428 P 428
            
Sbjct: 416 E 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  153 bits (388), Expect = 2e-40
 Identities = 75/428 (17%), Positives = 129/428 (30%), Gaps = 52/428 (12%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
            H    L  L ++ N  +   P   +  L SL         L        G +  L+ L+
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLN 134

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLT-NLKWLQLEGSRFV 132
           +++N +             NL  + LS N +Q    +              L +  +   
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI- 193

Query: 133 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
             I     +   L  L L  N  S  I +  L NL  L    +     +    +E  +  
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253

Query: 192 LLQ--------ILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLV 242
           +++           ++  N        FH L+ +  + L+   +   L+           
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK--HFKWQ 310

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
           +L +   +L    +     L  L  L L  N     +  +   L  L  LDLS N L   
Sbjct: 311 SLSIIRCQLKQFPT---LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFS 365

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL 362
               + +                             + L  LDLS N  I  +      L
Sbjct: 366 GCCSYSDLG--------------------------TNSLRHLDLSFNGAII-MSANFMGL 398

Query: 363 TRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 421
             +Q L+  H+ L      S F +L+ +  LD+S            + L +L    +A N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 422 NLSGEIPE 429
           +       
Sbjct: 459 SFKDNTLS 466

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (360), Expect = 2e-36
 Identities = 59/313 (18%), Positives = 101/313 (32%), Gaps = 29/313 (9%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD--GSIPSSFGNMKFLQFLDLSN 79
           RL + +  +          I + L  +      +   +        F  +  +  + L+ 
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 80  NHLTGEIPEHLAVGCVNLRFLALSNNNL-------------------QGHMFSRNFNLTN 120
             +   + +         + L++    L                   +G +  +   L +
Sbjct: 295 VSIK-YLEDV--PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351

Query: 121 LKWLQLEGSR--FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
           L +L L  +   F G    S    +SL  L L+ N     +      L  LQ +   ++ 
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410

Query: 179 LEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFF 236
           L+       F  L+ L  LDIS  N        F  L S+  + ++ N          F 
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
           N ++L  LDLS  +L        D L +L  L + HNNL         +L  L  LD S 
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 297 NNLHGPIPSCFDN 309
           N +          
Sbjct: 531 NRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 6e-36
 Identities = 62/378 (16%), Positives = 127/378 (33%), Gaps = 51/378 (13%)

Query: 60  GSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNF 116
           GS+      +  +      +  L+ ++P+ +     + + + LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           N + L+WL L          ++      L  L L  N +    P     LT L+      
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE------ 107

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTF 235
                              L   +  ++         L ++K+++++ N +H       F
Sbjct: 108 ------------------NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLS----HLILGHNNLEGEVPIQLCELNQLQL 291
            N ++LV +DLSYN +     + +  L +       L +  N ++  +  Q  +  +L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 292 LDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL----LSGLDL 346
           L L  N     I   C  N       ++        +N+       +  L    +    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 347 SCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406
           +         ++   L  +  ++L+  ++              +SL +   +L       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTLD 326

Query: 407 LVELKTLEVFSVAYNNLS 424
           L  LK+L   ++  N  S
Sbjct: 327 LPFLKSL---TLTMNKGS 341

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (354), Expect = 8e-36
 Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 16/305 (5%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
              L   +      +  H    +  + ++  + +    V       SL      +     
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-- 322

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ--GHMFSRNFNL 118
                  ++ FL+ L L+ N  +    +   V   +L +L LS N L   G     +   
Sbjct: 323 ----PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNN 177
            +L+ L L  +  +  +  +      L+ L   +++L          +L +L  + +   
Sbjct: 376 NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF--HPLSIKQVHLSKNMLHGQLKRGTF 235
           + +      F  L  L  L ++ N+   +  S    +  ++  + LSK  L   +  G F
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVF 493

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295
                L  L++S+N L    S   + L  LS L    N +E    I       L   +L+
Sbjct: 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

Query: 296 NNNLH 300
           NN++ 
Sbjct: 554 NNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 2e-24
 Identities = 57/254 (22%), Positives = 88/254 (34%), Gaps = 38/254 (14%)

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
           G +      +  +      D  +S  +P    P S K + LS N L   LK  +F N S 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDI-PSSTKNIDLSFNPLKI-LKSYSFSNFSE 57

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           L  LDLS   +         GL  LS+LIL  N ++   P     L  L+ L      L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQI 359
                                                L  L  L+++ N +    +P   
Sbjct: 118 SLESFPIGQ----------------------------LITLKKLNVAHNFIHSCKLPAYF 149

Query: 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKY----VESLDLSNNKLNGKIPHQLVELKTLEV 415
            NLT +  ++LS+N +     +    L+       SLD+S N ++  I  Q  +   L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 416 FSVAYNNLSGEIPE 429
            ++  N  S  I +
Sbjct: 209 LTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.6 bits (215), Expect = 4e-18
 Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 32/190 (16%)

Query: 242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301
           +T      +L+  + D +   S   ++ L  N L+          ++LQ LDLS   +  
Sbjct: 14  ITYQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN 361
                +                              L  LS L L+ N +    P     
Sbjct: 71  IEDKAWHG----------------------------LHHLSNLILTGNPIQSFSPGSFSG 102

Query: 362 LTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAY 420
           LT ++ L      L          L  ++ L++++N ++  K+P     L  L    ++Y
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 421 NNLSGEIPEW 430
           N +       
Sbjct: 163 NYIQTITVND 172

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (402), Expect = 1e-41
 Identities = 103/584 (17%), Positives = 190/584 (32%), Gaps = 92/584 (15%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSI--PSSFGNMKFLQFL 75
            +   L +LD+ ++     +  +    L  L+        L  ++     F N+K L  L
Sbjct: 70  RNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFV 132
           DLS N +             +L+ +  S+N +     H          L +  L  +   
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLY 187

Query: 133 GEIPQSLSKCS------SLEGLYLNNNSLSGKIPR------------WLGNLTRLQCIIM 174
             +     KC        LE L ++ N  +  I               L     +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 175 PNNHLEGPIPVEFCQLDL--LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLK 231
             ++++ P    F  L    ++ LD+S   +       F  L  +K ++L+ N ++ ++ 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIA 306

Query: 232 RGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQL 291
              F+   +L  L+LSYN L    S    GL +++++ L  N++          L +LQ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 292 LDLSNN---------NLHGPIPSCFDNTTLHEK---KQIREKFEFTTKNIAYIYQGKVLS 339
           LDL +N         ++     S     TL +      +    E   +N+  +Y    + 
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426

Query: 340 LLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSI-----PSTFSNLKYVESLD 393
            L  L L+ N+               ++ L L  N L  +         F  L +++ L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ-------------------- 433
           L++N LN   P     L  L   S+  N L+  +                          
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDV 545

Query: 434 FATFNESSYEGNTFLCGLPLP--------------------ICRSPATMSEASIGNER-- 471
           F + +      N F+C   L                      C  P + S  S+ +    
Sbjct: 546 FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

Query: 472 --DDNLIDMNSFFITFTTSYVIVIFATVIILYVNSYWRRRWFYF 513
             D+  +  +  F  F    V +    + IL V  +    +  +
Sbjct: 606 GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (358), Expect = 6e-36
 Identities = 85/435 (19%), Positives = 149/435 (34%), Gaps = 49/435 (11%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           ++L +L++ +      I  E    LP+L   +   + +    P +F  +  L  L L   
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 81  HLTGE-IPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQS 138
            L+   + +        L  L LS N ++      +F  L +LK +    ++        
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 139 LS--KCSSLEGLYLNNNSLSGKIPRWLGNL------TRLQCIIMPNNHLEGPIPVEFCQ- 189
           L   +  +L    L  NSL  ++    G          L+ + +  N     I   F   
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 190 -----------LDLLQILDISDNNISGSLPSCFHPL---SIKQVHLSKNMLHGQLKRGTF 235
                         +       +NI     + F  L   S++ + LS   +   L    F
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVF 286

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295
                L  L+L+YN++N    +   GL  L  L L +N L          L ++  +DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 296 NNNLHGPIPSCFDN----TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 351
            N++       F       TL                +  I+    +  +  + LS NKL
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLD----------LRDNALTTIHF---IPSIPDIFLSGNKL 393

Query: 352 IGPIPLQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE- 409
           +    L   NLT    ++LS N L    I      + +++ L L+ N+ +     Q    
Sbjct: 394 VT---LPKINLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 410 LKTLEVFSVAYNNLS 424
             +LE   +  N L 
Sbjct: 450 NPSLEQLFLGENMLQ 464

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  141 bits (356), Expect = 1e-35
 Identities = 71/386 (18%), Positives = 121/386 (31%), Gaps = 57/386 (14%)

Query: 52  NNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM 111
                 L   +P     +   + L LS N++   +          L+ L L +      +
Sbjct: 10  FYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 112 FSRNF-NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI--PRWLGNLTR 168
               F NL NL+ L L  S+     P +      L  L L    LS  +    +  NL  
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 169 LQCIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL---SIKQVHLSKN 224
           L  + +  N +    +   F +L+ L+ +D S N I         PL   ++    L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 225 MLHGQLKRGTFFNCS------SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE 278
            L+       +  C        L  LD+S N     I+                N +   
Sbjct: 185 SLY-SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG------------NFSNAISKS 231

Query: 279 VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL 338
               L   + +       +N+  P  + F                           G   
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTF--------------------------AGLAR 265

Query: 339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
           S +  LDLS   +          L  ++ LNL++N +       F  L  ++ L+LS N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325

Query: 399 LNGKIPHQLVELKTLEVFSVAYNNLS 424
           L          L  +    +  N+++
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIA 351

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (374), Expect = 5e-40
 Identities = 68/380 (17%), Positives = 142/380 (37%), Gaps = 35/380 (9%)

Query: 45  LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSN 104
             +L      +N +         ++       L    +T  + +       ++  L ++ 
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAG 53

Query: 105 NNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 164
             +          LTNL++L L G++     P  LS    L  LY+  N ++      L 
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQ 107

Query: 165 NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224
           NLT L+ + +  +++    P     L  +  L++  N+    L    +   +  + ++++
Sbjct: 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284
            +          N + L +L L+YN++       +  L+ L +     N +    P  + 
Sbjct: 166 KVK---DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218

Query: 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGL 344
            + +L  L + NN +   +    + + L          E  T  I+ I   K L+ L  L
Sbjct: 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTW-------LEIGTNQISDINAVKDLTKLKML 270

Query: 345 DLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP 404
           ++  N++       + NL+++ +L L++N L          L  + +L LS N +    P
Sbjct: 271 NVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 405 HQLVELKTLEVFSVAYNNLS 424
             L  L  ++    A   + 
Sbjct: 329 --LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 3e-38
 Identities = 76/379 (20%), Positives = 140/379 (36%), Gaps = 55/379 (14%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
                  +   +    +  E  + +  L      + ++ G        +  L++L+L+ N
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNGN 76

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
            +T   P       V L  L +  N +     S   NLTNL+ L L         P  L+
Sbjct: 77  QITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
             + +  L L  N     +   L N+T L  + +  + ++   P     L  L  L ++ 
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186

Query: 201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           N I   +       S+       N +          N + L +L +  N++       + 
Sbjct: 187 NQIE-DISPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDLSP--LA 240

Query: 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
            LSQL+ L +G N +     ++  +L +L++L++ +N +        +N           
Sbjct: 241 NLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISDISV--LNN----------- 285

Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
                            LS L+ L L+ N+L       IG LT + TL LS N++T   P
Sbjct: 286 -----------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 381 STFSNLKYVESLDLSNNKL 399
              ++L  ++S D +N  +
Sbjct: 329 --LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 2e-24
 Identities = 53/284 (18%), Positives = 107/284 (37%), Gaps = 65/284 (22%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           P+ +  ++  L++  N+                            S  S   NM  L +L
Sbjct: 127 PLANLTKMYSLNLGANHNL--------------------------SDLSPLSNMTGLNYL 160

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            ++ + +    P  +A    +L  L+L+ N ++    S   +LT+L +     ++     
Sbjct: 161 TVTESKVKDVTP--IA-NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDIT 215

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
           P  ++  + L  L + NN ++   P  L NL++L  + +  N +          L  L++
Sbjct: 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKM 269

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
           L++  N IS  +                             N S L +L L+ N+L    
Sbjct: 270 LNVGSNQIS-DISV-------------------------LNNLSQLNSLFLNNNQLGNED 303

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
            + + GL+ L+ L L  N++    P+    L+++   D +N  +
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.4 bits (220), Expect = 3e-19
 Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 14/189 (7%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           PI +   L  L ++ N      P+     L    A+ N +  +     +   NM  L  L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSL 226

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            + NN +T   P         L +L +  N +     +   +LT LK L +  ++     
Sbjct: 227 KIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-- 279

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              L+  S L  L+LNNN L  +    +G LT L  + +  NH+    P     L  +  
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 196 LDISDNNIS 204
            D ++  I 
Sbjct: 338 ADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 7e-15
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 40/189 (21%)

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
             TL      +N    D    L++    +L   ++   V  +  EL  +  L ++   + 
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG 360
                                     + I Y      L+ L  L+L+ N++    PL   
Sbjct: 58  SI------------------------QGIEY------LTNLEYLNLNGNQITDISPL--S 85

Query: 361 NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
           NL ++  L +  N +T    S   NL  +  L L+ + ++   P  L  L  +   ++  
Sbjct: 86  NLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 421 NNLSGEIPE 429
           N+   ++  
Sbjct: 142 NHNLSDLSP 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  146 bits (371), Expect = 9e-39
 Identities = 88/415 (21%), Positives = 155/415 (37%), Gaps = 41/415 (9%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
              +        +   N    +     D + +L A    + ++DG        +  L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQI 73

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
           + SNN LT   P  L      L  + ++NN +     +   NLTNL  L L  ++     
Sbjct: 74  NFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
           P  L   ++L  L L++N++S      L  LT LQ +   N   +         L  L+ 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLER 181

Query: 196 LDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
           LDIS N +S    S    L +++ +  + N +            ++L  L L+ N+L   
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKDI 236

Query: 255 ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314
            +  +  L+ L+ L L +N +    P+    L +L  L L  N +   I      T L  
Sbjct: 237 GT--LASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-ISPLAGLTAL-- 289

Query: 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN 374
                   E     +  I     L  L+ L L  N +    P+   +LT++Q L   +N 
Sbjct: 290 -----TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNNK 342

Query: 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
           ++    S+ +NL  +  L   +N+++   P  L  L  +    +     +     
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 2e-37
 Identities = 91/432 (21%), Positives = 161/432 (37%), Gaps = 60/432 (13%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           P+ +  +L  + ++NN      P+     L  L  FNN +  +         N+  L  L
Sbjct: 85  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRL 139

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
           +LS+N ++      L+ G  +L+ L+  N        +   NLT L+ L +  ++     
Sbjct: 140 ELSSNTISD--ISALS-GLTSLQQLSFGNQVTDLKPLA---NLTTLERLDISSNKV--SD 191

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              L+K ++LE L   NN +S   P  LG LT L  + +  N L+         L  L  
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTD 247

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
           LD+++N IS +L        + ++ L  N +            ++L  L+L+ N+L    
Sbjct: 248 LDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDIS 303

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315
              +  L  L++L L  NN+    P+    L +LQ L   NN +                
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSDVSSLAN-------- 351

Query: 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL 375
                                 L+ ++ L    N++    P  + NLTRI  L L+    
Sbjct: 352 ----------------------LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 435
           T +  +  +N+    ++      L    P  + +  +     + +N  S    E +  F+
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFS 444

Query: 436 TFNESSYEGNTF 447
                     TF
Sbjct: 445 QPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 2e-34
 Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 34/362 (9%)

Query: 64  SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKW 123
            +   +       L   ++T  + +        +  L      ++         L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 72

Query: 124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183
           +    ++     P  L   + L  + +NNN ++   P  L NLT L  + + NN +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243
           P     L  L  L++S N IS  + +     S++Q+     +   +       N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVTDLK----PLANLTTLER 181

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
           LD+S N+++  IS  +  L+ L  LI  +N +    P+    L  L  L L+ N L   I
Sbjct: 182 LDISSNKVS-DISV-LAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD-I 236

Query: 304 PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT 363
            +    T L          +     I+ +     L+ L+ L L  N++    PL    LT
Sbjct: 237 GTLASLTNL-------TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL--AGLT 287

Query: 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
            +  L L+ N L    P   SNLK +  L L  N ++   P  +  L  L+      N +
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343

Query: 424 SG 425
           S 
Sbjct: 344 SD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 1e-26
 Identities = 73/384 (19%), Positives = 122/384 (31%), Gaps = 78/384 (20%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             L  L   N       P+     L +L   + S N +  S  S    +  L+ L  +NN
Sbjct: 156 TSLQQLSFGNQ-VTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
            ++   P        NL  L+L+ N L+        +LTNL  L L  ++     P  LS
Sbjct: 210 QISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 262

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
             + L  L L  N +S   P  L  LT L  + +  N LE   P     L  L  L +  
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318

Query: 201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           NNIS   P                            + + L  L    N+++   S  + 
Sbjct: 319 NNISDISP--------------------------VSSLTKLQRLFFYNNKVSDVSS--LA 350

Query: 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
            L+ ++ L  GHN +    P+    L ++  L L++        +   N           
Sbjct: 351 NLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKAN----------- 397

Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
                            +S+ + +      LI P    I +       +++ N  +    
Sbjct: 398 -----------------VSIPNTVKNVTGALIAPA--TISDGGSYTEPDITWNLPS-YTN 437

Query: 381 STFSNLKYVESLDLSNNKLNGKIP 404
                     ++       +G + 
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSGTVT 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (373), Expect = 2e-38
 Identities = 79/417 (18%), Positives = 148/417 (35%), Gaps = 39/417 (9%)

Query: 27  DISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEI 86
                NF   IP    ++  S    + S N L      SF +   LQ LDLS   +   I
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 87  PEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCS 143
            +       +L  L L+ N +Q      FS    L++L+ L    +         +    
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 144 SLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI----LDI 198
           +L+ L + +N + S K+P +  NLT L+ + + +N ++     +   L  + +    LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL------SYNRLN 252
           S N ++   P  F  + + ++ L  N     + +      + L    L      +   L 
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 253 GSISDWVDGLSQLSHLILGHNNLEG---EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
                 ++GL  L+        L+    ++      L  +    L +  +   +     N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYN 303

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                 + +              +    L  L  L  + NK          +L  ++ L+
Sbjct: 304 FGWQHLELVN--------CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLD 353

Query: 370 LSHNNLT--GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           LS N L+  G    +      ++ LDLS N +   +    + L+ LE     ++NL 
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 2e-36
 Identities = 84/421 (19%), Positives = 152/421 (36%), Gaps = 55/421 (13%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNN----SMNALDGSIPSSFGNMKFLQFLD 76
             L  LD+S+N  +  I      VL  +   N     S+N ++   P +F  ++ L  L 
Sbjct: 149 TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLAL------SNNNLQGHMFSRNFNLTNLKWLQLEGSR 130
           L NN  +  + +    G   L    L      +  NL+    S    L NL   +   + 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 131 ---FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQCIIMPNNHLEGPIPVE 186
              ++ +I    +  +++    L + ++       +      L+ +              
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------ 320

Query: 187 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLD 245
             +L  L+ L  + N    +  S     S++ + LS+N L  +     + F  +SL  LD
Sbjct: 321 TLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIP 304
           LS+N +  ++S    GL QL HL   H+NL+          L  L  LD+S+ +      
Sbjct: 380 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLT 363
             F+                             LS L  L ++ N         I   L 
Sbjct: 439 GIFNG----------------------------LSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
            +  L+LS   L    P+ F++L  ++ L++++N+L          L +L+   +  N  
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

Query: 424 S 424
            
Sbjct: 531 D 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (353), Expect = 8e-36
 Identities = 79/435 (18%), Positives = 151/435 (34%), Gaps = 35/435 (8%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           LD+S N  R H+        P L   + S   +      ++ ++  L  L L+ N +   
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-S 90

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF-VGEIPQSLSKCSS 144
           +      G  +L+ L     NL         +L  LK L +  +     ++P+  S  ++
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP----NNHLEGPIPVEFCQLDLLQILDISD 200
           LE L L++N +       L  L ++  + +      N +    P  F ++ L   L + +
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-HKLTLRN 209

Query: 201 NNISGSLPSCF----HPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSYNRLNG 253
           N  S ++          L + ++ L +    G L++          +L   +     L+ 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 254 SISDWVD---GLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPSCFDN 309
            + D +D    L+ +S   L    +E             L+L++                
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 310 TTLHEKKQIREKFEFTTKNIAYIY--------------QGKVLSLLSGLDLSCNKLIGPI 355
            T    K      E    ++ ++                    + L  LDLS N +I  +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 356 PLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLE 414
                 L +++ L+  H+NL      S F +L+ +  LD+S+             L +LE
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 415 VFSVAYNNLSGEIPE 429
           V  +A N+       
Sbjct: 449 VLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 5e-32
 Identities = 69/395 (17%), Positives = 130/395 (32%), Gaps = 74/395 (18%)

Query: 19  SHKRLGMLDISNNNFRGHIPVEIADVLPSL------YAFNNSMNALDGSIPSSFGNMKFL 72
              RL  L + NN    ++       L  L           +   L+    S+   +  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 73  QFLDLSNNHLTGEIPEHLAV--GCVNLRFLALSNNNLQG-HMFSRNFNLTNLKWLQLEGS 129
              +    +L   + + + +     N+   +L +  ++    FS NF   +L+ +  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 130 RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE--GPIPVEF 187
           +F         K  SL+ L   +N           +L  L+ + +  N L   G      
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 246
                L+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPS 305
           S+     + +   +GLS L  L +  N+ +         EL  L  LDLS   L    P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365
            F+                                                    +L+ +
Sbjct: 489 AFN----------------------------------------------------SLSSL 496

Query: 366 QTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
           Q LN++ N L       F  L  ++ + L  N  +
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 8e-23
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 14/247 (5%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
               +     L++ N  F    P      L  L   +N           S  ++  L+FL
Sbjct: 299 DFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNA-----FSEVDLPSLEFL 352

Query: 76  DLSNNHLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVG 133
           DLS N L+          G  +L++L LS N +     S NF  L  L+ L  + S    
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 134 EIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLD 191
               S      +L  L +++             L+ L+ + M  N  +     + F +L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
            L  LD+S   +    P+ F+ L S++ ++++ N L   +  G F   +SL  + L  N 
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNP 529

Query: 251 LNGSISD 257
            + S   
Sbjct: 530 WDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 37/240 (15%)

Query: 193 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            + LD+S N +       F     ++ + LS+  +   ++ G + + S L TL L+ N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL-HGPIPSCFDNT 310
                    GLS L  L+    NL       +  L  L+ L++++N +    +P  F N 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN- 147

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ---- 366
                                      L+ L  LDLS NK+       +  L ++     
Sbjct: 148 ---------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 425
           +L+LS N +    P  F  ++ +  L L NN  +  +    ++ L  LEV  +       
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 13/68 (19%), Positives = 23/68 (33%)

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
              + L+LS N L      +F +   ++ LDLS  ++          L  L    +  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 423 LSGEIPEW 430
           +       
Sbjct: 88  IQSLALGA 95

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (356), Expect = 7e-38
 Identities = 52/351 (14%), Positives = 101/351 (28%), Gaps = 54/351 (15%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFS-RNFNLT 119
                    +     D +  H              N +    +   L+       +    
Sbjct: 27  PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTGRALKATADLLEDATQP 81

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179
               L+L       + P    + S L+ + ++   L  ++P  +     L+ + +  N L
Sbjct: 82  GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239
              +P     L+ L+ L I        LP       +     S                 
Sbjct: 140 RA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASGE----------HQGLV 183

Query: 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           +L +L L +  +  S+   +  L  L  L + ++ L   +   +  L +L+ LDL     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI 359
               P  F                               + L  L L     +  +PL I
Sbjct: 242 LRNYPPIFGG----------------------------RAPLKRLILKDCSNLLTLPLDI 273

Query: 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL 410
             LT+++ L+L        +PS  + L     + +  +       H+ V  
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  129 bits (326), Expect = 1e-33
 Identities = 60/381 (15%), Positives = 111/381 (29%), Gaps = 75/381 (19%)

Query: 60  GSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLT 119
           GS      +    + L    +       + L+      +    ++ N   H   R  N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS----QWQRHYNADRNRW-HSAWRQANSN 56

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSS--LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177
           N +     G          L   +      L L +  L  + P     L+ LQ + +   
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 237
            L   +P    Q   L+ L ++ N +  +LP+                        +  +
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLR-ALPA------------------------SIAS 148

Query: 238 CSSLVTLDLSY-NRL--------NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQ 288
            + L  L +     L        +   S    GL  L  L L    +   +P  +  L  
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 289 LQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSC 348
           L+ L + N+ L   +     +                            L  L  LDL  
Sbjct: 208 LKSLKIRNSPLSA-LGPAIHH----------------------------LPKLEELDLRG 238

Query: 349 NKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408
              +   P   G    ++ L L   +   ++P     L  +E LDL       ++P  + 
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 409 ELKTLEVFSVAYNNLSGEIPE 429
           +L    +  V   +L  ++ +
Sbjct: 299 QLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (287), Expect = 3e-28
 Identities = 48/303 (15%), Positives = 87/303 (28%), Gaps = 37/303 (12%)

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
           +G         S  E LY   ++        L    R         H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLHGQLKR--GTFFNCSSLVTLDL 246
             QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC 306
               L   + D +   + L  L L  N L   +P  +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ 366
             +T    + Q                    L  L  L L    +   +P  I NL  ++
Sbjct: 170 LASTDASGEHQ-------------------GLVNLQSLRLEWTGIRS-LPASIANLQNLK 209

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426
           +L + ++ L+ ++     +L  +E LDL         P        L+   +   +    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 427 IPE 429
           +P 
Sbjct: 269 LPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 16/202 (7%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKF----- 71
           +     L  L ++ N  R  +P  IA  L  L   +         +P    +        
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 72  ----LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQL 126
               LQ L L    +   +P  +A    NL+ L + N+ L          +L  L+ L L
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDL 236

Query: 127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE 186
            G   +   P      + L+ L L + S    +P  +  LT+L+ + +        +P  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 187 FCQLDLLQILDISDNNISGSLP 208
             QL    I+ +  +  +    
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQ 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (361), Expect = 2e-37
 Identities = 68/355 (19%), Positives = 120/355 (33%), Gaps = 42/355 (11%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN---LQGHMFSRNFNLTNLKWLQLEGSRF 131
           +          +PE +       R L L  N    L    F+   +  +L+ L+L  +  
Sbjct: 16  VLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNENIV 68

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
               P + +   +L  L L +N L          L+ L  + +  N +   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
            L+ L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 251 LNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310
           +N         L +L  L + H      +         L  L +++ NL         + 
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH- 246

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNL 370
                                      L  L  L+LS N +       +  L R+Q + L
Sbjct: 247 ---------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS 424
               L    P  F  L Y+  L++S N+L   +   +   +  LE   +  N L+
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  138 bits (350), Expect = 7e-36
 Identities = 72/380 (18%), Positives = 131/380 (34%), Gaps = 67/380 (17%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           +      F   +P  I      L    N +  L+      F +   L+ L+L+ N ++  
Sbjct: 16  VLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLN---QDEFASFPHLEELELNENIVS-A 70

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP-QSLSKCSS 144
           +         NLR L L +N L+                          IP    +  S+
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-------------------------LIPLGVFTGLSN 105

Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204
           L  L ++ N +   +     +L  L+ + + +N L       F  L+ L+ L +   N++
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 205 GSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLS 263
                    L  +  + L    ++  ++  +F     L  L++S+     +++       
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 264 QLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322
            L+ L + H NL   VP      L  L+ L+LS N +     S                 
Sbjct: 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------- 270

Query: 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
                          L  L  + L   +L  + P   +   L  ++ LN+S N LT    
Sbjct: 271 ---------------LLRLQEIQLVGGQLAVVEPYAFR--GLNYLRVLNVSGNQLTTLEE 313

Query: 381 STFSNLKYVESLDLSNNKLN 400
           S F ++  +E+L L +N L 
Sbjct: 314 SVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 31/240 (12%)

Query: 193 LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            ++LD+  N I       F     ++++ L++N++   ++ G F N  +L TL L  NRL
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92

Query: 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
                    GLS L+ L +  N +   +     +L  L+ L++ +N+L       F    
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG-- 150

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLS 371
                                     L+ L  L L    L       + +L  +  L L 
Sbjct: 151 --------------------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 372 HNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431
           H N+      +F  L  ++ L++S+      +    +    L   S+ + NL+  +P   
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 33/237 (13%)

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N ++ 
Sbjct: 14  RAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDNTTL 312
                 + L  L  L L  N L+  +P+ +   L+ L  LD+S N +   +   F +   
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD--- 126

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
                                    L  L  L++  N L+         L  ++ L L  
Sbjct: 127 -------------------------LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
            NLT       S+L  +  L L +  +N    +    L  L+V  +++      +  
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADV--LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
            RL +L+IS+  +   +         L SL   + ++ A+      +  ++ +L+FL+LS
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP---YLAVRHLVYLRFLNLS 256

Query: 79  NNHLTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            N ++  I   +    + L+ + L    L   + + F     L  L+ L + G++     
Sbjct: 257 YNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGNQLTTLE 312

Query: 136 PQSLSKCSSLEGLYLNNNSLS 156
                   +LE L L++N L+
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 34/168 (20%)

Query: 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322
           +Q   ++         VP  +    + +LLDL  N +       F +             
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFAS------------- 54

Query: 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPS 381
                             L  L+L+ N  +  +      NL  ++TL L  N L      
Sbjct: 55  ---------------FPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98

Query: 382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
            F+ L  +  LD+S NK+   + +   +L  L+   V  N+L   I  
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH 145

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 5e-37
 Identities = 70/400 (17%), Positives = 134/400 (33%), Gaps = 41/400 (10%)

Query: 40  EIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99
           EI            + ++L  ++ S   +   ++ LDLS N L+      LA     L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159
           L LS+N L         +L+ L+ L L  +       Q L    S+E L+  NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 160 PRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-SLPSCFHPL-SIK 217
                    +    + NN +     ++      +Q LD+  N I   +         +++
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 218 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 277
            ++L  N ++  +K       + L TLDLS N+L   +       + ++ + L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 278 EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK-------KQIREKFEFTTKNIA 330
            +   L     L+  DL  N  H      F +     +       K++  + E       
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 331 YIYQGK---------VLSLLSGLDLSCNKL-------IGPIPLQIGNLTRIQTLNLSHNN 374
             + G              L  L    + L          +  +  N  R + ++     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLE 414
               I       +   +L+     L+ ++ +       L+
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (319), Expect = 1e-31
 Identities = 59/340 (17%), Positives = 113/340 (33%), Gaps = 45/340 (13%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           N    K  ++  S     +        +++ L L+ N LS      L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N L   +      L  L+ LD+++N +   L       SI+ +H + N     + R +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANN----NISRVSCS 117

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLS 295
                  + L+ N++           S++ +L L  N ++           + L+ L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355
            N ++                                      + L  LDLS NKL   +
Sbjct: 178 YNFIYDVKGQVV------------------------------FAKLKTLDLSSNKLAF-M 206

Query: 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415
             +  +   +  ++L +N L   I       + +E  DL  N  +          K   V
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRV 264

Query: 416 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI 455
            +VA   +  ++     +  T     + G      LP P 
Sbjct: 265 QTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (317), Expect = 2e-31
 Identities = 58/387 (14%), Positives = 115/387 (29%), Gaps = 29/387 (7%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
           +I     N    +   ++++ L  +    L     N++ L LS N L     +     T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 121 LKWLQLEGSRFVGEIP-----------------QSLSKCSSLEGLYLNNNSLSGKIPRWL 163
           L+ L L  +     +                  Q L    S+E L+  NN++S       
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-SLPSCFHPL-SIKQVHL 221
                +    + NN +     ++      +Q LD+  N I   +         +++ ++L
Sbjct: 120 QGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 222 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI 281
             N ++  +K       + L TLDLS N+L   +       + ++ + L +N L   +  
Sbjct: 177 QYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 282 QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLL 341
            L     L+  DL  N  H      F +     +   ++  +  T           L   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 342 SGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401
                          L          L+   +     +     N      +D    +   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRT 350

Query: 402 KIPHQLVELKTLEVFSVAYNNLSGEIP 428
            I    +  +           L  ++ 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (309), Expect = 3e-30
 Identities = 54/328 (16%), Positives = 114/328 (34%), Gaps = 47/328 (14%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
           EI Q+ ++    +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG-PIPSCFDNTTL 312
            +S          ++ L +N +     +     +++Q LDL  N +          +   
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS--- 167

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
                                       L  L+L  N +   +  Q+    +++TL+LS 
Sbjct: 168 -------------------------SDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSS 200

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWT 431
           N L   +   F +   V  + L NNKL   I   L   + LE F +  N    G + ++ 
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 432 AQFATFNESSYEGNTFLCGLPLPICRSP 459
           ++       + +    L G     C  P
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 4e-27
 Identities = 51/414 (12%), Positives = 122/414 (29%), Gaps = 48/414 (11%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            + S   L  LD++NN  +  + V  +  + +L+A NN+++ +      S    +  + +
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELLVGPS--IETLHAANNNISRV------SCSRGQGKKNI 125

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGE 134
            L+NN +T  + +        +++L L  N +    F+    +   L+ L L+ +    +
Sbjct: 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQ 194
           +   +   + L+ L L++N L+  +     +   +  I + NN L   I         L+
Sbjct: 184 VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

Query: 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
             D+  N         F   + +   ++K  +  +L       C+               
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 255 ISDWVDGLSQLSHLILGHNNLEG----EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310
            + + D L  L        + +G     +  +     + + +D         I       
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLR- 358

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNL 370
                                            L+     L   +         +     
Sbjct: 359 ---------------------------KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
                     +T           +        +  Q V+   +  + +  +  +
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (355), Expect = 3e-36
 Identities = 75/433 (17%), Positives = 149/433 (34%), Gaps = 59/433 (13%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
           + +   L +L + ++     I  +    L SL   + S N L     S FG +  L++L+
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEI 135
           L  N         L     NL+ L + N      +   +F  LT+L  L+++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQ- 194
            QSL     +  L L+ +  +  +  +   L+ ++ + + + +L           ++   
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 195 ----------ILDISDNNISGSLPSCFHPLSIKQVHLSKNML-------HGQLKRGTFFN 237
                     + D S N +   L        ++    + N L          +       
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSN 296
             ++  L +    L   +S     L ++  + + ++ +   VP    + L  L+ LDLS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 297 NNL---HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL-- 351
           N +   +    +C                                  L  L LS N L  
Sbjct: 344 NLMVEEYLKNSACKGA----------------------------WPSLQTLVLSQNHLRS 375

Query: 352 IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK 411
           +      +  L  + +L++S N     +P +    + +  L+LS+  +   +   +   +
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQ 431

Query: 412 TLEVFSVAYNNLS 424
           TLEV  V+ NNL 
Sbjct: 432 TLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (353), Expect = 8e-36
 Identities = 77/409 (18%), Positives = 135/409 (33%), Gaps = 28/409 (6%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             L  L I N      I       L SL        +L      S  +++ +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
                + E  A    ++R+L L + NL    FS          ++    R      +S +
Sbjct: 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
           +   L    L  + +         + T         +  +    +   +   ++ L I  
Sbjct: 242 ELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 201 NNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI---S 256
             +   L + +  L  +K++ +  + +   +      +  SL  LDLS N +       S
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 257 DWVDGLSQLSHLILGHNNLE--GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314
                   L  L+L  N+L    +    L  L  L  LD+S N  H    SC     +  
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM-- 412

Query: 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN 374
                     ++  I  +    +   L  LD+S N L     L    L R+Q L +S N 
Sbjct: 413 -----RFLNLSSTGIRVVKTC-IPQTLEVLDVSNNNLDS-FSL---FLPRLQELYISRNK 462

Query: 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 423
           L  ++P   S    +  + +S N+L          L +L+   +  N  
Sbjct: 463 LK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 3e-31
 Identities = 69/409 (16%), Positives = 127/409 (31%), Gaps = 48/409 (11%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
            G+ D  + +F   IP   + +  ++ + + S N +             LQ L L ++ +
Sbjct: 7   SGVCDGRSRSFT-SIP---SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 83  TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS-LSK 141
              I         +L  L LS+N+L                           +  S    
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLS-------------------------SLSSSWFGP 96

Query: 142 CSSLEGLYLNNNSLSG-KIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDIS 199
            SSL+ L L  N      +     NLT LQ + + N      I    F  L  L  L+I 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 200 DNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
             ++          +  I  + L  +     L        SS+  L+L    L       
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP 215

Query: 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318
           +      S +                EL +L    L  + +       FD+ TL+     
Sbjct: 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDF 269

Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
                     +  +        +  L +    L   +      L +++ + + ++ +   
Sbjct: 270 NPSESDVVSELGKVE----TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVE---LKTLEVFSVAYNNLS 424
             S   +LK +E LDLS N +  +            +L+   ++ N+L 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 98.3 bits (245), Expect = 6e-22
 Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 21/258 (8%)

Query: 53  NSMNALDGSIPSSFGNMKFLQFLDLSNNHLTG----EIPEHLAVGCVNLRFLALSNNNLQ 108
           N +   + S       +  ++ + +   H+           +      ++ + + N+ + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 109 GHMFSRNF-NLTNLKWLQLEGSRFVGEIPQS---LSKCSSLEGLYLNNNSLS--GKIPRW 162
             +      +L +L++L L  +  V E  ++        SL+ L L+ N L    K    
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222
           L  L  L  + +  N    P+P      + ++ L++S   I   + +C  P +++ + +S
Sbjct: 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-PQTLEVLDVS 439

Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ 282
            N L              L  L +S N+L  ++ D       L  + +  N L+      
Sbjct: 440 NNNL-----DSFSLFLPRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGI 492

Query: 283 LCELNQLQLLDLSNNNLH 300
              L  LQ + L  N   
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 51/212 (24%)

Query: 236 FNCSSLVT---------------------LDLSYNRLNGSISDWVDGLSQLSHLILGHNN 274
            +C +                        LDLS+N++       +   + L  LIL  + 
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 275 LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ 334
           +          L  L+ LDLS+N+L     S F                           
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP------------------------- 96

Query: 335 GKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESL 392
              LS L  L+L  N      +     NLT +QTL + +      I    F+ L  +  L
Sbjct: 97  ---LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

Query: 393 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           ++    L       L  ++ +   ++  +  +
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (343), Expect = 2e-35
 Identities = 74/389 (19%), Positives = 142/389 (36%), Gaps = 57/389 (14%)

Query: 42  ADVLPSLYAFNNSMNALDGSIPSSF--GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99
           +++      ++  ++     +   F    +   + +   N+ +  ++P  L      +  
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 73

Query: 100 LALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
           L L++  ++    + F+       ++ L +  +      P        L  L L  N LS
Sbjct: 74  LNLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 157 GKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLS 215
                   N  +L  + M NN+LE  I  + F     LQ L +S N ++    S    L 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL- 188

Query: 216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275
               ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL
Sbjct: 189 -FHANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNL 238

Query: 276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335
             +    L     L  +DLS N L   +   F                            
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-------------------------- 270

Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
             +  L  L +S N+L+  + L    +  ++ L+LSHN+L   +         +E+L L 
Sbjct: 271 --MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           +N +   +        TL+  ++++N+  
Sbjct: 327 HNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (332), Expect = 5e-34
 Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 56/411 (13%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS 61
           + +   +    F     +     ++   N+  R  +P  + D    +   N +   ++  
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNL 118
              +F     +Q L +  N +   +P H+      L  L L  N+L      +F    N 
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH---NT 140

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
             L  L +  +        +    +SL+ L L++N L+  +   L  +  L    +  N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 197

Query: 179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 238
           L             ++ LD S N+I+         + +  + L  N L          N 
Sbjct: 198 LS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT---DTAWLLNY 247

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
             LV +DLSYN L   +      + +L  L + +N L   + +    +  L++LDLS+N+
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
           L     +      L                               L L  N +   + L+
Sbjct: 307 LLHVERNQPQFDRLEN-----------------------------LYLDHNSI---VTLK 334

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE 409
           +     ++ L LSHN+   +        + V    + +   + KI +QL  
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  130 bits (328), Expect = 4e-34
 Identities = 59/340 (17%), Positives = 114/340 (33%), Gaps = 45/340 (13%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           N    K  ++  S     +        +++ L L+ N LS      L   T+L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N L   +      L  L+ LD+++N +   L       SI+ +H + N     + R +  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANN----NISRVSCS 117

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLS 295
                  + L+ N++           S++ +L L  N ++           + L+ L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355
            N ++  +        L                               LDLS NKL   +
Sbjct: 178 YNFIYD-VKGQVVFAKLKT-----------------------------LDLSSNKLAF-M 206

Query: 356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415
             +  +   +  ++L +N L   I       + +E  DL  N  +     +    K   V
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRV 264

Query: 416 FSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI 455
            +VA   +  ++     +  T     + G      LP P 
Sbjct: 265 QTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 1e-31
 Identities = 54/328 (16%), Positives = 113/328 (34%), Gaps = 47/328 (14%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
           EI Q+ +     +   + ++SL   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG-PIPSCFDNTTL 312
            +S          ++ L +N +     +     +++Q LDL  N +          +   
Sbjct: 113 RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS--- 167

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
                                       L  L+L  N +   +  Q+    +++TL+LS 
Sbjct: 168 -------------------------SDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSS 200

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWT 431
           N L   +   F +   V  + L NNKL   I   L   + LE F +  N    G + ++ 
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 432 AQFATFNESSYEGNTFLCGLPLPICRSP 459
           ++       + +    L G     C  P
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 5e-31
 Identities = 57/263 (21%), Positives = 105/263 (39%), Gaps = 18/263 (6%)

Query: 40  EIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99
           EI            + ++L  ++ S   +   ++ LDLS N L+ +I          L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI 159
           L LS+N L  +      +L+ L+ L L  +       Q L    S+E L+  NN++S ++
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 160 PRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG-SLPSCFHPL-SIK 217
                     + I + NN +     ++      +Q LD+  N I   +         +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 218 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG 277
            ++L  N ++  +K       + L TLDLS N+L   +       + ++ + L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 278 EVPIQLCELNQLQLLDLSNNNLH 300
            +   L     L+  DL  N  H
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 2e-30
 Identities = 68/371 (18%), Positives = 134/371 (36%), Gaps = 72/371 (19%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
           +I     N    +   ++++ L   +                              +  N
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQ-------------------------SAWN 35

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           +K L L G+         L+  + LE L L++N L   +   L +L+ L+ + + NN+++
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
                E      ++ L  ++NNIS    S       K ++L+ N +   L+       S 
Sbjct: 94  -----ELLVGPSIETLHAANNNISRVSCSRGQGK--KNIYLANNKIT-MLRDLDEGCRSR 145

Query: 241 LVTLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           +  LDL  N ++  + ++       L HL L +N +  +V  Q+    +L+ LDLS+N L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203

Query: 300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI 359
              +   F +                             + ++ + L  NKL+  I   +
Sbjct: 204 AF-MGPEFQS----------------------------AAGVTWISLRNNKLVL-IEKAL 233

Query: 360 GNLTRIQTLNLSHNNLT-GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418
                ++  +L  N    G++   FS  + V+++     K   K+  Q  E  T+     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGH 290

Query: 419 AYNNLSGEIPE 429
                  ++P 
Sbjct: 291 YGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 9/188 (4%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
           +     +  L  +NNN    +         ++Y  NN +  L        G    +Q+LD
Sbjct: 95  LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLR---DLDEGCRSRVQYLD 150

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP 136
           L  N +       LA     L  L L  N +             LK L L  ++    + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMG 207

Query: 137 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL 196
                 + +  + L NN L   I + L     L+   +  N       +        ++ 
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQ 265

Query: 197 DISDNNIS 204
            ++   + 
Sbjct: 266 TVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 45/258 (17%), Positives = 96/258 (37%), Gaps = 16/258 (6%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            + S   L  LD++NN  +  + V  +  + +L+A NN+++ +  S        +  + +
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELLVGPS--IETLHAANNNISRVSCSR------GQGKKNI 125

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGE 134
            L+NN +T  + +        +++L L  N +    F+    +   L+ L L+ +    +
Sbjct: 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D 183

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQ 194
           +       + L+ L L++N L+  +     +   +  I + NN L   I         L+
Sbjct: 184 VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240

Query: 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
             D+  N         F   + +   ++K  +  +L       C+               
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 255 ISDWVDGLSQLSHLILGH 272
            + + D L  L H    H
Sbjct: 300 PAPFADRLIALGHHHHHH 317

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  134 bits (338), Expect = 9e-34
 Identities = 74/389 (19%), Positives = 141/389 (36%), Gaps = 57/389 (14%)

Query: 42  ADVLPSLYAFNNSMNALDGSIPSSF--GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF 99
           +++      ++  ++     +   F    +   + +   N+ +  ++P  L      +  
Sbjct: 21  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79

Query: 100 LALSNN---NLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
           L L++     +  + F+       ++ L +  +      P        L  L L  N LS
Sbjct: 80  LNLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 157 GKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLS 215
                   N  +L  + M NN+LE  I  + F     LQ L +S N ++    S    L 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL- 194

Query: 216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL 275
               ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL
Sbjct: 195 -FHANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNL 244

Query: 276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335
             +    L     L  +DLS N L   +   F                            
Sbjct: 245 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-------------------------- 276

Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
             +  L  L +S N+L+  + L    +  ++ L+LSHN+L   +         +E+L L 
Sbjct: 277 --MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           +N +   +        TL+  ++++N+  
Sbjct: 333 HNSIV-TLKLST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 2e-29
 Identities = 69/342 (20%), Positives = 124/342 (36%), Gaps = 47/342 (13%)

Query: 85  EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSS 144
            I  +L   CV    + +       +    +  L N K +  + S         L     
Sbjct: 18  CIDSNLQYDCV-FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNI 203
           +E L LN+  +             +Q + M  N +   +P   F  + LL +L +  N++
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL 135

Query: 204 SGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262
           S      FH    +  + +S N L  +++  TF   +SL  L LS NRL   +      +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLI 191

Query: 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF 322
             L H  + +N L       L     ++ LD S+N+++                      
Sbjct: 192 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE------------- 233

Query: 323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPST 382
                             L+ L L  N L       + N   +  ++LS+N L   +   
Sbjct: 234 ------------------LTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHP 273

Query: 383 FSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           F  ++ +E L +SNN+L   +      + TL+V  +++N+L 
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 1e-23
 Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 42/386 (10%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             L +L +  N+    +P  I    P L   + S N L+     +F     LQ L LS+N
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
            LT  +   L     +L    +S N L     S       ++ L    +     +   + 
Sbjct: 182 RLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV- 230

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
               L  L L +N+L+     WL N   L  + +  N LE  +   F ++  L+ L IS+
Sbjct: 231 -NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 201 NNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
           N +  +L     P+ ++K + LS N L   ++R        L  L L +N +  ++   +
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQFDRLENLYLDHNSIV-TLK--L 341

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
                L +L L HN+ +      L     +    + + + H  I    ++          
Sbjct: 342 STHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH---------- 389

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                  K     Y  ++L  ++   +        +    G  +   T+N   +      
Sbjct: 390 ---GLCCKESDKPYLDRLLQYIALTSVVEK-----VQRAQGRCSATDTINSVQSLSHYIT 441

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPH 405
                 L+  E L+   N+L  ++  
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  127 bits (322), Expect = 3e-32
 Identities = 85/407 (20%), Positives = 125/407 (30%), Gaps = 71/407 (17%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSNNHLTG 84
           +D+S N+    +       L  L             I + +F  +  L  L L  N    
Sbjct: 35  VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL- 92

Query: 85  EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF--NLTNLKWLQLEGSRFVGEIPQSL-SK 141
           ++      G  NL  L L+  NL G + S NF   LT+L+ L L  +      P S    
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 142 CSSLEGLYLNNN-----------SLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQL 190
                 L L  N           +  GK    L  L+ +    M    L         + 
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 191 DLLQILDISDNNISGSLPSCFHPL--------------SIKQVHLSKNMLHGQLKRGTFF 236
             +  LD+S N    S+   F                                    TF 
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFTFK 270

Query: 237 N--CSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLL 292
               S + T DLS +++  ++   V    + L  L L  N +  ++       L  L  L
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328

Query: 293 DLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352
           +LS N L       F+N                            L  L  LDLS N  I
Sbjct: 329 NLSQNFLGSIDSRMFEN----------------------------LDKLEVLDLSYNH-I 359

Query: 353 GPIPLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNN 397
             +  Q    L  ++ L L  N L  S+P   F  L  ++ + L  N
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (290), Expect = 6e-28
 Identities = 79/384 (20%), Positives = 127/384 (33%), Gaps = 87/384 (22%)

Query: 63  PSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLK 122
            +SF  ++ LQFL +        I  +   G  +L  L L  N                 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-------------- 92

Query: 123 WLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPR-WLGNLTRLQCIIMPNNHLE 180
             QLE          + +  ++LE L L   +L    +   +   LT L+ +++ +N+++
Sbjct: 93  --QLE--------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 181 GPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQV---HLSKNMLH-------GQ 229
              P   F  +    +LD++ N +             K      LS   L        G 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 230 LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC----- 284
            K G  F  +S+ TLDLS N    S++         + +     +    +          
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 285 ----------ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ 334
                     E + ++  DLS + +   + S F +                         
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH------------------------- 297

Query: 335 GKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD 393
               + L  L L+ N+ I  I       LT +  LNLS N L       F NL  +E LD
Sbjct: 298 ---FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 394 LSNNKLNGKIPHQ----LVELKTL 413
           LS N +   +  Q    L  LK L
Sbjct: 354 LSYNHIRA-LGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 9e-19
 Identities = 64/333 (19%), Positives = 115/333 (34%), Gaps = 58/333 (17%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSI--PSSFGNMKFLQFLDLSN 79
            L +L +  N F   +     + L +L     +   LDG++   + F  +  L+ L L +
Sbjct: 80  SLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 80  NHLTGEIPEHLAVGCVNLRFLALSNNNLQ----------GHMFSRNFNLTNLKWLQLEGS 129
           N++    P    +       L L+ N ++                   L+++    +   
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 130 RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTRLQCIIMPNNHLEGP---- 182
               E   +  K +S+  L L+ N     + +        T++Q +I+ N++  G     
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 183 -------------------------------IPVE-FCQLDLLQILDISDNNISGSLPS- 209
                                          +    F     L+ L ++ N I+  +   
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDN 317

Query: 210 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSH 267
            F  L  + +++LS+N L G +    F N   L  LDLSYN +  ++ D    GL  L  
Sbjct: 318 AFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKE 375

Query: 268 LILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           L L  N L+         L  LQ + L  N   
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 55/282 (19%), Positives = 97/282 (34%), Gaps = 30/282 (10%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNM--KFLQFLDLS 78
             L ML + +NN +   P      +   +  + + N +         N   K    L LS
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 79  NNHLT-------GEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
           +  L        G           ++  L LS N  +  M  R F+      +Q      
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 132 VGEIPQSLS---------------KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
              +  S                 + S ++   L+ + +   +     + T L+ + +  
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSC-FHPL-SIKQVHLSKNMLHGQLKRGT 234
           N +       F  L  L  L++S N +  S+ S  F  L  ++ + LS N +   L   +
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 235 FFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNL 275
           F    +L  L L  N+L  S+ D + D L+ L  + L  N  
Sbjct: 367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLY----AFNNSMNA 57
             +    LG         +  +  LD+S N F+  +     D +          +NS N 
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 58  LDGSIPSSFGNMKFLQF----------LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL 107
                 ++F +     F           DLS + +   + + +     +L  L L+ N +
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI 311

Query: 108 QGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 166
              +    F  LT+L  L L  +       +       LE L L+ N +     +    L
Sbjct: 312 N-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 167 TRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 202
             L+ + +  N L+      F +L  LQ + +  N 
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (315), Expect = 9e-31
 Identities = 74/387 (19%), Positives = 135/387 (34%), Gaps = 101/387 (26%)

Query: 14  RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQ 73
           ++    +    +L++  +     +P  +   + +L   +N++     S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLT----SLPALPPE---LR 84

Query: 74  FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG 133
            L++S N LT  +P     G + L   +    +L           + L  L + G++   
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
            +P        L+ L +++N L+  +P     L +L      NN L   +P+    L   
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLWAY---NNQLTS-LPMLPSGL--- 183

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           Q L +SDN ++ SLP+                             S L  L    NRL  
Sbjct: 184 QELSVSDNQLA-SLPTLP---------------------------SELYKLWAYNNRLT- 214

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
           S+       S L  LI+  N L   +P      ++L+ L +S N L   +P         
Sbjct: 215 SLPAL---PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTS-LPMLPSG---- 262

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
                                      L  L +  N+L   +P  + +L+   T+NL  N
Sbjct: 263 ---------------------------LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGN 294

Query: 374 NLTGSIPSTFSNLKYVESLDLSNNKLN 400
            L+     T   L+ + S    +  + 
Sbjct: 295 PLS---ERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 7e-21
 Identities = 70/310 (22%), Positives = 109/310 (35%), Gaps = 74/310 (23%)

Query: 125 QLEGSRFVGEIPQSLSKC--SSLEGLYLNNNSLSGKIPRWLG-NLTRLQCIIMPNNHLEG 181
             E SR    + Q +  C  +    L +  + L+  +P  L  ++T L     P+N+L  
Sbjct: 20  PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVI---PDNNLTS 75

Query: 182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSS 240
            +P    +L   + L++S N ++ SLP     L  +         L            S 
Sbjct: 76  -LPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP--------SG 122

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           L  L +  N+L  S+         L  L +  N L   +P       +L  L   NN L 
Sbjct: 123 LCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT 174

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG 360
             +P                                    L  L +S N+L   +P    
Sbjct: 175 S-LPMLPSG-------------------------------LQELSVSDNQLAS-LPTLPS 201

Query: 361 NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 420
            L +   L   +N LT S+P+  S LK    L +S N+L   +P    ELK L    V+ 
Sbjct: 202 ELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRLTS-LPVLPSELKEL---MVSG 250

Query: 421 NNLSGEIPEW 430
           N L+  +P  
Sbjct: 251 NRLT-SLPML 259

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 6e-15
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           L +S+N     +P   ++ L  L+A+NN + +L             L+ L +S N LT  
Sbjct: 186 LSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-S 235

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
           +P   +     L+ L +S N L     S     + L  L +  ++    +P+SL   SS 
Sbjct: 236 LPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSE 286

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN---HLEGPIPVEFCQLDLLQILDISDNN 202
             + L  N LS +  + L  +T       P           P E   L L     +    
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 203 ISGSLP 208
                P
Sbjct: 347 EGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
            +  + L++  + L   +P  +     I TL +  NNLT S+P+    L+   +L++S N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431
           +L   +P     L  L +FS    +L        
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 48/172 (27%)

Query: 262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREK 321
            +  + L +G + L   +P  L     +  L + +NNL   +P+                
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS-LPALPPE------------ 82

Query: 322 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS 381
                              L  L++S N+L   +P+    L  +   +    +L      
Sbjct: 83  -------------------LRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSG 122

Query: 382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 433
                  +  L +  N+L   +P     L+ L   SV+ N L+  +P   ++
Sbjct: 123 -------LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 2e-30
 Identities = 94/418 (22%), Positives = 155/418 (37%), Gaps = 88/418 (21%)

Query: 14  RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQ 73
           RL     ++   L+++N      +P      L SL A  NS+      +P    ++K L 
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-SLPELPPH-LESLVASCNSLT----ELPELPQSLKSLL 117

Query: 74  FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG 133
             + +   L+   P         L +L +SNN L+                         
Sbjct: 118 VDNNNLKALSDLPP--------LLEYLGVSNNQLE------------------------- 144

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
           ++P  L   S L+ + ++NNSL  K+P    +L  +      NN LE  +P E   L  L
Sbjct: 145 KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAA---GNNQLEE-LP-ELQNLPFL 197

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
             +   +N++   LP    PLS++ +    N+L  +L      N   L T+    N L  
Sbjct: 198 TAIYADNNSLK-KLPD--LPLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLK- 250

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
           ++ D       L  L +  N L  ++P     L  L + +   + L    P+      L+
Sbjct: 251 TLPDL---PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNL---YYLN 303

Query: 314 -EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
               +IR   +                 L  L++S NKLI  +P     L   + L  S 
Sbjct: 304 ASSNEIRSLCDLPPS-------------LEELNVSNNKLIE-LPALPPRL---ERLIASF 346

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           N+L   +P    NLK    L +  N L  + P     ++ L +     N+   E+PE 
Sbjct: 347 NHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPEL 394

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (289), Expect = 8e-28
 Identities = 90/418 (21%), Positives = 146/418 (34%), Gaps = 79/418 (18%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS---------------SFGNMK 70
           L  S N+    +P      L SL   NN++ AL    P                   N  
Sbjct: 96  LVASCNSLT-ELPELPQS-LKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS 153

Query: 71  FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR 130
           FL+ +D+ NN L  ++P+       +L F+A  NN L+        NL  L  +  + + 
Sbjct: 154 FLKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS 206

Query: 131 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQL 190
              ++P       SLE +   NN L       L NL  L  I   NN L+  +P     L
Sbjct: 207 LK-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPSL 259

Query: 191 DLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249
              + L++ DN ++  LP     L  +       + L             +L  L+ S N
Sbjct: 260 ---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP--------NLYYLNASSN 307

Query: 250 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
            +        D    L  L + +N L  E+P       +L+ L  S N+L   +P    N
Sbjct: 308 EIRSLC----DLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAE-VPELPQN 358

Query: 310 -TTLH-EKKQIREKFEFTTKNIAYIYQGKVLSLLSGL-DLSCNKLIGPIPLQIGNLTRIQ 366
              LH E   +RE                   +   + DL  N  +  +P    NL   +
Sbjct: 359 LKQLHVEYNPLRE----------------FPDIPESVEDLRMNSHLAEVPELPQNL---K 399

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
            L++  N L    P    ++   E L +++ ++             LE     +++  
Sbjct: 400 QLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 8e-27
 Identities = 72/367 (19%), Positives = 124/367 (33%), Gaps = 73/367 (19%)

Query: 63  PSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLK 122
           P +  N  FLQ     +++LT E+P        +      + +  + +    N     + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 123 WLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP 182
             +L                     L LNN  LS  +P    +L  L   +   N L   
Sbjct: 62  VSRLRDCL-----------DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-E 105

Query: 183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 242
           +P     L  L + + +   +S   P       ++ + +S N L    K     N S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLE---KLPELQNSSFLK 156

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
            +D+  N L        D    L  +  G+N LE E+P +L  L  L  +   NN+L   
Sbjct: 157 IIDVDNNSL----KKLPDLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK- 209

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL 362
           +P    +                               L  +    N L      ++ NL
Sbjct: 210 LPDLPLS-------------------------------LESIVAGNNILE--ELPELQNL 236

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
             + T+   +N L  ++P    +L+   +L++ +N L   +P     L  L+V    ++ 
Sbjct: 237 PFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DLPELPQSLTFLDVSENIFSG 291

Query: 423 LSGEIPE 429
           LS   P 
Sbjct: 292 LSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 58/317 (18%), Positives = 109/317 (34%), Gaps = 67/317 (21%)

Query: 114 RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCII 173
           RN + T L+      S    E+P       S    Y   +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 174 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233
           + +                   L++++  +S SLP    P  ++ +  S N L  +L   
Sbjct: 65  LRDCLDRQ-----------AHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPEL 109

Query: 234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLD 293
              +  SL+  + +   L+            L +L + +N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 294 LSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 353
           + NN+L   +P    +                               L  +    N+L  
Sbjct: 160 VDNNSLKK-LPDLPPS-------------------------------LEFIAAGNNQLEE 187

Query: 354 PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
            +P ++ NL  +  +   +N+L   +P    +L   ES+   NN L  +   +L  L  L
Sbjct: 188 -LP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFL 239

Query: 414 EVFSVAYNNLSGEIPEW 430
                  N L   +P+ 
Sbjct: 240 TTIYADNNLLK-TLPDL 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 1e-19
 Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 47/298 (15%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            + +   L  +   NN+ +  +P      L S+ A NN +            N+ FL  +
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPLS-LESIVAGNNIL-----EELPELQNLPFLTTI 242

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
              NN L   +P+       +L  L + +N L   +     +LT L   +   S      
Sbjct: 243 YADNNLLK-TLPDLPP----SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELP 296

Query: 136 PQ----SLSKC---------SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP 182
           P     + S            SLE L ++NN L  ++P     L RL   I   NHL   
Sbjct: 297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLAE- 351

Query: 183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 242
           +P     L   + L +  N +    P     +   +++     +             +L 
Sbjct: 352 VPELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEV--------PELPQNLK 399

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
            L +  N L     ++ D    +  L +    +           ++L+     +++ H
Sbjct: 400 QLHVETNPL----REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 3e-30
 Identities = 72/377 (19%), Positives = 131/377 (34%), Gaps = 86/377 (22%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           +  S+      +P ++      L   NN +  +       F N+K L  L L NN ++ +
Sbjct: 36  VQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKIS-K 90

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
           I        V L  L LS N L+                         E+P+ + K  +L
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-------------------------ELPEKMPK--TL 123

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL-EGPIPVE-FCQLDLLQILDISDNNI 203
           + L ++ N ++         L ++  + +  N L    I    F  +  L  + I+D NI
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 204 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLS 263
           + ++P    P S+ ++HL  N +  ++   +    ++L  L LS+N ++   +  +    
Sbjct: 184 T-TIPQ-GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 264 QLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFE 323
            L  L L +N L  +VP  L +   +Q++ L NNN+     + F                
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF---------------- 283

Query: 324 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI--PS 381
                                           P           ++L  N +      PS
Sbjct: 284 ------------------------------CPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

Query: 382 TFSNLKYVESLDLSNNK 398
           TF  +    ++ L N K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (285), Expect = 5e-28
 Identities = 69/340 (20%), Positives = 115/340 (33%), Gaps = 77/340 (22%)

Query: 71  FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN---LQGHMFSRNFNLTNLKWLQLE 127
            L+ +  S+  L  ++P+ L     +   L L NN    ++   F    NL NL  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
            ++     P + +    LE LYL+ N L                  +P    +       
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLK----------------ELPEKMPKT------ 122

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLH-GQLKRGTFFNCSSLVTLD 245
                LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + 
Sbjct: 123 -----LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS 305
           ++   +  +I   +     L+ L L  N +       L  LN L  L LS N++      
Sbjct: 178 IADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365
              N                               L  L L+ NKL+  +P  + +   I
Sbjct: 235 SLAN----------------------------TPHLRELHLNNNKLVK-VPGGLADHKYI 265

Query: 366 QTLNLSHNNLTG------SIPSTFSNLKYVESLDLSNNKL 399
           Q + L +NN++         P   +       + L +N +
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (251), Expect = 2e-23
 Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 53/294 (18%)

Query: 140 SKCS-SLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197
            +C   L  +  ++  L  K+P+ L  +   L    + NN +      +F  L  L  L 
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLPPDTALLD---LQNNKITEIKDGDFKNLKNLHTLI 82

Query: 198 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
           + +N IS   P  F PL  +++++LSKN L  +L         +L  L +  N +   + 
Sbjct: 83  LINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEIT-KVR 137

Query: 257 DWV-DGLSQLSHLILGHNNLEGEVPIQ---LCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312
             V +GL+Q+  + LG N L+    I+      + +L  + +++ N+         +   
Sbjct: 138 KSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--- 193

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNL 370
                                       L+ L L  NK+  +    L+   L  +  L L
Sbjct: 194 ----------------------------LTELHLDGNKITKVDAASLK--GLNNLAKLGL 223

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           S N+++     + +N  ++  L L+NNKL  K+P  L + K ++V  +  NN+S
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             L  L +S N+    +        P L   + + N L   +P    + K++Q + L NN
Sbjct: 216 NNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 81  HLT-----GEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN--FNLTNLKWLQLEGSR 130
           +++        P        +   ++L +N +Q      +    +     +QL   +
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
                L+L +N +T      F NLK + +L L NNK++   P     L  LE   ++ N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 423 LSGEIPE 429
           L  E+PE
Sbjct: 112 LK-ELPE 117

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (297), Expect = 1e-29
 Identities = 75/380 (19%), Positives = 127/380 (33%), Gaps = 87/380 (22%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL 82
           L ++  S+   +  +P EI+     L   NN ++ L       F  ++ L  L L NN +
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKI 90

Query: 83  TGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
           + +I E        L+ L +S N+L                          EIP +L   
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-------------------------EIPPNLPS- 123

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL-EGPIPVEFCQLDLLQILDISDN 201
            SL  L +++N +          L  + CI M  N L              L  L IS+ 
Sbjct: 124 -SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 202 NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-D 260
            ++  +P    P ++ ++HL  N +   ++       S L  L L +N++   I +    
Sbjct: 183 KLT-GIPK-DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS 238

Query: 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
            L  L  L L +N L   VP  L +L  LQ++ L  N                       
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN----------------------- 274

Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI- 379
                  NI  +       +  G+                       ++L +N +     
Sbjct: 275 -------NITKVGVNDFCPVGFGV----------------KRAYYNGISLFNNPVPYWEV 311

Query: 380 -PSTFSNLKYVESLDLSNNK 398
            P+TF  +    ++   N K
Sbjct: 312 QPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 2e-24
 Identities = 68/340 (20%), Positives = 113/340 (33%), Gaps = 78/340 (22%)

Query: 71  FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN---LQGHMFSRNFNLTNLKWLQLE 127
            L+ +  S+  L   +P+ ++    +   L L NN+   L+   F     L +L  L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
            ++      ++ S    L+ LY++ N L                  +P N          
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLVE----------------IPPNLPSS------ 124

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLD 245
                L  L I DN I       F  L ++  + +  N L +   + G F     L  L 
Sbjct: 125 -----LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLR 178

Query: 246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS 305
           +S  +L   I    D    L+ L L HN ++      L   ++L  L L +N +      
Sbjct: 179 ISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365
                                           L  L  L L  NKL   +P  + +L  +
Sbjct: 236 SLSF----------------------------LPTLRELHLDNNKLSR-VPAGLPDLKLL 266

Query: 366 QTLNLSHNNLTGSIPSTFSNLKYV------ESLDLSNNKL 399
           Q + L  NN+T    + F  + +         + L NN +
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 67/295 (22%), Positives = 115/295 (38%), Gaps = 47/295 (15%)

Query: 140 SKCS-SLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197
             C   L  +  ++  L   +P+ +  + T L    + NN +      +F  L  L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEISPDTTLLD---LQNNDISELRKDDFKGLQHLYALV 84

Query: 198 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
           + +N IS      F PL  ++++++SKN L  ++        SSLV L +  NR+     
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPK 140

Query: 257 DWVDGLSQLSHLILGHNNL-EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315
               GL  ++ + +G N L          +  +L  L +S   L G      +       
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET------ 194

Query: 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNN 374
                                    L+ L L  NK I  I L+     +++  L L HN 
Sbjct: 195 -------------------------LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
           +      + S L  +  L L NNKL+ ++P  L +LK L+V  +  NN++ ++  
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 18/239 (7%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           ++L  L IS N+    IP  +   L  L   +N +  +       F  ++ +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP---KGVFSGLRNMNCIEMGGN 157

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ-SL 139
            L     E  A   + L +L +S   L   +         L  L L+ ++    I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 140 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDIS 199
            + S L  L L +N +       L  L  L+ + + NN L   +P     L LLQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 200 DNNISGSLPSCFHPL-------SIKQVHLSKNML-HGQLKRGTFFNCSSLVTLDLSYNR 250
            NNI+    + F P+           + L  N + + +++  TF   +  + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (286), Expect = 2e-28
 Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 36/272 (13%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE--GPIPVEFCQLD 191
            +P  +   SS   L L +N L          LT+L  + + +N L   G          
Sbjct: 21  SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
            L+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+S+  
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 251 LNGSISDWVDGLSQLSHLILGHNN-LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
              + +   +GLS L  L +  N+  E  +P    EL  L  LDLS   L    P+ F++
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                                       LS L  L++S N            L  +Q L+
Sbjct: 198 ----------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 370 LSHNNLTGSIPSTFSNL-KYVESLDLSNNKLN 400
            S N++  S      +    +  L+L+ N   
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  109 bits (275), Expect = 8e-27
 Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 13/256 (5%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLT-G 84
           +  ++      +P  I      L   +N + +L       F  +  L  L LS+N L+  
Sbjct: 12  IRCNSKGLT-SVPTGIPSSATRLELESNKLQSLP---HGVFDKLTQLTKLSLSSNGLSFK 67

Query: 85  EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSL-SKC 142
                   G  +L++L LS N +     S NF  L  L+ L  + S        S+    
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP-NNHLEGPIPVEFCQLDLLQILDISDN 201
            +L  L +++             L+ L+ + M  N+  E  +P  F +L  L  LD+S  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
            +    P+ F+ L S++ +++S N     L    +   +SL  LD S N +  S    + 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 261 GL-SQLSHLILGHNNL 275
              S L+ L L  N+ 
Sbjct: 245 HFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 30/235 (12%)

Query: 22  RLGMLDISNNNFR-GHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           +L  L +S+N         +      SL   + S N +  ++ S+F  ++ L+ LD  ++
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHS 111

Query: 81  HLTGEIPEHLA-VGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEI-PQ 137
           +L  ++ E    +   NL +L +S+ + +   F+  F  L++L+ L++ G+ F     P 
Sbjct: 112 NLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197
             ++  +L  L L+   L    P    +L+ LQ + M +N+        +  L+ LQ+LD
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

Query: 198 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
            S N+I  S                                SSL  L+L+ N   
Sbjct: 230 YSLNHIMTSKKQELQHFP-----------------------SSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 34/195 (17%)

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE--GEVPIQLCELNQLQLLDLSN 296
           SS   L+L  N+L        D L+QL+ L L  N L   G           L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N +   + S F                              L  L  LD   + L     
Sbjct: 88  NGVIT-MSSNFLG----------------------------LEQLEHLDFQHSNLKQMSE 118

Query: 357 LQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ-LVELKTLE 414
             +  +L  +  L++SH +   +    F+ L  +E L ++ N            EL+ L 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 415 VFSVAYNNLSGEIPE 429
              ++   L  ++  
Sbjct: 179 FLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 342 SGLDLSCNKL-IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
           SG ++ CN   +  +P  I   +    L L  N L       F  L  +  L LS+N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 401 GK--IPHQLVELKTLEVFSVAYNNLS 424
            K           +L+   +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 3e-26
 Identities = 61/343 (17%), Positives = 116/343 (33%), Gaps = 56/343 (16%)

Query: 143 SSLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           +    +      LS ++P+ +  N   L    +  N+++      F  L  L++L +  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSNTRYLN---LMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           +I       F+ L S+  + L  N L   +  G F   S L  L L  N +    S   +
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 261 GLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
            +  L  L LG       +       L  L+ L+L   N+   +P+              
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP---------- 216

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                             L  L  L++S N      P     L+ ++ L + ++ ++   
Sbjct: 217 ------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLS-----GEIPEWTAQ 433
            + F  L  +  L+L++N L+  +PH L   L+ L    + +N  +       +  W  +
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317

Query: 434 FATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLI 476
           +   N +               C +P  M    +      +  
Sbjct: 318 YIPTNSTC-----------CGRCHAPMHMRGRYLVEVDQASFQ 349

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 1e-25
 Identities = 56/259 (21%), Positives = 101/259 (38%), Gaps = 16/259 (6%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81
           +   +  +       +P  I      L    N++  +      +F ++  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNS 110

Query: 82  LTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS 138
           +  +I      G  +L  L L +N L       F     L+ L+ L L  +        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 139 LSKCSSLEGLYL-NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197
            ++  SL  L L     L          L  L+ + +   +++  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 198 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
           +S N+     P  FH L S+K++ +  + +   ++R  F   +SLV L+L++N L+    
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPH 283

Query: 257 DWVDGLSQLSHLILGHNNL 275
           D    L  L  L L HN  
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 5e-15
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 32/210 (15%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSN 79
             L  L++ +N     IP    + L  L       N +  SIPS +F  +  L  LDL  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 80  -NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS 138
              L   I E    G  NL++L L   N++                         ++P +
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIK-------------------------DMP-N 213

Query: 139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI 198
           L+    LE L ++ N      P     L+ L+ + + N+ +       F  L  L  L++
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 199 SDNNISGSLPSCFHPL-SIKQVHLSKNMLH 227
           + NN+S      F PL  + ++HL  N  +
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  108 bits (271), Expect = 1e-25
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 16/255 (6%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           +     N R  +P  I+     L    N +  +     +SF +++ L+ L LS NH+   
Sbjct: 48  VICVRKNLR-EVPDGISTNTRLLNLHENQIQIIK---VNSFKHLRHLEILQLSRNHIR-T 102

Query: 86  IPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
           I      G  NL  L L +N L       F     L+ LK L L  +        + ++ 
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 143 SSLEGLYL-NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
            SL  L L     LS         L+ L+ + +   +L   IP     L  L  LD+S N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGN 217

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           ++S   P  F  L  ++++ + ++ +   ++R  F N  SLV ++L++N L     D   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 261 GLSQLSHLILGHNNL 275
            L  L  + L HN  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (262), Expect = 2e-24
 Identities = 63/285 (22%), Positives = 103/285 (36%), Gaps = 40/285 (14%)

Query: 143 SSLEGLYLNNNSLSGKIPRWL-GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           +    +     +L  ++P  +  N   L    +  N ++      F  L  L+IL +S N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           +I       F+ L ++  + L  N L   +  G F   S L  L L  N +    S   +
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 261 GLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
            +  L  L LG       +       L+ L+ L+L+  NL   IP+              
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTP---------- 205

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                             L  L  LDLS N L    P     L  +Q L +  + +    
Sbjct: 206 ------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 423
            + F NL+ +  ++L++N L   +PH L   L  LE   + +N  
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 4e-23
 Identities = 75/329 (22%), Positives = 113/329 (34%), Gaps = 87/329 (26%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
              +     +L  E+P+ ++    N R L L  N +             +K         
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQI-----------QIIK--------- 80

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
                 S      LE L L+ N +   I                           F  L 
Sbjct: 81  ----VNSFKHLRHLEILQLSRNHIR-TIE-----------------------IGAFNGLA 112

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS-YN 249
            L  L++ DN ++      F  L  +K++ L  N +   +    F    SL  LDL    
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

Query: 250 RLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD 308
           RL+  IS+   +GLS L +L L   NL  E+P  L  L +L  LDLS N+L    P  F 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTL 368
                                        L  L  L +  +++         NL  +  +
Sbjct: 229 G----------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 369 NLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
           NL+HNNLT      F+ L ++E + L +N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 36/211 (17%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPS---LYAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
            L  L++ +N     IP      L     L+  NN + ++      +F  +  L+ LDL 
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIP---SYAFNRIPSLRRLDLG 168

Query: 79  -NNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ 137
               L+  I E    G  NLR+L L+  NL+                         EIP 
Sbjct: 169 ELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-------------------------EIP- 201

Query: 138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD 197
           +L+    L+ L L+ N LS   P     L  LQ + M  + ++      F  L  L  ++
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 198 ISDNNISGSLPSCFHPL-SIKQVHLSKNMLH 227
           ++ NN++      F PL  ++++HL  N  +
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
             L  LD+       +I     + L +L   N +M  L   IP +   +  L  LDLS N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ 137
           HL+  I      G ++L+ L +  + +   + + F    NL +L  + L  +        
Sbjct: 218 HLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD---NLQSLVEINLAHNNLTLLPHD 273

Query: 138 SLSKCSSLEGLYLNNNSL 155
             +    LE ++L++N  
Sbjct: 274 LFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 18/191 (9%)

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
           +    +      L   + D +   +    L L  N ++         L  L++L LS N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 299 LHGPIPSCFDN-TTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGPI 355
           +       F+    L+         E     +  I  G    LS L  L L  N  I  I
Sbjct: 100 IRTIEIGAFNGLANLNT-------LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESI 151

Query: 356 PLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
           P      +  ++ L+L        I    F  L  +  L+L+   L  +IP+ L  L  L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKL 209

Query: 414 EVFSVAYNNLS 424
           +   ++ N+LS
Sbjct: 210 DELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 422
           T  + LNL  N +     ++F +L+++E L LS N +          L  L    +  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 423 LSGEIPE 429
           L+  IP 
Sbjct: 124 LT-TIPN 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (266), Expect = 2e-25
 Identities = 57/274 (20%), Positives = 109/274 (39%), Gaps = 13/274 (4%)

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLL 193
           IP  L+   +++ L L+NN ++      L     LQ +++ +N +   I  + F  L  L
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 194 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 253 GSISD-WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
             I      GL+ L  L +  ++L+   P  L  +  +  L L        +    D T+
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSL-----LSGLDLSCNKLIGPIPLQIGNLTRIQ 366
             E  ++R+  +  T + + +  G+  SL        + ++   L   +   +  ++ + 
Sbjct: 223 SVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLL 280

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
            L  S N L       F  L  ++ + L  N  +
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (254), Expect = 7e-24
 Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 22/287 (7%)

Query: 27  DISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEI 86
             S+ +    IP  + + + SL   NN +  +     S       LQ L L++N +   I
Sbjct: 37  KGSSGSLN-SIPSGLTEAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGIN-TI 91

Query: 87  PEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSL-SKC 142
            E       +L  L LS N L       F     L++L +L L G+ +      SL S  
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFK---PLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 143 SSLEGLYLNNNSLSGKIP-RWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           + L+ L + N     KI  +    LT L+ + +  + L+   P     +  +  L +   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLHG----QLKRGTFFNCSSLVTL---DLSYNRLNG 253
                L        S++ + L    L      +L  G   +     T     ++   L  
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF- 267

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
            +   ++ +S L  L    N L+         L  LQ + L  N   
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 15/228 (6%)

Query: 179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNC 238
            E          D   I   S  +++ S+PS     ++K + LS N +   +       C
Sbjct: 19  KEESSNQASLSCDRNGICKGSSGSLN-SIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRC 75

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSN 296
            +L  L L+ N +N +I +     L  L HL L +N L   +     + L+ L  L+L  
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGP 354
           N    P  +  + +      +++            I +     L+ L  L++  + L   
Sbjct: 134 N----PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNG 401
            P  + ++  +  L L        +          VE L+L +  L+ 
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 15/193 (7%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSN 79
             L  L++  N ++      +   L  L             I    F  + FL+ L++  
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 80  NHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLT--NLKWLQLEGSRFVGE 134
           + L             N+  L L                 ++    L+   L+   F  E
Sbjct: 184 SDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-E 241

Query: 135 IP----QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQ 189
           +      SL K  +   + + + SL  ++ + L  ++ L  +    N L+  +P   F +
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDR 299

Query: 190 LDLLQILDISDNN 202
           L  LQ + +  N 
Sbjct: 300 LTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 41/241 (17%), Positives = 84/241 (34%), Gaps = 37/241 (15%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNN 80
            L  LD+S N    ++       L SL   N   N       +S F ++  LQ L + N 
Sbjct: 101 SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
               +I      G   L  L +  ++LQ +                         P+SL 
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYE------------------------PKSLK 195

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE--------FCQLDL 192
              ++  L L+       +  ++   + ++C+ + +  L+     E          +   
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 193 LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            + + I+D ++   +    + +  + ++  S+N L   +  G F   +SL  + L  N  
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

Query: 252 N 252
           +
Sbjct: 314 D 314

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (271), Expect = 3e-25
 Identities = 78/405 (19%), Positives = 137/405 (33%), Gaps = 32/405 (7%)

Query: 15  LPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQ- 73
           +  H    L  LD+S N F      +    +  L     S   L+ S      ++   + 
Sbjct: 84  ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 74  FLDLSNNHLTGEIPEHLA-VGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV 132
            L L   +   E PE L      +L  +  +N      +      + NL+   ++     
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 133 GEIPQSLSKCSSLEG------LYLNNNSLSGKIPRWLGNL---TRLQCIIMPNNHLEGPI 183
            +    LS  + L+       L LNN   +      +  L   T +    + N  L+G +
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 184 PVE-----FCQLDLLQILDISDNNISGSLPSCFHPLS---IKQVHLSKNMLHGQLKRGTF 235
                      L  L I  +  +         +   S   IK   +S       +     
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RMVHMLCP 320

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE--GEVPIQLCELNQLQLLD 293
              S  + LD S N L  ++ +    L++L  LIL  N L+   ++     ++  LQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380

Query: 294 LSNNNL-HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 352
           +S N++ +         T              ++  +       +   +  LDL  NK+ 
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLS------LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434

Query: 353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
             IP Q+  L  +Q LN++ N L       F  L  ++ + L  N
Sbjct: 435 S-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.5 bits (240), Expect = 2e-21
 Identities = 69/368 (18%), Positives = 119/368 (32%), Gaps = 27/368 (7%)

Query: 74  FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFV 132
            +D S N L   +P+ L+        L +S N +   +++ +  +L+ L+ L +  +R  
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ---KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 133 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG-PIPVEFCQLD 191
                       LE L L++N L         NL  L    +  N  +  PI  EF  + 
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNAFDALPICKEFGNMS 115

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            L+ L +S  ++  S       L+I +V L     +G+ +           T  L     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFP 173

Query: 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN-------------- 297
                 ++  +S  +   L  +N++  +    C      L  L  N              
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 298 -NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
            N    I     +TT+        K +       + Y G  L  LS   +  +    P  
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
                 + +   N + +          S +     LD SNN L   +      L  LE  
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 417 SVAYNNLS 424
            +  N L 
Sbjct: 354 ILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 60/307 (19%), Positives = 103/307 (33%), Gaps = 14/307 (4%)

Query: 3   SLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSI 62
            +++ S+     L + + K +   +  +        ++    L +L   N          
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 63  PSSFGNMKFLQFLDLSNNHLTG----EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL 118
                    + +  +SN  L G       ++       L    + ++             
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
           +N+       S          SK S    L  +NN L+  +    G+LT L+ +I+  N 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 179 LE--GPIPVEFCQLDLLQILDISDNNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGT 234
           L+    I     Q+  LQ LDIS N++S       C    S+  +++S N     L    
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTI 415

Query: 235 FFNCSSLVT-LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLD 293
           F      +  LDL  N++  SI   V  L  L  L +  N L+         L  LQ + 
Sbjct: 416 FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

Query: 294 LSNNNLH 300
           L  N   
Sbjct: 475 LHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 8e-17
 Identities = 57/374 (15%), Positives = 110/374 (29%), Gaps = 27/374 (7%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQF-LDLSN 79
            +L  L +S  +      + IA +  S           +   P    +       +    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 80  NHLTGEIPEHLAVGCVNLRFLALSNN---NLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP 136
           N     I +       NL    +      N   +  S    L     L       +    
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 137 QSLSKC------SSLEGLYLNNNSLSGKIPRWLG-----NLTRLQCIIMPNNHLEGPIPV 185
            S  +       +++    ++N  L G++          +L  L    + ++    P   
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 186 EFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 244
            +     + I + + +        C         +  S N+L          + + L TL
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETL 353

Query: 245 DLSYNRLN--GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHG 301
            L  N+L     I++    +  L  L +  N++  +     C     L  L++S+N L  
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413

Query: 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN 361
            I  C     +        K +   K +        L  L  L+++ N+L          
Sbjct: 414 TIFRCLP-PRIKVLDLHSNKIKSIPKQVVK------LEALQELNVASNQLKSVPDGIFDR 466

Query: 362 LTRIQTLNLSHNNL 375
           LT +Q + L  N  
Sbjct: 467 LTSLQKIWLHTNPW 480

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (267), Expect = 6e-25
 Identities = 72/383 (18%), Positives = 122/383 (31%), Gaps = 49/383 (12%)

Query: 43  DVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102
           D   S  A    M A D     S   +  L  LD  N+ +T ++          L  L  
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLIC 71

Query: 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 162
           ++NN+     S     TNL +L  + ++    +   ++  + L  L  + N L+      
Sbjct: 72  TSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222
              LT L C     N L     ++      L  LD   N     L        +  +  S
Sbjct: 126 NPLLTYLNC---ARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCS 178

Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ 282
            N    ++          L  L+   N +   +   ++   QL+ L    N L     I 
Sbjct: 179 FN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---ID 228

Query: 283 LCELNQLQLLDLSNNNLHGPIPSCFDN-TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLL 341
           +  L QL   D S N L     S     TTLH              ++  I       L+
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH----------CIQTDLLEIDLTHNTQLI 278

Query: 342 SGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401
                          L + + T++  L+     +T  +    S    +  L L+N +L  
Sbjct: 279 Y---FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT- 331

Query: 402 KIPHQLVELKTLEVFSVAYNNLS 424
           ++   +     L+  S    ++ 
Sbjct: 332 ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 72/444 (16%), Positives = 126/444 (28%), Gaps = 69/444 (15%)

Query: 15  LPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQF 74
           L +  +  L  L   +N    ++ V     L  L    N +  LD            L +
Sbjct: 79  LDLSQNTNLTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTY 131

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE 134
           L+ + N LT EI          L  L    N             T L  L    ++    
Sbjct: 132 LNCARNTLT-EID---VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL 185

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQ 194
               +S+   L  L  + N+++ K+   L    +L  +   +N L     ++   L  L 
Sbjct: 186 ---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLT 236

Query: 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
             D S N ++  L        +  +H  +      L      + + L+       R    
Sbjct: 237 YFDCSVNPLT-ELDVS-TLSKLTTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 255 ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314
           +   V   +QL  L      +     + L +  +L  L L+N  L          T L  
Sbjct: 291 LD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL----------TELDV 335

Query: 315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN 374
                                   + L  L      +       +G +  +     +   
Sbjct: 336 SH---------------------NTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQ 372

Query: 375 LTGSIPSTFSNLKYVESLDLSNNKLNG---KIPHQLVELKTLEVFSVAYNNLSGEIPEWT 431
                  T +N     ++        G    I      +      ++ + NLS + P  T
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

Query: 432 AQFATFNESSYEGNTFLCGLPLPI 455
             F + N +     T     P PI
Sbjct: 433 YTFTSENGAIVGTVTTPFEAPQPI 456

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 3e-23
 Identities = 77/418 (18%), Positives = 144/418 (34%), Gaps = 55/418 (13%)

Query: 23  LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS--FGNMKFLQFLDLSNN 80
           L  LD+S+N  + +I       + SL   + S N  D  +P    FGN+  L FL LS  
Sbjct: 102 LEYLDVSHNRLQ-NIS---CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAA 156

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
                    +A   ++   L L + +++G     +  + N   L L          Q   
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNL---------------------------------- 166
             ++L  L L+N  L+ +  + L                                     
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 167 TRLQCIIMPNNHLEGPIPVEF-----CQLDLLQILDISDNNISGSLPSCFHPLSIKQV-H 220
             ++ + + N  +   I  E        L  L I  + +     S  + +   +   +  
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 221 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP 280
           LS +     +      + SS   L+ + N    S+      L +L  LIL  N L+    
Sbjct: 336 LSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF 393

Query: 281 IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL 340
                   +  L+  + +L+      +D T    +         ++  +       +   
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES--ILVLNLSSNMLTGSVFRCLPPK 451

Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNN 397
           +  LDL  N+++  IP  + +L  +Q LN++ N L  S+P   F  L  ++ + L +N
Sbjct: 452 VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 73/372 (19%), Positives = 136/372 (36%), Gaps = 28/372 (7%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEG 128
            + L LS N ++ E+          LR L LS+N ++    H+F       +L++L +  
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF---NQDLEYLDVSH 109

Query: 129 SRFVGEIPQSLS--KCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNHLEGPIPV 185
           +R      Q++S    +SL  L L+ N      + +  GNLT+L  + +          +
Sbjct: 110 NRL-----QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 186 EFCQLDLLQI-LDISDNNISGSLPSCFHPLSIKQVHL--SKNMLHGQLKRGTFFNCSSLV 242
               L L  I LD+   +I G         +   +HL    N L       +      L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 243 TLDLSYNRLNG----SISDWVDGLSQLSHLILGHNNLEGEVPI---QLCELNQLQLLDLS 295
             ++  N  N     +    +     L ++ L H     +  +   Q      ++ L++ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 296 NNNLHGPIP-SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP 354
           N  +   I    F  +    K  + E  +      +      V + ++   LS +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN--GKIPHQLVELKT 412
             +   + +    LN + N  T S+    S LK +++L L  N L    K+      + +
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 413 LEVFSVAYNNLS 424
           LE   V+ N+L+
Sbjct: 405 LETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 26/311 (8%)

Query: 6   NDSLGGPFRLPIHSHKRLGMLDIS-NNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS 64
           N        + +++   L + +I  N+     +   ++++       N ++  ++ +   
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 65  SFGNMKF-----LQFLDLSNNHLTGEIPEHLAVGC----VNLRFLALSNNNLQGHMFSRN 115
           S    +F     +++L++ N  +T  I             +L    + N        +  
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325

Query: 116 FNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP 175
                +    L  S             SS   L    N  +  + +    L RLQ +I+ 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS------CFHPLSIKQVHLSKNMLHGQ 229
            N L+            +  L+  D +++ SL S      C    SI  ++LS NML G 
Sbjct: 386 RNGLKN-FFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG- 442

Query: 230 LKRGTFFNC--SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN 287
               + F C    +  LDL  NR+  SI   V  L  L  L +  N L+         L 
Sbjct: 443 ----SVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 288 QLQLLDLSNNN 298
            LQ + L +N 
Sbjct: 498 SLQYIWLHDNP 508

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 2e-22
 Identities = 56/347 (16%), Positives = 98/347 (28%), Gaps = 76/347 (21%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL-QGHMFSRNFNLT 119
           SI     N   L   +   N ++                 AL   N  +     +   + 
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL 179
               LQL        +P +L     +  L +  N+L   +P    +L  L      +N L
Sbjct: 60  QFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLDA---CDNRL 112

Query: 180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 239
              +P     L   + LD+ +N ++  LP                              +
Sbjct: 113 ST-LPELPASL---KHLDVDNNQLT-MLPELP---------------------------A 140

Query: 240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
            L  ++   N+L   + +     + L  L + +N L   +P        L+ LD+S N L
Sbjct: 141 LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLL 192

Query: 300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI 359
              +P+        E+                                 N++   IP  I
Sbjct: 193 ES-LPAVPVRNHHSEE------------------------TEIFFRCRENRITH-IPENI 226

Query: 360 GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ 406
            +L    T+ L  N L+  I  + S               +     Q
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.6 bits (240), Expect = 2e-21
 Identities = 47/286 (16%), Positives = 98/286 (34%), Gaps = 49/286 (17%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           ++  +   + N     +   + +    L     ++++L  ++P        +  L+++ N
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ------ITVLEITQN 90

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS 140
            L   +PE  A    +L +L   +N L     +      +LK L ++ ++    +P+   
Sbjct: 91  ALI-SLPELPA----SLEYLDACDNRLS----TLPELPASLKHLDVDNNQLT-MLPELP- 139

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
             + LE +  +NN L+  +P    +L  L    + NN L   +P      + L+ LD+S 
Sbjct: 140 --ALLEYINADNNQLT-MLPELPTSLEVL---SVRNNQLTF-LPE---LPESLEALDVST 189

Query: 201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD 260
           N +  SLP+                   +          + +      NR+   I + + 
Sbjct: 190 NLLE-SLPAVP----------------VRNHHSE----ETEIFFRCRENRIT-HIPENIL 227

Query: 261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC 306
            L     +IL  N L   +   L +                     
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 53/284 (18%), Positives = 94/284 (33%), Gaps = 31/284 (10%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH 81
            L  LD+ NN     +P   A  L  + A NN +  L    P    +   L+ L + NN 
Sbjct: 121 SLKHLDVDNNQLT-MLPELPAL-LEYINADNNQLTML----PELPTS---LEVLSVRNNQ 171

Query: 82  LTGEIPEHLAVGCVNLRFLALSNNNLQG--HMFSRNFNLTNL-KWLQLEGSRFVGEIPQS 138
           LT  +PE       +L  L +S N L+    +  RN +      + +   +R    IP++
Sbjct: 172 LT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI 198
           +        + L +N LS +I   L   T       P  +    +           + D 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADA 283

Query: 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---I 255
                  +  S         V    +    +    TF      ++  +S    +G    +
Sbjct: 284 VTAWFPENKQS--------DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           + W++ LS  + L      +  +      +   L   +L    L
Sbjct: 336 AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 56/266 (21%), Positives = 88/266 (33%), Gaps = 57/266 (21%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
            +P  +   ++ + ++L+ N +S            L  + + +N L       F  L LL
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           + LD+SDN    S+                          TF     L TL L    L  
Sbjct: 83  EQLDLSDNAQLRSVDP-----------------------ATFHGLGRLHTLHLDRCGLQ- 118

Query: 254 SI-SDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDNTT 311
            +      GL+ L +L L  N L+  +P      L  L  L L  N +       F    
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-- 175

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLS 371
                                     L  L  L L  N++    P    +L R+ TL L 
Sbjct: 176 --------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 372 HNNLTGSIPSTFSNLKYVESLDLSNN 397
            NNL+       + L+ ++ L L++N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 5e-22
 Identities = 56/246 (22%), Positives = 84/246 (34%), Gaps = 38/246 (15%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFN 117
           ++P         Q + L  N ++  +P      C NL  L L +N L       F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 118 LTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           L  L+ L L  +  +  +  +       L  L+L+   L    P     L  LQ + + +
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 177 NHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235
           N L+  +P + F  L  L  L +  N IS                         +    F
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRIS------------------------SVPERAF 173

Query: 236 FNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDL 294
               SL  L L  NR+   +       L +L  L L  NNL       L  L  LQ L L
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 295 SNNNLH 300
           ++N   
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           + +  N    H+P        +L       N L     ++F  +  L+ LDLS+N     
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 86  IPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIP-QSLSK 141
           +      G   L  L L    LQ     +F     L  L++L L+ +     +P  +   
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
             +L  L+L+ N +S    R    L  L  +++  N +    P  F  L  L  L +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 202 NISGSLPSCFHPL-SIKQVHLSKNMLH 227
           N+S        PL +++ + L+ N   
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 5e-18
 Identities = 49/239 (20%), Positives = 77/239 (32%), Gaps = 34/239 (14%)

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 247
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 248 YNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPSC 306
            N L    +    GL+ L  L L  N     V       L +L  L L    L    P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRI 365
           F                              L+ L  L L  N  +  +P     +L  +
Sbjct: 125 FRG----------------------------LAALQYLYLQDNA-LQALPDDTFRDLGNL 155

Query: 366 QTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
             L L  N ++      F  L  ++ L L  N++    PH   +L  L    +  NNLS
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
              + L  N++             +  L L  N L     + F+ L  +E LDLS+N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 401 GKIP----HQLVELKTLEVFSVAYNNLSGEIPE 429
             +     H L  L TL    +    L  E+  
Sbjct: 94  RSVDPATFHGLGRLHTL---HLDRCGLQ-ELGP 122

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.1 bits (239), Expect = 4e-22
 Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 25/259 (9%)

Query: 38  PVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQF-----LDLSNNHLTGEIPEHLAV 92
             +  D++ SL     ++ A        FG ++ L       L L N  +TG  P  L  
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 93  GC-VNLRFLALSNNNLQGHMFS----RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEG 147
               +L  L L N +           + +    LK L +  +  +    + +    +L  
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 148 LYLNNNSLSGKIPRW----LGNLTRLQCIIMPNNHLE---GPIPVEFCQLDLLQILDISD 200
           L L++N   G+              LQ + + N  +E   G           LQ LD+S 
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 201 NNISGSLP--SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
           N++  +    SC  P  +  ++LS   L  Q+ +G     + L  LDLSYNRL+ + S  
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRNPSPD 293

Query: 259 VDGLSQLSHLILGHNNLEG 277
              L Q+ +L L  N    
Sbjct: 294 --ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 51/283 (18%), Positives = 89/283 (31%), Gaps = 22/283 (7%)

Query: 37  IPVEIADVLPSLYAFNNSMNA-LDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHL--AVG 93
             VE+     SL      ++   D    +       L+ L +    +   I       +G
Sbjct: 34  ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 94  CVNLRFLALSNNNLQGHMFSRNFNLT--NLKWLQLEGSRFVGEIPQSLS----KCSSLEG 147
              L+ L L N  + G         T  +L  L L    +                 L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE----FCQLDLLQILDISDNN- 202
           L +            +     L  + + +N   G   +       +   LQ+L + +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 203 --ISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
              SG   +       ++ + LS N L       +    S L +L+LS+  L   +   +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGP 302
              ++LS L L +N L+   P    EL Q+  L L  N     
Sbjct: 273 --PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 4e-20
 Identities = 55/296 (18%), Positives = 90/296 (30%), Gaps = 56/296 (18%)

Query: 138 SLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQ 194
            + K  SL+ L +    +  +I      +  ++ LQ + + N  + G  P    +     
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
           +  ++  N+S +    +                  L     +    L  L ++       
Sbjct: 123 LNILNLRNVSWATRDAW------------------LAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 255 ISDWVDGLSQLSHLILGHNNLEGEVP----IQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310
             + V     LS L L  N   GE      +   +   LQ+L L N  +  P   C    
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLN 369
                                         L GLDLS N L            +++ +LN
Sbjct: 225 AA-------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 370 LSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 425
           LS   L        + L     LDLS N+L+   P    EL  +   S+  N    
Sbjct: 260 LSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 13/224 (5%)

Query: 214 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW---VDGLSQLSHLIL 270
            S++ +    +      +        SL  L +   R+   I      V G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 271 GHNNLEGEVPIQL--CELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN 328
            +  + G  P  L       L +L+L N +         +     +              
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI----GNLTRIQTLNLSHNNLT---GSIPS 381
                Q +V   LS LDLS N  +G   L           +Q L L +  +    G   +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 382 TFSNLKYVESLDLSNNKLNGKIPHQL-VELKTLEVFSVAYNNLS 424
             +    ++ LDLS+N L              L   ++++  L 
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 34/236 (14%)

Query: 2   LSLVNDSLGGPFRLPIH--SHKRLGMLDISNNNFRG---HIPVEIADVLPSLYAFNNSMN 56
           L+L N  + G    P+   +   L +L++ N ++      +      + P L   + +  
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 57  ALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAV---GCVNLRFLALSNNNLQGHMFS 113
                          L  LDLS+N   GE     A+       L+ LAL N  ++     
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME----- 214

Query: 114 RNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQCI 172
                              G      +    L+GL L++NSL            ++L  +
Sbjct: 215 ----------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 173 IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228
            +    L+    V       L +LD+S N +    PS      +  + L  N    
Sbjct: 259 NLSFTGLKQ---VPKGLPAKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 35/163 (21%), Positives = 46/163 (28%), Gaps = 11/163 (6%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADV------LPSLYAFNNS 54
            LS+            +     L  LD+S+N   G   +  A        L  L   N  
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 55  MNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSR 114
           M    G   +       LQ LDLS+N L              L  L LS   L      +
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPK 270

Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG 157
                 L  L L  +R     P    +   +  L L  N    
Sbjct: 271 GL-PAKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.5 bits (220), Expect = 9e-20
 Identities = 55/267 (20%), Positives = 86/267 (32%), Gaps = 56/267 (20%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDL 192
           +IP +L    S + L L+ N L         +   LQ + +    ++  I    +  L  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           L  L ++ N I  SL                         G F   SSL  L      L 
Sbjct: 78  LSTLILTGNPIQ-SLAL-----------------------GAFSGLSSLQKLVAVETNLA 113

Query: 253 GSISDWV-DGLSQLSHLILGHNNL-EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310
            S+ ++    L  L  L + HN +   ++P     L  L+ LDLS+N +     +     
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNL 370
                                    ++  L   LDLS N +   I        R++ L L
Sbjct: 173 H------------------------QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELAL 207

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNN 397
             N L       F  L  ++ + L  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 13/195 (6%)

Query: 63  PSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLT 119
             SF +   LQ LDLS   +   I +       +L  L L+ N +Q      FS    L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS---GLS 100

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNH 178
           +L+ L    +         +    +L+ L + +N + S K+P +  NLT L+ + + +N 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 179 LEGPIPVEFCQLDLLQI----LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 234
           ++     +   L  + +    LD+S N ++   P  F  + +K++ L  N L   +  G 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

Query: 235 FFNCSSLVTLDLSYN 249
           F   +SL  + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 45/198 (22%), Positives = 66/198 (33%), Gaps = 38/198 (19%)

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN 297
            S   LDLS+N L   +  +      +L  L L    ++         L+ L  L L+ N
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 298 NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPL 357
            +       F                              LS L  L      L      
Sbjct: 87  PIQSLALGAFSG----------------------------LSSLQKLVAVETNLASLENF 118

Query: 358 QIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKYVESLDLSNNKLNGKIPHQ----LVELK 411
            IG+L  ++ LN++HN +  S      FSNL  +E LDLS+NK+   I       L ++ 
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176

Query: 412 TLEVFSVAYNNLSGEIPE 429
            L +      N    I  
Sbjct: 177 LLNLSLDLSLNPMNFIQP 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 88.7 bits (220), Expect = 2e-19
 Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 52  NNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM 111
            + +  +   +P +         L      L   I +    G  +L  + +S N++   +
Sbjct: 18  ESKVTEIPSDLPRN------AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 112 FSRNF-NLTNLKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 169
            +  F NL  L  +++E +  +  I  ++     +L+ L ++N  +         +  + 
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130

Query: 170 QCIIMP-NNHLEGPIPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 227
             + +  N ++       F  L     IL ++ N I     S F+   + +++LS N   
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190

Query: 228 GQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN 287
            +L    F   S  V LD+S  R++ S+  +  GL  L  L         ++P  L +L 
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV 246

Query: 288 QLQLLDLSNN 297
            L    L+  
Sbjct: 247 ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 64/388 (16%), Positives = 114/388 (29%), Gaps = 75/388 (19%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFNLTNLKWLQLEGSRF 131
                + +T EIP  L     N   L      L   Q   FS      +L+ +++  +  
Sbjct: 14  FLCQESKVT-EIPSDLPR---NAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDV 66

Query: 132 VGEIP-QSLSKCSSLEGLYL-NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQ 189
           +  I     S    L  + +   N+L    P    NL  LQ +++ N  ++    V    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 190 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS-LVTLDLSY 248
                +LDI DN    ++                          +F   S   V L L+ 
Sbjct: 127 SLQKVLLDIQDNINIHTIER-----------------------NSFVGLSFESVILWLNK 163

Query: 249 NRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307
           N +   I +   +G       +  +NNLE          +   +LD+S   +H       
Sbjct: 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367
           +N                            L  L        K +  +      L  +  
Sbjct: 223 EN----------------------------LKKLRARSTYNLKKLPTL----EKLVALME 250

Query: 368 LNLSHNNLTGSIPSTFSN-LKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426
            +L++     S    F+N  + +  L    NK   +     +     +  S+A +N S  
Sbjct: 251 ASLTYP----SHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSY 306

Query: 427 IPEWTAQFATFNESSYEGNTFLCGLPLP 454
              +   +  F+         +   P P
Sbjct: 307 SRGFDMTYTEFDYDLCNEVVDVTCSPKP 334

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 50/273 (18%), Positives = 92/273 (33%), Gaps = 48/273 (17%)

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              +  CS+        + ++ +IP  L        +      L       F     L+ 
Sbjct: 3   HHRICHCSNRV-FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 196 LDISDNNISGSLPS-CFHPL-SIKQVHLSK-NMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           ++IS N++   + +  F  L  + ++ + K N L   +    F N  +L  L +S   + 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK 117

Query: 253 GSISDWV-DGLSQLSHLILGHNN----LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307
             + D       Q   L +  N     +E    + L    +  +L L+ N +     S F
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAF 174

Query: 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQ 366
           + T L E                             L+LS N  +  +P  +    +   
Sbjct: 175 NGTQLDE-----------------------------LNLSDNNNLEELPNDVFHGASGPV 205

Query: 367 TLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNK 398
            L++S   +  S+PS    NLK + +    N K
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 49/236 (20%), Positives = 81/236 (34%), Gaps = 38/236 (16%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSN- 79
             L  ++IS N+    I                            F N+  L  + +   
Sbjct: 54  GDLEKIEISQNDVLEVIE------------------------ADVFSNLPKLHEIRIEKA 89

Query: 80  NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSL 139
           N+L   I         NL++L +SN  ++        +      L ++ +  +  I ++ 
Sbjct: 90  NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 140 SK--CSSLEGLYLNNNSLSGKIPRWLGNLTRL-QCIIMPNNHLEGPIPVE-FCQLDLLQI 195
                     L+LN N +  +I     N T+L +  +  NN+LE  +P + F       I
Sbjct: 149 FVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVI 206

Query: 196 LDISDNNISGSLPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
           LDIS   I  SLPS     L      L     +   K  T     +L+   L+Y  
Sbjct: 207 LDISRTRIH-SLPSYGLENLK----KLRARSTYNLKKLPTLEKLVALMEASLTYPS 257

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 1e-17
 Identities = 81/434 (18%), Positives = 130/434 (29%), Gaps = 91/434 (20%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD----GSIPSSFGNMKFLQFLDLSNNH 81
           LDI           E+  +L            L       I S+      L  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 82  LTGE----IPEHLAVGCVNLRFLALSNNNLQ-------GHMFSRNFNLTNLKWLQLEGSR 130
           L       + + L      ++ L+L N  L                    L+ L L  + 
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELHLSDNL 124

Query: 131 FVGEIPQSLSK-----CSSLEGLYLNNNSLSGK----IPRWLGNLTRLQCIIMPNNHLEG 181
                 Q L +        LE L L   SLS      +   L      + + + NN +  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 182 PIPVEFCQL-----DLLQILDISDNNISGS--------LPSCFHPLSIKQVHLSKNMLHG 228
                 CQ        L+ L +    ++          + S     S++++ L  N L  
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK---ASLRELALGSNKLGD 241

Query: 229 Q----LKRGTFFNCSSLVTLDLSYNRLN----GSISDWVDGLSQLSHLILGHNNLEGEVP 280
                L  G     S L TL +    +     G +   +     L  L L  N L  E  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 281 IQLCEL-----NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335
             LCE       QL+ L + + +                          T    ++    
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF-------------------------TAACCSHFSSV 336

Query: 336 -KVLSLLSGLDLSCNKL--IGPIPLQIG---NLTRIQTLNLSHNNLT----GSIPSTFSN 385
                 L  L +S N+L   G   L  G     + ++ L L+  +++     S+ +T   
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 386 LKYVESLDLSNNKL 399
              +  LDLSNN L
Sbjct: 397 NHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 70/404 (17%), Positives = 131/404 (32%), Gaps = 72/404 (17%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ-------GHMFSRNFNLTNLKWL 124
           +Q LD+    L+      L       + + L +  L              N     L  L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---PALAEL 61

Query: 125 QLEGSRFVGEIPQSLSKC-----SSLEGLYLNNNSLSGK----IPRWLGNLTRLQCIIMP 175
            L  +         + +        ++ L L N  L+G     +   L  L  LQ + + 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 176 NNHLEGPIPVEFCQLDL-----LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 230
           +N L        C+  L     L+ L +   ++S    +   PL+        ++L    
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLA--------SVLR--- 167

Query: 231 KRGTFFNCSSLVTLDLSYNRLNGS-ISDWVDGLS----QLSHLILGHNNLEGEVPIQLCE 285
                        L +S N +N + +     GL     QL  L L    +  +    LC 
Sbjct: 168 ------AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 286 L----NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE----KFEFTTKNIAYIYQG-K 336
           +      L+ L L +N L     +      LH   ++R     +   T K    + +  +
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNL-----TRIQTLNLSHNNLTG----SIPSTFSNLK 387
               L  L L+ N+L       +         ++++L +   + T        S  +  +
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 388 YVESLDLSNNKLNGKIPHQLVEL-----KTLEVFSVAYNNLSGE 426
           ++  L +SNN+L      +L +        L V  +A  ++S  
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 65/369 (17%), Positives = 123/369 (33%), Gaps = 82/369 (22%)

Query: 96  NLRFLALSNNNLQGHMFSR-NFNLTNLKWLQLE----GSRFVGEIPQSLSKCSSLEGLYL 150
           +++ L +    L    ++     L   + ++L+          +I  +L    +L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS----GS 206
            +N L       +      Q +  P+                +Q L + +  ++    G 
Sbjct: 64  RSNELGDVGVHCVL-----QGLQTPSCK--------------IQKLSLQNCCLTGAGCGV 104

Query: 207 LPSCFHPL-SIKQVHLSKNMLHGQ----LKRGTFFNCSSLVTLDLSYNRLN----GSISD 257
           L S    L +++++HLS N+L       L  G       L  L L Y  L+      ++ 
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 258 WVDGLSQLSHLILGHNNLEGEVPIQLCEL-----NQLQLLDLSNNNLHGPIPSCFDNTTL 312
            +        L + +N++       LC+       QL+ L L +  +             
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV------------- 211

Query: 313 HEKKQIREKFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKL--IGPIPLQIGNL---TRIQ 366
                       T+ N   +       + L  L L  NKL  +G   L  G L   +R++
Sbjct: 212 ------------TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 367 TLNLSHNNLT----GSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL-----KTLEVFS 417
           TL +    +T    G +       + ++ L L+ N+L  +    L E        LE   
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 418 VAYNNLSGE 426
           V   + +  
Sbjct: 320 VKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 58/337 (17%), Positives = 99/337 (29%), Gaps = 91/337 (27%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPS------LYAFNNS-----MNALDGSIPSSF 66
               RL  L +   +        +A VL +      L   NN      +  L   +    
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD-- 196

Query: 67  GNMKFLQFLDLSNNHLTGEIPEHLAVG---CVNLRFLALSNNNLQGHMF-----SRNFNL 118
            +   L+ L L +  +T +    L        +LR LAL +N L                
Sbjct: 197 -SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 119 TNLKWLQLE----GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL-----TRL 169
           + L+ L +      ++  G++ + L    SL+ L L  N L  +  R L         +L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 170 QCIIMPNNHLEGPIPVEFCQLDL---------LQILDISDNNISGS----------LPSC 210
           + + + +           C             L  L IS+N +  +           P  
Sbjct: 316 ESLWVKSCSFT----AACCS-HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 211 FHPLSIKQVHLSKNMLHGQ--------LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL 262
                ++ + L+   +           L         SL  LDLS N     + D   G+
Sbjct: 371 ----VLRVLWLADCDVSDSSCSSLAATLL-----ANHSLRELDLSNNC----LGD--AGI 415

Query: 263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
            QL    +                  L+ L L +   
Sbjct: 416 LQLVES-VRQPG------------CLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 26/213 (12%)

Query: 239 SSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCEL----NQLQLLD 293
             + +LD+    L+    ++ +  L Q   + L    L       +         L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 294 LSNNNLHGPIPSCFDNTTLHEKKQIRE----KFEFTTKNIAYIYQG-KVLSLLSGLDLSC 348
           L +N L      C          +I++        T      +    + L  L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 349 NKLIGPIPLQI------GNLTRIQTLNLSHNNLT----GSIPSTFSNLKYVESLDLSNNK 398
           N  +G   LQ+          R++ L L + +L+      + S        + L +SNN 
Sbjct: 123 NL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 399 LNGKIPHQLVE-LK----TLEVFSVAYNNLSGE 426
           +N      L + LK     LE   +    ++ +
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 47/213 (22%), Positives = 83/213 (38%), Gaps = 20/213 (9%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN----LQGHMFSRNFNLTNLKWLQLE 127
            Q L L   HL   IP H      N+  + +S +     L+ H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 128 GSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKIP--RWLGNLTRLQCIIMPNNHLEGPIP 184
            +R +  I    L +   L+ L + N  L    P    + +      + + +N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 185 VE-FCQL-DLLQILDISDNNISGSLPSC-FHPLSIKQVHLSKNMLHGQLKRGTFFN-CSS 240
           V  F  L +    L + +N  + S+    F+   +  V+L+KN     + +  F    S 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN 273
              LD+S   +  ++     GL  L  LI  + 
Sbjct: 207 PSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 39/235 (16%)

Query: 193 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            Q L + + ++       F  L  I ++++S ++   QL+  +F+N S +  +++   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 252 NGSISDWV-DGLSQLSHLILGHNNLEGEVP--IQLCELNQLQLLDLSNNNLHGPIPS-CF 307
              I       L  L  L + +  L+   P   ++   +   +L++++N     IP   F
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT 367
                                          +    L L  N     +     N T++  
Sbjct: 152 QGLC---------------------------NETLTLKLYNNG-FTSVQGYAFNGTKLDA 183

Query: 368 LNLSHNNLTGSIPS-TFSNLK-YVESLDLSNNKLN---GKIPHQLVELKTLEVFS 417
           + L+ N     I    F  +      LD+S   +     K    L EL     ++
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 42/264 (15%), Positives = 78/264 (29%), Gaps = 44/264 (16%)

Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
           C   E   +    +  +IP    +   L+   +   HL       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 202 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD-- 257
                L S  F+ L  +  + +        +          L  L +    L     D  
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLT 124

Query: 258 WVDGLSQLSHLILGHNNLEGEVPIQLCE--LNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315
            V        L +  N     +P+   +   N+   L L NN         F+ T L   
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDA- 183

Query: 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI--GNLTRIQTLNLSHN 373
                                       + L+ NK +  I      G  +    L++S  
Sbjct: 184 ----------------------------VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

Query: 374 NLTGSIPS-TFSNLKYVESLDLSN 396
           ++T ++PS    +LK + + +   
Sbjct: 216 SVT-ALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPS-SFGNMKFLQFLDLSNNHLTG 84
           L +   + R  IP      LP++     S++     + S SF N+  +  +++ N     
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 85  EIPEHLAVGCVNLRFLALSNNNLQG-HMFSRNFNLTNLKWLQLEGSRFVGEIPQSL--SK 141
            I          L+FL + N  L+     ++ ++      L++  + ++  IP +     
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

Query: 142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI-IMPNNHLEGPIPVEFCQL-DLLQILDIS 199
           C+    L L NN  +  +  +  N T+L  + +  N +L       F  +     +LD+S
Sbjct: 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 200 DNNISGSLPS-CFHPLS 215
             +++ +LPS     L 
Sbjct: 214 QTSVT-ALPSKGLEHLK 229

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 22  RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIP--SSFGNMKFLQFLDLSN 79
           ++  ++I N     +I  +    LP L         L    P  +   +      L++++
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITD 139

Query: 80  NHLTGEIPEHLAVGCVN-LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS 138
           N     IP +   G  N    L L NN     +    FN T L  + L  ++++  I + 
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 139 L--SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 170
                 S    L ++  S++    + L +L  L 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 338 LSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLS 395
           L  +S + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 396 NNKLNGKIPHQ--LVELKTLEVFSVAYNNLSGEIPE 429
           N  L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 47/173 (27%), Positives = 67/173 (38%), Gaps = 9/173 (5%)

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 202
                L+L+ N L       L   TRL  + +    L   + V    L +L  LD+S N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQ 88

Query: 203 ISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-D 260
           +  SLP     L  +  + +S N L   L  G       L  L L  N L  ++   +  
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 261 GLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDNTTL 312
              +L  L L +NNL  E+P  L   L  L  L L  N+L+      F +  L
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 49/207 (23%), Positives = 71/207 (34%), Gaps = 36/207 (17%)

Query: 193 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
             IL +S+N +     +   P + + Q++L +  L    K         L TLDLS+N+L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQL 89

Query: 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
             S+      L  L+ L +  N L       L  L +LQ L L  N L    P       
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-- 146

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNL 370
                                        L  L L+ N L   +P  +   L  + TL L
Sbjct: 147 --------------------------TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL 179

Query: 371 SHNNLTGSIPSTFSNLKYVESLDLSNN 397
             N+L  +IP  F     +    L  N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 37/204 (18%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
           P     +HLS+N+L       T    + L  L+L    L  +       L  L  L L H
Sbjct: 30  PKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSH 86

Query: 273 NNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI 332
           N L+  +P+    L  L +LD+S N L                                 
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------- 122

Query: 333 YQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVE 390
                L  L  L L  N+L   +P  +     +++ L+L++NNLT  +P+   + L+ ++
Sbjct: 123 -----LGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 391 SLDLSNNKLNGKIPHQLVELKTLE 414
           +L L  N L   IP        L 
Sbjct: 176 TLLLQENSLYT-IPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 14/164 (8%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDL 77
             + RL  L++        + V+    LP L   + S N L  S+P     +  L  LD+
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107

Query: 78  SNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGE 134
           S N LT  +P     G   L+ L L  N L+     + +       L+ L L  +    E
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNNLT-E 162

Query: 135 IPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177
           +P  L +   +L+ L L  NSL   IP+       L    +  N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 41/195 (21%), Positives = 68/195 (34%), Gaps = 21/195 (10%)

Query: 37  IPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96
           +P ++      L+   N +        ++      L  L+L    LT ++   +      
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFS---LATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPV 78

Query: 97  LRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEGSRFVGEIPQSLS-----KCSSLEGLYL 150
           L  L LS+N LQ          L  L  L +  +R       SL          L+ LYL
Sbjct: 79  LGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYL 131

Query: 151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPS 209
             N L    P  L    +L+ + + NN+L   +P      L+ L  L + +N++      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 210 CFHPLSIKQVHLSKN 224
            F    +    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 1e-16
 Identities = 50/305 (16%), Positives = 99/305 (32%), Gaps = 32/305 (10%)

Query: 145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204
           +      +  +    P             +    +   +     +L+ +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 205 GSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYNRLNGSISDWVDGLS 263
            S+    +  ++ ++ L+ N    +L       N  +L  L L  N++   +S  +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 264 QLSHLILGHNN---LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
           +L  L L HN    + G     L  L QL+ L L NN +        D T L    ++  
Sbjct: 110 KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKIT-------DITVLSRLTKLDT 157

Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP 380
                   I+ I     L+ L  L LS N +     L    L  +  L L          
Sbjct: 158 -LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPI 214

Query: 381 STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 440
           +  SNL    ++  ++  L    P  + +    E  +V ++            +      
Sbjct: 215 NHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIG 272

Query: 441 SYEGN 445
             +  
Sbjct: 273 KAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 7e-16
 Identities = 44/284 (15%), Positives = 104/284 (36%), Gaps = 21/284 (7%)

Query: 68  NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE 127
                   +L    +T  + ++      ++  +  +N++++         L N+  L L 
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLN 73

Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
           G++ + +I + L+   +L  L+L+ N +   +   L +L +L+ + + +N +     +  
Sbjct: 74  GNK-LTDI-KPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGISDINGLV- 128

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDL 246
             L  L+ L + +N I+  +        +  + L  N    Q+         + L  L L
Sbjct: 129 -HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYL 182

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC 306
           S N ++  +   + GL  L  L L       +       L     +  ++ +L  P    
Sbjct: 183 SKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
             +   +EK  ++      T  +++I+   V    +        
Sbjct: 241 --DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 3e-15
 Identities = 64/422 (15%), Positives = 127/422 (30%), Gaps = 45/422 (10%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
            ++   +    +     + +  + A N+ + ++ G        +  +  L L+ N LT +
Sbjct: 26  DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLNGNKLT-D 79

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
           I + L     NL +L L  N +     S   +L  LK L LE +  + +I   L     L
Sbjct: 80  I-KPLT-NLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQL 133

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           E LYL NN ++      L  LT+L  + + +N +   +P     L  LQ L +S N+I  
Sbjct: 134 ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-- 187

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQL 265
              S    L+                        +L  L+L          +    L   
Sbjct: 188 ---SDLRALA---------------------GLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 266 SHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFT 325
           + +     +L     I   +    +  ++  +         F         + + +F   
Sbjct: 224 NTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGR 281

Query: 326 TKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN 385
                         +   +  +  +    I        +       +    G     F+ 
Sbjct: 282 VTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNT 341

Query: 386 LKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 445
             Y+   D +   +      +     T  V  +  N    ++P           +S+   
Sbjct: 342 -DYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLASHRCK 400

Query: 446 TF 447
             
Sbjct: 401 AL 402

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 14/189 (7%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           P+ + K LG L +  N  +    ++    L SL   +N ++ ++G       ++  L+ L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-----LVHLPQLESL 136

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            L NN +T      L+     L  L+L +N +          LT L+ L L  +  + ++
Sbjct: 137 YLGNNKIT--DITVLS-RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL 190

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
            ++L+   +L+ L L +     K      NL     +   +  L  P  +        + 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG--DYEK 247

Query: 196 LDISDNNIS 204
            ++  +   
Sbjct: 248 PNVKWHLPE 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 49/287 (17%), Positives = 99/287 (34%), Gaps = 26/287 (9%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
            L N   +    S     +    +    +  L      ++      +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N +    P++   L  +  L++S N +  ++ +     SIK + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
             S+L  L L  N++  +IS  + GL+ L +L +G+  +    P+    L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N +   I        L        +       I+ +      S L  + L+   +     
Sbjct: 183 NKISD-ISPLASLPNL-------IEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 357 LQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKYVESLDLSNNKLNGK 402
               NL      N+        I P+T S+     S +L+ N  +  
Sbjct: 235 FYNNNLV---VPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 50/281 (17%)

Query: 150 LNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 209
               +++   P     L     I    +++   +      LD +  L      ++ ++  
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG 58

Query: 210 CFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHL 268
             +  ++  + L  N    Q+       N + +  L+LS N L  ++S  + GL  +  L
Sbjct: 59  VQYLNNLIGLELKDN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTL 112

Query: 269 ILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN 328
            L    +    P  L  L+ LQ+L L  N +                            N
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQI---------------------------TN 143

Query: 329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY 388
           I+ +     L+ L  L +   ++    PL   NL+++ TL    N ++  I    ++L  
Sbjct: 144 ISPL---AGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS-DISP-LASLPN 196

Query: 389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
           +  + L NN+++   P  L     L + ++    ++ +   
Sbjct: 197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 39/246 (15%), Positives = 92/246 (37%), Gaps = 21/246 (8%)

Query: 68  NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE 127
            +     +    +++T  + +        +  L+     +          L NL  L+L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELK 71

Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
            ++ + ++   L   + +  L L+ N L       +  L  ++ + + +  +    P   
Sbjct: 72  DNQ-ITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--L 125

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDL 246
             L  LQ+L +  N I+ ++       +++ + +       Q+   T   N S L TL  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLKA 180

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC 306
             N+++  IS  +  L  L  + L +N +    P+     + L ++ L+N  +       
Sbjct: 181 DDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFY 236

Query: 307 FDNTTL 312
            +N  +
Sbjct: 237 NNNLVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 46/275 (16%)

Query: 139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI 198
               ++   +    ++++  +     +L  +  +      +     V+   L+ L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
            DN I+  L    +   I ++ LS N L             S+ TLDL+  ++   ++  
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT-DVTP- 124

Query: 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318
           + GLS L  L L  N +    P  L  L  LQ L + N  +                   
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV------------------- 163

Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
                    ++  +     LS L+ L    NK+    PL   +L  +  ++L +N ++  
Sbjct: 164 --------SDLTPL---ANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDV 210

Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
            P   +N   +  + L+N  +  +       L   
Sbjct: 211 SP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 52/278 (18%), Positives = 102/278 (36%), Gaps = 44/278 (15%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           +    +N    +     D + +L AF   +  ++G        +  L  L+L +N +T +
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQIT-D 77

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
           +          +  L LS N L+    S    L ++K L L  ++ + ++   L+  S+L
Sbjct: 78  LAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNL 131

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           + LYL+ N ++   P  L  LT LQ + + N  +    P+    L  L  L   DN IS 
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKIS- 186

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQL 265
            +                             +  +L+ + L  N+++  +S  +   S L
Sbjct: 187 DISP-------------------------LASLPNLIEVHLKNNQIS-DVSP-LANTSNL 219

Query: 266 SHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
             + L +  +  +       L    ++   +     P 
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 46/237 (19%), Positives = 99/237 (41%), Gaps = 18/237 (7%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            +     L  L++ +N      P++    +  L    N +  +     S+   ++ ++ L
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-----SAIAGLQSIKTL 112

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
           DL++  +T   P     G  NL+ L L  N +     S    LTNL++L +  ++ V ++
Sbjct: 113 DLTSTQITDVTPLA---GLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQ-VSDL 166

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              L+  S L  L  ++N +S   P  L +L  L  + + NN +    P+       L I
Sbjct: 167 T-PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFI 221

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           + +++  I  +    F+  ++   ++ K      +   T  +  +  + +L++N  +
Sbjct: 222 VTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 57/367 (15%), Positives = 110/367 (29%), Gaps = 96/367 (26%)

Query: 72  LQFLDLSNNHLTGEIPEHLA---VGCVNLRFLALSNNNLQ-------GHMFSRNFNLTNL 121
           ++   L  + +T E  + +    +   +++ + LS N +            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 122 KWLQLEGSRFVGEIP-------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIM 174
           ++  +   R   EIP       Q+L KC  L  + L++N+        L +         
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP-- 123

Query: 175 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 234
                             L+ L + +N +    P     ++          L        
Sbjct: 124 ------------------LEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 235 FFNCSSLVTLDLSYNRL-NGSISDWVDGLSQ---LSHLILGHNNLEGE-VPIQLCEL--- 286
             N   L ++    NRL NGS+ +W         L  + +  N +  E +   L E    
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 287 -NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG-KVLSLLSGL 344
             +L++LDL +N                          FT    + +    K    L  L
Sbjct: 215 CQELKVLDLQDNT-------------------------FTHLGSSALAIALKSWPNLREL 249

Query: 345 DLSCNKLIGPI-------PLQIGNLTRIQTLNLSHNNLTGS-----IPSTFSNLKYVESL 392
            L+    +                   +QTL L +N +               +  +  L
Sbjct: 250 GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 393 DLSNNKL 399
           +L+ N+ 
Sbjct: 309 ELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 49/366 (13%), Positives = 105/366 (28%), Gaps = 95/366 (25%)

Query: 1   TLSLVNDSLGG----PFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLP------SLYA 50
             SL  D++           +     +  + +S N         +++ +           
Sbjct: 8   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 67

Query: 51  FNNSMNALDGSIP-------SSFGNMKFLQFLDLSNNHLTGEIPEHLAVG---CVNLRFL 100
            +     +   IP        +      L  + LS+N       E L         L  L
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127

Query: 101 ALSNNNL-------------QGHMFSRNFNLTNLKWLQL-------EGSRFVGEIPQSLS 140
            L NN L             +  +  +  N   L+ +            +   +   +  
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---TFQ 184

Query: 141 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
               L  + +  N +  +     G    L   +     L+              +LD+ D
Sbjct: 185 SHRLLHTVKMVQNGIRPE-----GIEHLLLEGLAYCQELK--------------VLDLQD 225

Query: 201 NNI--------SGSLPSCFHPLSIKQVHLSKNMLHGQ--------LKRGTFFNCSSLVTL 244
           N          + +L S     +++++ L+  +L  +          +        L TL
Sbjct: 226 NTFTHLGSSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTL 279

Query: 245 DLSYNRLNG----SISDWV-DGLSQLSHLILGHNNL--EGEVPIQLCEL----NQLQLLD 293
            L YN +      ++   + + +  L  L L  N    E +V  ++ E+     + +L +
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339

Query: 294 LSNNNL 299
           L +   
Sbjct: 340 LDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 44/218 (20%)

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGL----------SQLSHLILGHNNLEGEVPIQLCEL 286
           +   L   + S         +  + L           +L  + L  N         L + 
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 287 ----NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS 342
                 L+ L L NN L GP         L E    ++                    L 
Sbjct: 118 LSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPP--------------LR 162

Query: 343 GLDLSCNKLIGPIPLQ-----IGNLTRIQTLNLSHNNLT-----GSIPSTFSNLKYVESL 392
            +    N+ +    ++       +   + T+ +  N +        +    +  + ++ L
Sbjct: 163 SIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 393 DLSNNKLNGK----IPHQLVELKTLEVFSVAYNNLSGE 426
           DL +N         +   L     L    +    LS  
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 4e-14
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 45  LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSN 104
           L  +   N ++  L G           ++ L ++N H T      ++ G  NL  L +  
Sbjct: 46  LTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 105 NNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 164
            ++          LT+L  L +  S     I   ++    +  + L+ N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 165 NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 59/218 (27%)

Query: 184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243
            +   Q++ L  + +++ N++           +    +                  ++  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLT--GIE--------------YAHNIKD 70

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
           L ++      + +  + GLS L  L +   ++  +    L  L  L LLD+S++     I
Sbjct: 71  LTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 304 PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT 363
            +  +                             L  ++ +DLS N  I  I   +  L 
Sbjct: 129 LTKINT----------------------------LPKVNSIDLSYNGAITDIM-PLKTLP 159

Query: 364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG 401
            +++LN+  + +         +   +  L   +  + G
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 31/183 (16%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
            + +L ++ L     V ++   +    +++ L +NN   +   P  +  L+ L+ + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
             +          L  L +LDIS +    S+ +  +                        
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------ 133

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
               + ++DLSYN     I   +  L +L  L +  + +     I+  +  +L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 297 NNL 299
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 65  SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124
           +   M  L ++ L+N ++T ++   +     N++ L ++N +     ++    L+NL+ L
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATN--YNPISGLSNLERL 93

Query: 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP 184
           ++ G     +   +LS  +SL  L +++++    I   +  L ++  I +  N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 185 VEFCQLDLLQILDISDNNIS 204
                L  L+ L+I  + + 
Sbjct: 154 -PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 35/168 (20%)

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
                  + +LG ++      I   ++N L  + L+N N+                    
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT------------------- 57

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI 379
                    I Y         +  L ++        P+    L+ ++ L +   ++T   
Sbjct: 58  -----DLTGIEY------AHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDK 104

Query: 380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEI 427
               S L  +  LD+S++  +  I  ++  L  +    ++YN    +I
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 328 NIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 387
           + A I + + ++ L+ + L+   +     ++      I+ L +++ + T    +  S L 
Sbjct: 34  STANITEAQ-MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATNY--NPISGLS 88

Query: 388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
            +E L +    +       L  L +L +  ++++     I  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 1   TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG 60
            L ++   +       +     L +LDIS++     I  +I   LP + + + S N    
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT 150

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIP-EHLAVGCVNLRFLALSNNNLQG 109
            I      +  L+ L++  + +      E        L  L   +  + G
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRGIEDF----PKLNQLYAFSQTIGG 195

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 34/208 (16%)

Query: 193 LQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            + LD+  N +S      FH L+ ++ ++L+ N L   L  G F    +L TL ++ N+L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 252 NGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDN 309
             ++   V D L  L+ L L  N L+  +P ++ + L +L  L L  N L       FD 
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                                       L+ L  L L  N+L          LT ++TL 
Sbjct: 156 ----------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 370 LSHNNLTGSIPSTFSNLKYVESLDLSNN 397
           L +N L       F +L+ ++ L L  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLLQILDISDN 201
           +  + L L +N LS    +    LT+L+ + + +N L+  +P   F +L  L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 202 NISGSLPSC-FHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
            +  +LP   F  L ++ ++ L +N L   L    F + + L  L L YN L  S+   V
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 260 -DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
            D L+ L  L L +N L+        +L +L+ L L NN L       FD+  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 9e-11
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 33/201 (16%)

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNL 118
           IP+        + LDL +N L+  +P         LR L L++N LQ     +F     L
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---L 84

Query: 119 TNLKWLQLEGSRFVGEIPQSL-----SKCSSLEGLYLNNN---SLSGKIPRWLGNLTRLQ 170
            NL+ L +  ++      Q+L      +  +L  L L+ N   SL  ++   L  LT L 
Sbjct: 85  KNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139

Query: 171 CIIMPNNHLEGPIPVE-FCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHG 228
              +  N L+  +P   F +L  L+ L + +N +       F  L+ +K + L  N L  
Sbjct: 140 ---LGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK- 194

Query: 229 QLKRGTFFNCSSLVTLDLSYN 249
           ++  G F +   L  L L  N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 37/191 (19%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 271
           P   K++ L  N L   L    F   + L  L L+ N+L  ++   +   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 272 HNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIA 330
            N L+  +PI + + L  L  L L  N L    P  FD+                     
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 331 YIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKY 388
                  L+ L+ L L  N+L   +P  +   LT ++ L L +N L   +P   F  L  
Sbjct: 132 -------LTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTE 182

Query: 389 VESLDLSNNKL 399
           +++L L NN+L
Sbjct: 183 LKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNNHLTG 84
           LD+ +N     +P +    L  L     + N L  ++P+  F  +K L+ L +++N L  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 85  EIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS- 140
            +P  +    VNL  L L  N L+     +F     LT L +L L  +       QSL  
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---LTKLTYLSLGYNEL-----QSLPK 150

Query: 141 ----KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL 196
               K +SL+ L L NN L          LT L+ + + NN L+      F  L+ L++L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 197 DISDN 201
            + +N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 10/164 (6%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLD 76
           H   +L +L +++N  +  +P  I   L +L     + N L  ++P   F  +  L  L 
Sbjct: 58  HRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVG 133
           L  N L   +P  +      L +L+L  N LQ     +F +   LT+LK L+L  ++   
Sbjct: 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK---LTSLKELRLYNNQLKR 171

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN 177
               +  K + L+ L L+NN L         +L +L+ + +  N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 45/199 (22%)

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLSN 296
           +    LDL  N+L+ S+       L++L  L L  N L+  +P  +  EL  L+ L +++
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N L       FD                             L  L+ L L  N+L   +P
Sbjct: 95  NKLQALPIGVFDQ----------------------------LVNLAELRLDRNQLKS-LP 125

Query: 357 LQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIP----HQLVEL 410
            ++  +LT++  L+L +N L  S+P   F  L  ++ L L NN+L  ++P     +L EL
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTEL 183

Query: 411 KTLEVFSVAYNNLSGEIPE 429
           KTL++     NN    +PE
Sbjct: 184 KTLKL----DNNQLKRVPE 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 36/193 (18%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHLEGPIPVE-FCQLD 191
            +PQSL   S    L L++N+LS     W    LT L  +++ +NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            L+ LD+S N++  +L                           F +  +L  L L  N +
Sbjct: 89  NLRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHI 124

Query: 252 NGSISDWV-DGLSQLSHLILGHNNLEGEVP----IQLCELNQLQLLDLSNNNLHGPIPSC 306
              +     + ++QL  L L  N +    P        +L +L LLDLS+N L     + 
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 307 FDNTTLHEKKQIR 319
                   K  + 
Sbjct: 183 LQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 36/190 (18%)

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSN 296
           S    LDLS+N L+   ++W    L+ L  L+L HN+L   +  +    +  L+ LDLS+
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N+LH      F +                            L  L  L L  N  I  + 
Sbjct: 98  NHLHTLDEFLFSD----------------------------LQALEVLLLYNNH-IVVVD 128

Query: 357 LQI-GNLTRIQTLNLSHNNLTGSIPSTFSN---LKYVESLDLSNNKLNGKIPHQLVELKT 412
                ++ ++Q L LS N ++        +   L  +  LDLS+NKL       L +L  
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 413 LEVFSVAYNN 422
                +  +N
Sbjct: 189 WVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEG 128
              LDLS+N+L+    E       NL  L LS+N+L       F     + NL++L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 129 SRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-- 186
           +          S   +LE L L NN +         ++ +LQ + +  N +    PVE  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 187 --FCQLDLLQILDISDNNISGSLPSCFHPLS---IKQVHLSKNMLH 227
               +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 7e-09
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 39/188 (20%)

Query: 243 TLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHG 301
            L  S  +L  ++   +   S  + L L HNNL           L  L  L LS+N+L+ 
Sbjct: 22  ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN 361
                F                              +  L  LDLS N L         +
Sbjct: 79  ISSEAFVP----------------------------VPNLRYLDLSSNHLHTLDEFLFSD 110

Query: 362 LTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQ----LVELKTLEVF 416
           L  ++ L L +N++   +    F ++  ++ L LS N+++ + P +      +L  L + 
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168

Query: 417 SVAYNNLS 424
            ++ N L 
Sbjct: 169 DLSSNKLK 176

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 26/278 (9%)

Query: 148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 207
                  +                  +    +   +     +L+ +  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 208 PSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSISDWVDGLSQLS 266
               +  ++ ++ L+ N    +L       N  +L  L L  N++   +S  +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 267 HLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTT 326
            L L HN +     +    L QL+ L L NN +        D T L    ++        
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKIT-------DITVLSRLTKLDT-LSLED 165

Query: 327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 386
             I+ I     L+ L  L LS N +     L    L  +  L L          +  SNL
Sbjct: 166 NQISDIVPLAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNL 223

Query: 387 KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
               ++  ++  L    P  + +    E  +V ++   
Sbjct: 224 VVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 46/285 (16%), Positives = 96/285 (33%), Gaps = 44/285 (15%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
              +       ++   +    +     + +  + A N+ + ++ G        +  +  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 73

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            L+ N LT +I + LA    NL +L L  N ++                 L         
Sbjct: 74  FLNGNKLT-DI-KPLA-NLKNLGWLFLDENKVK----------------DLSS------- 107

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              L     L+ L L +N +S  I   L +L +L+ + + NN +     +   +L  L  
Sbjct: 108 ---LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDT 160

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
           L + DN IS  +        ++ ++LSKN +             +L  L+L         
Sbjct: 161 LSLEDNQIS-DIVPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKP 216

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
            +    L   + +     +L    P  + +    +  ++  +   
Sbjct: 217 INHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.2 bits (166), Expect = 3e-12
 Identities = 31/229 (13%), Positives = 67/229 (29%), Gaps = 13/229 (5%)

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
               ++ +           S  Q          +           L   +LS  +    +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 256 SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK 315
              ++   +L  L   +      + + +  L+ L     +                +   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-------KAVDPM 417

Query: 316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL 375
           +        +   +         + +  L L+   L     L+   L  +  L+LSHN L
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRL 475

Query: 376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
             ++P   + L+ +E L  S+N L   +   +  L  L+   +  N L 
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 49/332 (14%), Positives = 94/332 (28%), Gaps = 63/332 (18%)

Query: 48  LYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV--NLRFLALSNN 105
           L   + +  +++   P        +   DL    L  ++P+H        +         
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334

Query: 106 NLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 165
             +   + R+       +           +   L  C  L+ L   N      I   +  
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394

Query: 166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 225
           L  L        +           L  +  +  +  +   S     + +   +    +  
Sbjct: 395 LDPLLYEKETLQYFS--------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR-- 444

Query: 226 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE 285
                             L L++  L   +   ++ L  ++HL L HN L   +P  L  
Sbjct: 445 -----------------VLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484

Query: 286 LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLD 345
           L  L++L  S+N L                           +N+  +     L  L  L 
Sbjct: 485 LRCLEVLQASDNAL---------------------------ENVDGVAN---LPRLQELL 514

Query: 346 LSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLT 376
           L  N+L        + +  R+  LNL  N+L 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 13  FRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFL 72
             +    +  + +L +++ +      +E   ++  L   +N +     ++P +   ++ L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCL 488

Query: 73  QFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLKWLQLEG 128
           + L  S+N L   +   +A     L+ L L NN LQ     +   +   L  L L+G
Sbjct: 489 EVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 61/328 (18%), Positives = 109/328 (33%), Gaps = 66/328 (20%)

Query: 68  NMKFLQFLDLSNNHLTGE----IPEHLAVGCVNLRFLALSNNNLQGH--------MFSRN 115
               +  L+LS N L  +    + + LA    N+  L LS N L           + +  
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 116 FNLT--NLKWLQLEGSRFVGEIPQSLSKC-SSLEGLYLNNNSLSGKIPRWLGNLTRLQCI 172
           F +T  +L W     S+   E  Q+ S   +S+  L L  N L  K    L      Q +
Sbjct: 109 FTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-----QIL 162

Query: 173 IMPNNHLEGPIPVEFCQLDLLQILDISDNNI--------SGSLPSCFHPLSIKQVHLSKN 224
                ++                L++  NN+        +  L S   P S+  + LS N
Sbjct: 163 AAIPANV--------------NSLNLRGNNLASKNCAELAKFLASI--PASVTSLDLSAN 206

Query: 225 MLHGQ----LKRGTFFNCSSLVTLDLSYNRLNGS----ISDWVDGLSQLSHLILGHNNLE 276
           +L  +    L        + +V+L+L  N L+G     +    D L  L  + L ++ ++
Sbjct: 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

Query: 277 GEVPIQ-------LCELNQLQLLDLSNNNLHGPIPSCF------DNTTLHEKKQIREKFE 323
                Q          + ++ L+D +   +H              +        + +   
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 324 FTTKNIAYIYQGKVLSLLSGLDLSCNKL 351
           F  K+   I    +   L     +C  L
Sbjct: 327 FAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 58/347 (16%), Positives = 107/347 (30%), Gaps = 89/347 (25%)

Query: 120 NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN-LTRLQCIIMPNNH 178
           N K     GS  V E     S    +  L L+ N+L       L                
Sbjct: 2   NYKLTLHPGSNPVEEF---TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA------- 51

Query: 179 LEGPIPVEFCQLDLLQILDISDNNISGS--------LPSCFHPLSIKQVHLSKNMLHGQ- 229
                         +  L++S N++           L +   P ++  ++LS N L  + 
Sbjct: 52  -------------SVTSLNLSGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKS 96

Query: 230 ---LKRGTFFNCSSLVTLDLSYNRL-NGSISDWVDGL----SQLSHLILGHNNLEGEVPI 281
              L +       ++  LDL +N   + S S++        + ++ L L  N+L  +   
Sbjct: 97  SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156

Query: 282 QLCEL-----NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGK 336
           +L ++       +  L+L  NNL                             +A      
Sbjct: 157 ELIQILAAIPANVNSLNLRGNNLA----------------------SKNCAELAKFLASI 194

Query: 337 VLSLLSGLDLSCNKLIGPIPLQI------GNLTRIQTLNLSHNNLTGS----IPSTFSNL 386
             S+ S LDLS N  +G                 + +LNL  N L G     +     +L
Sbjct: 195 PASVTS-LDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 387 KYVESLDLSNNKLNGKIPHQLVEL-------KTLEVFSVAYNNLSGE 426
           K+++++ L  + +      Q   L       + + +       +   
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 59/271 (21%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDL 77
           ++   +  L++S N+       E+  +L +      +                 +  L+L
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAA----IPAN----------------VTSLNL 87

Query: 78  SNNHLTGE----IPEHLAVGCVNLRFLALSNNNLQ-------GHMFSRNFNLTNLKWLQL 126
           S N L+ +    + + LA     +  L L  N+            FS      ++  L L
Sbjct: 88  SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP--ASITSLNL 145

Query: 127 EGSRF----VGEIPQSLSKC-SSLEGLYLNNNSLSGKIPRWLGNL-----TRLQCIIMPN 176
            G+        E+ Q L+   +++  L L  N+L+ K    L          +  + +  
Sbjct: 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205

Query: 177 NHLEGPIPVEFCQL-----DLLQILDISDNNISGS----LPSCFHPL-SIKQVHLSKNML 226
           N L      E   +     + +  L++  N + G     L      L  ++ V+L  +++
Sbjct: 206 NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

Query: 227 HGQLKRG------TFFNCSSLVTLDLSYNRL 251
               K         F N   ++ +D +   +
Sbjct: 266 KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDL 192
           EIP +L    ++  + L  N++    P       +L+ I + NN +   +  + F  L  
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 193 LQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N+
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 251 LNGSISDWVDGLSQLSHLILGHN 273
           L          L  +  + L  N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 34/162 (20%)

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSN 296
            ++  + L  N +   I         +L  + L +N +  E+     + L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N +     S F+                             L  L  L L+ NK+   + 
Sbjct: 90  NKITELPKSLFEG----------------------------LFSLQLLLLNANKI-NCLR 120

Query: 357 LQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
           +    +L  +  L+L  N L      TFS L+ ++++ L+ N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 36  HIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV 95
            IP  + + +  +    N++  +    P +F   K L+ +DLSNN ++ E+      G  
Sbjct: 25  EIPTNLPETITEIRLEQNTIKVIP---PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLR 80

Query: 96  NLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNN 152
           +L  L L  N +      +F     L +L+ L L  ++       +     +L  L L +
Sbjct: 81  SLNSLVLYGNKITELPKSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 153 NSLSGKIPRWLGNLTRLQCIIMPNN 177
           N L          L  +Q + +  N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 194 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
             + +  N I    P  F P   ++++ LS N +  +L    F    SL +L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 253 GSISDWV-DGLSQLSHLILGHNNLEGEVPIQL-CELNQLQLLDLSNNNLHGPIPSCFDN 309
             +   + +GL  L  L+L  N +   + +    +L+ L LL L +N L       F  
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 363 TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP----HQLVELKTLEVFSV 418
             I  + L  N +    P  FS  K +  +DLSNN+++ ++       L  L +L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 419 AYNNLS 424
             N ++
Sbjct: 88  YGNKIT 93

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 51/253 (20%)

Query: 150 LNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS 209
                ++   P     L       +    +   +  +  +L  +Q  +  ++NI  SL  
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAG 58

Query: 210 CFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSISDWVDGLS--QLS 266
                ++K++HLS N    Q+   +   + + L  L ++ NR    + + ++G+    LS
Sbjct: 59  MQFFTNLKELHLSHN----QISDLSPLKDLTKLEELSVNRNR----LKN-LNGIPSACLS 109

Query: 267 HLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTT 326
            L L +N L       L  L  L++L + NN                             
Sbjct: 110 RLFLDNNELRDTDS--LIHLKNLEILSIRNNK---------------------------- 139

Query: 327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL 386
             +  I     LS L  LDL  N++     L    L ++  ++L+              L
Sbjct: 140 --LKSIVMLGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPEL 195

Query: 387 KYVESLDLSNNKL 399
               ++   + + 
Sbjct: 196 YITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 44/238 (18%)

Query: 64  SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKW 123
            S   +  +Q  +  N+++   +   +     NL+ L LS+N +     S   +LT L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQ-SL-AGMQ-FFTNLKELHLSHNQI--SDLSPLKDLTKLEE 89

Query: 124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI 183
           L +  +R +  +  +    + L  L+L+NN L       L +L  L+ + + NN L+  +
Sbjct: 90  LSVNRNR-LKNL--NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV 144

Query: 184 PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 243
            +    L  L++LD+  N I     +    L+                         +  
Sbjct: 145 MLG--FLSKLEVLDLHGNEI-----TNTGGLT---------------------RLKKVNW 176

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEV--PIQLCELNQLQLLDLSNNNL 299
           +DL+  +    +++ V    +L        + +G    P  +          +     
Sbjct: 177 IDLTGQKC---VNEPVKYQPELYITNT-VKDPDGRWISPYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 39/166 (23%)

Query: 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI 318
             GL+      LG  ++   V  +  EL+ +Q  +  N+N+                   
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ------------------ 54

Query: 319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS 378
                 +   + +       + L  L LS N++    PL+  +LT+++ L+++ N L   
Sbjct: 55  ------SLAGMQF------FTNLKELHLSHNQISDLSPLK--DLTKLEELSVNRNRLKNL 100

Query: 379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
                + L     L L NN+L       L+ LK LE+ S+  N L 
Sbjct: 101 NGIPSACLSR---LFLDNNELR-DTDS-LIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 26/188 (13%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            +     L  L +S+N      P++    L  L    N +  L+G           L  L
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG------IPSACLSRL 111

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            L NN L     + L     NL  L++ NN L+         L+ L+ L L G+  +   
Sbjct: 112 FLDNNELRD--TDSLI-HLKNLEILSIRNNKLK--SIVMLGFLSKLEVLDLHGNE-ITNT 165

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
              L++   +  + L       +  ++   L     +  P+                +  
Sbjct: 166 G-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG-------------RWISP 211

Query: 196 LDISDNNI 203
             IS+   
Sbjct: 212 YYISNGGS 219

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHLEGPIPVEFCQLDL 192
           +    L    +L  LY+ N      +    L  L  L+ + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 227
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 6e-08
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 338 LSLLSGLDLSCNKLIGPIPLQ-IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
              L+ L +   + +  + L+ +  L  ++ L +  + L    P  F     +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 397 NKLNGKIPHQLVELKTLEVFSVAYNNL 423
           N L   +  + V+  +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPHQLVELKTL 413
               +     +  L + +      +       L  + +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 414 EVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
              ++++N L   +   T Q  +  E    GN   C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL---QGHMFSRNFN 117
                    + L  L + N      +      G   LR L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSL 155
              L  L L  +     +     +  SL+ L L+ N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 26/112 (23%)

Query: 21  KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN 80
           + L  L I N     H+                               +  L+ L +  +
Sbjct: 31  ENLTELYIENQQHLQHLE------------------------LRDLRGLGELRNLTIVKS 66

Query: 81  HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV 132
            L   +          L  L LS N L+  +  +     +L+ L L G+   
Sbjct: 67  GLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 239 SSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN 297
            +L  L +   +    +      GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 298 NLHGPIPSCFDNTTLHE 314
            L           +L E
Sbjct: 91  ALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 255
           L  + +    SL       ++ ++++        L+         L  L +  + L   +
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71

Query: 256 SDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
           +        +LS L L  N LE  +  +  +   LQ L LS N LH
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 23/124 (18%), Positives = 31/124 (25%), Gaps = 30/124 (24%)

Query: 278 EVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFEFTTKNIAYIYQGK 336
           +    L     L  L + N      +                                  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRG--------------------------- 54

Query: 337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
            L  L  L +  + L    P       R+  LNLS N L      T   L   + L LS 
Sbjct: 55  -LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSG 112

Query: 397 NKLN 400
           N L+
Sbjct: 113 NPLH 116

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 37/160 (23%)

Query: 243 TLDLSYNRLNG-SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301
            L L+ N       +     L QL  +   +N +           + +  + L++N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG- 360
                F                              L  L  L L  N++     +    
Sbjct: 96  VQHKMFKG----------------------------LESLKTLMLRSNRITC---VGNDS 124

Query: 361 --NLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNN 397
              L+ ++ L+L  N +T ++    F  L  + +L+L  N
Sbjct: 125 FIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 194 QILDISDNNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
             L +++N  +    +  F  L  +++++ S N +   ++ G F   S +  + L+ NRL
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 252 NGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
             ++   +  GL  L  L+L  N +          L+ ++LL L +N +    P  FD 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           L ++NN F       I   LP L   N S N +      +F     +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 86  IPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKC 142
           +   +  G  +L+ L L +N +       F     L++++ L L  ++     P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 143 SSLEGLYLNNN 153
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 143 SSLEGLYLNNNSLSGKIPR-WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
                L LNNN  +          L +L+ I   NN +       F     +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 202 NISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
            +  ++    F  L S+K + L  N +   +   +F   SS+  L L  N++  +++   
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 260 -DGLSQLSHLILGHN 273
            D L  LS L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 38/157 (24%)

Query: 268 LILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTT 326
           L L +N     E      +L QL+ ++ SNN +       F+                  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------------- 79

Query: 327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIPS-TFS 384
                       S ++ + L+ N+L   +  ++   L  ++TL L  N +T  + + +F 
Sbjct: 80  -----------ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

Query: 385 NLKYVESLDLSNNKLNGKIPH----QLVELKTLEVFS 417
            L  V  L L +N++   +       L  L TL + +
Sbjct: 127 GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 27/154 (17%)

Query: 73  QFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV 132
             L L+NN  T      +      LR +  SNN +                  +E     
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT----------------DIE----- 73

Query: 133 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLD 191
                +    S +  + L +N L     +    L  L+ +++ +N +   +  + F  L 
Sbjct: 74  ---EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLS 129

Query: 192 LLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 224
            +++L + DN I+   P  F  L S+  ++L  N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 41/157 (26%), Positives = 49/157 (31%), Gaps = 35/157 (22%)

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNL---EGEVPIQLCELNQLQLLDLSNNNLH 300
           L L  N++        D L  L  L LG N L      V   L    QL +LDL  N L 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQLT 101

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG 360
               + FD                             L  L  L + CNKL   +P  I 
Sbjct: 102 VLPSAVFDR----------------------------LVHLKELFMCCNKL-TELPRGIE 132

Query: 361 NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
            LT +  L L  N L       F  L  +    L  N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 37  IPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLT---GEIPEHLAVG 93
           +P  I      LY  +N +  L+   P  F ++  L+ L L +N L      + + L   
Sbjct: 34  VPAGIPTNAQILYLHDNQITKLE---PGVFDSLINLKELYLGSNQLGALPVGVFDSL--- 87

Query: 94  CVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL 150
              L  L L  N L      +F R   L +LK L +  ++   E+P+ + + + L  L L
Sbjct: 88  -TQLTVLDLGTNQLTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLAL 142

Query: 151 NNNSLSGKIPRWLGNLTRLQCIIMPNN 177
           + N L          L+ L    +  N
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 194 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 253 GSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
             +   V D L  L  L +  N L  E+P  +  L  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           + LYL++N ++   P    +L  L+ + + +N L       F  L  L +LD+  N ++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQL 265
            LPS                         F     L  L +  N+L   +   ++ L+ L
Sbjct: 102 VLPS-----------------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137

Query: 266 SHLILGHNNLEGEVPIQLCELNQLQLLDLSNN 297
           +HL L  N L+         L+ L    L  N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 64  SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF-NLTNLK 122
           + + N    + LDL    +   I E+L         +  S+N ++       F  L  LK
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 123 WLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTRLQCIIMPNN 177
            L +  +R              L  L L NNSL        L +L  L  + +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           N    + L L G + +  I    +     + +  ++N +  K+      L RL+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNIS 204
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 325 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS 384
           T + I    Q         LDL   K I  I      L +   ++ S N +   +   F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFP 61

Query: 385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
            L+ +++L ++NN++          L  L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 254
           ++ ++   I        + +  +++ L    +   +             +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 255 ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNL 299
           +  +   L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 29/136 (21%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222
             N  R + + +    +   I      LD    +D SDN I                   
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR------------------ 55

Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ 282
                   K   F     L TL ++ NR+          L  L+ LIL +N+L     + 
Sbjct: 56  --------KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD 107

Query: 283 -LCELNQLQLLDLSNN 297
            L  L  L  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 335 GKVLSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESL 392
           G  L     +D S N++  +   P     L R++TL +++N +          L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 393 DLSNNKLNG-KIPHQLVELKTLEVFSVAYN 421
            L+NN L        L  LK+L    +  N
Sbjct: 94  ILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 114 RNFNLTNLKWLQLEGSRF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI 172
           RN   +++K L L+ SR   G++     +   LE L   N  L+  I   L  L +L+ +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 173 IMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204
            + +N + G + V   +   L  L++S N I 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 27/131 (20%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE 134
           L L N+       E L      L FL+  N  L                  +        
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------------SIAN------ 59

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLL 193
               L K + L+ L L++N +SG +         L  + +  N ++    +E   +L+ L
Sbjct: 60  ----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115

Query: 194 QILDISDNNIS 204
           + LD+ +  ++
Sbjct: 116 KSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 327 KNIAYIYQGKVLSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS 384
                         L  L      L  I  +P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 385 NLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYN 421
               +  L+LS NK+        L +L+ L+   +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 18/99 (18%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 327 KNIAYIYQGKVLSLLSGLDLSCNKL-IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN 385
           + I    + +  S +  L L  ++   G +         ++ L+  +  LT SI +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPK 62

Query: 386 LKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           L  ++ L+LS+N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 189 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 248
            LD  +  +     ++           ++ +      L            + L  L+LS 
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEE------LEFLSTINVGLT---SIANLPKLNKLKKLELSD 73

Query: 249 NRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNN 297
           NR++G +    +    L+HL L  N ++       L +L  L+ LDL N 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 212 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG 271
            P  +K++ L  +  +     G       L  L      L  SI++ +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 272 HNNLEGEVPIQLCELNQLQLLDLSNNNL 299
            N + G + +   +   L  L+LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 59  DGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL 118
           +G +       + L+FL   N  LT  I  +L      L+ L LS+N + G +       
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 119 TNLKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNN 153
            NL  L L G++       + L K  +L+ L L N 
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 28/166 (16%)

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           E L L +  L+         LT+L  + +  N L+      F  L  L  L +++N ++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQ 264
           SLP                        G F + + L  L L  N+L  S+   V D L++
Sbjct: 97  SLPL-----------------------GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK 132

Query: 265 LSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDN 309
           L  L L  N L+  +P    + L  LQ L LS N L       FD 
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 51/187 (27%), Positives = 71/187 (37%), Gaps = 33/187 (17%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
           P   +++ L    L   L   TF   + L  L+L YN+L    +   D L++L  L L +
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 273 NNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI 332
           N L          L QL  L L  N L       FD                        
Sbjct: 93  NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----------------------- 129

Query: 333 YQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIP-STFSNLKYVE 390
                L+ L  L L+ N+L   IP      LT +QTL+LS N L  S+P   F  L  ++
Sbjct: 130 -----LTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182

Query: 391 SLDLSNN 397
           ++ L  N
Sbjct: 183 TITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 17/164 (10%)

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN---SLSGKIPRWLGNLTRLQCIIMP 175
            + + L L+ +        +    + L  L L+ N   +LS  +   L  L  L      
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---A 91

Query: 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS-CFHPL-SIKQVHLSKNMLHGQLKR- 232
           NN L       F  L  L  L +  N +  SLPS  F  L  +K++ L+ N    QL+  
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN----QLQSI 146

Query: 233 --GTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNN 274
             G F   ++L TL LS N+L        D L +L  + L   N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 33/164 (20%)

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
           LDL    L         GL++L+ L L +N L+        +L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 304 PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNL 362
              FD+ T                             L  L L  N+L   +P  +   L
Sbjct: 100 LGVFDHLT----------------------------QLDKLYLGGNQLKS-LPSGVFDRL 130

Query: 363 TRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPH 405
           T+++ L L+ N L  SIP+  F  L  +++L LS N+L   +PH
Sbjct: 131 TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS-VPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 26/176 (14%)

Query: 37  IPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96
           +P  I      L   +  +  L     ++F  +  L +L+L  N L   +   +      
Sbjct: 29  VPSGIPADTEKLDLQSTGLATLS---DATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTE 84

Query: 97  LRFLALSNNNLQ---GHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS-----KCSSLEGL 148
           L  L L+NN L      +F     LT L  L L G++      +SL      + + L+ L
Sbjct: 85  LGTLGLANNQLASLPLGVFDH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKEL 136

Query: 149 YLNNNSLSGKIPRWLG---NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDN 201
            LN N L   IP   G    LT LQ + +  N L+      F +L  LQ + +  N
Sbjct: 137 RLNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 114 RNFNLTNLKWLQLEGSRF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI 172
           RN     ++ L L+  +   G+I    ++  +LE L L N  L   +   L  L +L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 173 IMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 204
            +  N + G + +   +L  L  L++S N + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 27/131 (20%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE 134
           L L N        E L    VNL FL+L N  L                  +        
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----------------SVSN------ 66

Query: 135 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE-FCQLDLL 193
               L K   L+ L L+ N + G +      L  L  + +  N L+    +E   +L+ L
Sbjct: 67  ----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 194 QILDISDNNIS 204
           + LD+ +  ++
Sbjct: 123 KSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 341 LSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK 398
           L  L L    L  +  +P     L +++ L LS N + G +      L  +  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 399 LNG-KIPHQLVELKTLEVFSVAYN 421
           L        L +L+ L+   +   
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
           LD   +   G I         ++ L+L +  L  S+ S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 404 PHQLVELKTLEVFSVAYNNLS 424
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 189 QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY 248
            LD  +  D     ++    +      ++ + L    L              L  L+LS 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVN------LEFLSLINVGLI---SVSNLPKLPKLKKLELSE 80

Query: 249 NRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNN 297
           NR+ G +    + L  L+HL L  N L+    ++ L +L  L+ LDL N 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH 272
           P +++++ L     +     G      +L  L L    L  S+S+ +  L +L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 273 NNLEGEVPIQLCELNQLQLLDLSNNNL 299
           N + G + +   +L  L  L+LS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 59  DGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL 118
           DG I         L+FL L N  L   +  +L      L+ L LS N + G +      L
Sbjct: 38  DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKL 94

Query: 119 TNLKWLQLEGSRF--VGEIPQSLSKCSSLEGLYLNNNSLS 156
            NL  L L G++   +  + + L K   L+ L L N  ++
Sbjct: 95  PNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 32/138 (23%)

Query: 262 LSQLSHLIL-GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
            + +  L+L    + +G++     E   L+ L L N  L                     
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-------------------- 62

Query: 321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG-SI 379
               +  N+        L  L  L+LS N++ G + +    L  +  LNLS N L   S 
Sbjct: 63  ----SVSNLPK------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 380 PSTFSNLKYVESLDLSNN 397
                 L+ ++SLDL N 
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ---GHMFSRNFN 117
            +P    N K L  +DLSNN ++  +          L  L LS N L+      F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 118 LTNLKWLQLEGSRFVGEIPQ-SLSKCSSLEGLYLNNN 153
           L +L+ L L G+  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 271
           P  + +++L  N     L      N   L  +DLS NR++ ++S+     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDN 309
           +N L    P     L  L+LL L  N++   +P   F++
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 33/132 (25%)

Query: 268 LILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTK 327
           L L  N     VP +L     L L+DLSNN +       F N                  
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------------ 76

Query: 328 NIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNLTRIQTLNLSHNNLTGSIP-STFSN 385
                     ++ L  L LS N+L   IP +    L  ++ L+L  N+++  +P   F++
Sbjct: 77  ----------MTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND 124

Query: 386 LKYVESLDLSNN 397
           L  +  L +  N
Sbjct: 125 LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI 403
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LS N+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 404 PH----QLVELKTLEVFSVAYNNLSGEIPE 429
           P      L  L+ L +     N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHG---NDIS-VVPE 119

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 83/468 (17%), Positives = 141/468 (30%), Gaps = 142/468 (30%)

Query: 57  ALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNF 116
            L   +        F  +L+L N +    + E L      L    +  N       S N 
Sbjct: 171 CLSYKVQCKMDFKIF--WLNLKNCNSPETVLEML----QKL-LYQIDPNWTSRSDHSSNI 223

Query: 117 NLTNLKWLQLEGSRFVGE--IPQSLSKCSSLEGLYLNN--NS-------LSGKIPRWLGN 165
            L  +  +Q E  R +        L        L L N  N+       LS KI      
Sbjct: 224 KL-RIHSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAWNAFNLSCKI------ 268

Query: 166 L--TRLQCI-----------IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--C 210
           L  TR + +           I  ++H     P E   L LL+ LD         LP    
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCR----PQDLPREVL 323

Query: 211 -FHPLSIKQVHLSKNMLHGQLKRGTFF---NCSSLVT-LDLSYNRLNGS----------- 254
             +P  +  +      +   L     +   NC  L T ++ S N L  +           
Sbjct: 324 TTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 255 ------ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF- 307
                 I   +     LS  ++  + ++ +V + + +L++  L++         IPS + 
Sbjct: 381 FPPSAHIPTIL-----LS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 308 -------DNTTLH----EKKQIREKFEFTTKNI----AYIY-----------QGKVLSLL 341
                  +   LH    +   I + F+           Y Y             + ++L 
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 342 SG--LDLS--CNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN 397
               LD      K+            R  +      N +GSI +T   LK+ +   + +N
Sbjct: 494 RMVFLDFRFLEQKI------------RHDSTAW---NASGSILNTLQQLKFYKPY-ICDN 537

Query: 398 KLNGKIPHQLVELKTLEVFSVAYN-NLSGEIPEWT--AQFATFNESSY 442
                   +LV    +  F      NL     ++T   + A   E   
Sbjct: 538 D---PKYERLV--NAILDFLPKIEENLI--CSKYTDLLRIALMAEDEA 578

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 55/185 (29%)

Query: 115 NFNLTNLKWLQLEGS-RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCII 173
           +   T  + ++L G    + ++  +LS   + + L L+ N++  KI     +L+ ++   
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI----SSLSGMEN-- 71

Query: 174 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 233
                              L+IL +  N I            I+                
Sbjct: 72  -------------------LRILSLGRNLIK----------KIE---------------N 87

Query: 234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLL 292
                 +L  L +SYN++  S+S  ++ L  L  L + +N +     I  L  L++L+ L
Sbjct: 88  LDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145

Query: 293 DLSNN 297
            L+ N
Sbjct: 146 LLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 62  IPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL 121
           + ++   +K  + L LS N++  +I   L+ G  NLR L+L  N ++  + + +     L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 122 KWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-----LGNLTRLQCIIMPN 176
           + L +  ++        + K  +L  LY++NN    KI  W     L  L +L+ +++  
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNN----KITNWGEIDKLAALDKLEDLLLAG 149

Query: 177 N 177
           N
Sbjct: 150 N 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 338 LSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
           L     L LS N +  I  +      +  ++ L+L  N +   I +  +    +E L +S
Sbjct: 47  LKACKHLALSTNNIEKISSL----SGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
            N++   +   + +L  L V  ++ N ++
Sbjct: 102 YNQIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 37  IPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN 96
           +P  I      L    NS+ +L       F  +  L  L L  N L   +P  +     +
Sbjct: 22  VPTGIPAQTTYLDLETNSLKSLP---NGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTS 77

Query: 97  LRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS-----KCSSLEGL 148
           L +L LS N LQ     +F +   LT LK L L  ++      QSL      K + L+ L
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDL 129

Query: 149 YLNNNSLSGKIPR-WLGNLTRLQCIIMPNN 177
            L  N L   +P      LT LQ I + +N
Sbjct: 130 RLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 32/156 (20%)

Query: 244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI 303
           LDL  N L    +   D L+ L+ L LG N L+        +L  L  L+LS N L    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 304 PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI-GNL 362
              FD                             L+ L  L L+ N+L   +P  +   L
Sbjct: 93  NGVFDK----------------------------LTQLKELALNTNQL-QSLPDGVFDKL 123

Query: 363 TRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNN 397
           T+++ L L  N L  S+P   F  L  ++ + L +N
Sbjct: 124 TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 7/135 (5%)

Query: 143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 202
           +    L L  NSL          LT L  + +  N L+      F +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 203 ISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV- 259
           +  SLP+  F  L+ +K++ L+ N L   L  G F   + L  L L  N+L  S+ D V 
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144

Query: 260 DGLSQLSHLILGHNN 274
           D L+ L ++ L H+N
Sbjct: 145 DRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 194 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
             LD+  N++       F  L+ + Q++L  N L   L  G F   +SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 253 GSISDWV-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDN 309
            S+ + V D L+QL  L L  N L+  +P  + + L QL+ L L  N L       FD 
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV-DGLSQLSHLILG 271
           PL   ++ L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 272 HNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPSCFDN 309
            N ++ E+  ++   L+QL+ L+L +N +   +P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 73  QFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQG---HMFSRNFNLTNLKWLQLEGS 129
             L L++N L     + L     +L  L L  N L G   + F      ++++ LQL  +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 130 RFVGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLG---NLTRLQCIIMPNN 177
           +      + +S         L+ L L +N +S  +    G   +L  L  + + +N
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 43/375 (11%), Positives = 108/375 (28%), Gaps = 69/375 (18%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNL--QGHMFSRNFNL 118
            +     +++ L F       ++ +  E +A  C +L  + + +  +      F    NL
Sbjct: 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG--KIPRWLGNLTRL---QCII 173
                  L     + E   +L     L  L L+    +    +  +   + +L     ++
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305

Query: 174 MPNNHLEGPIPVEFCQLDLLQILD----ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 229
              +H          +   L++L+    I D  +      C     +K++ + +      
Sbjct: 306 ETEDHCT-----LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ---LKRLRIERGADEQG 357

Query: 230 LKRGTFF-----------NCSSLVTLDLSYNRLN----GSISDWVDGLSQLSHLILGHNN 274
           ++                 C  L  + +  + +      SI  ++  L     ++L    
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 275 LEGEVPIQ------LCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN 328
              ++P+       L    +L+                                  T   
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-----------------------LTDLG 454

Query: 329 IAYIYQGKVLSLLSGLDLSCNKL--IGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFSN 385
           ++YI  G+    +  + L        G +         +Q L +     +  +I +  + 
Sbjct: 455 LSYI--GQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCCFSERAIAAAVTK 511

Query: 386 LKYVESLDLSNNKLN 400
           L  +  L +   + +
Sbjct: 512 LPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 51/389 (13%), Positives = 109/389 (28%), Gaps = 73/389 (18%)

Query: 51  FNNSMNALDGSIPSSFGNMKFLQFLDLSN--------------NHLTGEIPEHLAVGCVN 96
                 A    +   F N   L+ L L                          ++     
Sbjct: 57  MALCYTATPDRLSRRFPN---LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 97  LRFLALSNNNL--QGHMFSRNFNLTNLKWLQLEGSRFVGE--IPQSLSKCSSLEGLYLNN 152
           L+ +      +              +L+ L+L+         +   ++ C  ++ L +  
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173

Query: 153 NSLSGKIPRWLG----NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP 208
           +S S K  +WL     + T L+ +                   + +   IS  ++     
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVL----------------NFYMTEFAKISPKDLETIAR 217

Query: 209 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHL 268
           +C   +S+K        L G  K     N        L+ +         +    +L  L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAA--NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 269 ILGHNNLEGEVPIQLCELNQLQLLDLSN-----NNLHGPIPSCFDNTTLHEKKQIREKFE 323
            L +      +PI      Q++ LDL        +    I  C +   L  +  I     
Sbjct: 276 GLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI----- 329

Query: 324 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT------------RIQTLNLS 371
              + +  +   +    L  L +        +  + G ++             ++ + + 
Sbjct: 330 -GDRGLEVL--AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386

Query: 372 HNNLT----GSIPSTFSNLKYVESLDLSN 396
            +++T     SI +   NL     + L  
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRLVLLDR 415

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 51/369 (13%), Positives = 104/369 (28%), Gaps = 58/369 (15%)

Query: 75  LDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE 134
             +   +     P  +      +R + L            +F   NL      G  +   
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKG--------KPHFADFNLVPDGWGGYVYPW- 96

Query: 135 IPQSLSKCSSLEGLYLNNNSLS----GKIPRWLGNLTRLQ---CIIMPNNHLEGPIPVEF 187
           I    S  + LE + L    ++      I +   N   L    C     + L        
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA--AIAAT 154

Query: 188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK---NMLHGQLKRGTFF----NCSS 240
           C+   L+ LD+ ++++                 L     + L  ++           C +
Sbjct: 155 CRN--LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGH--NNLEGEVPIQLCEL--NQLQLLDLSN 296
           L +L L+       ++  +    QL  L  G     +  +V   L        +L  LS 
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
                                     +     +  +Y     S L+ L+LS   +     
Sbjct: 273 FW------------------------DAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDL 306

Query: 357 LQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415
           +++     ++Q L +        +    S  K +  L +  ++     P+  +  + L  
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 416 FSVAYNNLS 424
            S+    L 
Sbjct: 367 VSMGCPKLE 375

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 57/447 (12%), Positives = 122/447 (27%), Gaps = 69/447 (15%)

Query: 41  IADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL 100
            AD       +   +     ++ SS+     L+ + L    +T +  E +A    N + L
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVL 135

Query: 101 ALSNNNLQG--HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS------------------ 140
            LS+        + +      NLK L L  S         LS                  
Sbjct: 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 141 -------------KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ------CIIMPNNHLEG 181
                        +C +L+ L LN      K+   L    +L+              +  
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 182 PIPVEFCQLDLLQIL----DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 237
            + V       L+ L    D     +      C     +  ++LS   +           
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR---LTTLNLSYATVQSYDLVKLLCQ 312

Query: 238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP---------IQLCE-LN 287
           C  L  L +     +  +         L  L +  +      P         + +     
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 288 QLQLLDLSNNN-----LHGPIPSCFDNTTLHEKKQIREKFEFTTKNI---AYIYQGKVLS 339
           +L+ +           L     +  + T         +  ++ T       +    +   
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNK 398
            L  L LS                +++ L+++    +   +    S    +  L++ +  
Sbjct: 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

Query: 399 LNGK-IPHQLVELKTLEVFSVAYNNLS 424
              K +     +L+T+    ++  ++S
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSVS 519

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 27/201 (13%), Positives = 73/201 (36%), Gaps = 12/201 (5%)

Query: 220 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEV 279
            + +N        G F+        ++S+      +S  +D +  L++L +   N     
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 280 PIQLCELNQLQLL--DLSNNNLHGPIPSCFDN-TTLHEKKQIREK-FEFTTKNIAYIYQG 335
                 L  L+++   L ++ +   + S   N   L     + +  F+        ++  
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGN---LTRIQTLNLSHNNLTGS----IPSTFSNLKY 388
                L  L +   +    +         L +++T+++S   LT      +      +K+
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 389 VESLDLSNNKLNGKIPHQLVE 409
           ++ +++  N L+ ++  +L +
Sbjct: 309 LKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 36/169 (21%)

Query: 2   LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADV-LPSL-----------Y 49
           L+ +         +       L  L+I +      +  +I    LP+L           Y
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY 233

Query: 50  AFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV--NLRFLALSNNNL 107
            F+  MN               L++L + +      + E      +   L  + +S   L
Sbjct: 234 GFDGDMNVFRPLFSK--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 108 QGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
                                      +   + K   L+ + +  N LS
Sbjct: 292 --------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 7e-04
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 15  LPIHSHKRLGMLDISNNNFRGHIPVEIA--DVLPSLYAFNNSMNALDGS----IPSSFGN 68
                   L  L I +   +  +       D+LP L   + S   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 69  MKFLQFLDLSNNHLTGEIPEHLA 91
           +K L+F+++  N+L+ E+ + L 
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQ 328

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 18/174 (10%)

Query: 143 SSLEGLYLNNNSLSGK--IPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISD 200
           +S++ +  NN+ +     I   L N+  L    +  N L   I     +L  L  L ++ 
Sbjct: 41  NSIDQIIANNSDIKSVQGIQY-LPNVRYLA---LGGNKLH-DISA-LKELTNLTYLILTG 94

Query: 201 NNISGSLPS-CFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
           N +  SLP+  F  L+ +K++ L +N L   L  G F   ++L  L+L++N+L  S+   
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151

Query: 259 V-DGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLSNNNLHGPIPS-CFDN 309
           V D L+ L+ L L +N L+  +P  + + L QL+ L L  N L   +P   FD 
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 45  LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSN 104
           L  L    N + +L   +   F  +  L+ L L  N L   +P+ +     NL +L L++
Sbjct: 87  LTYLILTGNQLQSLPNGV---FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142

Query: 105 NNLQG---HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS-----KCSSLEGLYLNNNSLS 156
           N LQ     +F +   LTNL  L L  ++      QSL      K + L+ L L  N L 
Sbjct: 143 NQLQSLPKGVFDK---LTNLTELDLSYNQL-----QSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 157 GKIPRWLG---NLTRLQCIIMPNN 177
             +P   G    LT LQ I + +N
Sbjct: 195 S-VPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 44/184 (23%)

Query: 237 NCS-SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS 295
           +     +  +L    +  +++   + L+ +  +I  +++++    IQ   L  ++ L L 
Sbjct: 16  DAFAETIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALG 71

Query: 296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI 355
            N LH  I +                                L+ L+ L L+ N+L   +
Sbjct: 72  GNKLH-DISA-LKE----------------------------LTNLTYLILTGNQL-QSL 100

Query: 356 PLQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKLNGKIPH----QLVE 409
           P  +   LT ++ L L  N L  S+P   F  L  +  L+L++N+L   +P     +L  
Sbjct: 101 PNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTN 158

Query: 410 LKTL 413
           L  L
Sbjct: 159 LTEL 162

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 37/263 (14%), Positives = 73/263 (27%), Gaps = 40/263 (15%)

Query: 18  HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG-----NMKFL 72
                L  +++++          +  V          +N+L              +   +
Sbjct: 98  SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQI 157

Query: 73  QFLDLSNNHLTGEIPEHLAVG---CVNLRFLALSNNNLQ-------GHMFSRNFNLTNLK 122
             L LSNN LT      L  G     ++  L+L +  L             RN     L+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN---RQLQ 214

Query: 123 WLQLEGSRF----VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-------NLTRLQC 171
            L +  +         + ++  +  SLE L+L  N LS +  + L           R+  
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVV 274

Query: 172 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML--HGQ 229
            +     +      E+  + L ++     N  S         L +    L  +       
Sbjct: 275 SLTEGTAVS-----EYWSVILSEVQ---RNLNSWDRARVQRHLELLLRDLEDSRGATLNP 326

Query: 230 LKRGTFF-NCSSLVTLDLSYNRL 251
            ++         +  L       
Sbjct: 327 WRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 37/277 (13%), Positives = 82/277 (29%), Gaps = 36/277 (12%)

Query: 68  NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQ-------GHMFSRNFNLTN 120
               L  ++L++  L       L    +  R L L  N+L          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 121 LKWLQLEGSRF----VGEIPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQCI 172
           +  L+L  +      V  + + L+  +S+  L L +  L  +    +   L    +LQ +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 173 IMPNNHLEGPIPVEFCQL----DLLQILDISDNNIS--GSLPSCFHPLSIKQVHLSKNML 226
            +  N       +   +       L++L +  N +S  G            +      + 
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR-DLGGAAEGGARVVVS 275

Query: 227 HGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCEL 286
             +    + +    L  +  + N  + +    V    +L    L  +      P +  +L
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRAR---VQRHLELLLRDLEDSRGATLNPWRKAQL 332

Query: 287 ----NQLQLLDLSNNNLHGP-----IPSCFDNTTLHE 314
                +++ L     +   P      P        H 
Sbjct: 333 LRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHHH 369

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
           +Q +DLSN+ +       +   C  L+ L+L    L   + +     +NL  L L G   
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 132 VGE--IPQSLSKCSSLEGLYLN------NNSLSGKIPRWLGNLTRL 169
             E  +   LS CS L+ L L+         +   +      +T+L
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 14/215 (6%)

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
            +       + +   L   F P  ++ + LS +++      G    CS L  L L   RL
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130

Query: 252 NGSISDWVDGLSQLSHLILGH-NNLEGEVPIQLCE-LNQLQLLDLS------NNNLHGPI 303
           +  I + +   S L  L L   +         L    ++L  L+LS        ++   +
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190

Query: 304 PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ-IGNL 362
               +   + +      +      +++ + +      L  LDLS + ++     Q    L
Sbjct: 191 AHVSET--ITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQL 246

Query: 363 TRIQTLNLSH-NNLTGSIPSTFSNLKYVESLDLSN 396
             +Q L+LS   ++          +  +++L +  
Sbjct: 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.55
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.7
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.82

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.9e-55  Score=472.17  Aligned_cols=465  Identities=32%  Similarity=0.510  Sum_probs=382.0

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      |+|++|.+.+.+|..  .+++|++|++++|.+++.+|..++..+++|+.|++++|.+++..|..|+++++|++|++++|.
T Consensus       252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence            556666665555533  566666666666666667777777656788888888888888888888888888888888888


Q ss_pred             CccccchhHhhCCCCCCEEEcccCccCccCCccccCCC-CCCEEEccCCcCcccCCcCCCC--CCccCeeecccCcCCCC
Q 045598           82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLT-NLKWLQLEGSRFVGEIPQSLSK--CSSLEGLYLNNNSLSGK  158 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~~~~~  158 (536)
                      +++.+|...+..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+.
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence            88788877667888888898888888877777777776 8999999998888777777766  78899999999999888


Q ss_pred             CCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCC
Q 045598          159 IPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFN  237 (536)
Q Consensus       159 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~  237 (536)
                      .|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+.++.. +..
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~  488 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSN  488 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGG
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-Hhc
Confidence            89999999999999999999998999999999999999999999998877766 6789999999999998777765 899


Q ss_pred             CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598          238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ  317 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  317 (536)
                      +++|++|++++|++++.+|.++..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..........
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998888765432111110


Q ss_pred             ccc--eeE-Eee-------------------------------------cccee--eeccccccccceEEccCCcCcCCC
Q 045598          318 IRE--KFE-FTT-------------------------------------KNIAY--IYQGKVLSLLSGLDLSCNKLIGPI  355 (536)
Q Consensus       318 ~~~--~~~-~~~-------------------------------------~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~  355 (536)
                      ...  ... ...                                     +....  ......++.|+.|++++|.+++.+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence            000  000 000                                     00000  001123578999999999999999


Q ss_pred             cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc
Q 045598          356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA  435 (536)
Q Consensus       356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~  435 (536)
                      |..++.+++|+.|+|++|++++.+|+.++++++|++|||++|++++.+|..+..+++|+.|++++|+++|.+|.. ..+.
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~  727 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE  727 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986 4788


Q ss_pred             cCCccccccCcCCCCCCCCCCCCCCCCCcccCCCC
Q 045598          436 TFNESSYEGNTFLCGLPLPICRSPATMSEASIGNE  470 (536)
Q Consensus       436 ~l~~l~l~~n~~~c~~~l~~C~~~~~~~~~~~~~~  470 (536)
                      ++...++.|||.+|+.++..|.......+..+.+.
T Consensus       728 ~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~  762 (768)
T 3rgz_A          728 TFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS  762 (768)
T ss_dssp             GSCGGGGCSCTEEESTTSCCCCSCC----------
T ss_pred             cCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCc
Confidence            99999999999999999888987776666555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-52  Score=451.19  Aligned_cols=467  Identities=21%  Similarity=0.196  Sum_probs=345.6

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+++..+..+.++++|++|++++|...+.++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n  107 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC  107 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence            48999999998889999999999999999997666775555566899999999999999888999999999999999999


Q ss_pred             cCccccchh-HhhCCCCCCEEEcccCccCccCC-ccccCCCCCCEEEccCCcCcccCCcCCCCC--CccCeeecccCcCC
Q 045598           81 HLTGEIPEH-LAVGCVNLRFLALSNNNLQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSLSKC--SSLEGLYLNNNSLS  156 (536)
Q Consensus        81 ~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~  156 (536)
                      .+++.++.. .++.+++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.
T Consensus       108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred             CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence            998655553 35789999999999999987655 578899999999999999988777777766  78888888888887


Q ss_pred             CCCCcccCCCCC------CCeEEccCCccccCCccccc------------------------------------C--CCC
Q 045598          157 GKIPRWLGNLTR------LQCIIMPNNHLEGPIPVEFC------------------------------------Q--LDL  192 (536)
Q Consensus       157 ~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~------------------------------------~--l~~  192 (536)
                      +..+..+..+++      |++|++++|.+.+..+..+.                                    +  .++
T Consensus       188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~  267 (844)
T 3j0a_A          188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS  267 (844)
T ss_dssp             CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred             cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence            766665555554      78888877765433332221                                    1  256


Q ss_pred             CCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcc
Q 045598          193 LQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG  271 (536)
Q Consensus       193 L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  271 (536)
                      |+.|++++|.+.+..+..+ .+++|+.|++++|.+.+.. +..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            7777777777776666555 5667777888777775433 3347777778888888777776667777777777888887


Q ss_pred             cccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh------------------------------------hh
Q 045598          272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH------------------------------------EK  315 (536)
Q Consensus       272 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~------------------------------------~~  315 (536)
                      +|.+....+..|..+++|+.|++++|.+++...  +......                                    ..
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~  424 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR  424 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence            777776666667777777777777777664321  0000000                                    00


Q ss_pred             ccccceeEEeeccceeeecc---ccccccceEEccCCcCc-----CCCcccccCCCCCCEEeCCCccCCCCCcccccCCC
Q 045598          316 KQIREKFEFTTKNIAYIYQG---KVLSLLSGLDLSCNKLI-----GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  387 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  387 (536)
                      ......+.+..+.+......   ..+++|+.|++++|.+.     +..+..|.++++|+.|+|++|.+++..+..|.+++
T Consensus       425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  504 (844)
T 3j0a_A          425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT  504 (844)
T ss_dssp             CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred             CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence            00112233333333322111   22456777777777665     33345678888899999999999988888889999


Q ss_pred             CCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------
Q 045598          388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------  454 (536)
Q Consensus       388 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-------------  454 (536)
                      +|++|+|++|++++..+..+.  ++|+.|++++|++++..|..+   .+++.+++.+|||.|+|++.             
T Consensus       505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~  579 (844)
T 3j0a_A          505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTI  579 (844)
T ss_dssp             SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTT
T ss_pred             hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHHhcCccc
Confidence            999999999999877666655  789999999999998888754   57889999999999999763             


Q ss_pred             -------CCCCCCCCCcccCCCCcCccc
Q 045598          455 -------ICRSPATMSEASIGNERDDNL  475 (536)
Q Consensus       455 -------~C~~~~~~~~~~~~~~~~~~~  475 (536)
                             .|..|...++.++.......|
T Consensus       580 ~~~~~~~~C~~p~~~~g~~l~~~~~~~C  607 (844)
T 3j0a_A          580 AGPPADIYCVYPDSFSGVSLFSLSTEGC  607 (844)
T ss_dssp             CCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred             ccccccCccCCchhhCCCccccCccccC
Confidence                   599998888887777665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-51  Score=433.64  Aligned_cols=461  Identities=20%  Similarity=0.203  Sum_probs=337.4

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+++..|..+.++++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence            4899999999888889999999999999999998655666655 889999999999999888889999999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC--eeecccCcCCCC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE--GLYLNNNSLSGK  158 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~~~~~  158 (536)
                      .++ .++...++.+++|++|++++|.+++.....+..+++|++|++++|.+.+..+..+..+++|+  .|++++|.+.+.
T Consensus       116 ~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          116 GIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             CCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             Ccc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence            998 55444457889999999999998876655666688888888888888766666666666666  566666555433


Q ss_pred             C---------------------------------------------------------------------------Cccc
Q 045598          159 I---------------------------------------------------------------------------PRWL  163 (536)
Q Consensus       159 ~---------------------------------------------------------------------------~~~~  163 (536)
                      .                                                                           +..|
T Consensus       195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~  274 (606)
T 3t6q_A          195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF  274 (606)
T ss_dssp             CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred             ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence            3                                                                           3334


Q ss_pred             CCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCcc
Q 045598          164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV  242 (536)
Q Consensus       164 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  242 (536)
                      ..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+.+.++...+..+++|+
T Consensus       275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  353 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR  353 (606)
T ss_dssp             TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred             ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence            55556666666666555 344455556666666666666555444332 4556666666666665555555566666677


Q ss_pred             EEEccCCcCCCcc--chhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcc-ccccchhhhcccc
Q 045598          243 TLDLSYNRLNGSI--SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC-FDNTTLHEKKQIR  319 (536)
Q Consensus       243 ~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~~~  319 (536)
                      +|++++|.+.+..  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+.. +.....      .
T Consensus       354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~------L  427 (606)
T 3t6q_A          354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL------L  427 (606)
T ss_dssp             EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT------C
T ss_pred             EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc------C
Confidence            7777766666443  455666677777777777766666666666777777777777666554332 333221      1


Q ss_pred             ceeEEeeccceeeec--cccccccceEEccCCcCcCC---CcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598          320 EKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIGP---IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL  394 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  394 (536)
                      ..+.+..+.+.....  ...+++|++|++++|.+.+.   .+..+..+++|++|++++|++++..|..|..+++|++|+|
T Consensus       428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence            222333333322221  13478899999999998763   3356888999999999999999888899999999999999


Q ss_pred             CCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC-------------------C
Q 045598          395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-------------------I  455 (536)
Q Consensus       395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~-------------------~  455 (536)
                      ++|++++..|..+.++++| .|++++|++++..|..+..+++++.+++.+|||.|+|+..                   .
T Consensus       508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~  586 (606)
T 3t6q_A          508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTL  586 (606)
T ss_dssp             CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCB
T ss_pred             CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCe
Confidence            9999999999999999999 9999999999988888888999999999999999999742                   4


Q ss_pred             CCCCCCCCcccCCCCc
Q 045598          456 CRSPATMSEASIGNER  471 (536)
Q Consensus       456 C~~~~~~~~~~~~~~~  471 (536)
                      |..|...+|.++..++
T Consensus       587 C~~p~~~~g~~l~~~~  602 (606)
T 3t6q_A          587 CENPPLLRGVRLSDVT  602 (606)
T ss_dssp             EEESGGGTTCBGGGCC
T ss_pred             eCCchHhCCCeeeeee
Confidence            8888777777665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.6e-51  Score=441.28  Aligned_cols=441  Identities=30%  Similarity=0.451  Sum_probs=329.8

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|+|++|.+.+.+|. +.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..  .+++|++|++++|
T Consensus       204 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n  279 (768)
T 3rgz_A          204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN  279 (768)
T ss_dssp             EEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS
T ss_pred             EEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCC
Confidence            488999999988886 899999999999999998777777765 889999999999888776654  7888888888888


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcC-CCCCCccCeeecccCcCCCCC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSGKI  159 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~  159 (536)
                      .+++.+|..++..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..
T Consensus       280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~  359 (768)
T 3rgz_A          280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL  359 (768)
T ss_dssp             EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred             ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence            8887788777555688888888888888777888888888888888888887666654 778888888888888877677


Q ss_pred             CcccCCCC-CCCeEEccCCccccCCcccccC--CCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCccccccc
Q 045598          160 PRWLGNLT-RLQCIIMPNNHLEGPIPVEFCQ--LDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTF  235 (536)
Q Consensus       160 ~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~  235 (536)
                      |..+..++ +|++|++++|.+.+..+..+..  +++|+.|++++|.+++..+..+ .+++|+.|++++|.+.+.++.. +
T Consensus       360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l  438 (768)
T 3rgz_A          360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-L  438 (768)
T ss_dssp             CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-G
T ss_pred             cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-H
Confidence            77666665 6777777777766555555554  5666666666666665555444 4556666666666665554443 6


Q ss_pred             CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598          236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK  315 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  315 (536)
                      ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|++++..|..+....... 
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-  517 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-  517 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666555433211 


Q ss_pred             ccccceeEEeecccee-eec-cccccccceEEccCCcCcCCCcc------------------------------------
Q 045598          316 KQIREKFEFTTKNIAY-IYQ-GKVLSLLSGLDLSCNKLIGPIPL------------------------------------  357 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~------------------------------------  357 (536)
                           .+.+..+.+.. ++. ...+++|+.|++++|.+.+.+|.                                    
T Consensus       518 -----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          518 -----ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             -----EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             -----EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence                 22222222221 111 12356777777777776655443                                    


Q ss_pred             ----------------------------------cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC
Q 045598          358 ----------------------------------QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI  403 (536)
Q Consensus       358 ----------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  403 (536)
                                                        .++.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                              4455688999999999999999999999999999999999999999


Q ss_pred             chhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          404 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       404 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      |..+.++++|+.||+++|++++.+|..+..+++++.+++++|+.....|
T Consensus       673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            9999999999999999999999999999999999999999998766444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-48  Score=417.60  Aligned_cols=466  Identities=21%  Similarity=0.212  Sum_probs=283.0

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      |+|++|.+++..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            455555555333334555556666666655555 3332222235566666666666655555556666666666666666


Q ss_pred             CccccchhHhh--CCCCCCEEEcccCccCccCCcccc-------------------------------------------
Q 045598           82 LTGEIPEHLAV--GCVNLRFLALSNNNLQGHMFSRNF-------------------------------------------  116 (536)
Q Consensus        82 l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~-------------------------------------------  116 (536)
                      ++ .++...+.  .+++|++|++++|.+++..+..+.                                           
T Consensus       157 l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          157 IQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             CC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             cc-ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence            55 33322211  234555555555555443332221                                           


Q ss_pred             --------CCC--CCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc-----
Q 045598          117 --------NLT--NLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG-----  181 (536)
Q Consensus       117 --------~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----  181 (536)
                              +++  +|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|...+     
T Consensus       236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~  315 (680)
T 1ziw_A          236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA  315 (680)
T ss_dssp             EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred             ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence                    121  25555555555554444455555555555555555544333333333333333333221110     


Q ss_pred             ----CCcccccCCCCCCEEEccCCcCcccCCCCC-CCC----------------------------CccEEEccCCCCCC
Q 045598          182 ----PIPVEFCQLDLLQILDISDNNISGSLPSCF-HPL----------------------------SIKQVHLSKNMLHG  228 (536)
Q Consensus       182 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~----------------------------~L~~L~l~~n~~~~  228 (536)
                          .....|..+++|+.|++++|.+.+..+..+ .++                            +|+.|++++|.+.+
T Consensus       316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~  395 (680)
T 1ziw_A          316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK  395 (680)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred             cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence                001134445555555555665555444333 233                            45555555566543


Q ss_pred             cccccccCCCCCccEEEccCCcCCCccc-hhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC--CCCCc
Q 045598          229 QLKRGTFFNCSSLVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH--GPIPS  305 (536)
Q Consensus       229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~  305 (536)
                      . .+..|..+++|++|++++|.+.+.++ ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|.
T Consensus       396 ~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~  474 (680)
T 1ziw_A          396 I-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS  474 (680)
T ss_dssp             E-CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred             E-ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCc
Confidence            3 33458889999999999999876554 67888999999999999988777888888888999999888876  34555


Q ss_pred             cccccchhhhccccceeEEeeccceeeecc--ccccccceEEccCCcCcCCCc--------ccccCCCCCCEEeCCCccC
Q 045598          306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKLIGPIP--------LQIGNLTRIQTLNLSHNNL  375 (536)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l  375 (536)
                      .+.....      ...+.+..+.+..++..  ..+++|++|++++|.+++..+        ..+.++++|++|+|++|++
T Consensus       475 ~~~~l~~------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          475 PFQPLRN------LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             TTTTCTT------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             ccccCCC------CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            5544332      22334444444444432  347899999999999886422        2378899999999999999


Q ss_pred             CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcc-ccccCCccccccCcCCCCCCC-
Q 045598          376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL-  453 (536)
Q Consensus       376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~l~l~~n~~~c~~~l-  453 (536)
                      +.+.++.|.++++|++|+|++|+++++.+..|.++++|+.|++++|++++..+..+. .+++++.+++.+|||.|+|+. 
T Consensus       549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~  628 (680)
T 1ziw_A          549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI  628 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCC
T ss_pred             CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccH
Confidence            977667899999999999999999988888889999999999999999988887776 688999999999999999985 


Q ss_pred             C--------------------CCCCCCCCCcccCCCCcCcccc
Q 045598          454 P--------------------ICRSPATMSEASIGNERDDNLI  476 (536)
Q Consensus       454 ~--------------------~C~~~~~~~~~~~~~~~~~~~~  476 (536)
                      .                    .|..|...+++++..+++..++
T Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~  671 (680)
T 1ziw_A          629 AWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK  671 (680)
T ss_dssp             SSEECCSSCC---------------------------------
T ss_pred             HHHHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhcC
Confidence            2                    4667776666666666555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-49  Score=416.21  Aligned_cols=456  Identities=19%  Similarity=0.159  Sum_probs=343.0

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+++..+..+.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence            478888888887777888899999999999888844454444 4788999999999888877888899999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCc-cCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC----eeecccCcC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQG-HMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE----GLYLNNNSL  155 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~l~~n~~  155 (536)
                      .++ .++...++.+++|++|++++|.+++ ..+..+.++++|++|++++|.+.+..+..+..+.+|+    .|++++|.+
T Consensus       115 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          115 KLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI  193 (606)
T ss_dssp             CCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred             ccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence            887 5554445788889999999888876 3477788888899888888888776666555554443    455555544


Q ss_pred             CCCCCcc-------------------------------------------------------------------------
Q 045598          156 SGKIPRW-------------------------------------------------------------------------  162 (536)
Q Consensus       156 ~~~~~~~-------------------------------------------------------------------------  162 (536)
                      .+..+..                                                                         
T Consensus       194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~  273 (606)
T 3vq2_A          194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND  273 (606)
T ss_dssp             CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred             ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence            4222222                                                                         


Q ss_pred             -------cCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccccc
Q 045598          163 -------LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF  235 (536)
Q Consensus       163 -------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  235 (536)
                             +..+++|+.|+++++.+.. .+ .+..+++|+.|++++|.+. ..|.. ..++|+.|++++|...+..   .+
T Consensus       274 ~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp~~-~l~~L~~L~l~~n~~~~~~---~~  346 (606)
T 3vq2_A          274 FSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFPTL-DLPFLKSLTLTMNKGSISF---KK  346 (606)
T ss_dssp             CCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCCCC-CCSSCCEEEEESCSSCEEC---CC
T ss_pred             ccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccccC-CCCccceeeccCCcCccch---hh
Confidence                   2334555566666665543 23 6777889999999999994 55555 8889999999999654443   37


Q ss_pred             CCCCCccEEEccCCcCCCc--cchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC-ccccccch
Q 045598          236 FNCSSLVTLDLSYNRLNGS--ISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDNTTL  312 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~  312 (536)
                      ..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+.....
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            7899999999999998765  37788889999999999999884 66788899999999999999888766 45544332


Q ss_pred             hhhccccceeEEeeccceeeec--cccccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC
Q 045598          313 HEKKQIREKFEFTTKNIAYIYQ--GKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV  389 (536)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  389 (536)
                      ..      .+.+..+.+.....  ...+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..|..+..+++|
T Consensus       426 L~------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          426 LL------YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             CC------EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CC------EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            22      22233333332221  2347899999999999987 478899999999999999999999889999999999


Q ss_pred             CEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc-cCCccccccCcCCCCCCCC--------------
Q 045598          390 ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA-TFNESSYEGNTFLCGLPLP--------------  454 (536)
Q Consensus       390 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~l~~n~~~c~~~l~--------------  454 (536)
                      ++|++++|++++..|..+.++++|+.|++++|+++ .+|..+..++ +++.+++.+|||.|+|+..              
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~  578 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLV  578 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBS
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCccccc
Confidence            99999999999988999999999999999999999 5666677786 5999999999999999863              


Q ss_pred             -----CCCCCCCCCcccCCCCcCc
Q 045598          455 -----ICRSPATMSEASIGNERDD  473 (536)
Q Consensus       455 -----~C~~~~~~~~~~~~~~~~~  473 (536)
                           .|..|...++..+..++..
T Consensus       579 ~~~~~~C~~p~~~~~~~l~~~~~~  602 (606)
T 3vq2_A          579 NVEQMTCATPVEMNTSLVLDFNNS  602 (606)
T ss_dssp             SGGGCCCC----------------
T ss_pred             CCccceeCCChHhCCCEeeecccc
Confidence                 4777766666666555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-47  Score=399.94  Aligned_cols=419  Identities=22%  Similarity=0.215  Sum_probs=300.6

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence            4788888888777777888888888888888887 444444444788888888888888777778888888888888888


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCcCcccCCcCCCCCCcc----CeeecccCcC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL----EGLYLNNNSL  155 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~~  155 (536)
                      .++ .++...++.+++|++|++++|.++.. .+..+.++++|++|++++|.+.+..+..+..+.+|    +.+++++|.+
T Consensus       111 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          111 NLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             ccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence            887 66654457788888888888888763 46777888888888888888776666666666666    6677777666


Q ss_pred             CCCCCcccCCCCCCCeEEccCC----------------------------------------------------------
Q 045598          156 SGKIPRWLGNLTRLQCIIMPNN----------------------------------------------------------  177 (536)
Q Consensus       156 ~~~~~~~~~~l~~L~~L~l~~n----------------------------------------------------------  177 (536)
                      .+..+..+... +|++|++++|                                                          
T Consensus       190 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          190 NFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             CEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             eecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence            54444433332 3444444333                                                          


Q ss_pred             ccccCCcccccCCCCCCEEEccCCcCcccCCCCC--------------------CCCCccEEEccCCCCCCcccccccCC
Q 045598          178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF--------------------HPLSIKQVHLSKNMLHGQLKRGTFFN  237 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------~~~~L~~L~l~~n~~~~~~~~~~~~~  237 (536)
                      .+.+..+..+..+++|+.|++++|.+.+......                    ..++|+.+++++|.+.+..+.   ..
T Consensus       269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~---~~  345 (570)
T 2z63_A          269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VD  345 (570)
T ss_dssp             EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC---CB
T ss_pred             hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc---cc
Confidence            1112222334444555555555555543222222                    333444444444443322221   45


Q ss_pred             CCCccEEEccCCcCCCcc--chhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC-ccccccchhh
Q 045598          238 CSSLVTLDLSYNRLNGSI--SDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCFDNTTLHE  314 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~  314 (536)
                      +++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..     
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----  419 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS-----  419 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT-----
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc-----
Confidence            566666677666665433  45566667777777777766643333 6666777777777776665444 22322     


Q ss_pred             hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-CCCcccccCCCCCCEEe
Q 045598          315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-GSIPSTFSNLKYVESLD  393 (536)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  393 (536)
                                             +++|++|++++|.+.+..|..+.++++|++|++++|.+. +..|..+..+++|++|+
T Consensus       420 -----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          420 -----------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             -----------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             -----------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence                                   689999999999999989999999999999999999997 56889999999999999


Q ss_pred             CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC
Q 045598          394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  454 (536)
Q Consensus       394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~  454 (536)
                      +++|++++..|..+..+++|+.|++++|++++..|..+..+++++.+++.+||+.|+|+..
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999888999999999999999999999998888889999999999999999999764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.2e-47  Score=398.63  Aligned_cols=418  Identities=18%  Similarity=0.207  Sum_probs=336.8

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcC------cc------cCChhH---------------------hhcC--
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNF------RG------HIPVEI---------------------ADVL--   45 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~------~~------~~p~~~---------------------~~~l--   45 (536)
                      .|+|+++++.|.+|..++++++|++|++++|.+      .+      .+|...                     ...+  
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            378899999999998999999999999988865      11      112111                     1000  


Q ss_pred             ----------------CCCcEEEcc--CCCCcccCCccCCCCCCCCEEEccCCcCccc-----------------cchhH
Q 045598           46 ----------------PSLYAFNNS--MNALDGSIPSSFGNMKFLQFLDLSNNHLTGE-----------------IPEHL   90 (536)
Q Consensus        46 ----------------~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~   90 (536)
                                      ..++.+.+.  .|.+++ +|.+++++++|++|++++|.+++.                 +|..+
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                            011111111  457777 888999999999999999999854                 88776


Q ss_pred             hh--CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCc-Ccc-cCCcCCCCC------CccCeeecccCcCCCCCC
Q 045598           91 AV--GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR-FVG-EIPQSLSKC------SSLEGLYLNNNSLSGKIP  160 (536)
Q Consensus        91 ~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~  160 (536)
                       +  ++++|++|++++|.+.+..+..+.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.+. .+|
T Consensus       244 -~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip  321 (636)
T 4eco_A          244 -KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP  321 (636)
T ss_dssp             -CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred             -hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence             5  79999999999999998889999999999999999998 887 677777665      89999999999998 788


Q ss_pred             c--ccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCC-ccEEEccCCCCCCcccccccCC
Q 045598          161 R--WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFN  237 (536)
Q Consensus       161 ~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~  237 (536)
                      .  .+..+++|++|++++|.+.+..| .+..+++|+.|++++|++...+.....+.+ |+.|++++|.+. .++.. +..
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~  398 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDA  398 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCT
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhh
Confidence            7  89999999999999999987777 888899999999999999855545457777 999999999987 66654 555


Q ss_pred             C--CCccEEEccCCcCCCccchhhh-------CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598          238 C--SSLVTLDLSYNRLNGSISDWVD-------GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD  308 (536)
Q Consensus       238 ~--~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  308 (536)
                      .  ++|++|++++|.+.+..|..+.       .+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+.
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence            4  4899999999999988888777       778999999999999954445566789999999999999854444433


Q ss_pred             ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccccc--CCCCCCEEeCCCccCCCCCcccccCC
Q 045598          309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG--NLTRIQTLNLSHNNLTGSIPSTFSNL  386 (536)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l  386 (536)
                      ...                     .....+++|++|++++|.++ .+|..+.  .+++|++|+|++|++++ +|..+..+
T Consensus       479 ~~~---------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l  535 (636)
T 4eco_A          479 DEN---------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS  535 (636)
T ss_dssp             ETT---------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred             ccc---------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence            210                     00011348999999999999 6777776  89999999999999997 78889999


Q ss_pred             CCCCEEeC------CCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598          387 KYVESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       387 ~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      ++|++|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++++.+++++||+.|-
T Consensus       536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            99999999      56778889999999999999999999999 57787654  7999999999999873

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.7e-45  Score=382.60  Aligned_cols=434  Identities=19%  Similarity=0.175  Sum_probs=292.8

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      +|.++.+++ .+|..+.  +.+++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus        17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            455556665 5666553  57999999999999555555554 8999999999999999889999999999999999999


Q ss_pred             CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCc
Q 045598           82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR  161 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  161 (536)
                      ++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+.
T Consensus        93 l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           93 LI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cc-ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            98 44444458999999999999999988788899999999999999999875545566699999999999999977778


Q ss_pred             ccCCCCCCC--eEEccCCccccCCcccccCC-------------------------------------------------
Q 045598          162 WLGNLTRLQ--CIIMPNNHLEGPIPVEFCQL-------------------------------------------------  190 (536)
Q Consensus       162 ~~~~l~~L~--~L~l~~n~~~~~~~~~~~~l-------------------------------------------------  190 (536)
                      .++.+++|+  +|++++|.+.+..+..+...                                                 
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l  251 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL  251 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence            888899998  88888888776555443221                                                 


Q ss_pred             --CCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccE
Q 045598          191 --DLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSH  267 (536)
Q Consensus       191 --~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  267 (536)
                        .+|+.|++++|.+.+..+..+ .+++|+.|++++|.+. .++.. +..+++|++|++++|.+.+..+..+..+++|+.
T Consensus       252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  329 (606)
T 3t6q_A          252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTH  329 (606)
T ss_dssp             GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred             hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence              045666666666666555544 4567777777777664 44444 666677777777777776665666666777777


Q ss_pred             EEcccccccccccc-cccCCCCCCEEecCCCcCCCCC--CccccccchhhhccccceeEEeeccceeeecc--ccccccc
Q 045598          268 LILGHNNLEGEVPI-QLCELNQLQLLDLSNNNLHGPI--PSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLS  342 (536)
Q Consensus       268 L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~  342 (536)
                      |++++|.+.+.++. .+..+++|++|++++|.+++..  +..+......      ..+.+..+.+......  ..+++|+
T Consensus       330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L------~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL------QSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC------CEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC------CEEECCCCcCCcCCHHHhcCCccCC
Confidence            77777766544433 3666667777777766665443  3333322211      1122222222222111  2245566


Q ss_pred             eEEccCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc---CchhhhCCCCCCEEEc
Q 045598          343 GLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK---IPHQLVELKTLEVFSV  418 (536)
Q Consensus       343 ~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l  418 (536)
                      +|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.   .+..+..+++|+.|++
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            666666665544432 355566666666666666655555566666666666666665541   2244555666666666


Q ss_pred             cCCcCcccCCCCccccccCCccccccCcCC
Q 045598          419 AYNNLSGEIPEWTAQFATFNESSYEGNTFL  448 (536)
Q Consensus       419 ~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~  448 (536)
                      ++|++++..|..+..+++++.+++++|...
T Consensus       484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCccChhhhccccCCCEEECCCCccC
Confidence            666666655555555666666666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-44  Score=386.03  Aligned_cols=446  Identities=21%  Similarity=0.214  Sum_probs=289.3

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|++++..+..+.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+.+|+++++|++|++++|
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCccCccChhhhccCCCCCEEECCCC
Confidence            4788899888777777888899999999999888555555554 889999999999888666667889999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCC--CCCccCeeecccCcCCCC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLS--KCSSLEGLYLNNNSLSGK  158 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~l~~n~~~~~  158 (536)
                      .++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.  .+++|+.|++++|.+.+.
T Consensus       108 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  186 (680)
T 1ziw_A          108 SIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF  186 (680)
T ss_dssp             CCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred             ccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence            887 66655557888999999999988887777788888888888888877755444332  345666666666665544


Q ss_pred             CCcc---------------------------------------------------cCCCC--CCCeEEccCCccccCCcc
Q 045598          159 IPRW---------------------------------------------------LGNLT--RLQCIIMPNNHLEGPIPV  185 (536)
Q Consensus       159 ~~~~---------------------------------------------------~~~l~--~L~~L~l~~n~~~~~~~~  185 (536)
                      .+..                                                   +..++  +|++|++++|.+.+..+.
T Consensus       187 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~  266 (680)
T 1ziw_A          187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND  266 (680)
T ss_dssp             CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred             ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence            4332                                                   22232  266666666666655556


Q ss_pred             cccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCC--------cccccccCCCCCccEEEccCCcCCCccc
Q 045598          186 EFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHG--------QLKRGTFFNCSSLVTLDLSYNRLNGSIS  256 (536)
Q Consensus       186 ~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~~  256 (536)
                      .|..+++|+.|++++|.+.+..+..+ .+.+|+.+++++|...+        .+....|..+++|++|++++|.+.+..+
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~  346 (680)
T 1ziw_A          267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS  346 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred             cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence            66666666666666666665544333 33444444444332211        1111134555666666666666655555


Q ss_pred             hhhhCCCCccEEEc----------------------------ccccccccccccccCCCCCCEEecCCCcCCCCCC-ccc
Q 045598          257 DWVDGLSQLSHLIL----------------------------GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP-SCF  307 (536)
Q Consensus       257 ~~~~~l~~L~~L~L----------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~  307 (536)
                      ..+..+++|++|++                            ++|.+++..+..|..+++|+.|++++|.+.+..+ ..+
T Consensus       347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  426 (680)
T 1ziw_A          347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW  426 (680)
T ss_dssp             TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred             hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence            55555444444444                            4444454556667777788888888877765443 344


Q ss_pred             cccchhhhcccc------------------ceeEEeeccce---eee-ccccccccceEEccCCcCcCCCcccccCCCCC
Q 045598          308 DNTTLHEKKQIR------------------EKFEFTTKNIA---YIY-QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI  365 (536)
Q Consensus       308 ~~~~~~~~~~~~------------------~~~~~~~~~~~---~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  365 (536)
                      ..........+.                  ..+.+..+.+.   ..+ ....+++|++|++++|.+++..+..|.++++|
T Consensus       427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  506 (680)
T 1ziw_A          427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL  506 (680)
T ss_dssp             TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence            333221111111                  11111111111   111 11335678888888888877777777788888


Q ss_pred             CEEeCCCccCCCCCc--------ccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccC
Q 045598          366 QTLNLSHNNLTGSIP--------STFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF  437 (536)
Q Consensus       366 ~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  437 (536)
                      ++|++++|++++..+        ..|.++++|++|+|++|+++.+.+..|.++++|+.|++++|++++..+..+..++++
T Consensus       507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  586 (680)
T 1ziw_A          507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL  586 (680)
T ss_dssp             CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence            888888887775322        236777888888888888875555667888888888888888887666666777888


Q ss_pred             CccccccCcCC
Q 045598          438 NESSYEGNTFL  448 (536)
Q Consensus       438 ~~l~l~~n~~~  448 (536)
                      +.+++.+|...
T Consensus       587 ~~L~L~~N~l~  597 (680)
T 1ziw_A          587 KSLNLQKNLIT  597 (680)
T ss_dssp             CEEECTTSCCC
T ss_pred             CEEECCCCcCC
Confidence            88888887543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-45  Score=393.79  Aligned_cols=409  Identities=20%  Similarity=0.241  Sum_probs=204.2

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEc-cCCcCccc-------------------------------------------
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDI-SNNNFRGH-------------------------------------------   36 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l-s~~~~~~~-------------------------------------------   36 (536)
                      .|+|+++++.|.+|..++++++|++|+| ++|.+.|.                                           
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            3899999999999999999999999999 77765544                                           


Q ss_pred             ---------------------------------CChhHhhcCCCCcEEEccCCCCcc-----------------cCCccC
Q 045598           37 ---------------------------------IPVEIADVLPSLYAFNNSMNALDG-----------------SIPSSF   66 (536)
Q Consensus        37 ---------------------------------~p~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~   66 (536)
                                                       +|..+.. +++|+.|++++|.+++                 .+|..+
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l  485 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL  485 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence                                             3433333 4455555555555554                 144444


Q ss_pred             C--CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCc-cCc-cCCcccc-------CCCCCCEEEccCCcCcccC
Q 045598           67 G--NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN-LQG-HMFSRNF-------NLTNLKWLQLEGSRFVGEI  135 (536)
Q Consensus        67 ~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~i~~~~  135 (536)
                      +  ++++|++|++++|.+.+.+|..+ +.+++|++|++++|. +++ ..|..+.       .+++|++|++++|.+. .+
T Consensus       486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          486 SWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             CGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             hhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            4  55555555555555444555333 445555555555554 443 2332222       2335555555555555 34


Q ss_pred             Cc--CCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCC-CCEEEccCCcCcccCCCCCC
Q 045598          136 PQ--SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL-LQILDISDNNISGSLPSCFH  212 (536)
Q Consensus       136 ~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~  212 (536)
                      |.  .+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+. ..|..+..+++ |+.|++++|.+. ..|..+.
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~  639 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN  639 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence            44  4555555555555555554 344 4555555555555555554 34444445554 555555555554 2222221


Q ss_pred             -C--CCccEEEccCCCCCCcccccc--cC--CCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccC
Q 045598          213 -P--LSIKQVHLSKNMLHGQLKRGT--FF--NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE  285 (536)
Q Consensus       213 -~--~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  285 (536)
                       .  .+|+.|++++|.+.+.++...  +.  .+++|+.|++++|.+....+..+..+++|+.|++++|.++ .+|..+..
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~  718 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK  718 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc
Confidence             1  225555555555544332110  11  2234555555555555322233334555555555555554 23322211


Q ss_pred             --------CCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcc
Q 045598          286 --------LNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPL  357 (536)
Q Consensus       286 --------l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  357 (536)
                              +++|+.|++++|+++ .+|..+..                          ..+++|+.|++++|.+++ +|.
T Consensus       719 ~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------------~~l~~L~~L~Ls~N~L~~-lp~  770 (876)
T 4ecn_A          719 PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------------TTLPYLSNMDVSYNCFSS-FPT  770 (876)
T ss_dssp             CTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------TTCTTCCEEECCSSCCSS-CCC
T ss_pred             cccccccccCCccEEECCCCCCc-cchHHhhh--------------------------ccCCCcCEEEeCCCCCCc-cch
Confidence                    114555555555554 22322220                          013455555555555554 444


Q ss_pred             cccCCCCCCEEeCCC------ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCc
Q 045598          358 QIGNLTRIQTLNLSH------NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWT  431 (536)
Q Consensus       358 ~~~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  431 (536)
                      .+..+++|+.|+|++      |++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|++++|++....+..+
T Consensus       771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            555555555555543      444445555555555555555555555 24444332  355555555555554444444


Q ss_pred             cccccCCccccccCcCC
Q 045598          432 AQFATFNESSYEGNTFL  448 (536)
Q Consensus       432 ~~~~~l~~l~l~~n~~~  448 (536)
                      +.........+.+|++.
T Consensus       848 ~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          848 CPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             HHHHHTTCCEEECCTTS
T ss_pred             cccccchheeecCCCcc
Confidence            44333444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-44  Score=381.68  Aligned_cols=428  Identities=18%  Similarity=0.115  Sum_probs=344.6

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH   81 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~   81 (536)
                      ++.++++++ .+|..+  .+++++|++++|.+++..+..+ ..+++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus        16 ~~c~~~~l~-~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~   91 (606)
T 3vq2_A           16 YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP   91 (606)
T ss_dssp             EECTTSCCS-SCCTTS--CTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEccCCCcc-cCCCCC--CCCcCEEECCCCCcCEeChhhc-cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence            566777776 667655  3889999999999994444444 458999999999999998889999999999999999999


Q ss_pred             CccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcc-cCCcCCCCCCccCeeecccCcCCCCCC
Q 045598           82 LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIP  160 (536)
Q Consensus        82 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~  160 (536)
                      ++ .++...++++++|++|++++|.+++..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+..+
T Consensus        92 l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           92 IQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            99 5543444899999999999999998888889999999999999999986 458899999999999999999987777


Q ss_pred             cccCCCCCCC----eEEccCCccccCCccccc------------------------------------------------
Q 045598          161 RWLGNLTRLQ----CIIMPNNHLEGPIPVEFC------------------------------------------------  188 (536)
Q Consensus       161 ~~~~~l~~L~----~L~l~~n~~~~~~~~~~~------------------------------------------------  188 (536)
                      ..++.+++|+    ++++++|.+.+..+..+.                                                
T Consensus       171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~  250 (606)
T 3vq2_A          171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF  250 (606)
T ss_dssp             TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence            7776666554    677777766644443333                                                


Q ss_pred             --------------------------------CCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccC
Q 045598          189 --------------------------------QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF  236 (536)
Q Consensus       189 --------------------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  236 (536)
                                                      .+++|+.|++++|.+... +......+|+.|++++|.+ +.++.  + 
T Consensus       251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l-~~lp~--~-  325 (606)
T 3vq2_A          251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQL-KQFPT--L-  325 (606)
T ss_dssp             CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCC-SSCCC--C-
T ss_pred             ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh-hhccccccCCEEEcccccC-ccccc--C-
Confidence                                            234455555555555432 2334567899999999999 67773  5 


Q ss_pred             CCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccc--ccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598          237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGE--VPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE  314 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  314 (536)
                      .+++|++|++++|...+..  .+..+++|+.|++++|.+++.  .+..+..+++|++|++++|.+++.. ..+.......
T Consensus       326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~  402 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQ  402 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCC
T ss_pred             CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCC
Confidence            8999999999999655433  566899999999999999865  3788999999999999999988643 4454433222


Q ss_pred             hccccceeEEeeccceeee---ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC-CCcccccCCCCCC
Q 045598          315 KKQIREKFEFTTKNIAYIY---QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVE  390 (536)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  390 (536)
                            .+.+..+.+....   ....+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|+
T Consensus       403 ------~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          403 ------HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             ------EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ------eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence                  2222222222221   12347899999999999999899999999999999999999997 4788999999999


Q ss_pred             EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCC
Q 045598          391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL  448 (536)
Q Consensus       391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~  448 (536)
                      +|++++|++++..|..+..+++|+.|++++|++++..|..+..+++++.+++.+|...
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            9999999999888999999999999999999999998999989999999999999865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=393.48  Aligned_cols=415  Identities=21%  Similarity=0.210  Sum_probs=297.1

Q ss_pred             CEEeccccccccC-CCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCcc--CCCCCCCCEEEc
Q 045598            1 TLSLVNDSLGGPF-RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSS--FGNMKFLQFLDL   77 (536)
Q Consensus         1 ~L~L~~~~~~~~~-~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L   77 (536)
                      +|||++|...+.+ |..+.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..  |.++++|++|++
T Consensus        52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L  130 (844)
T 3j0a_A           52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL  130 (844)
T ss_dssp             EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred             EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence            4899999777666 778999999999999999999666666665 889999999999998766654  999999999999


Q ss_pred             cCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCC--CCCCEEEccCCcCcccCCcCCCCCCc------cCeee
Q 045598           78 SNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNL--TNLKWLQLEGSRFVGEIPQSLSKCSS------LEGLY  149 (536)
Q Consensus        78 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~  149 (536)
                      ++|.+++..+...++++++|++|++++|.+++..+..+..+  ++|+.|++++|.+.+..+..+..+++      |+.|+
T Consensus       131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~  210 (844)
T 3j0a_A          131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD  210 (844)
T ss_dssp             ESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEB
T ss_pred             CCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEe
Confidence            99999855454556899999999999999988777777665  77777777777777666655555444      77777


Q ss_pred             cccCcCCCCCCcccC------------------------------------C--CCCCCeEEccCCccccCCcccccCCC
Q 045598          150 LNNNSLSGKIPRWLG------------------------------------N--LTRLQCIIMPNNHLEGPIPVEFCQLD  191 (536)
Q Consensus       150 l~~n~~~~~~~~~~~------------------------------------~--l~~L~~L~l~~n~~~~~~~~~~~~l~  191 (536)
                      +++|.+.+..+..+.                                    .  .++|++|++++|.+.+..+..|..++
T Consensus       211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~  290 (844)
T 3j0a_A          211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK  290 (844)
T ss_dssp             CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC
T ss_pred             cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC
Confidence            777655433332221                                    1  14566777777766666666666677


Q ss_pred             CCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEc
Q 045598          192 LLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLIL  270 (536)
Q Consensus       192 ~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  270 (536)
                      +|+.|++++|.+.+..+..+ .+.+|+.|++++|.+.+. .+..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus       291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence            77777777777766655544 456677777777766433 2333666677777777777666555556666666666666


Q ss_pred             cccccccc------------------cc----------------------ccccCCCCCCEEecCCCcCCCCCCcc-ccc
Q 045598          271 GHNNLEGE------------------VP----------------------IQLCELNQLQLLDLSNNNLHGPIPSC-FDN  309 (536)
Q Consensus       271 ~~n~l~~~------------------~~----------------------~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~  309 (536)
                      ++|.+++.                  +|                      ..+..+++|+.|++++|++++..+.. +..
T Consensus       370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  449 (844)
T 3j0a_A          370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE  449 (844)
T ss_dssp             ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred             CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence            66665421                  11                      11335677777777777776544331 111


Q ss_pred             cchhhhccccceeEEeeccceeee-------ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccc
Q 045598          310 TTLHEKKQIREKFEFTTKNIAYIY-------QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPST  382 (536)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  382 (536)
                      .      .....+.+..+.+....       ....+++|++|++++|.+++..|..|.++++|++|+|++|++++..+..
T Consensus       450 ~------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  523 (844)
T 3j0a_A          450 N------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND  523 (844)
T ss_dssp             C------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred             C------CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence            1      11223334433332111       1134689999999999999999999999999999999999999877777


Q ss_pred             ccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCC
Q 045598          383 FSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       383 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      +.  ++|+.|+|++|++++..|..+   .+|+.|++++|++.+..+
T Consensus       524 ~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          524 LP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             hh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            66  899999999999998888765   579999999999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.6e-44  Score=373.78  Aligned_cols=430  Identities=18%  Similarity=0.157  Sum_probs=285.4

Q ss_pred             EeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcC
Q 045598            3 SLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHL   82 (536)
Q Consensus         3 ~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l   82 (536)
                      |.+++.++ .+|..+.  ++|++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.+
T Consensus        11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            55666665 5665543  78888888888888555555544 78888888888888887778888888888888888888


Q ss_pred             ccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCc-CcccCCcCCCCCCccCeeecccCcCCCCCC
Q 045598           83 TGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSR-FVGEIPQSLSKCSSLEGLYLNNNSLSGKIP  160 (536)
Q Consensus        83 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  160 (536)
                      + .++...++++++|++|++++|.+++. .+..+.++++|++|++++|. +....+..+.++++|++|++++|.+.+..|
T Consensus        87 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             C-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             C-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            8 56666557888888888888888763 34677888888888888887 443444678888888888888888887777


Q ss_pred             cccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCC---C-CCCCCCccEEEccCCCCC---------
Q 045598          161 RWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLP---S-CFHPLSIKQVHLSKNMLH---------  227 (536)
Q Consensus       161 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~-~~~~~~L~~L~l~~n~~~---------  227 (536)
                      ..+..+++|++|+++.|.+.......+..+++|+.|++++|++.+...   . .....+|+.|++.+|.+.         
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  245 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK  245 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred             hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence            788888888888887777654333334557777777777777765321   0 011223333333332221         


Q ss_pred             -------------------Cccc--------------------------c--------cccCCCCCccEEEccCCcCCCc
Q 045598          228 -------------------GQLK--------------------------R--------GTFFNCSSLVTLDLSYNRLNGS  254 (536)
Q Consensus       228 -------------------~~~~--------------------------~--------~~~~~~~~L~~L~L~~n~l~~~  254 (536)
                                         +...                          .        ..+...++|+.|++++|.+...
T Consensus       246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i  325 (549)
T 2z81_A          246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV  325 (549)
T ss_dssp             GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred             HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence                               1000                          0        0001123566666666666532


Q ss_pred             cchhhhCCCCccEEEccccccccccc---ccccCCCCCCEEecCCCcCCCCCC--ccccccchhhhccccceeEEeeccc
Q 045598          255 ISDWVDGLSQLSHLILGHNNLEGEVP---IQLCELNQLQLLDLSNNNLHGPIP--SCFDNTTLHEKKQIREKFEFTTKNI  329 (536)
Q Consensus       255 ~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  329 (536)
                      ....+..+++|++|++++|.+++..|   ..+..+++|++|++++|++++..+  ..+....      ....+.+..+.+
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l  399 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK------NLTSLDISRNTF  399 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT------TCCEEECTTCCC
T ss_pred             CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC------CCCEEECCCCCC
Confidence            22223456666666666666665443   225556666666666666654321  1121111      011122222222


Q ss_pred             eeeec-cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598          330 AYIYQ-GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV  408 (536)
Q Consensus       330 ~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  408 (536)
                      ..++. ...+++|++|++++|.++. +|..+.  ++|++|++++|++++.    ...+++|++|+|++|+++ .+|. ..
T Consensus       400 ~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          400 HPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             CCCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             ccCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence            22221 1225678888888888763 333332  5788888888888754    257899999999999998 5665 46


Q ss_pred             CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      .+++|+.|++++|++++..|..+..+++++.+++.+|||.|+|+
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            79999999999999999999989999999999999999999997

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.6e-45  Score=377.78  Aligned_cols=428  Identities=20%  Similarity=0.208  Sum_probs=301.1

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +||+++|+++ .+|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            4899999998 6787665  89999999999999 455444445899999999999999888999999999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCcc-CCccccCCCCCCEEEccCCcCcccCCcCCCCCCcc--CeeecccCcC--
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL--EGLYLNNNSL--  155 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~~--  155 (536)
                      +++ .+|..   .+++|++|++++|.+++. .+..+.++++|++|++++|.+.+   ..+..+++|  +.|++++|.+  
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            999 88876   799999999999999874 56889999999999999999875   356777777  9999999988  


Q ss_pred             CCCCCcccCC--------------------------CCCCCeEEccCCc-------cccCCcccccCCCCCCEEEccCCc
Q 045598          156 SGKIPRWLGN--------------------------LTRLQCIIMPNNH-------LEGPIPVEFCQLDLLQILDISDNN  202 (536)
Q Consensus       156 ~~~~~~~~~~--------------------------l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~  202 (536)
                      .+..|..+..                          +++|+.+++++|.       +.+..+ .+..+++|+.|++++|.
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            5556655554                          4555666666554       332222 45556666666665555


Q ss_pred             CcccCCCC----CCCCCccEEEccCCCCCCccccccc----CCCCCccEEEccCCcCCCccc-hhhhCC---CCccEEEc
Q 045598          203 ISGSLPSC----FHPLSIKQVHLSKNMLHGQLKRGTF----FNCSSLVTLDLSYNRLNGSIS-DWVDGL---SQLSHLIL  270 (536)
Q Consensus       203 ~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L  270 (536)
                      +.+.....    ....+|+.|++++|.+.+.++...+    ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence            44321110    1134677777777776666665522    5666666666666665  222 222222   33444444


Q ss_pred             ccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeec----cccccccceEEc
Q 045598          271 GHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ----GKVLSLLSGLDL  346 (536)
Q Consensus       271 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~~L~l  346 (536)
                      ++|.+....  .+..+++|++|++++|.+++..|..+......      ..+.+..+.+..++.    ...+++|++|++
T Consensus       310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL------ETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC------CEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC------CEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            444443211  01334444444444444444444333322111      111122222211110    123789999999


Q ss_pred             cCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598          347 SCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       347 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ++|.+.+.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence            99999985554 588899999999999999877776654  79999999999999 777777799999999999999995


Q ss_pred             cCCCCccccccCCccccccCcCCCCCCC
Q 045598          426 EIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       426 ~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      ..+..+..+++++.+++.+||+.|+|+.
T Consensus       459 l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          459 VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            4444477899999999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-43  Score=376.69  Aligned_cols=437  Identities=20%  Similarity=0.189  Sum_probs=292.4

Q ss_pred             CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEE
Q 045598           21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL  100 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  100 (536)
                      +++++|||++|+++ .+|...+..+++|++|+|++|.+++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            35666666666666 444443344666666666666666655566666666666666666666 5565555666666666


Q ss_pred             EcccCccCccCCccccCCCCCCEEEccCCcCccc-CCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCC----eEEcc
Q 045598          101 ALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ----CIIMP  175 (536)
Q Consensus       101 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~  175 (536)
                      ++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..+..+..+.+++    .++++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            6666666665555666666666666666666542 345556666666666666665544333332221111    11111


Q ss_pred             CCccccC-------------------------------------------------------------------------
Q 045598          176 NNHLEGP-------------------------------------------------------------------------  182 (536)
Q Consensus       176 ~n~~~~~-------------------------------------------------------------------------  182 (536)
                      .|.+...                                                                         
T Consensus       210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            1111100                                                                         


Q ss_pred             ------------------------------CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccc
Q 045598          183 ------------------------------IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR  232 (536)
Q Consensus       183 ------------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  232 (536)
                                                    ....+....+++.|++.+|.+.....  .....++.+.+..|....... 
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~~-  366 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS-  366 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEEEESCCSCCBCC-
T ss_pred             hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc--ccchhhhhcccccccCCCCcc-
Confidence                                          00112334456777777776654333  245678888888877643322 


Q ss_pred             cccCCCCCccEEEccCCcCCC--ccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCc-cccc
Q 045598          233 GTFFNCSSLVTLDLSYNRLNG--SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDN  309 (536)
Q Consensus       233 ~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~  309 (536)
                        ...+++|+.+++++|.+..  ..+..+..+.+|+.+++..+... ..+..+..+++|+.++++.+......+. .+..
T Consensus       367 --~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~  443 (635)
T 4g8a_A          367 --EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  443 (635)
T ss_dssp             --CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred             --cccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccc
Confidence              4567888999999888753  33455666778888888888776 3445567778888888877765544332 2222


Q ss_pred             cchhhhccccceeEEeeccceeeecc--ccccccceEEccCCcC-cCCCcccccCCCCCCEEeCCCccCCCCCcccccCC
Q 045598          310 TTLHEKKQIREKFEFTTKNIAYIYQG--KVLSLLSGLDLSCNKL-IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL  386 (536)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  386 (536)
                      ...      ........+.+.....+  ..++.+++|++++|.+ .+..|..|..+++|++|+|++|++++..|..|.++
T Consensus       444 l~~------l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l  517 (635)
T 4g8a_A          444 LRN------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  517 (635)
T ss_dssp             CTT------CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ccc------cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence            111      11122222222222211  3368899999999975 44578899999999999999999999999999999


Q ss_pred             CCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc-ccCCccccccCcCCCCCCCC-----------
Q 045598          387 KYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPLP-----------  454 (536)
Q Consensus       387 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~~~l~-----------  454 (536)
                      ++|++|+|++|+++++.+..|.++++|+.|++++|++++..|..+..+ ++++.+++++|||.|+|++.           
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~  597 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ  597 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999988887 68999999999999999753           


Q ss_pred             --------CCCCCCCCCcccCCCCc
Q 045598          455 --------ICRSPATMSEASIGNER  471 (536)
Q Consensus       455 --------~C~~~~~~~~~~~~~~~  471 (536)
                              .|..|...+|+++..++
T Consensus       598 ~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          598 LLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             TBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             ccCCCCCceeCCchHHCCCEeeeec
Confidence                    59999999998877664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.5e-43  Score=356.17  Aligned_cols=381  Identities=22%  Similarity=0.235  Sum_probs=278.6

Q ss_pred             cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598           23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL  102 (536)
Q Consensus        23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  102 (536)
                      -+.++.++++++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            457888888888 7886 3   3689999999999998888999999999999999999876777777788999999999


Q ss_pred             ccCccCccCCccccCCCCCCEEEccCCcCcccCCc--CCCCCCccCeeecccCcCCCCCCcc-cCCCCCCCeEEccCCcc
Q 045598          103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~  179 (536)
                      ++|.+++..+..+.++++|++|++++|.+.+..+.  .+.++++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99999988888999999999999999998864443  4888999999999999998776765 78899999999999998


Q ss_pred             ccCCcccccCC--CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch
Q 045598          180 EGPIPVEFCQL--DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD  257 (536)
Q Consensus       180 ~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  257 (536)
                      .+..+..+..+  .+|+.|++++|.+.+..+.....               .. ...+..+++|++|++++|.+.+..+.
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EK-CGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HH-HCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccc---------------cc-cccccccceeeeEecCCCcccccchh
Confidence            88777777655  67888888888877554332210               00 00122334555555555555544444


Q ss_pred             hhhCC---CCccEEEccccccccc----------cccccc--CCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598          258 WVDGL---SQLSHLILGHNNLEGE----------VPIQLC--ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF  322 (536)
Q Consensus       258 ~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  322 (536)
                      .+...   ++|+.|++++|...+.          .+..+.  ..++|+.|++++|.+++..|..+..             
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------------  297 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-------------  297 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-------------
T ss_pred             hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-------------
Confidence            43332   4555555555533221          111111  2356777777777777666665544             


Q ss_pred             EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598          323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK  402 (536)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  402 (536)
                                     +++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus       298 ---------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  362 (455)
T 3v47_A          298 ---------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL  362 (455)
T ss_dssp             ---------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred             ---------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence                           55777777777777766677777777777777777777766677777777777777777777777


Q ss_pred             CchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          403 IPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      .|..+..+++|+.|++++|++++..+..+..+++++.+++++||+.|+|+
T Consensus       363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            77777777777777777777776666666677777777777777777776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8.7e-43  Score=373.31  Aligned_cols=396  Identities=18%  Similarity=0.224  Sum_probs=323.6

Q ss_pred             CCcCEEEccCCcCcccCChhHhhcCCCCcEEEc-cCCCCccc--------------------------------------
Q 045598           21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNN-SMNALDGS--------------------------------------   61 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l-~~n~~~~~--------------------------------------   61 (536)
                      .+++.|+|+++++.|.+|..+.. +++|+.|+| +.|.++|.                                      
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            57999999999999999998887 899999999 66644332                                      


Q ss_pred             --------------------------------------CCccCCCCCCCCEEEccCCcCcc-----------------cc
Q 045598           62 --------------------------------------IPSSFGNMKFLQFLDLSNNHLTG-----------------EI   86 (536)
Q Consensus        62 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~   86 (536)
                                                            +|..|+++++|++|+|++|.+++                 .+
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                                  67788999999999999999985                 28


Q ss_pred             chhH-hhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCc-Ccc-cCCcCCC-------CCCccCeeecccCcCC
Q 045598           87 PEHL-AVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSR-FVG-EIPQSLS-------KCSSLEGLYLNNNSLS  156 (536)
Q Consensus        87 ~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L~~L~l~~n~~~  156 (536)
                      |..+ |.++++|++|+|++|.+.+..|..+.++++|++|++++|+ +++ .+|..+.       .+++|+.|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            8776 3489999999999999888888889999999999999998 776 5665444       4459999999999998


Q ss_pred             CCCCc--ccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCC-ccEEEccCCCCCCccccc
Q 045598          157 GKIPR--WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRG  233 (536)
Q Consensus       157 ~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~  233 (536)
                       .+|.  .+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+...+.....+.+ |+.|++++|.+. .++..
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence             7787  8999999999999999998 556 888999999999999999844444456777 999999999986 56543


Q ss_pred             ccCCCC--CccEEEccCCcCCCccchhh---h--CCCCccEEEccccccccccccc-ccCCCCCCEEecCCCcCCCCCCc
Q 045598          234 TFFNCS--SLVTLDLSYNRLNGSISDWV---D--GLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHGPIPS  305 (536)
Q Consensus       234 ~~~~~~--~L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~  305 (536)
                       +...+  +|+.|++++|.+.+.+|...   .  .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++..++.
T Consensus       638 -~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          638 -FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             -CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             -hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence             55554  49999999999987655432   2  2458999999999998 45544 55889999999999998844443


Q ss_pred             cccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccccc--CCCCCCEEeCCCccCCCCCcccc
Q 045598          306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG--NLTRIQTLNLSHNNLTGSIPSTF  383 (536)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~  383 (536)
                      .+....                     +....+++|++|++++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+
T Consensus       716 ~~~~~~---------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          716 SLKPKD---------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             SSSCTT---------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             Hhcccc---------------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence            332210                     00011458999999999999 6777776  89999999999999997 68889


Q ss_pred             cCCCCCCEEeCCC------CcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCC
Q 045598          384 SNLKYVESLDLSN------NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       384 ~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      ..+++|+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|..+.  ++++.+++++|++..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            9999999999976      788889999999999999999999999 67888754  699999999999764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=363.77  Aligned_cols=393  Identities=22%  Similarity=0.251  Sum_probs=317.8

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+.+..+..+.++++|++|++++|.++ .+|...+..+++|++|++++|.+++..+..++++++|++|++++|
T Consensus        56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  134 (570)
T 2z63_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  134 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC
Confidence            4899999999888888999999999999999998 455444445899999999999998766667999999999999999


Q ss_pred             cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCC----CEEEccCCcCcccCCcCC----------------
Q 045598           81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL----KWLQLEGSRFVGEIPQSL----------------  139 (536)
Q Consensus        81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~----------------  139 (536)
                      .+++ .+|..+ +++++|++|++++|.++...+..+..+++|    +.|++++|.+.+..+..+                
T Consensus       135 ~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~  213 (570)
T 2z63_A          135 LIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS  213 (570)
T ss_dssp             CCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred             ccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccc
Confidence            9884 357665 789999999999999988777777766666    677777776665444433                


Q ss_pred             -----------------------------------------------------------------CCCCccCeeecccCc
Q 045598          140 -----------------------------------------------------------------SKCSSLEGLYLNNNS  154 (536)
Q Consensus       140 -----------------------------------------------------------------~~l~~L~~L~l~~n~  154 (536)
                                                                                       ..+++|+.|++++|.
T Consensus       214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  293 (570)
T 2z63_A          214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT  293 (570)
T ss_dssp             TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred             ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence                                                                             334555555555555


Q ss_pred             CCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccc-cc
Q 045598          155 LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK-RG  233 (536)
Q Consensus       155 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~  233 (536)
                      +. .+|..+..+ +|++|++++|.+.. .|.  ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... +.
T Consensus       294 l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~  367 (570)
T 2z63_A          294 IE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ  367 (570)
T ss_dssp             EC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred             ch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccc
Confidence            54 344445555 66666666665552 222  3566777777777776655444 567899999999999864321 23


Q ss_pred             ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccch
Q 045598          234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL  312 (536)
Q Consensus       234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  312 (536)
                      .+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..   
T Consensus       368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---  443 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---  443 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT---
T ss_pred             cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc---
Confidence            377899999999999999865555 8899999999999999987665 56889999999999999999888877765   


Q ss_pred             hhhccccceeEEeeccceeeeccccccccceEEccCCcCc-CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCE
Q 045598          313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVES  391 (536)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  391 (536)
                                               +++|++|++++|.+. +..|..+..+++|++|++++|++++..|..|..+++|++
T Consensus       444 -------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          444 -------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             -------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             -------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence                                     679999999999997 578899999999999999999999888999999999999


Q ss_pred             EeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCC
Q 045598          392 LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW  430 (536)
Q Consensus       392 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  430 (536)
                      |++++|++++..+..+..+++|+.|++++|++++..|..
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999999999888888999999999999999999987753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.1e-42  Score=360.75  Aligned_cols=409  Identities=23%  Similarity=0.216  Sum_probs=289.1

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      ++|+++|++++ +|..+.  ++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            37888888874 676553  78999999999988 455444445889999999999998888888999999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccC-CccccCCCCCCEEEccCCcCcccCCcCCCCCCcc--CeeecccCcC--
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHM-FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL--EGLYLNNNSL--  155 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~~--  155 (536)
                      +++ .+|..   .+++|++|++++|.+++.. +..+.++++|++|++++|.+...   .+..+++|  +.|++++|.+  
T Consensus       111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            988 78865   6889999999999988754 46888899999999999888753   34555555  8899988888  


Q ss_pred             CCCCCcccCCC--------------------------CCCCeEEccCCccc----cCCcccccCCCCCCEEEccCCcCcc
Q 045598          156 SGKIPRWLGNL--------------------------TRLQCIIMPNNHLE----GPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       156 ~~~~~~~~~~l--------------------------~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      .+..+..+..+                          ++|+.+++++|+..    ......+..+++|+.++++++.+.+
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            66666555443                          33444444443200    0001122233333333333322221


Q ss_pred             cC----CCCCCCCCccEEEccCCCCCCccccccc----CCC--------------------------CCccEEEccCCcC
Q 045598          206 SL----PSCFHPLSIKQVHLSKNMLHGQLKRGTF----FNC--------------------------SSLVTLDLSYNRL  251 (536)
Q Consensus       206 ~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~--------------------------~~L~~L~L~~n~l  251 (536)
                      ..    +......+|+.|++++|.+.+.++...|    ..+                          .+|++|++++|.+
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence            00    0011223666666666666555554422    222                          3466666666655


Q ss_pred             CCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCC--CccccccchhhhccccceeEEeeccc
Q 045598          252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPI--PSCFDNTTLHEKKQIREKFEFTTKNI  329 (536)
Q Consensus       252 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (536)
                      ....  ....+++|++|++++|.+++..|..+..+++|++|++++|++++..  |..+..                    
T Consensus       344 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------------------  401 (562)
T 3a79_B          344 IHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN--------------------  401 (562)
T ss_dssp             CCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--------------------
T ss_pred             cccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--------------------
Confidence            4221  1146778888888888888777777888888888888888777532  222322                    


Q ss_pred             eeeeccccccccceEEccCCcCcCCCc-ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598          330 AYIYQGKVLSLLSGLDLSCNKLIGPIP-LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV  408 (536)
Q Consensus       330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  408 (536)
                              +++|++|++++|.+++.+| ..+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+.
T Consensus       402 --------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~  470 (562)
T 3a79_B          402 --------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT  470 (562)
T ss_dssp             --------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT
T ss_pred             --------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc
Confidence                    6799999999999998444 5688999999999999999876665544  79999999999999 6666666


Q ss_pred             CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598          409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      .+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+.
T Consensus       471 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            999999999999999954444488899999999999999999865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-42  Score=364.54  Aligned_cols=392  Identities=19%  Similarity=0.268  Sum_probs=256.1

Q ss_pred             cccccccCCCCcCCCCCcCEEEccCCcCccc-----------------CChhHh-hcCCCCcEEEccCCCCcccCCccCC
Q 045598            6 NDSLGGPFRLPIHSHKRLGMLDISNNNFRGH-----------------IPVEIA-DVLPSLYAFNNSMNALDGSIPSSFG   67 (536)
Q Consensus         6 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~-----------------~p~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~   67 (536)
                      +|++++ +|..+.++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            455665 666666667777777776666653                 666555 1256666666666666666666666


Q ss_pred             CCCCCCEEEccCCc-Ccc-ccchhHhhCC------CCCCEEEcccCccCccCCc--cccCCCCCCEEEccCCcCcccCCc
Q 045598           68 NMKFLQFLDLSNNH-LTG-EIPEHLAVGC------VNLRFLALSNNNLQGHMFS--RNFNLTNLKWLQLEGSRFVGEIPQ  137 (536)
Q Consensus        68 ~l~~L~~L~L~~n~-l~~-~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~  137 (536)
                      ++++|++|++++|+ +++ .+|..+ +.+      ++|++|++++|.++ ..+.  .+.++++|++|++++|.+.+.+| 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             cCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            66666666666666 665 566555 233      66666666666666 3444  56666666666666666665555 


Q ss_pred             CCCCCCccCeeecccCcCCCCCCcccCCCCC-CCeEEccCCccccCCcccccCCC--CCCEEEccCCcCcccCCCCCCCC
Q 045598          138 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR-LQCIIMPNNHLEGPIPVEFCQLD--LLQILDISDNNISGSLPSCFHPL  214 (536)
Q Consensus       138 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~  214 (536)
                      .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ ..|..+....  +|+.|++++|.+.+..|..+.. 
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  424 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-  424 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT-
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc-
Confidence            5666666666666666665 45555556665 666666666655 3444444333  5555555555555443322210 


Q ss_pred             CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccc-cccCC-------
Q 045598          215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI-QLCEL-------  286 (536)
Q Consensus       215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l-------  286 (536)
                                     .... ...+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|. .+...       
T Consensus       425 ---------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l  487 (636)
T 4eco_A          425 ---------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT  487 (636)
T ss_dssp             ---------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred             ---------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence                           0000 115668888888888888655566677888899999988888 4443 33333       


Q ss_pred             CCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCC
Q 045598          287 NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ  366 (536)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  366 (536)
                      ++|+.|++++|.++ .+|..+...                          .+++|++|++++|.+++ +|..+..+++|+
T Consensus       488 ~~L~~L~Ls~N~l~-~lp~~~~~~--------------------------~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          488 YLLTSIDLRFNKLT-KLSDDFRAT--------------------------TLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             GGCCEEECCSSCCC-BCCGGGSTT--------------------------TCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             CCccEEECcCCcCC-ccChhhhhc--------------------------cCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence            28999999999888 444444300                          16789999999999987 788888899999


Q ss_pred             EEeC------CCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccc--cCC
Q 045598          367 TLNL------SHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA--TFN  438 (536)
Q Consensus       367 ~L~L------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~  438 (536)
                      +|+|      ++|++.+..|..+..+++|++|+|++|++. .+|..+.  ++|+.|++++|++.......+....  ...
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~  616 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMY  616 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCC
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccc
Confidence            9999      567788889999999999999999999995 6777655  8999999999999875554443322  122


Q ss_pred             ccccccCcCCCCCC
Q 045598          439 ESSYEGNTFLCGLP  452 (536)
Q Consensus       439 ~l~l~~n~~~c~~~  452 (536)
                      .+.+......++|+
T Consensus       617 ~l~~~~~~~i~~C~  630 (636)
T 4eco_A          617 MLFYDKTQDIRGCD  630 (636)
T ss_dssp             EEECCTTSEEESCG
T ss_pred             eeecCCccccCCCc
Confidence            33333444555654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.8e-42  Score=356.60  Aligned_cols=411  Identities=20%  Similarity=0.176  Sum_probs=303.7

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..|+++++|++|++++|
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence            489999999988888999999999999999999955555555 4899999999999999877777999999999999999


Q ss_pred             cCcc-ccchhHhhCCCCCCEEEcccCc-cCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC
Q 045598           81 HLTG-EIPEHLAVGCVNLRFLALSNNN-LQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK  158 (536)
Q Consensus        81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  158 (536)
                      .+++ ..|. .++.+++|++|++++|. +....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus       109 ~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  187 (549)
T 2z81_A          109 PYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL  187 (549)
T ss_dssp             CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred             cccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence            9983 2333 34789999999999998 5555567889999999999999999988888888888888888887776532


Q ss_pred             CCcccCCCCCCCeEEccCCccccCC--c-c----------------------------cccCCCCCCEEEccCCcCcccC
Q 045598          159 IPRWLGNLTRLQCIIMPNNHLEGPI--P-V----------------------------EFCQLDLLQILDISDNNISGSL  207 (536)
Q Consensus       159 ~~~~~~~l~~L~~L~l~~n~~~~~~--~-~----------------------------~~~~l~~L~~L~l~~n~~~~~~  207 (536)
                      ....+..+++|++|++++|++.+..  + .                            .+..+++|+.+++++|.+.+..
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~  267 (549)
T 2z81_A          188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG  267 (549)
T ss_dssp             HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred             chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence            2222345677777777777766431  1 1                            1122334444444444333211


Q ss_pred             CC----------C--------------------------CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcC
Q 045598          208 PS----------C--------------------------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL  251 (536)
Q Consensus       208 ~~----------~--------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l  251 (536)
                      ..          .                          ....+|+.+++++|.+. .++...+..+++|++|++++|.+
T Consensus       268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l  346 (549)
T 2z81_A          268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM  346 (549)
T ss_dssp             CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred             cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence            00          0                          01246788888888874 56655446788888888888888


Q ss_pred             CCccch---hhhCCCCccEEEccccccccccc--ccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEee
Q 045598          252 NGSISD---WVDGLSQLSHLILGHNNLEGEVP--IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTT  326 (536)
Q Consensus       252 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (536)
                      .+..+.   .+..+++|+.|++++|.+++..+  ..+..+++|++|++++|++++ +|..+.....      ...+.+..
T Consensus       347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~------L~~L~Ls~  419 (549)
T 2z81_A          347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEK------MRFLNLSS  419 (549)
T ss_dssp             CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTT------CCEEECTT
T ss_pred             ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhccccc------ccEEECCC
Confidence            765532   35677888888888888875432  457778888888888888874 4444433221      12233333


Q ss_pred             ccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchh
Q 045598          327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ  406 (536)
Q Consensus       327 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  406 (536)
                      +.+..++. ..+++|++|++++|.+++..    ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|..
T Consensus       420 N~l~~l~~-~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          420 TGIRVVKT-CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             SCCSCCCT-TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             CCcccccc-hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence            33332221 22468999999999998643    57899999999999999 4555 467899999999999999988999


Q ss_pred             hhCCCCCCEEEccCCcCcccCC
Q 045598          407 LVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       407 ~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      +..+++|+.|++++|++.+..|
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCcccCEEEecCCCccCCCc
Confidence            9999999999999999998766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.8e-40  Score=336.15  Aligned_cols=379  Identities=20%  Similarity=0.179  Sum_probs=299.7

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCccc-CCccCCCCCCCCEEEccCC
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGS-IPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n   80 (536)
                      ++.++++++ .+|. +  .++|++|++++|.+++..|..+.. +++|++|++++|.+.+. .+.+|.++++|++|++++|
T Consensus        15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            345556665 5554 2  378999999999999655666655 89999999999998744 4678999999999999999


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCC--ccccCCCCCCEEEccCCcCcccCCcC-CCCCCccCeeecccCcCCC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMF--SRNFNLTNLKWLQLEGSRFVGEIPQS-LSKCSSLEGLYLNNNSLSG  157 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~  157 (536)
                      .+++..|.. ++++++|++|++++|.+++..+  ..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+
T Consensus        90 ~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           90 QFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             TTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             ccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            998444544 4789999999999999986433  34889999999999999999877765 8899999999999999988


Q ss_pred             CCCcccCCC--CCCCeEEccCCccccCCcccc--------cCCCCCCEEEccCCcCcccCCCCC----CCCCccEEEccC
Q 045598          158 KIPRWLGNL--TRLQCIIMPNNHLEGPIPVEF--------CQLDLLQILDISDNNISGSLPSCF----HPLSIKQVHLSK  223 (536)
Q Consensus       158 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~--------~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~L~l~~  223 (536)
                      ..+..+..+  .+|+.+++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+    ...+++.+++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            888777766  789999999999886554432        345678888888887765443322    234566666665


Q ss_pred             CCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC--CCCccEEEcccccccccccccccCCCCCCEEecCCCcCCC
Q 045598          224 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG--LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG  301 (536)
Q Consensus       224 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  301 (536)
                      |...+...               ..+.+.+..+..+..  .++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       249 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  313 (455)
T 3v47_A          249 SYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK  313 (455)
T ss_dssp             CTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred             cccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence            54432110               011111111222222  3689999999999998888889999999999999999988


Q ss_pred             CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc
Q 045598          302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS  381 (536)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  381 (536)
                      ..+..+..                            +++|++|++++|.+++..+..+..+++|++|+|++|++++..|.
T Consensus       314 ~~~~~~~~----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          314 IDDNAFWG----------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             ECTTTTTT----------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cChhHhcC----------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            77777655                            67899999999999888889999999999999999999988899


Q ss_pred             cccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCC
Q 045598          382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  429 (536)
Q Consensus       382 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  429 (536)
                      .|..+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       366 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            999999999999999999987777889999999999999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=344.79  Aligned_cols=384  Identities=23%  Similarity=0.237  Sum_probs=297.0

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+.+..|..+..+++|++|++++|++++..|..+.. +++|++|++++|.++. +|..  .+++|++|++++|
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N  100 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFN  100 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSS
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCceee-cCcc--ccCCccEEeccCC
Confidence            4899999999877788999999999999999999555666655 8999999999999984 5554  8999999999999


Q ss_pred             cCcc-ccchhHhhCCCCCCEEEcccCccCccCCccccCCCCC--CEEEccCCcC--cccCCcCCCC--------------
Q 045598           81 HLTG-EIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNL--KWLQLEGSRF--VGEIPQSLSK--------------  141 (536)
Q Consensus        81 ~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~--------------  141 (536)
                      .+++ .+|..+ +.+++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+..              
T Consensus       101 ~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~  176 (520)
T 2z7x_B          101 AFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK  176 (520)
T ss_dssp             CCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred             ccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence            9984 355555 789999999999999986   345667777  9999999988  5555554444              


Q ss_pred             ------------CCccCeeecccCc-------CCCCCCcccCCCC---------------------------CCCeEEcc
Q 045598          142 ------------CSSLEGLYLNNNS-------LSGKIPRWLGNLT---------------------------RLQCIIMP  175 (536)
Q Consensus       142 ------------l~~L~~L~l~~n~-------~~~~~~~~~~~l~---------------------------~L~~L~l~  175 (536)
                                  +++|+.+++++|.       +.+..+ .+..++                           +|++|+++
T Consensus       177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~  255 (520)
T 2z7x_B          177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS  255 (520)
T ss_dssp             CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred             chhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence                        6677777777765       222222 334444                           45555555


Q ss_pred             CCccccCCcccc-----cCCCCCCEEEccCCcCcccCCCCC----CCCCccEEEccCCCCCCcccccccCCCCCccEEEc
Q 045598          176 NNHLEGPIPVEF-----CQLDLLQILDISDNNISGSLPSCF----HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL  246 (536)
Q Consensus       176 ~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  246 (536)
                      +|.+.+..|..+     ..+++|+.+++++|.+ ......+    ...+++.|++++|.+....   .+..+++|++|++
T Consensus       256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L  331 (520)
T 2z7x_B          256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDF  331 (520)
T ss_dssp             EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEEC
T ss_pred             cccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEe
Confidence            565555555555     5566666666666665 1111111    1245778888887764321   1268899999999


Q ss_pred             cCCcCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCcCCCCCCc-cccccchhhhccccceeE
Q 045598          247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFE  323 (536)
Q Consensus       247 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~  323 (536)
                      ++|.+++..|..+..+++|+.|++++|.+++  .+|..+..+++|++|++++|.+++..|. .+..              
T Consensus       332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------  397 (520)
T 2z7x_B          332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--------------  397 (520)
T ss_dssp             CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred             ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence            9999998888889999999999999999986  4567789999999999999999874443 2332              


Q ss_pred             EeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccC
Q 045598          324 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKI  403 (536)
Q Consensus       324 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  403 (536)
                                    +++|++|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++.+.
T Consensus       398 --------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          398 --------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             --------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             --------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence                          67899999999999887777665  79999999999999 67777779999999999999999544


Q ss_pred             chhhhCCCCCCEEEccCCcCcccCC
Q 045598          404 PHQLVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       404 ~~~~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      +..+..+++|+.|++++|++++..+
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhccCCcccEEECcCCCCcccCC
Confidence            4458999999999999999998544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-39  Score=330.95  Aligned_cols=323  Identities=20%  Similarity=0.185  Sum_probs=164.8

Q ss_pred             EEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC
Q 045598           74 FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN  153 (536)
Q Consensus        74 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  153 (536)
                      .++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus        15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444444444 444432   234555555555555554555555555555555555555554555555555555555555


Q ss_pred             cCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598          154 SLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG  233 (536)
Q Consensus       154 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  233 (536)
                      .+....+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+                        .
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~  146 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH------------------------R  146 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT------------------------T
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh------------------------h
Confidence            5554333445555555555555555555555555555555555555555543222                        1


Q ss_pred             ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598          234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH  313 (536)
Q Consensus       234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  313 (536)
                      .|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.....    
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----  222 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----  222 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----
T ss_pred             hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc----
Confidence            2444445555555555554444444455555555555555555444444555555555555554433322221111    


Q ss_pred             hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEe
Q 045598          314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD  393 (536)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  393 (536)
                                              ..+|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+
T Consensus       223 ------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (477)
T 2id5_A          223 ------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ  278 (477)
T ss_dssp             ------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred             ------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence                                    12455555555555543334455555555555555555544444555555555555


Q ss_pred             CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      |++|++++..+..|.++++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            55555555555555555555555555555555444444445555555555555555553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-38  Score=329.77  Aligned_cols=385  Identities=22%  Similarity=0.228  Sum_probs=300.3

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNN   80 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n   80 (536)
                      +|||++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..  .+++|++|++++|
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N  131 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFN  131 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSS
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCC
Confidence            4899999999888889999999999999999999555655554 899999999999998 45655  8999999999999


Q ss_pred             cCccccch-hHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcC--cccCCcCCCC----------------
Q 045598           81 HLTGEIPE-HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF--VGEIPQSLSK----------------  141 (536)
Q Consensus        81 ~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~----------------  141 (536)
                      +++ .++. ..++++++|++|++++|.++......+..+ +|++|++++|.+  .+..|..+..                
T Consensus       132 ~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  209 (562)
T 3a79_B          132 DFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF  209 (562)
T ss_dssp             CCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred             Ccc-ccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence            998 5542 344799999999999999986443333333 449999999988  5555554443                


Q ss_pred             ----------CCccCeeecccCcCC----------------------------C----CCCcccCCCCCCCeEEccCCcc
Q 045598          142 ----------CSSLEGLYLNNNSLS----------------------------G----KIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       142 ----------l~~L~~L~l~~n~~~----------------------------~----~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                                +++|+.+++++|...                            +    ..+.. ...++|++|++++|.+
T Consensus       210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l  288 (562)
T 3a79_B          210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTI  288 (562)
T ss_dssp             CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEE
T ss_pred             hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEe
Confidence                      456667777665310                            0    00000 1124899999999999


Q ss_pred             ccCCcccc-----cCCCCCCEEEccCCcCcccCC-CC----CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598          180 EGPIPVEF-----CQLDLLQILDISDNNISGSLP-SC----FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  249 (536)
Q Consensus       180 ~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  249 (536)
                      .+..|..+     ..++.|+.+++..+.+  ..| ..    +...+++.|++++|.+....   ....+++|++|++++|
T Consensus       289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n  363 (562)
T 3a79_B          289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQN  363 (562)
T ss_dssp             CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSS
T ss_pred             eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCC
Confidence            87777766     5666666666666665  122 11    12357999999999874322   1368899999999999


Q ss_pred             cCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCcCCCCCCc-cccccchhhhccccceeEEee
Q 045598          250 RLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNNLHGPIPS-CFDNTTLHEKKQIREKFEFTT  326 (536)
Q Consensus       250 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  326 (536)
                      .+++..+..+..+++|+.|++++|.+++  ..|..+..+++|+.|++++|.+++..|. .+..                 
T Consensus       364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-----------------  426 (562)
T 3a79_B          364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-----------------  426 (562)
T ss_dssp             CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------------
T ss_pred             ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------------
Confidence            9998889999999999999999999986  3356789999999999999999984443 3433                 


Q ss_pred             ccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchh
Q 045598          327 KNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQ  406 (536)
Q Consensus       327 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  406 (536)
                                 +++|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|+|++|+++.+.+..
T Consensus       427 -----------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~  492 (562)
T 3a79_B          427 -----------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV  492 (562)
T ss_dssp             -----------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred             -----------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence                       67899999999999877776554  79999999999999 56666669999999999999999544444


Q ss_pred             hhCCCCCCEEEccCCcCcccCC
Q 045598          407 LVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       407 ~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      +..+++|+.|++++|++.+..+
T Consensus       493 ~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          493 FDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTCTTCCCEECCSCCBCCCHH
T ss_pred             HhcCCCCCEEEecCCCcCCCcc
Confidence            8999999999999999998654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=322.22  Aligned_cols=321  Identities=21%  Similarity=0.207  Sum_probs=239.8

Q ss_pred             cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598           23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL  102 (536)
Q Consensus        23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  102 (536)
                      -+.++.++++++ .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence            467888888888 7887665   48899999999999888888999999999999999988 554444578899999999


Q ss_pred             ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598          103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      ++|.++......+.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            99999887777788889999999999988877788888888899999988888877777888888888888888888877


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598          183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL  262 (536)
Q Consensus       183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  262 (536)
                      .+..+..+++|+.|++++|.+.+.                        +...|..+++|++|++++|...+.++......
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence            777788888888888888776532                        22236677888888888877766665555555


Q ss_pred             CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598          263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS  342 (536)
Q Consensus       263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  342 (536)
                      .+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..+..                            +++|+
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------l~~L~  275 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE----------------------------LLRLQ  275 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------------CTTCC
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------------cccCC
Confidence            67888888888777544456777777777777777766555444433                            44566


Q ss_pred             eEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                      +|++++|.+.+..|..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++.
T Consensus       276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            6666666666555556666666666666666666555555555666666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.4e-37  Score=310.48  Aligned_cols=346  Identities=26%  Similarity=0.351  Sum_probs=259.3

Q ss_pred             CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCC
Q 045598           19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLR   98 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~   98 (536)
                      .+++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence            3578888888888887 5664 3 347888999998888886543  888888999999888888 5554  47888899


Q ss_pred             EEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCc
Q 045598           99 FLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH  178 (536)
Q Consensus        99 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  178 (536)
                      +|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|+.|+++ +.+.+.  ..+..+++|++|++++|.
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            99998888876543  77888889999888887753  247888888888886 344422  237788888888888888


Q ss_pred             cccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh
Q 045598          179 LEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW  258 (536)
Q Consensus       179 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  258 (536)
                      +.+.  ..+..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+ ++  .+..+++|++|++++|.+.+..+  
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--  260 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP--  260 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh--
Confidence            8754  347788888888888888876544 3456778888888887753 22  36777888888888888875544  


Q ss_pred             hhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccc
Q 045598          259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVL  338 (536)
Q Consensus       259 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (536)
                      +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+..+  +..                            +
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~----------------------------l  308 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN----------------------------L  308 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG----------------------------C
T ss_pred             hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC----------------------------C
Confidence            6777888888888888875433  7778888888888887775433  221                            5


Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV  418 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  418 (536)
                      ++|++|++++|.+++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence            678888888888876555  66778888888888888754  467778888888888888876665  677888888888


Q ss_pred             cCCcCcc
Q 045598          419 AYNNLSG  425 (536)
Q Consensus       419 ~~N~l~~  425 (536)
                      ++|++++
T Consensus       383 ~~n~~~~  389 (466)
T 1o6v_A          383 NDQAWTN  389 (466)
T ss_dssp             CCEEEEC
T ss_pred             cCCcccC
Confidence            8888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-36  Score=319.97  Aligned_cols=423  Identities=20%  Similarity=0.186  Sum_probs=321.5

Q ss_pred             CCCCcCCCC---CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchh
Q 045598           13 FRLPIHSHK---RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEH   89 (536)
Q Consensus        13 ~~~~~~~~~---~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   89 (536)
                      +|.+...|.   .-+..+.++.+++ ++|..+..   ++++|+|++|.++...+.+|.++++|++|+|++|+++ .+++.
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp~---~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~   94 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDG   94 (635)
T ss_dssp             -----CCSEEEETTTEEECTTSCCS-SCCSSSCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTT
T ss_pred             CCCCCCCccccCCCCEEECCCCCcC-ccCCCCCc---CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChh
Confidence            454444442   2356788888888 89987754   8999999999999888889999999999999999999 88888


Q ss_pred             HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCC-CCCcccCCCCC
Q 045598           90 LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTR  168 (536)
Q Consensus        90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~  168 (536)
                      .|.++++|++|+|++|+++...+..|.++++|++|++++|++.+..+..|+++++|++|++++|.+.. ..|..+..+++
T Consensus        95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~  174 (635)
T 4g8a_A           95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  174 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence            78999999999999999999888899999999999999999998877889999999999999999875 35778889999


Q ss_pred             CCeEEccCCccccCCcccccCCCCC----CEEEccCCcCcccCCCCCCC-------------------------------
Q 045598          169 LQCIIMPNNHLEGPIPVEFCQLDLL----QILDISDNNISGSLPSCFHP-------------------------------  213 (536)
Q Consensus       169 L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~-------------------------------  213 (536)
                      |++|++++|++++..+..+..+.++    ..++++.|.+....+..+..                               
T Consensus       175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~  254 (635)
T 4g8a_A          175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH  254 (635)
T ss_dssp             CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred             hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence            9999999999987777666543322    24455554443222211111                               


Q ss_pred             -------------------------------------------------------------------------CCccEEE
Q 045598          214 -------------------------------------------------------------------------LSIKQVH  220 (536)
Q Consensus       214 -------------------------------------------------------------------------~~L~~L~  220 (536)
                                                                                               ..++.++
T Consensus       255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  334 (635)
T 4g8a_A          255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE  334 (635)
T ss_dssp             EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEE
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhh
Confidence                                                                                     1223333


Q ss_pred             ccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccc--cccccccCCCCCCEEecCCCc
Q 045598          221 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG--EVPIQLCELNQLQLLDLSNNN  298 (536)
Q Consensus       221 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~  298 (536)
                      +.++.+.+ ++   ...++.|+.+++..|.+....  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..+.
T Consensus       335 l~~~~~~~-~~---~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~  408 (635)
T 4g8a_A          335 LVNCKFGQ-FP---TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG  408 (635)
T ss_dssp             EESCEESS-CC---CCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred             cccccccC-cC---cccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence            33333321 11   235678999999999876432  34468999999999998863  355667788999999999988


Q ss_pred             CCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCC-C
Q 045598          299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT-G  377 (536)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~  377 (536)
                      .....+. +..........+.......   .........+.+++.++++.|.+.+..+..+..+++|+.|++++|.+. +
T Consensus       409 ~~~~~~~-~~~l~~L~~l~l~~~~~~~---~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~  484 (635)
T 4g8a_A          409 VITMSSN-FLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  484 (635)
T ss_dssp             EEEECSC-CTTCTTCCEEECTTSEEES---TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             ccccccc-ccccccccchhhhhccccc---cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence            7654332 2222211111111100000   000111234678999999999999989999999999999999999754 4


Q ss_pred             CCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598          378 SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       378 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      ..|+.|..+++|++|+|++|++++..|..|.++++|+.|++++|++++..|..+..+++++.+++++|....-
T Consensus       485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  557 (635)
T 4g8a_A          485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  557 (635)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC
T ss_pred             cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC
Confidence            5788999999999999999999999999999999999999999999999898888999999999999987653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.9e-36  Score=305.87  Aligned_cols=345  Identities=26%  Similarity=0.324  Sum_probs=296.2

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598           45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL  124 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  124 (536)
                      +++++.|+++++.+.. +| .+..+++|++|++++|.++ .++.  +..+++|++|++++|.+++..+  +.++++|++|
T Consensus        45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            3589999999999874 44 4888999999999999998 6665  5799999999999999987654  8899999999


Q ss_pred             EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      ++++|.+.+..+  +.++++|++|++++|.+.+ .+ .+..+++|++|+++ +.+.+.  ..+..+++|+.|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence            999999986533  8999999999999999875 33 58899999999997 445433  34889999999999999987


Q ss_pred             ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598          205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC  284 (536)
Q Consensus       205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  284 (536)
                      +. +....+++|+.|++++|.+.+..+   +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +.
T Consensus       191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 DI-SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CC-GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC-hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence            54 344577899999999999875544   67789999999999999854  457889999999999999986554  88


Q ss_pred             CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598          285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR  364 (536)
Q Consensus       285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  364 (536)
                      .+++|+.|++++|.+++..+  +..                            +++|++|++++|.+.+..+  +..+++
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~----------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAG----------------------------LTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTT----------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             cCCCCCEEECCCCccCcccc--ccC----------------------------CCccCeEEcCCCcccCchh--hcCCCC
Confidence            99999999999999886544  322                            6799999999999987554  788999


Q ss_pred             CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCcccccc
Q 045598          365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEG  444 (536)
Q Consensus       365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~  444 (536)
                      |+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++++.+++.+
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  384 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence            9999999999997765  78999999999999999865  468899999999999999998887  67899999999999


Q ss_pred             CcCCC
Q 045598          445 NTFLC  449 (536)
Q Consensus       445 n~~~c  449 (536)
                      |++..
T Consensus       385 n~~~~  389 (466)
T 1o6v_A          385 QAWTN  389 (466)
T ss_dssp             EEEEC
T ss_pred             CcccC
Confidence            99876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-36  Score=306.70  Aligned_cols=368  Identities=25%  Similarity=0.291  Sum_probs=234.6

Q ss_pred             CEEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCC-------------CCcEEEccCCCCcccCCccCC
Q 045598            1 TLSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLP-------------SLYAFNNSMNALDGSIPSSFG   67 (536)
Q Consensus         1 ~L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~-------------~L~~L~l~~n~~~~~~~~~~~   67 (536)
                      +|++++|++ +.+|..++++++|++|++++|.+.|.+|..++. ++             +++.|++++|.+++ +|..  
T Consensus        15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~--   89 (454)
T 1jl5_A           15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL--   89 (454)
T ss_dssp             --------------------CCHHHHHHHHHHHHHTSCTTSCC-CHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC--
T ss_pred             hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccccc-chhcchhhhhhhhccCCCEEEecCCcccc-CCCC--
Confidence            478889999 799999999999999999999998888887765 33             35999999999885 3432  


Q ss_pred             CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCe
Q 045598           68 NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEG  147 (536)
Q Consensus        68 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  147 (536)
                       .++|++|++++|.++ .+|.    ..++|++|++++|.+++....    .++|++|++++|.+.+ +| .+.++++|++
T Consensus        90 -~~~L~~L~l~~n~l~-~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~  157 (454)
T 1jl5_A           90 -PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI  157 (454)
T ss_dssp             -CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred             -cCCCCEEEccCCcCC-cccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence             378999999999998 5774    347899999999988854321    2689999999999986 55 5899999999


Q ss_pred             eecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC
Q 045598          148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH  227 (536)
Q Consensus       148 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  227 (536)
                      |++++|.+.+ +|..+   ++|++|++++|++.+. | .+..+++|+.|++++|.+++... .  ..+|+.|++++|.+.
T Consensus       158 L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~-~--~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          158 IDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD-L--PLSLESIVAGNNILE  228 (454)
T ss_dssp             EECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC-C--CTTCCEEECCSSCCS
T ss_pred             EECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC-C--cCcccEEECcCCcCC
Confidence            9999999884 55433   5899999999999863 4 68899999999999999886432 2  258999999999886


Q ss_pred             CcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598          228 GQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF  307 (536)
Q Consensus       228 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  307 (536)
                       .++.  +..+++|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|..   +++|+.|++++|.+++... ..
T Consensus       229 -~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~-~~  296 (454)
T 1jl5_A          229 -ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE-LP  296 (454)
T ss_dssp             -SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC-CC
T ss_pred             -cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC-cC
Confidence             5653  8889999999999999885 343   24789999999999885 5543   4789999999998876221 10


Q ss_pred             cccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCC
Q 045598          308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  387 (536)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  387 (536)
                      ..         ...+.+..+.+..++.  .+++|++|++++|.+++ +|..   +++|++|++++|.+++ +|.   .++
T Consensus       297 ~~---------L~~L~l~~N~l~~i~~--~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~  357 (454)
T 1jl5_A          297 PN---------LYYLNASSNEIRSLCD--LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQ  357 (454)
T ss_dssp             TT---------CCEEECCSSCCSEECC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred             Cc---------CCEEECcCCcCCcccC--CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhh
Confidence            00         1111222222222111  12355666666665553 3322   3556666666666553 333   245


Q ss_pred             CCCEEeCCCCcccc--cCchhhhCC-------------CCCCEEEccCCcCcc
Q 045598          388 YVESLDLSNNKLNG--KIPHQLVEL-------------KTLEVFSVAYNNLSG  425 (536)
Q Consensus       388 ~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~  425 (536)
                      +|++|++++|++++  .+|..+..+             ++|+.|++++|++++
T Consensus       358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            56666666666655  445555444             455555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-36  Score=298.10  Aligned_cols=334  Identities=22%  Similarity=0.212  Sum_probs=186.7

Q ss_pred             CCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCee
Q 045598           69 MKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGL  148 (536)
Q Consensus        69 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  148 (536)
                      ++++++|+++++.++ .+|..++..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            467777777777776 6676666677777777777777776666677777777777777777776666667777777777


Q ss_pred             ecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598          149 YLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  228 (536)
Q Consensus       149 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  228 (536)
                      ++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..  ....++|+.+++++|.+.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence            77777776444444567777777777777777666666777777777777777665431  1223344444444444321


Q ss_pred             cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598          229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD  308 (536)
Q Consensus       229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  308 (536)
                            +...++|++|++++|.+... +..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+.
T Consensus       201 ------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          201 ------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             ------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence                  11223455555555555432 111  124455555555555422  2344455555555555555444343333


Q ss_pred             ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCC
Q 045598          309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY  388 (536)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  388 (536)
                      .                            +++|++|++++|.+++ .+..+..+++|++|++++|++. .+|..+..+++
T Consensus       270 ~----------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          270 K----------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             T----------------------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             c----------------------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence            2                            3445555555555443 2333444555555555555555 23444555555


Q ss_pred             CCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCC
Q 045598          389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL  451 (536)
Q Consensus       389 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~  451 (536)
                      |++|++++|+++.. +  +..+++|+.|++++|++.+....  ..+..+....+.+++..|.+
T Consensus       320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCT
T ss_pred             CCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecc
Confidence            56666665555533 1  34455555566666555543211  11233334444455555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-35  Score=299.09  Aligned_cols=357  Identities=18%  Similarity=0.131  Sum_probs=256.7

Q ss_pred             cccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchh
Q 045598           10 GGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEH   89 (536)
Q Consensus        10 ~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   89 (536)
                      .+..+.++..+++|++|++++|.++ .+| .+. .+++|++|++++|.+++. +  ++++++|++|++++|.++ .++  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--
T ss_pred             CcccccChhHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--
Confidence            3344456778899999999999998 456 444 488999999999999864 3  889999999999999998 555  


Q ss_pred             HhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCC
Q 045598           90 LAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL  169 (536)
Q Consensus        90 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  169 (536)
                       ++.+++|++|++++|.+++..   +..+++|++|++++|.+.+.   .+..+++|++|++++|...+..  .+..+++|
T Consensus       102 -~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             -cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence             478999999999999998742   78889999999999998864   3788899999999999654344  47788999


Q ss_pred             CeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598          170 QCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  249 (536)
Q Consensus       170 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  249 (536)
                      ++|++++|++++. +  +..+++|+.|++++|.+++.  ....+++|+.|++++|.+.+ ++   +..+++|+.|++++|
T Consensus       173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSS
T ss_pred             CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCC
Confidence            9999999999864 3  77889999999999998865  34467889999999998875 44   678889999999999


Q ss_pred             cCCCccchhhhCCC-------CccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598          250 RLNGSISDWVDGLS-------QLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF  322 (536)
Q Consensus       250 ~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  322 (536)
                      .+++..+..+..+.       +|+.|++++|...+.+|  +..+++|+.|++++|...+..|.........         
T Consensus       244 ~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L---------  312 (457)
T 3bz5_A          244 PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL---------  312 (457)
T ss_dssp             CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC---------
T ss_pred             cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe---------
Confidence            98876544433332       34445555555444444  4567788888888887655544322111100         


Q ss_pred             EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598          323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK  402 (536)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  402 (536)
                                . ....++|++|++++|.+++.   .++.+++|+.|++++|++++        ++.|+.|++++|.+.+.
T Consensus       313 ----------~-l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          313 ----------D-LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE  370 (457)
T ss_dssp             ----------C-CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred             ----------c-hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence                      0 01135666677777666653   26666667777777666664        23455556666666543


Q ss_pred             CchhhhCCCCCCEEEccCCcCcccCCCCc
Q 045598          403 IPHQLVELKTLEVFSVAYNNLSGEIPEWT  431 (536)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  431 (536)
                           ..+..|..+++++|+++|.+|..+
T Consensus       371 -----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          371 -----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             -----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             -----ceeeecCccccccCcEEEEcChhH
Confidence                 234556777888888888777643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.3e-35  Score=294.30  Aligned_cols=373  Identities=23%  Similarity=0.258  Sum_probs=263.4

Q ss_pred             CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCC-------------CEEEccCCcCccc
Q 045598           19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFL-------------QFLDLSNNHLTGE   85 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~   85 (536)
                      ..+.|++|++++|.+ +.+|..+.. +++|++|++++|.+.+..|..++++++|             ++|++++|.++ .
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~   85 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred             ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence            358899999999999 699999876 8999999999999999999999998865             99999999998 6


Q ss_pred             cchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCC
Q 045598           86 IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN  165 (536)
Q Consensus        86 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  165 (536)
                      +|.    ..++|++|++++|.+++. +.   ..++|++|++++|.+.+. +..   .++|++|++++|.+.+ +| .++.
T Consensus        86 lp~----~~~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~  151 (454)
T 1jl5_A           86 LPE----LPPHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN  151 (454)
T ss_dssp             CCS----CCTTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred             CCC----CcCCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence            775    247999999999999974 33   248999999999998853 221   2689999999999985 66 5999


Q ss_pred             CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEE
Q 045598          166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD  245 (536)
Q Consensus       166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  245 (536)
                      +++|++|++++|++++ .|..   ..+|++|++++|.+++. +....+++|+.|++++|.+.+ ++..    .++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC----cCcccEEE
Confidence            9999999999999985 3433   35999999999999874 556688999999999999864 4332    25999999


Q ss_pred             ccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEe
Q 045598          246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFT  325 (536)
Q Consensus       246 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (536)
                      +++|.+. .+|. +..+++|++|++++|++++ +|..   +++|+.|++++|.+++. |.....         ...+.+.
T Consensus       222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~~~~---------L~~L~ls  285 (454)
T 1jl5_A          222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PELPQS---------LTFLDVS  285 (454)
T ss_dssp             CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CCCCTT---------CCEEECC
T ss_pred             CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc-CcccCc---------CCEEECc
Confidence            9999998 5564 8889999999999999985 4442   48999999999999863 332211         2233333


Q ss_pred             eccceeeeccccccccceEEccCCcCcCCCcccccCC-CCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCc
Q 045598          326 TKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNL-TRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP  404 (536)
Q Consensus       326 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  404 (536)
                      .+.+..++.  .+++|++|++++|.+++. +    .+ ++|++|++++|++++ +|..   +++|++|++++|+++ .+|
T Consensus       286 ~N~l~~l~~--~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp  353 (454)
T 1jl5_A          286 ENIFSGLSE--LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP  353 (454)
T ss_dssp             SSCCSEESC--CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred             CCccCcccC--cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence            443433322  246899999999988752 2    23 589999999999986 4443   588999999999998 455


Q ss_pred             hhhhCCCCCCEEEccCCcCcc--cCCCCcccc-------------ccCCccccccCcCCC
Q 045598          405 HQLVELKTLEVFSVAYNNLSG--EIPEWTAQF-------------ATFNESSYEGNTFLC  449 (536)
Q Consensus       405 ~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~-------------~~l~~l~l~~n~~~c  449 (536)
                      .   .+++|+.|++++|++++  .+|..+..+             ++++.+++++|++..
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence            5   47899999999999998  778877776             678888888888765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-35  Score=305.38  Aligned_cols=334  Identities=22%  Similarity=0.208  Sum_probs=206.2

Q ss_pred             CCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCee
Q 045598           69 MKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGL  148 (536)
Q Consensus        69 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  148 (536)
                      +++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456677777777766 6666666667777777777777776666667777777777777777776666666777777777


Q ss_pred             ecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598          149 YLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  228 (536)
Q Consensus       149 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  228 (536)
                      ++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..  ...+++|+.+++++|.+.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence            77777776544445567777777777777777666666777777777777777666432  2234455555555554432


Q ss_pred             cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598          229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD  308 (536)
Q Consensus       229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  308 (536)
                            +...++|+.|++++|.+....+..   .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+.
T Consensus       207 ------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          207 ------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             ------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             ------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                  223345666666666665322211   2456666666666653  24455666666666666666655555444


Q ss_pred             ccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCC
Q 045598          309 NTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKY  388 (536)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  388 (536)
                      .                            +++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus       276 ~----------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~  325 (597)
T 3oja_B          276 K----------------------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  325 (597)
T ss_dssp             T----------------------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             C----------------------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence            3                            4556666666666654 3444555677777777777776 35555666777


Q ss_pred             CCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCC
Q 045598          389 VESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL  451 (536)
Q Consensus       389 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~  451 (536)
                      |+.|+|++|++++..   +..+++|+.|++++|++.+.....  .+..+....+.+++..|..
T Consensus       326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~--~~~~~~~~~~~~~~~~C~~  383 (597)
T 3oja_B          326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKI  383 (597)
T ss_dssp             CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH--HTTTCCTTTBCCCCCCCCT
T ss_pred             CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH--HHHHHhhhccccccccCCc
Confidence            777777777766432   445667777777777776543211  2334444455566666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.9e-34  Score=283.81  Aligned_cols=311  Identities=22%  Similarity=0.239  Sum_probs=223.1

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      +++++.|+++++.+. .+|..++..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...++.+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            467777777777776 677766666777777777777777666667777777777777777777 555454467777777


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                      |++++|.++......+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+.   .+..+++|+++++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777765555566777777777777777666666677777777777777766543   234456666666666655


Q ss_pred             ccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598          180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV  259 (536)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  259 (536)
                      .+     +...++|+.|++++|.+...                        +.   ...++|+.|++++|.+++.  .++
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~---~~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVV------------------------RG---PVNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEE------------------------EC---CCCSSCCEEECCSSCCCCC--GGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeec------------------------cc---cccccccEEECCCCCCccc--HHH
Confidence            42     12234555565555555422                        22   1236788888888888754  567


Q ss_pred             hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598          260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS  339 (536)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (536)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++++... .+.                            .++
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~----------------------------~l~  295 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQ----------------------------PIP  295 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSS----------------------------CCT
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccC----------------------------CCC
Confidence            788889999999998887778888888999999999888775322 111                            167


Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK  402 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  402 (536)
                      +|++|++++|.+. .+|..+..+++|++|++++|++++. +  +..+++|++|++++|++.+.
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            8999999999888 4566678899999999999999854 2  67889999999999999764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.2e-33  Score=276.70  Aligned_cols=304  Identities=23%  Similarity=0.318  Sum_probs=151.1

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598           45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL  124 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  124 (536)
                      +++|+.|+++++.+.. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            3455555555555542 22 2455555555555555555 3333  34555555555555555432  234455555555


Q ss_pred             EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      ++++|.+.+.. . +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            55555544322 1 445555555555555333222 224455555555555555443222  444445555555544443


Q ss_pred             ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598          205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC  284 (536)
Q Consensus       205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  284 (536)
                      +.                        +.  +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+++..+  +.
T Consensus       191 ~~------------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 DI------------------------SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CC------------------------GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             cc------------------------cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            11                        11  4445556666666665554322  4555566666666665553322  55


Q ss_pred             CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598          285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR  364 (536)
Q Consensus       285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  364 (536)
                      .+++|++|++++|.+++.  ..+..                            +++|++|++++|.+++.  ..+..+++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~~----------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~  288 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVKD----------------------------LTKLKMLNVGSNQISDI--SVLNNLSQ  288 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGTT----------------------------CTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             cCCCCCEEECCCCccCCC--hhHhc----------------------------CCCcCEEEccCCccCCC--hhhcCCCC
Confidence            556666666666555432  11111                            34555555555555532  23555556


Q ss_pred             CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      |++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6666666665555555555555666666666666554433  455556666666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-33  Score=284.65  Aligned_cols=353  Identities=19%  Similarity=0.185  Sum_probs=260.8

Q ss_pred             CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCC
Q 045598           33 FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMF  112 (536)
Q Consensus        33 ~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (536)
                      ..+..+..+.. +++|+.|++++|.+++. | .+..+++|++|++++|.++ .+|   ++.+++|++|++++|.+++.  
T Consensus        30 ~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~--  100 (457)
T 3bz5_A           30 MQATDTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL--  100 (457)
T ss_dssp             CCTTSEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC--
T ss_pred             cCcccccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee--
Confidence            33344445554 78999999999999864 4 6899999999999999998 565   47899999999999999875  


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCC
Q 045598          113 SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL  192 (536)
Q Consensus       113 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  192 (536)
                       .+.++++|++|++++|++.+. +  +..+++|++|++++|.+.+.   .++.+++|++|++++|...+..  .+..+++
T Consensus       101 -~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~  171 (457)
T 3bz5_A          101 -DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ  171 (457)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred             -ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence             278899999999999998864 3  88999999999999999864   3788999999999999544333  4778899


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccc
Q 045598          193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH  272 (536)
Q Consensus       193 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  272 (536)
                      |+.|++++|++++..  ....++|+.|++++|.+.+.    .+..+++|++|++++|++++ +|  +..+++|+.|++++
T Consensus       172 L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             CCEEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            999999999998753  45678899999999988653    27788999999999999986 44  77889999999999


Q ss_pred             ccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc
Q 045598          273 NNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  352 (536)
Q Consensus       273 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  352 (536)
                      |++++..   +..+++|+.|++++|.+....-..-..                   ...++ ...+++|+.|++++|...
T Consensus       243 N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~-------------------~~~~~-~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          243 NPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQ-------------------LIYFQ-AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTT-------------------CCEEE-CTTCTTCCCCCCTTCTTC
T ss_pred             CcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCcc-------------------CCccc-ccccccCCEEECCCCccc
Confidence            9998643   445677777777776654321110000                   00011 122577888888888765


Q ss_pred             CCCcc--------cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          353 GPIPL--------QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       353 ~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      +.+|.        .+.++++|++|++++|++++.   .+..+++|+.|++++|++++        ++.|..|++++|.+.
T Consensus       300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~  368 (457)
T 3bz5_A          300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE  368 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred             ceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence            54443        245566777777777777763   26777777777777777764        245566667777777


Q ss_pred             ccCCCCccccccCCccccccCcCCCCC
Q 045598          425 GEIPEWTAQFATFNESSYEGNTFLCGL  451 (536)
Q Consensus       425 ~~~~~~~~~~~~l~~l~l~~n~~~c~~  451 (536)
                      +.     ..+..+..++++.|.+....
T Consensus       369 g~-----~~~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          369 AE-----GQTITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             EE-----EEEEECCCBCCBTTBEEEEC
T ss_pred             ec-----ceeeecCccccccCcEEEEc
Confidence            64     24556677777777765443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.1e-33  Score=271.58  Aligned_cols=307  Identities=21%  Similarity=0.338  Sum_probs=248.7

Q ss_pred             cCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCc
Q 045598           65 SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSS  144 (536)
Q Consensus        65 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  144 (536)
                      .+..+++|++|+++++.++ .++.  +..+++|++|++++|.++...+  +..+++|++|++++|.+...  ..+.++++
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~  111 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN  111 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence            3567788999999998887 6664  3678889999999888876544  77888888888888887753  35778888


Q ss_pred             cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598          145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  224 (536)
Q Consensus       145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  224 (536)
                      |++|++++|.+.+. +. +..+++|++|++++|..... ...+..+++|+.|++++|.+.+.                  
T Consensus       112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~------------------  170 (347)
T 4fmz_A          112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV------------------  170 (347)
T ss_dssp             CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCC------------------
T ss_pred             CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCc------------------
Confidence            88888888887743 32 77788888888888754433 33467777777777777766522                  


Q ss_pred             CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598          225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                            +.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+
T Consensus       171 ------~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~  238 (347)
T 4fmz_A          171 ------TP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP  238 (347)
T ss_dssp             ------GG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             ------hh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence                  11  6788999999999999986543  7889999999999999985544  8889999999999999886544


Q ss_pred             ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598          305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS  384 (536)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  384 (536)
                        +..                            +++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+.
T Consensus       239 --~~~----------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~  284 (347)
T 4fmz_A          239 --LAN----------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN  284 (347)
T ss_dssp             --GTT----------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred             --hhc----------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc
Confidence              322                            67999999999999864  4688999999999999999965  5689


Q ss_pred             CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcC
Q 045598          385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF  447 (536)
Q Consensus       385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~  447 (536)
                      .+++|++|++++|++++..+..+..+++|+.|++++|++++..|  +..+++++.+++.+|+.
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            99999999999999999999999999999999999999998777  67899999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.9e-33  Score=291.58  Aligned_cols=311  Identities=22%  Similarity=0.244  Sum_probs=211.5

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      +++++.++++++.+. .+|..++..+++|+.|++++|.+++..+.+|.++++|++|++++|.++ .++...++++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            356666666666665 566665555666666666666666665666666666666666666666 444444456666666


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                      |++++|.++...+..+.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+.   .+..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence            66666666655555556666666666666666655555666666666666666666533   133455566666666555


Q ss_pred             ccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598          180 EGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV  259 (536)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  259 (536)
                      .+     +...++|+.|++++|.+..                        ++..   ..++|+.|++++|.+++  +.++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~------------------------~~~~---~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINV------------------------VRGP---VNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCE------------------------EECS---CCSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCcccc------------------------cccc---cCCCCCEEECCCCCCCC--Chhh
Confidence            42     2233445555555555432                        2221   12578888888888875  3667


Q ss_pred             hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598          260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS  339 (536)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (536)
                      ..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++.. ..+..                            ++
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~----------------------------l~  301 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQP----------------------------IP  301 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSC----------------------------CT
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-ccccc----------------------------CC
Confidence            78888999999999888888888888899999999998887532 22211                            67


Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK  402 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  402 (536)
                      +|+.|++++|.+. .+|..+..+++|+.|+|++|.+++..   +..+++|+.|++++|++.+.
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            8999999999888 56777888999999999999998652   67788999999999998754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-34  Score=274.61  Aligned_cols=260  Identities=34%  Similarity=0.567  Sum_probs=208.8

Q ss_pred             CccCeeecccCcCCC--CCCcccCCCCCCCeEEccC-CccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEE
Q 045598          143 SSLEGLYLNNNSLSG--KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQV  219 (536)
Q Consensus       143 ~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  219 (536)
                      .+++.|++++|.+.+  ..|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++.             
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-------------  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-------------  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-------------
Confidence            356666666666665  5566666666677777663 666666666666777777777776666532             


Q ss_pred             EccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCC-CCCEEecCCCc
Q 045598          220 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN-QLQLLDLSNNN  298 (536)
Q Consensus       220 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  298 (536)
                                ++.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.
T Consensus       117 ----------~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          117 ----------IPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ----------CCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ----------CCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                      2222 66677888888888888777777788888888888888888877888888887 88888888888


Q ss_pred             CCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC
Q 045598          299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS  378 (536)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  378 (536)
                      +++..|..+..                            ++ |++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       186 l~~~~~~~~~~----------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  236 (313)
T 1ogq_A          186 LTGKIPPTFAN----------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD  236 (313)
T ss_dssp             EEEECCGGGGG----------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred             eeccCChHHhC----------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence            88777766654                            33 88899999998888899999999999999999999976


Q ss_pred             CcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCCCCC
Q 045598          379 IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR  457 (536)
Q Consensus       379 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~~C~  457 (536)
                      .+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++++.+++.+||+.|+.|++.|.
T Consensus       237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCCCCC
Confidence            655 888999999999999999999999999999999999999999999987 78999999999999999998877663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.6e-31  Score=259.50  Aligned_cols=292  Identities=22%  Similarity=0.273  Sum_probs=197.5

Q ss_pred             CCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeee
Q 045598           70 KFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLY  149 (536)
Q Consensus        70 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  149 (536)
                      .++++++++++.++ .+|..+   .+++++|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            35677777777776 666544   25677777777777766666677777777777777777766677777777777777


Q ss_pred             cccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCc
Q 045598          150 LNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ  229 (536)
Q Consensus       150 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  229 (536)
                      +++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+...                      .
T Consensus       107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~  161 (330)
T 1xku_A          107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------G  161 (330)
T ss_dssp             CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------G
T ss_pred             CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------C
Confidence            7777776 3444333  6788888888877776666777778888888877776521                      1


Q ss_pred             ccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccc
Q 045598          230 LKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN  309 (536)
Q Consensus       230 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  309 (536)
                      .....+..+++|++|++++|.++. +|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            122235666777777777777764 33322  267777777777777666667777777777777777776655544433


Q ss_pred             cchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccC----
Q 045598          310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN----  385 (536)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----  385 (536)
                                                  +++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..    
T Consensus       239 ----------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          239 ----------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  289 (330)
T ss_dssp             ----------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             ----------------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence                                        456777777777776 55666777778888888888877666665543    


Q ss_pred             --CCCCCEEeCCCCcccc--cCchhhhCCCCCCEEEccCCc
Q 045598          386 --LKYVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN  422 (536)
Q Consensus       386 --l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~N~  422 (536)
                        .+.|+.|++++|.+..  +.|..|..+++++.+++++|+
T Consensus       290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence              3667778888887753  556677777777777777774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=8e-32  Score=261.68  Aligned_cols=290  Identities=22%  Similarity=0.284  Sum_probs=188.6

Q ss_pred             CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598           71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL  150 (536)
Q Consensus        71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  150 (536)
                      +++.++++++.++ .+|..+   .++|++|++++|.++...+..+.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5667777777766 666544   256777777777777666666777777777777777777666667777777777777


Q ss_pred             ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcc
Q 045598          151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  230 (536)
Q Consensus       151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  230 (536)
                      ++|.+. .+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|.++..                      ..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            777776 3444333  6777777777777766666677777777777777776521                      01


Q ss_pred             cccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccccc
Q 045598          231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT  310 (536)
Q Consensus       231 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  310 (536)
                      ....+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+.. 
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-  239 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-  239 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence            11224444 66666666666664 232221  56677777777776655566667777777777777776655544433 


Q ss_pred             chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCC----
Q 045598          311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNL----  386 (536)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----  386 (536)
                                                 +++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|...    
T Consensus       240 ---------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          240 ---------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             ---------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             ---------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence                                       456777777777666 456667777777777777777776655555442    


Q ss_pred             --CCCCEEeCCCCccc--ccCchhhhCCCCCCEEEccCCc
Q 045598          387 --KYVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN  422 (536)
Q Consensus       387 --~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~N~  422 (536)
                        ++|+.|++++|.+.  +..|.+|..+++|+.+++++|+
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              56777777777766  4566677777777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.8e-35  Score=301.36  Aligned_cols=363  Identities=19%  Similarity=0.140  Sum_probs=211.4

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcc----cCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG----SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV   95 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   95 (536)
                      .++|++|+++++++++.....++..+++|+.|++++|.+++    .++..+..+++|++|++++|.+++..+..++..+.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            35788999999998755555556668899999999998875    34567888899999999999887555556656666


Q ss_pred             ----CCCEEEcccCccCcc----CCccccCCCCCCEEEccCCcCcccCCcC-----CCCCCccCeeecccCcCCCCC---
Q 045598           96 ----NLRFLALSNNNLQGH----MFSRNFNLTNLKWLQLEGSRFVGEIPQS-----LSKCSSLEGLYLNNNSLSGKI---  159 (536)
Q Consensus        96 ----~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----~~~l~~L~~L~l~~n~~~~~~---  159 (536)
                          +|++|++++|.++..    .+..+..+++|++|++++|.+.+..+..     ....++|++|++++|.+.+..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                699999999988743    3566778888999999888876433222     223557888888888776533   


Q ss_pred             -CcccCCCCCCCeEEccCCccccCCccccc-----CCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598          160 -PRWLGNLTRLQCIIMPNNHLEGPIPVEFC-----QLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG  233 (536)
Q Consensus       160 -~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  233 (536)
                       +..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.++.....                   .++. 
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-  221 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-  221 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-
Confidence             34455667888888888877644333332     255777787777776532100                   0111 


Q ss_pred             ccCCCCCccEEEccCCcCCCcc-----chhhhCCCCccEEEccccccccc----ccccccCCCCCCEEecCCCcCCCCCC
Q 045598          234 TFFNCSSLVTLDLSYNRLNGSI-----SDWVDGLSQLSHLILGHNNLEGE----VPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       234 ~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                      .+..+++|++|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            1334455555555555444321     11112344555555555555432    23334445555555555554433222


Q ss_pred             ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC----CcccccCCCCCCEEeCCCccCCCCCc
Q 045598          305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP----IPLQIGNLTRIQTLNLSHNNLTGSIP  380 (536)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~  380 (536)
                      ..+...-                       ....++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+
T Consensus       302 ~~l~~~l-----------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          302 RLLCETL-----------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHHHH-----------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHHHHHh-----------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            1111100                       00013455555555555433    23334445555555555555553322


Q ss_pred             ccccC-----CCCCCEEeCCCCcccc----cCchhhhCCCCCCEEEccCCcCcc
Q 045598          381 STFSN-----LKYVESLDLSNNKLNG----KIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       381 ~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ..+..     .++|++|++++|++++    .++..+..+++|+.|++++|++++
T Consensus       359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            22221     3455566666655553    444555555556666666655553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.9e-31  Score=259.02  Aligned_cols=252  Identities=23%  Similarity=0.271  Sum_probs=140.1

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      +++.++++++.++ .+|..++   ++++.|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4566666665555 5554443   35556666666555555555555666666666665555 33222234555555555


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      +++|.++..... +.  ++|++|++++|.+....+..+.++++|+.|++++|.+..                      .+
T Consensus       109 L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~  163 (332)
T 2ft3_A          109 ISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG  163 (332)
T ss_dssp             CCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred             CCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence            555555532222 11  455555555555544433444445555555555554431                      01


Q ss_pred             CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC
Q 045598          182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG  261 (536)
Q Consensus       182 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  261 (536)
                      ..+..+..+ +|+.|++++|.+++......  .+|+.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+..
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            333344444 45555555555443222111  344444444444432 22233677778888888888887766667777


Q ss_pred             CCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598          262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFD  308 (536)
Q Consensus       262 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  308 (536)
                      +++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            788888888888877 5666677778888888888877766655554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=2.9e-31  Score=257.54  Aligned_cols=295  Identities=21%  Similarity=0.264  Sum_probs=154.9

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      +++.++++++.++ .+|..+.   +.++.|++++|.+++..+..|.++++|++|++++|.++                  
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   89 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------   89 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence            4555555555554 4444332   24455555555555444444555555555555555544                  


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                             +..+..+.++++|++|++++|.+.. +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus        90 -------~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           90 -------KISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             -------CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -------eeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence                   4444444444455555555444442 222221  455555555555554444445555566666666555532


Q ss_pred             --CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhh
Q 045598          182 --PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV  259 (536)
Q Consensus       182 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  259 (536)
                        ..+..+..+++|+.|++++|.++.......  .+|+.|++++|.+.+ +....+..+++|++|++++|.+++..+..+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  236 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSL  236 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence              445556666666666666666653322111  344444444444432 222235666667777777766665555566


Q ss_pred             hCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccc
Q 045598          260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLS  339 (536)
Q Consensus       260 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (536)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|....                            
T Consensus       237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~----------------------------  287 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG----------------------------  287 (330)
T ss_dssp             GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS----------------------------
T ss_pred             cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc----------------------------
Confidence            66666677777666666 5555666666666666666666655544443210                            


Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC--CCcccccCCCCCCEEeCCCCc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG--SIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                        .....+.++.|++++|++..  ..|..|..+++++.++|++|+
T Consensus       288 ------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          288 ------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             ------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ------------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                              00113556666666666642  445666667777777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.1e-34  Score=295.47  Aligned_cols=361  Identities=18%  Similarity=0.145  Sum_probs=258.9

Q ss_pred             CCCCcEEEccCCCCcccCCcc-CCCCCCCCEEEccCCcCccc----cchhHhhCCCCCCEEEcccCccCccCCccc-cCC
Q 045598           45 LPSLYAFNNSMNALDGSIPSS-FGNMKFLQFLDLSNNHLTGE----IPEHLAVGCVNLRFLALSNNNLQGHMFSRN-FNL  118 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l  118 (536)
                      .++|+.|+++++.++...... +..+++|++|++++|.+++.    ++.. +..+++|++|++++|.++......+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            357889999988887544333 77788999999999988732    2333 3677889999999988875433332 234


Q ss_pred             C----CCCEEEccCCcCcc----cCCcCCCCCCccCeeecccCcCCCCCCccc-----CCCCCCCeEEccCCccccCC--
Q 045598          119 T----NLKWLQLEGSRFVG----EIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-----GNLTRLQCIIMPNNHLEGPI--  183 (536)
Q Consensus       119 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~--  183 (536)
                      +    +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+     ...++|++|++++|.+++..  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            4    68888888888774    346677888888888888888754333222     23457888888888777533  


Q ss_pred             --cccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc----cch
Q 045598          184 --PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS----ISD  257 (536)
Q Consensus       184 --~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~  257 (536)
                        +..+..+++|++|++++|.+......                   .+........++|++|++++|.+++.    ++.
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINEAGVR-------------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHH-------------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcchHHHH-------------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence              44455667788888877776532110                   11111112456999999999999864    467


Q ss_pred             hhhCCCCccEEEcccccccccc-----cccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceee
Q 045598          258 WVDGLSQLSHLILGHNNLEGEV-----PIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI  332 (536)
Q Consensus       258 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (536)
                      .+..+++|++|++++|.+++..     +..+..+++|++|++++|.++......+...                      
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~----------------------  279 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV----------------------  279 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH----------------------
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH----------------------
Confidence            7788999999999999987543     2233468999999999998875321111100                      


Q ss_pred             eccccccccceEEccCCcCcCCCcccccC-----CCCCCEEeCCCccCCCC----CcccccCCCCCCEEeCCCCcccccC
Q 045598          333 YQGKVLSLLSGLDLSCNKLIGPIPLQIGN-----LTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDLSNNKLNGKI  403 (536)
Q Consensus       333 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~  403 (536)
                        ...+++|++|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|++++..
T Consensus       280 --l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          280 --LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             --HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             --HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence              011578999999999987654444432     37999999999999865    4566778899999999999998765


Q ss_pred             chhhhC-----CCCCCEEEccCCcCcc----cCCCCccccccCCccccccCcCCC
Q 045598          404 PHQLVE-----LKTLEVFSVAYNNLSG----EIPEWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       404 ~~~~~~-----l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      +..+..     .++|+.|++++|++++    .+|..+..+++++.+++.+|+...
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            555543     7899999999999996    677777788999999999998653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.3e-31  Score=257.44  Aligned_cols=249  Identities=31%  Similarity=0.492  Sum_probs=141.7

Q ss_pred             CCCEEEccCCcCcc--cCCcCCCCCCccCeeeccc-CcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEE
Q 045598          120 NLKWLQLEGSRFVG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL  196 (536)
Q Consensus       120 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  196 (536)
                      +++.|+++++.+.+  ..|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34444444444444  4444455555555555553 44444445555555555555555555554445555555555555


Q ss_pred             EccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCC-CccEEEcccccc
Q 045598          197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLS-QLSHLILGHNNL  275 (536)
Q Consensus       197 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  275 (536)
                      ++++|.+.+..+                       .. +..+++|++|++++|.+++..|..+..++ +|+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p-----------------------~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCC-----------------------hH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            555555442211                       11 34444555555555555444444454444 555555555555


Q ss_pred             cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC
Q 045598          276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI  355 (536)
Q Consensus       276 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  355 (536)
                      ++..|..+..++ |+.|++++|.+++..|..+..                            +++|++|++++|.+++..
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------DKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------TSCCSEEECCSSEECCBG
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------CCCCCEEECCCCceeeec
Confidence            555555555554 555555555555544444433                            445566666666655444


Q ss_pred             cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598          356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  423 (536)
Q Consensus       356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l  423 (536)
                      +. +..+++|++|++++|++++..|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence            43 566777778888888777777777777788888888888877777765 6777788888888773

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=261.06  Aligned_cols=134  Identities=22%  Similarity=0.332  Sum_probs=85.9

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      +++|++|++++|.++. +| .+..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus       184 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             CSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred             ccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence            3445555555555542 22 355566677777777776666666667777777777777777666666666777777777


Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC------------------CCCCCCCCCcccCCCCcCc
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------------ICRSPATMSEASIGNERDD  473 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~------------------~C~~~~~~~~~~~~~~~~~  473 (536)
                      +++|++++..+..+..+++++.+++.+|||.|+|.+.                  .|..|...+++.+...+..
T Consensus       262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~  335 (440)
T 3zyj_A          262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQN  335 (440)
T ss_dssp             CTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----C
T ss_pred             CCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhh
Confidence            7777777666666666677777777777777777542                  4888888888766555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=3.9e-30  Score=260.59  Aligned_cols=209  Identities=23%  Similarity=0.252  Sum_probs=124.7

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCc-CCCCCCccccccchh
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN-LHGPIPSCFDNTTLH  313 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~  313 (536)
                      |.++++|++|++++|.+++..+..+..+++|++|++++|.++...+..|..+++|+.|++++|. +....+..+..    
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~----  194 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG----  194 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT----
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC----
Confidence            4444444445554444444444444444555555555555544334444555555555555422 22222222222    


Q ss_pred             hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEe
Q 045598          314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLD  393 (536)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  393 (536)
                                              +++|++|++++|.+++. | .+..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus       195 ------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          195 ------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             ------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred             ------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence                                    34555555555555532 2 355667777777777777766677777777777777


Q ss_pred             CCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC------------------C
Q 045598          394 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP------------------I  455 (536)
Q Consensus       394 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~------------------~  455 (536)
                      +++|++++..+..|.++++|+.|++++|++++..+..+..+++++.+++.+|||.|+|.+.                  .
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~  328 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGR  328 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCB
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcE
Confidence            7777777666777777777777777777777666666666777777777777777777642                  4


Q ss_pred             CCCCCCCCcccCCCCcCc
Q 045598          456 CRSPATMSEASIGNERDD  473 (536)
Q Consensus       456 C~~~~~~~~~~~~~~~~~  473 (536)
                      |..|...++..+...+..
T Consensus       329 C~~P~~l~g~~l~~~~~~  346 (452)
T 3zyi_A          329 CHAPMHMRGRYLVEVDQA  346 (452)
T ss_dssp             EEESTTTTTCBTTSCCGG
T ss_pred             eCCchHhccchhhccchh
Confidence            778887777766555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=3.5e-30  Score=247.21  Aligned_cols=247  Identities=23%  Similarity=0.273  Sum_probs=115.7

Q ss_pred             EEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC--CcccccCCCCCCEEEccC
Q 045598          123 WLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP--IPVEFCQLDLLQILDISD  200 (536)
Q Consensus       123 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~  200 (536)
                      .++.+++.++ .+|..+.  ++|++|++++|.+....+..|..+++|++|++++|.+...  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4555555544 2233221  3555555555555533333345555555555555554421  123333444455555444


Q ss_pred             CcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc-hhhhCCCCccEEEcccccccccc
Q 045598          201 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS-DWVDGLSQLSHLILGHNNLEGEV  279 (536)
Q Consensus       201 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~  279 (536)
                      |.+..                        ++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus        88 n~i~~------------------------l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           88 NGVIT------------------------MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CSEEE------------------------EEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             Ccccc------------------------Chhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            44331                        1111 4455566666666665554333 34555555555555555555555


Q ss_pred             cccccCCCCCCEEecCCCcCCC-CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCccc
Q 045598          280 PIQLCELNQLQLLDLSNNNLHG-PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ  358 (536)
Q Consensus       280 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  358 (536)
                      +..+..+++|++|++++|.+++ ..|..+..                            +++|++|++++|.+++..|..
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------------l~~L~~L~Ls~n~l~~~~~~~  194 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------------LRNLTFLDLSQCQLEQLSPTA  194 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------CTTCCEEECTTSCCCEECTTT
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhh----------------------------CcCCCEEECCCCCcCCcCHHH
Confidence            5555555555555555555443 22322222                            334444444444444444444


Q ss_pred             ccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC-CCCEEEccCCcCcc
Q 045598          359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSG  425 (536)
Q Consensus       359 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~  425 (536)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|+.|++++|++++
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            44444444444444444443333444444444444444444444444444442 44444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=247.51  Aligned_cols=210  Identities=23%  Similarity=0.215  Sum_probs=143.7

Q ss_pred             CCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC
Q 045598           67 GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE  146 (536)
Q Consensus        67 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  146 (536)
                      ..++...+.+++++.++ .+|..+.   ++|++|++++|.++...+..+.++++|++|++++|.+.+..+..|.++++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34455556777777777 7776552   5788888888888777666777788888888888877776667777777888


Q ss_pred             eeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCc-ccccCCCCCCEEEccCCc-CcccCCCCCCCCCccEEEccCC
Q 045598          147 GLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP-VEFCQLDLLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKN  224 (536)
Q Consensus       147 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n  224 (536)
                      +|++++|.+.+..+..+..+++|++|++++|++..... ..+..+++|+.|++++|. +.                    
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------------  163 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT--------------------  163 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC--------------------
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc--------------------
Confidence            88888777775444447777777777777777765444 456677777777777663 33                    


Q ss_pred             CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598          225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                          .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+
T Consensus       164 ----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          164 ----KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             ----EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             ----ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence                2223336666777777777777776666777777777777777777764333334456777777777777665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=6.2e-29  Score=235.90  Aligned_cols=250  Identities=24%  Similarity=0.271  Sum_probs=144.6

Q ss_pred             CeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 045598          170 QCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN  249 (536)
Q Consensus       170 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  249 (536)
                      ++++.+++.++.+ |..+  .++++.|++++|.+++..+.                        .|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~------------------------~~~~~~~L~~L~l~~n   66 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAA------------------------SFRACRNLTILWLHSN   66 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTT------------------------TTTTCTTCCEEECCSS
T ss_pred             eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHH------------------------HcccCCCCCEEECCCC
Confidence            4566666666532 3222  34666666666666544333                        3555555666666666


Q ss_pred             cCCCccchhhhCCCCccEEEccccc-ccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeecc
Q 045598          250 RLNGSISDWVDGLSQLSHLILGHNN-LEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKN  328 (536)
Q Consensus       250 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (536)
                      .+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..                   
T Consensus        67 ~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------  127 (285)
T 1ozn_A           67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-------------------  127 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------------
T ss_pred             ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC-------------------
Confidence            5555545555555666666666664 44444555555666666666666655554444433                   


Q ss_pred             ceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhh
Q 045598          329 IAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLV  408 (536)
Q Consensus       329 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  408 (536)
                               +++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..+.
T Consensus       128 ---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          128 ---------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ---------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence                     44566666666666555555555666666666666666654444566666666666666666655566666


Q ss_pred             CCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcC
Q 045598          409 ELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERD  472 (536)
Q Consensus       409 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~  472 (536)
                      .+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+..                .|..|...++..+...+.
T Consensus       199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~  278 (285)
T 1ozn_A          199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA  278 (285)
T ss_dssp             TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred             CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence            6666666666666666544444555566666666666666666542                477787777776655554


Q ss_pred             cc
Q 045598          473 DN  474 (536)
Q Consensus       473 ~~  474 (536)
                      .+
T Consensus       279 ~~  280 (285)
T 1ozn_A          279 ND  280 (285)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.7e-29  Score=242.42  Aligned_cols=280  Identities=19%  Similarity=0.142  Sum_probs=164.3

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      |+.....++++++++ .+|..++.   +|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~~---~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCcc-cccccccc---cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCE
Confidence            344444555555555 55554432   5556666665555544445555666666666665555 333333345555666


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCC-cCCCCCCccCeeecccC-cCCCCCCcccCCCCCCCeEEccCC
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNN-SLSGKIPRWLGNLTRLQCIIMPNN  177 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  177 (536)
                      |++++|.++...+..+.++++|++|++++|.+....+ ..+.++++|++|++++| .+....+..+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            6666665554444445555566666666655553332 24555556666666555 244333445555556666666666


Q ss_pred             ccccCCcccccCCCCCCEEEccCCcCcccCCCCC-CCCCccEEEccCCCCCCccccc--ccCCCCCccEEEccCCcCCC-
Q 045598          178 HLEGPIPVEFCQLDLLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRG--TFFNCSSLVTLDLSYNRLNG-  253 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~-  253 (536)
                      .+.+..+..+..+++|++|++++|.+.......+ ..++|+.|++++|.+.+.....  .....+.++.++++++.+.+ 
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            5555555555555566666666555543222222 2455666666665554322111  12345678888898888875 


Q ss_pred             ---ccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598          254 ---SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       254 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                         .+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               356778899999999999999994444446899999999999999886544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2e-28  Score=234.89  Aligned_cols=279  Identities=22%  Similarity=0.242  Sum_probs=222.3

Q ss_pred             CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC--CCcccCCCCCCCeEEc
Q 045598           97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTRLQCIIM  174 (536)
Q Consensus        97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l  174 (536)
                      -+.++.+++.++..+. .+.  ++|++|++++|.+....+..|.++++|++|++++|.+...  .+..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT-GIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCCS-CCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCCC-CCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            3578888888886544 332  7899999999999966666789999999999999998733  2556678999999999


Q ss_pred             cCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc
Q 045598          175 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS  254 (536)
Q Consensus       175 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  254 (536)
                      ++|.+.. .+..+..+++|++|++++|.+.+..+                       ...+..+++|++|++++|.+.+.
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence            9999984 56678899999999999998874322                       12367788999999999998878


Q ss_pred             cchhhhCCCCccEEEcccccccc-cccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeee
Q 045598          255 ISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIY  333 (536)
Q Consensus       255 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (536)
                      .+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..                        
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------  197 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------  197 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC------------------------
Confidence            88888889999999999999886 57888899999999999999998877776654                        


Q ss_pred             ccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCC-CCCEEeCCCCcccccCc--hhhhCC
Q 045598          334 QGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK-YVESLDLSNNKLNGKIP--HQLVEL  410 (536)
Q Consensus       334 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l  410 (536)
                          +++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++++..+  .....+
T Consensus       198 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          198 ----LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             ----CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             ----CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence                67899999999999987787899999999999999999998899999885 99999999999985432  111222


Q ss_pred             CCCCEEEccCCcCcccCCCC
Q 045598          411 KTLEVFSVAYNNLSGEIPEW  430 (536)
Q Consensus       411 ~~L~~L~l~~N~l~~~~~~~  430 (536)
                      ...+.+.+..+.+.+..|..
T Consensus       274 ~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          274 KDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             HHTGGGBSCGGGCBEEESGG
T ss_pred             HhhhhhhccccccccCCchh
Confidence            23333444455555544443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3.9e-27  Score=237.72  Aligned_cols=248  Identities=24%  Similarity=0.242  Sum_probs=186.2

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      ..+.++.++.+++ .+|..++   ++++.|++++|.+++..+..|.++++|++|+|++|.++ .++...+.++++|++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~  118 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE  118 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence            4677888888887 7887665   37888888888888777788888888888888888887 66666667888888888


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCc-CCCCCCcccCCCCCCCeEEccCCccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQCIIMPNNHLE  180 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~  180 (536)
                      |++|.++...+..+..+++|++|++++|.+....+..|.++++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus       119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            88888887777778888888888888888887766778888888888888743 44333446777777777777777776


Q ss_pred             cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598          181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD  260 (536)
Q Consensus       181 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  260 (536)
                      .. | .+..+++|+.|++++|++++..                        +..|..+++|++|++++|.+++..+..|.
T Consensus       199 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          199 EI-P-NLTPLIKLDELDLSGNHLSAIR------------------------PGSFQGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             SC-C-CCTTCSSCCEEECTTSCCCEEC------------------------TTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred             cc-c-ccCCCcccCEEECCCCccCccC------------------------hhhhccCccCCEEECCCCceeEEChhhhc
Confidence            33 2 3566667777777766665432                        23366777778888888877777777777


Q ss_pred             CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC
Q 045598          261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH  300 (536)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  300 (536)
                      .+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            7778888888888877666666777788888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=8.7e-28  Score=227.97  Aligned_cols=225  Identities=23%  Similarity=0.216  Sum_probs=154.3

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      +.++++++.++ .+|..+.   ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus        14 ~~~~c~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCcc-cCCcCCC---CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence            67788877777 6776553   47888888888888766677888888888888888877 4433344677778888887


Q ss_pred             cCc-cCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598          104 NNN-LQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       104 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      +|. ++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            776 6666666777777777777777777766666677777777777777777655555566667777777777766655


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598          183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL  262 (536)
Q Consensus       183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  262 (536)
                      .+..+..+++|+.|++++|.+.+..+                        ..+..+++|++|++++|.+++..+..+..+
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  224 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHP------------------------HAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             CHHHhcCccccCEEECCCCcccccCH------------------------hHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence            55556666666666666666553322                        225566667777777777666555666666


Q ss_pred             CCccEEEcccccccc
Q 045598          263 SQLSHLILGHNNLEG  277 (536)
Q Consensus       263 ~~L~~L~L~~n~l~~  277 (536)
                      ++|+.|++++|++..
T Consensus       225 ~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          225 RALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cccCEEeccCCCccC
Confidence            677777777766653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.4e-30  Score=272.06  Aligned_cols=382  Identities=10%  Similarity=0.032  Sum_probs=206.8

Q ss_pred             CCCCcCEEEccCCcCcccCChhHhhcCCC-CcEEEccCCC-Ccc-cCCccCCCCCCCCEEEccCCcCccccc---hhHhh
Q 045598           19 SHKRLGMLDISNNNFRGHIPVEIADVLPS-LYAFNNSMNA-LDG-SIPSSFGNMKFLQFLDLSNNHLTGEIP---EHLAV   92 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~   92 (536)
                      .+++|++|+++++.+.+..+..+...++. |++|++++|. ++. .++....++++|++|++++|.+++...   ..+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            45666666666666554444444443333 6666666554 111 111122355666666666665543211   11234


Q ss_pred             CCCCCCEEEcccCccCccC----CccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC---CCCCcccCC
Q 045598           93 GCVNLRFLALSNNNLQGHM----FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS---GKIPRWLGN  165 (536)
Q Consensus        93 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~  165 (536)
                      .+++|++|++++|.+++..    +..+.++++|++|++++|.+.+ .+..+..+++|++|+++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            5566666666666654221    2223355666666666665553 3345555666666666542211   122234455


Q ss_pred             CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598          166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  243 (536)
Q Consensus       166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (536)
                      +++|+.++++++... ..+..+..+++|++|++++|.+++....  ...+++|+.|++. +.+.+......+..+++|++
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence            566666666554322 3444555566666666666664432211  1245566666666 22222211222345566666


Q ss_pred             EEccC-----------CcCCCc-cchhhhCCCCccEEEcccccccccccccccC-CCCCCEEecC----CCcCCCCCCcc
Q 045598          244 LDLSY-----------NRLNGS-ISDWVDGLSQLSHLILGHNNLEGEVPIQLCE-LNQLQLLDLS----NNNLHGPIPSC  306 (536)
Q Consensus       244 L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~~~~  306 (536)
                      |++++           +.+++. .......+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++.+.+.
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            66662           344322 1222344666666666666666555444443 6666666664    33443321110


Q ss_pred             ccccchhhhccccceeEEeeccceeeeccccccccceEEccCCc--CcCCCccccc-CCCCCCEEeCCCccCCCC-Cccc
Q 045598          307 FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--LIGPIPLQIG-NLTRIQTLNLSHNNLTGS-IPST  382 (536)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~~  382 (536)
                                           ++...  ...+++|++|++++|.  +++..+..+. .+++|++|++++|++++. .+..
T Consensus       427 ---------------------~~~~~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  483 (592)
T 3ogk_B          427 ---------------------GVRSL--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF  483 (592)
T ss_dssp             ---------------------HHHHH--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred             ---------------------HHHHH--HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence                                 00000  1126788889987543  5544444443 378899999999888752 3445


Q ss_pred             ccCCCCCCEEeCCCCccccc-CchhhhCCCCCCEEEccCCcCccc
Q 045598          383 FSNLKYVESLDLSNNKLNGK-IPHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       383 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      +..+++|++|++++|.+++. .+.....+++|+.|++++|+++..
T Consensus       484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            67788899999999987654 344456788899999999988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.5e-27  Score=238.10  Aligned_cols=248  Identities=22%  Similarity=0.216  Sum_probs=172.4

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      ..+.++.++..++ .+|..+.   ++++.|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~  129 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE  129 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence            3466777777776 6666554   36777777777777766777777777777777777776 45544456677777777


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccC-cCCCCCCcccCCCCCCCeEEccCCccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNN-SLSGKIPRWLGNLTRLQCIIMPNNHLE  180 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~  180 (536)
                      |++|.++...+..+..+++|++|++++|.+....+..|.++++|+.|++++| .+....+..|..+++|++|++++|.+.
T Consensus       130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            7777777666666667777777777777776555556667777777777663 333233334556666666666666665


Q ss_pred             cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598          181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD  260 (536)
Q Consensus       181 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  260 (536)
                      +. | .+..+++|+.|++++|.+++                        +.+..|..+++|++|++++|.+.+..+..|.
T Consensus       210 ~~-~-~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          210 DM-P-NLTPLVGLEELEMSGNHFPE------------------------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             SC-C-CCTTCTTCCEEECTTSCCSE------------------------ECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cc-c-cccccccccEEECcCCcCcc------------------------cCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence            33 2 34455555555555555542                        3333478888999999999999888888888


Q ss_pred             CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC
Q 045598          261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH  300 (536)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  300 (536)
                      .+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            8999999999999998777777888899999999999876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.5e-30  Score=271.90  Aligned_cols=404  Identities=12%  Similarity=0.057  Sum_probs=250.6

Q ss_pred             cCCCCCcCEEEccCCcCc---ccCC-----------hhHhhcCCCCcEEEccCCCCcccCCccCCC-CC-CCCEEEccCC
Q 045598           17 IHSHKRLGMLDISNNNFR---GHIP-----------VEIADVLPSLYAFNNSMNALDGSIPSSFGN-MK-FLQFLDLSNN   80 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~---~~~p-----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~-~L~~L~L~~n   80 (536)
                      +..+++|++|+++++...   +.+|           ..+...+++|+.|++++|.+++..+..+.. ++ +|++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            345677888888764321   1111           222334677888888877776655554544 33 3888888777


Q ss_pred             c-CccccchhHhhCCCCCCEEEcccCccCccCC----ccccCCCCCCEEEccCCcCcc----cCCcCCCCCCccCeeecc
Q 045598           81 H-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMF----SRNFNLTNLKWLQLEGSRFVG----EIPQSLSKCSSLEGLYLN  151 (536)
Q Consensus        81 ~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~  151 (536)
                      . ++...-..+...+++|++|++++|.+++...    .....+++|++|++++|.+.+    .++..+.++++|+.|+++
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG  228 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence            5 2211112233467788888888877654422    123466778888887777652    223334566778888887


Q ss_pred             cCcCCCCCCcccCCCCCCCeEEccCCccc---cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCC
Q 045598          152 NNSLSGKIPRWLGNLTRLQCIIMPNNHLE---GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG  228 (536)
Q Consensus       152 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  228 (536)
                      +|.+.+ .+..+..+++|++|+++.....   ......+..+++|+.+.++++............++|++|++++|.+.+
T Consensus       229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~  307 (592)
T 3ogk_B          229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET  307 (592)
T ss_dssp             SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred             CccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence            777663 5566677777888777653222   223345566677777777665333222222245677777777777544


Q ss_pred             cccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccc-----------ccccccc-cccccCCCCCCEEecCC
Q 045598          229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH-----------NNLEGEV-PIQLCELNQLQLLDLSN  296 (536)
Q Consensus       229 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~-~~~~~~l~~L~~L~l~~  296 (536)
                      ......+..+++|++|+++++...+.++.....+++|++|++++           +.+++.. +.....+++|+.|+++.
T Consensus       308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence            33323356677777777773322223334445567777777773           4444322 22234567777777766


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEcc----CCcCcCC-----CcccccCCCCCCE
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLS----CNKLIGP-----IPLQIGNLTRIQT  367 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~  367 (536)
                      +.+++..+..+.                           ..+++|++|+++    .|.+++.     ++..+.++++|+.
T Consensus       388 ~~l~~~~~~~l~---------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~  440 (592)
T 3ogk_B          388 SDITNESLESIG---------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR  440 (592)
T ss_dssp             SCCCHHHHHHHH---------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred             CCccHHHHHHHH---------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence            665542222111                           125789999997    5667653     3334677999999


Q ss_pred             EeCCCcc--CCCCCcccc-cCCCCCCEEeCCCCcccc-cCchhhhCCCCCCEEEccCCcCccc-CCCCccccccCCcccc
Q 045598          368 LNLSHNN--LTGSIPSTF-SNLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE-IPEWTAQFATFNESSY  442 (536)
Q Consensus       368 L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~l~l  442 (536)
                      |++++|.  +++..+..+ ..+++|++|++++|++++ ..+..+..+++|+.|++++|++++. ++.....+++++.+++
T Consensus       441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred             EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence            9998654  554444433 448999999999999986 3455567899999999999998754 3444456889999999


Q ss_pred             ccCcCC
Q 045598          443 EGNTFL  448 (536)
Q Consensus       443 ~~n~~~  448 (536)
                      ++|+..
T Consensus       521 s~n~it  526 (592)
T 3ogk_B          521 QGYRAS  526 (592)
T ss_dssp             ESCBCC
T ss_pred             cCCcCC
Confidence            999843

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.1e-26  Score=224.32  Aligned_cols=236  Identities=19%  Similarity=0.264  Sum_probs=152.4

Q ss_pred             CCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEE
Q 045598          117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL  196 (536)
Q Consensus       117 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  196 (536)
                      ..++++.|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+.|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3477888888888887 56667777888888888888887 67777888888888888888887 557778888888888


Q ss_pred             EccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccc
Q 045598          197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  276 (536)
Q Consensus       197 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  276 (536)
                      ++++|.+.+..|..+..     .         .. ...+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       156 ~L~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            88887665444432210     0         00 011334445555555555444 33444444444444444444444


Q ss_pred             ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCc
Q 045598          277 GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP  356 (536)
Q Consensus       277 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  356 (536)
                      + +|..+..+                                                    ++|++|++++|.+.+..|
T Consensus       220 ~-l~~~l~~l----------------------------------------------------~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          220 A-LGPAIHHL----------------------------------------------------PKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             C-CCGGGGGC----------------------------------------------------TTCCEEECTTCTTCCBCC
T ss_pred             c-CchhhccC----------------------------------------------------CCCCEEECcCCcchhhhH
Confidence            2 23333344                                                    445555555555555566


Q ss_pred             ccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      ..++.+++|++|+|++|++.+..|..+..+++|++|+|++|++.+.+|..+.++++|+.+++..+.+.
T Consensus       247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            66666777777777777777677777777777777777777777777777777777777777766544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.3e-26  Score=223.91  Aligned_cols=186  Identities=20%  Similarity=0.250  Sum_probs=155.2

Q ss_pred             CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeE
Q 045598           93 GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI  172 (536)
Q Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  172 (536)
                      ...++++|++++|.++ ..+..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4589999999999999 45666888999999999999999 78888999999999999999998 778899999999999


Q ss_pred             EccCCccccCCcccccC---------CCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598          173 IMPNNHLEGPIPVEFCQ---------LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  243 (536)
Q Consensus       173 ~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (536)
                      ++++|++.+..|..+..         +++|++|++++|+++                        .++.. +..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~~-l~~l~~L~~  210 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPAS-IANLQNLKS  210 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCGG-GGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchHh-hcCCCCCCE
Confidence            99998887777766543         555666655555544                        34443 788999999


Q ss_pred             EEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598          244 LDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF  307 (536)
Q Consensus       244 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  307 (536)
                      |++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence            9999999995 55678999999999999999998888888888888888888887665555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.4e-28  Score=235.33  Aligned_cols=239  Identities=21%  Similarity=0.194  Sum_probs=124.2

Q ss_pred             CCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccE
Q 045598          139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQ  218 (536)
Q Consensus       139 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  218 (536)
                      +..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+    .++|+.
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~  103 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIET  103 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence            3444455555555555554444455555555555555555543332  5555555555555555543221    134444


Q ss_pred             EEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccc-cCCCCCCEEecCCC
Q 045598          219 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQL-CELNQLQLLDLSNN  297 (536)
Q Consensus       219 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n  297 (536)
                      |++++|.+.+..+    ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|
T Consensus       104 L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            4444444432211    124567777777777766656566666777777777777765555544 35666777777666


Q ss_pred             cCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCC
Q 045598          298 NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTG  377 (536)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  377 (536)
                      .+++..+..                              .+++|++|++++|.+++. |..+..+++|+.|++++|+++ 
T Consensus       180 ~l~~~~~~~------------------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-  227 (317)
T 3o53_A          180 FIYDVKGQV------------------------------VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-  227 (317)
T ss_dssp             CCCEEECCC------------------------------CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-
T ss_pred             cCccccccc------------------------------ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-
Confidence            655321110                              134455555555555432 222444555555555555555 


Q ss_pred             CCcccccCCCCCCEEeCCCCccc-ccCchhhhCCCCCCEEEcc
Q 045598          378 SIPSTFSNLKYVESLDLSNNKLN-GKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       378 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~  419 (536)
                      .+|..+..+++|+.|++++|++. +..+..+..+++|+.++++
T Consensus       228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            23444455555555555555554 3444444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.1e-25  Score=233.52  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=52.8

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEc
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQL  126 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  126 (536)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.++....    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            4667777777666 4454443  56677777777666 5554    35666666666666654322    4455666666


Q ss_pred             cCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598          127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLS  156 (536)
Q Consensus       127 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  156 (536)
                      ++|.+.+. |.   .+++|+.|++++|.+.
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCS
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCC
Confidence            65555532 22   3344555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=4e-25  Score=229.38  Aligned_cols=113  Identities=26%  Similarity=0.351  Sum_probs=50.6

Q ss_pred             CCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecc
Q 045598           72 LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLN  151 (536)
Q Consensus        72 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  151 (536)
                      +++|++++|.++ .+|..+.   ++|++|++++|.++.+..    .+++|++|++++|+++. +|.   .+++|++|+++
T Consensus        42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            455555555554 4444331   455555555555543222    33455555555555442 222   34455555555


Q ss_pred             cCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          152 NNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       152 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      +|.+.+ +|.   .+++|++|++++|+++.+ |.   .+++|+.|++++|.++
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA  154 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCC
Confidence            555442 222   234455555555544432 11   1244444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.7e-28  Score=233.95  Aligned_cols=274  Identities=18%  Similarity=0.190  Sum_probs=216.7

Q ss_pred             cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598          145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  224 (536)
Q Consensus       145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  224 (536)
                      ++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+ ...+++|+.|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence            4445555555543444456677899999999999998888899999999999999999987665 457789999999999


Q ss_pred             CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598          225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                      .+.+      +...++|++|++++|.+++..+.   .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        91 ~l~~------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           91 YVQE------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             EEEE------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             cccc------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            8853      22348999999999999866544   36789999999999998778788899999999999999887655


Q ss_pred             ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598          305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS  384 (536)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  384 (536)
                      ..+..                           .+++|++|++++|.+++. + ....+++|++|++++|++++. |..+.
T Consensus       162 ~~~~~---------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~  211 (317)
T 3o53_A          162 AELAA---------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQ  211 (317)
T ss_dssp             GGGGG---------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGG
T ss_pred             HHHhh---------------------------ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhc
Confidence            44421                           157899999999999865 3 233589999999999999964 44588


Q ss_pred             CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc-ccCCCCccccccCCccccccCcCCCCCCCCCCCCC
Q 045598          385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSP  459 (536)
Q Consensus       385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~~C~~~  459 (536)
                      .+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++..++.++.+++.+++...+.....|..+
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~  286 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence            9999999999999998 56777889999999999999998 67777777888888888886544443333334433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.3e-27  Score=241.43  Aligned_cols=245  Identities=22%  Similarity=0.212  Sum_probs=131.6

Q ss_pred             CccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEcc
Q 045598          143 SSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS  222 (536)
Q Consensus       143 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  222 (536)
                      ++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|+.|++++|.+++..+    .++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            355555555555554444555555555555555555553333  5555556666665555543221    1333333333


Q ss_pred             CCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc-CCCCCCEEecCCCcCCC
Q 045598          223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLSNNNLHG  301 (536)
Q Consensus       223 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~  301 (536)
                      +|.+.+..+    ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus       108 ~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            333322211    1235566666666666655555555566666666666666655555443 45556666665555543


Q ss_pred             CCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc
Q 045598          302 PIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS  381 (536)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  381 (536)
                      .                                                    .+  ...+++|+.|+|++|.+++..+ 
T Consensus       184 ~----------------------------------------------------~~--~~~l~~L~~L~Ls~N~l~~~~~-  208 (487)
T 3oja_A          184 V----------------------------------------------------KG--QVVFAKLKTLDLSSNKLAFMGP-  208 (487)
T ss_dssp             E----------------------------------------------------EC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred             c----------------------------------------------------cc--cccCCCCCEEECCCCCCCCCCH-
Confidence            2                                                    11  2235566666666666664333 


Q ss_pred             cccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc-ccCCCCccccccCCccccc-------cCcCCCCCCC
Q 045598          382 TFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWTAQFATFNESSYE-------GNTFLCGLPL  453 (536)
Q Consensus       382 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~l~l~-------~n~~~c~~~l  453 (536)
                      .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.+..+.+.       ++++.|.|+.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            35566666666666666663 4445556666666666666665 3444444455555555554       7788887653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-25  Score=208.06  Aligned_cols=186  Identities=25%  Similarity=0.272  Sum_probs=126.8

Q ss_pred             CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI  318 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  318 (536)
                      +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..         
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------  107 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ---------  107 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc---------
Confidence            35666666666666555555666666666666666666444445566666667777666666555544433         


Q ss_pred             cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                         +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus       108 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A          108 -------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             -------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence                               4567777777777766666667777777777777777776666667777777777777777


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      +++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            776666667777777777777777776666666667777777777777777775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.2e-27  Score=229.80  Aligned_cols=249  Identities=23%  Similarity=0.195  Sum_probs=158.1

Q ss_pred             CCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCc-ccCCccCC-------CCCCCCEEEccCCcCccccchhH
Q 045598           19 SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALD-GSIPSSFG-------NMKFLQFLDLSNNHLTGEIPEHL   90 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~   90 (536)
                      ..++|+.|++++|.+  .+|..++.   .|+.|++++|.++ ..++..+.       ++++|++|++++|.+++.+|..+
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            345677777777777  56776666   2677777777663 23444343       56777777777777766666654


Q ss_pred             h-hCCCCCCEEEcccCccCccCCccccCC-----CCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC--CCcc
Q 045598           91 A-VGCVNLRFLALSNNNLQGHMFSRNFNL-----TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRW  162 (536)
Q Consensus        91 ~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~  162 (536)
                      + ..+++|++|++++|.+++. +..+..+     ++|++|++++|++.+..+..+.++++|++|++++|.+.+.  .+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            3 5667777777777777655 4545444     6677777777777666656666777777777777665432  1222


Q ss_pred             c--CCCCCCCeEEccCCcccc---CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCC
Q 045598          163 L--GNLTRLQCIIMPNNHLEG---PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN  237 (536)
Q Consensus       163 ~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  237 (536)
                      +  ..+++|++|++++|++++   .....+..+++|+.|++++|++++.                       .+...+..
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~~  251 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA-----------------------AGAPSCDW  251 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------CCCSCCCC
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------cchhhhhh
Confidence            2  566667777777666652   1123334556666666666666543                       22222455


Q ss_pred             CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCC
Q 045598          238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG  301 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  301 (536)
                      +++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            677788888888777 4555444  6788888888887754 54 7777888888888887764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.8e-27  Score=227.24  Aligned_cols=209  Identities=23%  Similarity=0.235  Sum_probs=124.6

Q ss_pred             CCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCcc-CCcccc-------CCCCCCEEEccCCcCcccCCc
Q 045598           66 FGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH-MFSRNF-------NLTNLKWLQLEGSRFVGEIPQ  137 (536)
Q Consensus        66 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-------~l~~L~~L~L~~n~i~~~~~~  137 (536)
                      +++.++|+.|++++|.+  .+|..+...   |++|++++|.++.. .+..+.       ++++|++|++++|++.+..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            45556777777888777  567666433   67777777777432 222222       567777777777777766666


Q ss_pred             CC--CCCCccCeeecccCcCCCCCCcccCCC-----CCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCC
Q 045598          138 SL--SKCSSLEGLYLNNNSLSGKIPRWLGNL-----TRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSC  210 (536)
Q Consensus       138 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  210 (536)
                      .+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|++.+..+..+..+++|++|++++|++.+..+  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            54  6777777777777777755 5555555     677777777777766666666666677777776666542100  


Q ss_pred             CCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCc---cchhhhCCCCccEEEccccccccccc-ccccCC
Q 045598          211 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS---ISDWVDGLSQLSHLILGHNNLEGEVP-IQLCEL  286 (536)
Q Consensus       211 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l  286 (536)
                                        ..+...+..+++|++|++++|.+++.   ....+..+++|+.|++++|.+++..| ..+..+
T Consensus       191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence                              01111135666777777777766621   11233445566666666665554432 223334


Q ss_pred             CCCCEEecCCCcCC
Q 045598          287 NQLQLLDLSNNNLH  300 (536)
Q Consensus       287 ~~L~~L~l~~n~~~  300 (536)
                      ++|++|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            55555555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.8e-25  Score=209.63  Aligned_cols=208  Identities=26%  Similarity=0.271  Sum_probs=160.8

Q ss_pred             ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecC
Q 045598          216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS  295 (536)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  295 (536)
                      ++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            444444444442 2333347778888888888888887666778888888888888888887777778888888888888


Q ss_pred             CCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC-CcccccCCCCCCEEeCCCcc
Q 045598          296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP-IPLQIGNLTRIQTLNLSHNN  374 (536)
Q Consensus       296 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~  374 (536)
                      +|.+.+..+..+..                            +++|++|++++|.+.+. .|..+..+++|++|++++|+
T Consensus       109 ~n~l~~~~~~~~~~----------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          109 ETNLASLENFPIGH----------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TSCCCCSTTCCCTT----------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCccccCchhccc----------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            88887766555543                            67888888888888764 57888888999999999999


Q ss_pred             CCCCCcccccCCCCCC----EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598          375 LTGSIPSTFSNLKYVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       375 l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      +++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+++++.+++.+||+.|+
T Consensus       161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             CCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            9877777777777777    889999999866655554 44799999999999877777777888899999999999998


Q ss_pred             CCC
Q 045598          451 LPL  453 (536)
Q Consensus       451 ~~l  453 (536)
                      |+.
T Consensus       240 c~~  242 (276)
T 2z62_A          240 CPR  242 (276)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=6.3e-29  Score=261.34  Aligned_cols=251  Identities=15%  Similarity=0.165  Sum_probs=139.1

Q ss_pred             cCCCCCcCEEEccCCcCccc---CC-----------hhHhhcCCCCcEEEccCCCCcccCCccCC-CCCCCCEEEccCC-
Q 045598           17 IHSHKRLGMLDISNNNFRGH---IP-----------VEIADVLPSLYAFNNSMNALDGSIPSSFG-NMKFLQFLDLSNN-   80 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~~~---~p-----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n-   80 (536)
                      +..+++|+.|+++++.....   .|           ..+...+++|+.|+++++.+++..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            34567888888887642211   11           23344577888888888887765555554 5788888888887 


Q ss_pred             cCccccchhHhhCCCCCCEEEcccCccCccCCccc----cCCCCCCEEEccCCc--Ccc-cCCcCCCCCCccCeeecccC
Q 045598           81 HLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN----FNLTNLKWLQLEGSR--FVG-EIPQSLSKCSSLEGLYLNNN  153 (536)
Q Consensus        81 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--i~~-~~~~~~~~l~~L~~L~l~~n  153 (536)
                      .+++.....+...+++|++|++++|.+++.....+    ..+++|++|+++++.  +.. ..+..+..+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            45422233444578888888888887765443333    266788888888775  211 11112234678888888877


Q ss_pred             cCCCCCCcccCCCCCCCeEEccCCc-------cccCCcccccCCCCCCEE-EccCCcCcccCCCCC-CCCCccEEEccCC
Q 045598          154 SLSGKIPRWLGNLTRLQCIIMPNNH-------LEGPIPVEFCQLDLLQIL-DISDNNISGSLPSCF-HPLSIKQVHLSKN  224 (536)
Q Consensus       154 ~~~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~-~~~~L~~L~l~~n  224 (536)
                      ...+..+..+..+++|++|+++.+.       +.+ .+..+.++++|+.+ .+.+.... ..+... ..++|++|++++|
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~  299 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYA  299 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTC
T ss_pred             CcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCC
Confidence            3222245556667778888755442       221 22245566666666 22222111 111111 3455666666666


Q ss_pred             CCCCcccccccCCCCCccEEEccCCcCCC-ccchhhhCCCCccEEEc
Q 045598          225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNG-SISDWVDGLSQLSHLIL  270 (536)
Q Consensus       225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L  270 (536)
                      .+.+......+..+++|++|++++| +.+ ..+.....+++|++|++
T Consensus       300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            5433222222345566666666655 221 11222233556666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=7.8e-25  Score=207.35  Aligned_cols=183  Identities=27%  Similarity=0.256  Sum_probs=140.9

Q ss_pred             CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI  318 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  318 (536)
                      ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+  ...+++|++|++++|.++. .|..+..         
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~---------   98 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQS-LPLLGQT---------   98 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSS-CCCCTTT---------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCCc-Cchhhcc---------
Confidence            466777777777776666677777777777777777774333  2567788888888887763 3333322         


Q ss_pred             cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                         +++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus        99 -------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           99 -------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             -------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence                               5678888888888887777788888888888888888887777778888888889999888


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      ++...+..|..+++|+.|++++|+++ .+|..+....+++.+++.+|||.|+|..
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            88776677788888999999998888 5666666777888888999999998864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.9e-26  Score=233.35  Aligned_cols=234  Identities=21%  Similarity=0.165  Sum_probs=152.8

Q ss_pred             CCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEcc
Q 045598           96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP  175 (536)
Q Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  175 (536)
                      +|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.     ...++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEEECc
Confidence            67777777777776666666677777777777776664433  66666666666666665521     122555666666


Q ss_pred             CCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCcc
Q 045598          176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI  255 (536)
Q Consensus       176 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  255 (536)
                      +|.+.+..+.   .+++|+.|++                       ++|.+.+..+. .+..+++|+.|++++|.+++..
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L-----------------------~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYL-----------------------ANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEEC-----------------------CSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcCCCCCcc---ccCCCCEEEC-----------------------CCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence            6555543322   2344445554                       44444333333 3778899999999999999888


Q ss_pred             chhhh-CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeec
Q 045598          256 SDWVD-GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ  334 (536)
Q Consensus       256 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (536)
                      |..+. .+++|+.|++++|.+++..+  ...+++|+.|++++|.+++.++                              
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~------------------------------  208 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP------------------------------  208 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG------------------------------
T ss_pred             hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH------------------------------
Confidence            87775 79999999999999986532  3346777777777776653222                              


Q ss_pred             cccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc-ccCchhhhCCCCC
Q 045598          335 GKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN-GKIPHQLVELKTL  413 (536)
Q Consensus       335 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  413 (536)
                                             .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|
T Consensus       209 -----------------------~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          209 -----------------------EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             -----------------------GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             -----------------------hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence                                   24555666777777777663 4555666777777777777776 4555666667777


Q ss_pred             CEEEcc
Q 045598          414 EVFSVA  419 (536)
Q Consensus       414 ~~L~l~  419 (536)
                      +.++++
T Consensus       265 ~~l~~~  270 (487)
T 3oja_A          265 QTVAKQ  270 (487)
T ss_dssp             HHHHHH
T ss_pred             cEEecc
Confidence            766665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.3e-24  Score=203.30  Aligned_cols=223  Identities=23%  Similarity=0.263  Sum_probs=166.8

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      ..++.++.++. .+|..+.   ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus        10 ~~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           10 ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TEEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred             ceEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence            35666666776 7777664   47899999999998877778999999999999999998 6666666789999999999


Q ss_pred             cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCC-CCcccCCCCCCCeEEccCCccccC
Q 045598          104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      +|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .|..+..+++|++|++++|++++.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            9999888888888999999999999998877766788999999999999998763 578888899999999999998877


Q ss_pred             CcccccCCCCCC----EEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCC
Q 045598          183 IPVEFCQLDLLQ----ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN  252 (536)
Q Consensus       183 ~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~  252 (536)
                      .+..+..+++|+    .|++++|.+.+..+..+...+|+.|++++|.+. .++...|..+++|++|++++|++.
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence            777777666666    788888888766554444334444444444443 222222344444444444444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=4.1e-28  Score=255.11  Aligned_cols=380  Identities=14%  Similarity=0.094  Sum_probs=252.2

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCC-CCccc-CCccCCCCCCCCEEEccCCcCccccchh---Hhh
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMN-ALDGS-IPSSFGNMKFLQFLDLSNNHLTGEIPEH---LAV   92 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~   92 (536)
                      ..+++|++|+++++.+.+..+..+...+++|+.|++++| .+++. ++..+.++++|++|++++|.+++..+..   +..
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            367899999999999987777788766899999999998 45432 3344558999999999999877433322   224


Q ss_pred             CCCCCCEEEcccCc--cCccCC-ccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCc-------CCCCCCcc
Q 045598           93 GCVNLRFLALSNNN--LQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-------LSGKIPRW  162 (536)
Q Consensus        93 ~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~  162 (536)
                      .+++|++|++++|.  +..... ..+..+++|++|++++|...+..+..+..+++|++|++..+.       +. ..+..
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~  260 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA  260 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence            67899999999986  221111 112357999999999983332356667788999999976543       22 12335


Q ss_pred             cCCCCCCCeE-EccCCccccCCcccccCCCCCCEEEccCCcCcccCCC--CCCCCCccEEEccCCCCCCcccccccCCCC
Q 045598          163 LGNLTRLQCI-IMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPS--CFHPLSIKQVHLSKNMLHGQLKRGTFFNCS  239 (536)
Q Consensus       163 ~~~l~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  239 (536)
                      +.++++|+.+ .+.+... ...+..+..+++|++|++++|.+++....  ...+++|+.|++.+| +.+.........++
T Consensus       261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence            6778888888 3433322 23344444678899999998886543211  125678999999887 33222222234578


Q ss_pred             CccEEEccC---------CcCCCccchhh-hCCCCccEEEccccccccccccccc-CCCCCCEEecC--C----CcCCCC
Q 045598          240 SLVTLDLSY---------NRLNGSISDWV-DGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLS--N----NNLHGP  302 (536)
Q Consensus       240 ~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~  302 (536)
                      +|++|++.+         +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++..
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            999998843         34443322223 3488999998888888766555554 58899999998  3    333322


Q ss_pred             CCc-cccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccC-CCCCCEEeCCCccCCCCCc
Q 045598          303 IPS-CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGN-LTRIQTLNLSHNNLTGSIP  380 (536)
Q Consensus       303 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~  380 (536)
                      ..+ .+..                      +  ...+++|++|++++ .+++..+..+.. +++|+.|+|++|.+++...
T Consensus       419 ~~~~~~~~----------------------l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~  473 (594)
T 2p1m_B          419 PLDIGFGA----------------------I--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM  473 (594)
T ss_dssp             CTHHHHHH----------------------H--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred             chhhHHHH----------------------H--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence            111 0000                      0  01256788888877 565554445544 7888888888888875444


Q ss_pred             ccc-cCCCCCCEEeCCCCcccccCch-hhhCCCCCCEEEccCCcCcc
Q 045598          381 STF-SNLKYVESLDLSNNKLNGKIPH-QLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       381 ~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++.
T Consensus       474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            444 6678888888888888644333 33457888888888888753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.8e-23  Score=196.35  Aligned_cols=179  Identities=23%  Similarity=0.280  Sum_probs=137.9

Q ss_pred             CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEE
Q 045598           21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL  100 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  100 (536)
                      .+.+.+++++++++ .+|..++   ++++.|++++|.+++..+.+|.++++|++|++++|.++ .++...+..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence            45788999999888 7887665   47889999999888777778889999999999999888 7787777788888888


Q ss_pred             EcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccc
Q 045598          101 ALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE  180 (536)
Q Consensus       101 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  180 (536)
                      ++++|.++...+..+.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            88888888777777777888888888888877766666777777777777777777555555667777777777777776


Q ss_pred             cCCcccccCCCCCCEEEccCCcCc
Q 045598          181 GPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       181 ~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      +..+..|..+++|+.|++++|+++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EeChhHhccCCCcCEEECCCCcCC
Confidence            655555666666666666666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.1e-24  Score=201.69  Aligned_cols=225  Identities=23%  Similarity=0.258  Sum_probs=163.7

Q ss_pred             cCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCC
Q 045598          145 LEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN  224 (536)
Q Consensus       145 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  224 (536)
                      +..+++.++.+.+.  .....+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+                   
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-------------------   77 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-------------------   77 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-------------------
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-------------------
Confidence            33444444444322  2234456666666666665522  235556666666666665542                   


Q ss_pred             CCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCC
Q 045598          225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIP  304 (536)
Q Consensus       225 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  304 (536)
                           ++  .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        78 -----~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           78 -----IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             -----CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence                 11  26677788888888888877767777778888888888888886666667888888888888888887666


Q ss_pred             ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCccccc
Q 045598          305 SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFS  384 (536)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  384 (536)
                      ..+..                            +++|++|++++|.+++..+..++.+++|++|++++|++++..+..+.
T Consensus       151 ~~~~~----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (272)
T 3rfs_A          151 GVFDK----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD  202 (272)
T ss_dssp             TTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             HHhcc----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence            55544                            56788888888888877777788899999999999999988888889


Q ss_pred             CCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598          385 NLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  434 (536)
Q Consensus       385 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  434 (536)
                      .+++|++|++++|.+.+       .+++|+.+++..|.++|.+|.+++.+
T Consensus       203 ~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            99999999999998874       35678889999999999988876544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=7.5e-23  Score=193.71  Aligned_cols=185  Identities=21%  Similarity=0.175  Sum_probs=156.2

Q ss_pred             CcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598           16 PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV   95 (536)
Q Consensus        16 ~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   95 (536)
                      .+.++++++.+++++++++ .+|..++   +.++.|++++|.+++..+..|.++++|++|++++|.++ .++..  ..++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCC
Confidence            3678899999999999998 8887775   48999999999999888889999999999999999998 66653  5788


Q ss_pred             CCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEcc
Q 045598           96 NLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP  175 (536)
Q Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  175 (536)
                      +|++|++++|.++. .+..+..+++|++|++++|++.+..+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus        78 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            99999999999884 45567888999999999999887777788889999999999998887666777888889999999


Q ss_pred             CCccccCCcccccCCCCCCEEEccCCcCcccCC
Q 045598          176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLP  208 (536)
Q Consensus       176 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  208 (536)
                      +|+++...+..|..+++|+.|++++|+++....
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence            998887777777888888888888888874433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=1.1e-22  Score=188.68  Aligned_cols=180  Identities=26%  Similarity=0.288  Sum_probs=135.2

Q ss_pred             CccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEec
Q 045598          215 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDL  294 (536)
Q Consensus       215 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  294 (536)
                      ..+.++++++.+. .++.. +.  ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567777777764 44443 22  57788888888887777777778888888888888888767777778888888888


Q ss_pred             CCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc
Q 045598          295 SNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN  374 (536)
Q Consensus       295 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  374 (536)
                      ++|.+++..+..+..                            +++|++|++++|.+++..+..|..+++|++|+|++|.
T Consensus        91 ~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A           91 ANNQLASLPLGVFDH----------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhHhcc----------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence            888887666665544                            5678888888888876666667778888888888888


Q ss_pred             CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598          375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       375 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      +++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            8766666777788888888888888777676777788888888888887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.7e-22  Score=189.92  Aligned_cols=181  Identities=24%  Similarity=0.242  Sum_probs=103.3

Q ss_pred             CCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEE
Q 045598          213 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLL  292 (536)
Q Consensus       213 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  292 (536)
                      +.+|+.|++.+|.+.. ++  .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            4456666666665532 22  145566666666666665542  245556666666666666665555555566666666


Q ss_pred             ecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCC
Q 045598          293 DLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH  372 (536)
Q Consensus       293 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  372 (536)
                      ++++|.+++..+..+..                            +++|++|++++|.+++..+..+..+++|++|++++
T Consensus       115 ~L~~n~l~~~~~~~~~~----------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDK----------------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             ECTTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ECCCCcCCccCHHHhcc----------------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            66666665554444433                            44566666666666555555555566666666666


Q ss_pred             ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598          373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       373 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            666655555555566666666666666655555555566666666666655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=2.4e-22  Score=186.42  Aligned_cols=180  Identities=22%  Similarity=0.275  Sum_probs=105.2

Q ss_pred             CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598          240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR  319 (536)
Q Consensus       240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  319 (536)
                      +.++++++++.++. +|..+.  ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..          
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------   81 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD----------   81 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT----------
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc----------
Confidence            34556666665552 332222  45666666666666555555666666666666666666555544433          


Q ss_pred             ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598          320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL  399 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  399 (536)
                                        +++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++
T Consensus        82 ------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A           82 ------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             ------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC
Confidence                              44566666666666655555556666666666666666655555556666666666666666


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598          400 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      ++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+|++.|+
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            655555566666666666666666655555555556666666666666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.88  E-value=1.2e-22  Score=184.20  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=79.5

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  419 (536)
                      +|++|++++|.+.+..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence            44444444444444444555555555555555555554444445555555555555555555555555555555555565


Q ss_pred             CCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598          420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL  475 (536)
Q Consensus       420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~  475 (536)
                      +|++++..+..+..+++++.+++.+|||.|+|++.                .|..|...+++.+..++.+++
T Consensus       137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~  208 (220)
T 2v9t_B          137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF  208 (220)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGC
T ss_pred             CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHC
Confidence            55555555555555555556666666666665432                588898888887777766554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.8e-22  Score=184.65  Aligned_cols=139  Identities=19%  Similarity=0.193  Sum_probs=80.9

Q ss_pred             CcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCCCCCCEEEccc-CccCcc
Q 045598           33 FRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGCVNLRFLALSN-NNLQGH  110 (536)
Q Consensus        33 ~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~  110 (536)
                      ++ .+|. +.   ++++.|++++|.+++..+.+|.++++|++|++++|. ++ .++...+.++++|++|++++ |.++..
T Consensus        23 l~-~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           23 IQ-RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             CS-SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             cc-ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            44 5665 32   367777777777776666667777777777777775 66 56655556667777777776 666666


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC---eeecccC-cCCCCCCcccCCCCCCC-eEEccCCcc
Q 045598          111 MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE---GLYLNNN-SLSGKIPRWLGNLTRLQ-CIIMPNNHL  179 (536)
Q Consensus       111 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~  179 (536)
                      .+..+.++++|++|++++|.+.+ +|. +..+++|+   .|++++| .+.+..+..|..+++|+ +|++++|++
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            55566666666666666666553 333 44444444   5555554 44433333334444444 444444333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.4e-23  Score=205.91  Aligned_cols=182  Identities=23%  Similarity=0.206  Sum_probs=80.2

Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCC----cCCCCCC-ccCeeecccCcCCCCCCcccCCC-----CCC
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP----QSLSKCS-SLEGLYLNNNSLSGKIPRWLGNL-----TRL  169 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L  169 (536)
                      ++++.|.+++..+..+...++|++|++++|.+.+..+    ..+.+++ +|++|++++|.+.+..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            3455555554444433344445555555555544333    3344444 45555555555544333333332     445


Q ss_pred             CeEEccCCccccCCcccc----cCC-CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCC-CCCccE
Q 045598          170 QCIIMPNNHLEGPIPVEF----CQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVT  243 (536)
Q Consensus       170 ~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~  243 (536)
                      ++|++++|.+++..+..+    ... ++|+.|++++|.+++..+.                   .+. ..+.. .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-------------------~l~-~~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-------------------EFK-QAFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-------------------HHH-HHHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-------------------HHH-HHHHhCCCceeE
Confidence            555555544443333322    122 3444444444444321110                   000 01222 245666


Q ss_pred             EEccCCcCCCccc----hhhhCCC-CccEEEccccccccccccc----ccCC-CCCCEEecCCCcCCC
Q 045598          244 LDLSYNRLNGSIS----DWVDGLS-QLSHLILGHNNLEGEVPIQ----LCEL-NQLQLLDLSNNNLHG  301 (536)
Q Consensus       244 L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~~~~  301 (536)
                      |++++|.+++...    ..+..++ +|++|++++|.+++..+..    +..+ ++|++|++++|.+++
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            6666666553222    2223333 5666666666555444322    2233 356666666555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.2e-22  Score=181.55  Aligned_cols=202  Identities=17%  Similarity=0.179  Sum_probs=165.4

Q ss_pred             ccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCC-CcccCCccCCCCCCCCEEEccC-CcCccccch
Q 045598           11 GPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNA-LDGSIPSSFGNMKFLQFLDLSN-NHLTGEIPE   88 (536)
Q Consensus        11 ~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~   88 (536)
                      ..+|. +  .++|++|++++|+++ .+|...+..+++|+.|++++|. ++...+.+|.++++|++|++++ |.++ .++.
T Consensus        24 ~~ip~-~--~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~   98 (239)
T 2xwt_C           24 QRIPS-L--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDP   98 (239)
T ss_dssp             SSCCC-C--CTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECT
T ss_pred             cccCC-C--CCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCH
Confidence            35665 3  358999999999999 6666555568999999999997 8877777999999999999999 9998 7887


Q ss_pred             hHhhCCCCCCEEEcccCccCccCCccccCCCCCC---EEEccCC-cCcccCCcCCCCCCccC-eeecccCcCCCCCCccc
Q 045598           89 HLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLK---WLQLEGS-RFVGEIPQSLSKCSSLE-GLYLNNNSLSGKIPRWL  163 (536)
Q Consensus        89 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~  163 (536)
                      ..+.++++|++|++++|.+++.. . +..+++|+   +|++++| .+....+..|.++++|+ .|++++|.+....+..+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence            77789999999999999998743 3 78888888   9999999 99888778899999999 99999999984444445


Q ss_pred             CCCCCCCeEEccCCc-cccCCcccccCC-CCCCEEEccCCcCcccCCCCCCCCCccEEEcc
Q 045598          164 GNLTRLQCIIMPNNH-LEGPIPVEFCQL-DLLQILDISDNNISGSLPSCFHPLSIKQVHLS  222 (536)
Q Consensus       164 ~~l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  222 (536)
                      .. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++++..+.  .+.+|+.|++.
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred             CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence            55 899999999995 887778888998 9999999999988754332  23344444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.3e-23  Score=206.16  Aligned_cols=212  Identities=20%  Similarity=0.191  Sum_probs=112.5

Q ss_pred             EEccCCCCcccCCccCCCCCCCCEEEccCCcCccccch----hHhhCCC-CCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598           51 FNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPE----HLAVGCV-NLRFLALSNNNLQGHMFSRNFNLTNLKWLQ  125 (536)
Q Consensus        51 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  125 (536)
                      +.++.|.+++.+|..+...++|++|++++|.++ ..+.    ..+..++ +|++|++++|.++...+..+..+       
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence            456666666655555555555666666666665 3332    2334455 56666666665554443333322       


Q ss_pred             ccCCcCcccCCcCCCC-CCccCeeecccCcCCCCCCcc----cCCC-CCCCeEEccCCccccCCcccc----cC-CCCCC
Q 045598          126 LEGSRFVGEIPQSLSK-CSSLEGLYLNNNSLSGKIPRW----LGNL-TRLQCIIMPNNHLEGPIPVEF----CQ-LDLLQ  194 (536)
Q Consensus       126 L~~n~i~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~  194 (536)
                                   +.. .++|++|++++|.+.+..+..    +..+ ++|++|++++|.+++..+..+    .. .++|+
T Consensus        75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence                         000 144555555555444333322    2223 566666666666654444332    22 24677


Q ss_pred             EEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCC-CccEEEccCCcCCCccchhh----hCC-CCccEE
Q 045598          195 ILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGSISDWV----DGL-SQLSHL  268 (536)
Q Consensus       195 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L  268 (536)
                      +|++++|.+++....                   .+... +...+ +|++|++++|.+++..+..+    ..+ ++|++|
T Consensus       142 ~L~Ls~N~l~~~~~~-------------------~l~~~-l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          142 SLNLRGNDLGIKSSD-------------------ELIQI-LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             EEECTTSCGGGSCHH-------------------HHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             EEEccCCcCCHHHHH-------------------HHHHH-HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence            777777766532110                   11111 23333 77777777777765554433    334 478888


Q ss_pred             Eccccccccc----ccccccC-CCCCCEEecCCCcCCCCC
Q 045598          269 ILGHNNLEGE----VPIQLCE-LNQLQLLDLSNNNLHGPI  303 (536)
Q Consensus       269 ~L~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~  303 (536)
                      ++++|.+++.    ++..+.. .++|++|++++|.+++..
T Consensus       202 ~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            8888877752    3334444 347778888777766543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=5.9e-22  Score=189.97  Aligned_cols=208  Identities=24%  Similarity=0.218  Sum_probs=110.8

Q ss_pred             CCCCEEEccCCcCcccCCcCC--CCCCccCeeecccCcCCCCCC----cccCCCCCCCeEEccCCccccCCcccccCCCC
Q 045598          119 TNLKWLQLEGSRFVGEIPQSL--SKCSSLEGLYLNNNSLSGKIP----RWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL  192 (536)
Q Consensus       119 ~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  192 (536)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666655555555  566666666666666654333    22334566666666666666555556666666


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch---hhhCCCCccEEE
Q 045598          193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD---WVDGLSQLSHLI  269 (536)
Q Consensus       193 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~  269 (536)
                      |++|++++|++.+..                    +......+..+++|++|++++|.++...+.   .+..+++|++|+
T Consensus       171 L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~  230 (310)
T 4glp_A          171 LTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD  230 (310)
T ss_dssp             CCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred             CCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence            666666666543210                    000111134556666666666666521111   234445555555


Q ss_pred             cccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCC
Q 045598          270 LGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCN  349 (536)
Q Consensus       270 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  349 (536)
                      +++|.+++..|..+..+.                                                 .+++|++|++++|
T Consensus       231 Ls~N~l~~~~p~~~~~~~-------------------------------------------------~~~~L~~L~Ls~N  261 (310)
T 4glp_A          231 LSHNSLRATVNPSAPRCM-------------------------------------------------WSSALNSLNLSFA  261 (310)
T ss_dssp             CTTSCCCCCCCSCCSSCC-------------------------------------------------CCTTCCCEECCSS
T ss_pred             CCCCCCCccchhhHHhcc-------------------------------------------------CcCcCCEEECCCC
Confidence            555555544343333331                                                 0234555555555


Q ss_pred             cCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          350 KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       350 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                      .++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            555 3344332  5677777777777643 22 566677777777777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3.3e-23  Score=201.49  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             cccceEEccCCc-CcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          339 SLLSGLDLSCNK-LIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       339 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      ++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+.  .++..|
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L  298 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL  298 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred             CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence            344444444444 333444455666777777777774 22111124566777777777777 4322222221  224555


Q ss_pred             EccCCcCcccCCCCc
Q 045598          417 SVAYNNLSGEIPEWT  431 (536)
Q Consensus       417 ~l~~N~l~~~~~~~~  431 (536)
                      ++++|++++..|...
T Consensus       299 ~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          299 QINCSHFTTIARPTI  313 (336)
T ss_dssp             EESCCCSCCTTCSSC
T ss_pred             EEecccCccccCCcc
Confidence            677787777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.4e-23  Score=207.95  Aligned_cols=166  Identities=19%  Similarity=0.254  Sum_probs=106.7

Q ss_pred             cCCCCCccEEEccCCcCCCccchhh----hCC---------CCccEEEccccccc-cccc---ccccCCCCCCEEecCCC
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWV----DGL---------SQLSHLILGHNNLE-GEVP---IQLCELNQLQLLDLSNN  297 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~~L~l~~n  297 (536)
                      +..+++|++|++++|.+++..+..+    ..+         ++|++|++++|.++ ...+   ..+..+++|++|++++|
T Consensus       118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4455666666666666543322222    222         66677777766665 2233   34556667777777777


Q ss_pred             cCCCC-----CCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc----CCCcccccCCCCCCEE
Q 045598          298 NLHGP-----IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI----GPIPLQIGNLTRIQTL  368 (536)
Q Consensus       298 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L  368 (536)
                      .++..     .+..+.                            .+++|++|++++|.++    ..+|..+..+++|+.|
T Consensus       198 ~l~~~g~~~l~~~~l~----------------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          198 GIRPEGIEHLLLEGLA----------------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCCHHHHHHHHHTTGG----------------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCHhHHHHHHHHHhh----------------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            65521     111111                            1456777777777764    4566677888888888


Q ss_pred             eCCCccCCCC----Cccccc--CCCCCCEEeCCCCcccc----cCchhh-hCCCCCCEEEccCCcCcccCC
Q 045598          369 NLSHNNLTGS----IPSTFS--NLKYVESLDLSNNKLNG----KIPHQL-VELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       369 ~L~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      +|++|.+++.    ++..+.  .+++|++|+|++|++++    .+|..+ .++++|+.|++++|++++..+
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8888888754    355553  37889999999998886    366666 568889999999998886553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8.6e-21  Score=185.04  Aligned_cols=243  Identities=19%  Similarity=0.148  Sum_probs=164.4

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE-EEc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF-LAL  102 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L  102 (536)
                      ++++.++++++ ++|..++   ++++.|++++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56788888887 7887764   478888888888886666678888888888888888765677766677777665 445


Q ss_pred             ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598          103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      +.|+++.+.+..+..+++|++|++++|++....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            567777666666677777777777777666544444444444555555432                       223323


Q ss_pred             CcccccCCC-CCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC
Q 045598          183 IPVEFCQLD-LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG  261 (536)
Q Consensus       183 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  261 (536)
                      .+..|..+. .++.|++++|+++.+.+..+...+++.+.+.+++..+.++..+|..+++|++|++++|+++...+..   
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence            333333332 4566666777666666666666677777776544446777777899999999999999998655544   


Q ss_pred             CCCccEEEcccccccccccccccCCCCCCEEecCCC
Q 045598          262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNN  297 (536)
Q Consensus       262 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  297 (536)
                      +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4556666665554444566 3788899999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.86  E-value=8.5e-22  Score=178.49  Aligned_cols=192  Identities=22%  Similarity=0.269  Sum_probs=115.8

Q ss_pred             cEEEccCCcCCCccchhhhCCCCccEEEccccccccccc-ccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccc
Q 045598          242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVP-IQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE  320 (536)
Q Consensus       242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  320 (536)
                      +.+++++|.++. +|..+  .+.++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..           
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            467777777764 34333  2356777777777775533 34667777777777777776655555543           


Q ss_pred             eeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                                       +++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus        80 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           80 -----------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             -----------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             -----------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence                             456666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCchhhhCCCCCCEEEccCCcCcccCCCCccccc-cCCccc-cccCcCCCCCCCCCCCCCCCCCcccCCCCcCcc
Q 045598          401 GKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA-TFNESS-YEGNTFLCGLPLPICRSPATMSEASIGNERDDN  474 (536)
Q Consensus       401 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~l~-l~~n~~~c~~~l~~C~~~~~~~~~~~~~~~~~~  474 (536)
                      +..|..|..+++|+.|++++|++.+..+-.  .+. .++... ..++        +.|..|...++..+..+....
T Consensus       143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~--~l~~~~~~~~~~~~~--------~~C~~P~~l~g~~l~~l~~~~  208 (220)
T 2v70_A          143 TVAPGAFDTLHSLSTLNLLANPFNCNCYLA--WLGEWLRKKRIVTGN--------PRCQKPYFLKEIPIQDVAIQD  208 (220)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCCEECSGGGH--HHHHHHHHSCCBCCC--------CEEEESGGGTTEEGGGSCGGG
T ss_pred             EECHHHhcCCCCCCEEEecCcCCcCCCchH--HHHHHHHhcCccccC--------CccCCChHHCCCChhhCCHHH
Confidence            666666666666666666666666533210  000 000000 1111        257788877777666555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.7e-23  Score=204.25  Aligned_cols=247  Identities=19%  Similarity=0.206  Sum_probs=151.5

Q ss_pred             cCChhHhhcCCCCcEEEccCCCCcccC----CccCCCCCCCCEEEccCCc---CccccchhH------hhCCCCCCEEEc
Q 045598           36 HIPVEIADVLPSLYAFNNSMNALDGSI----PSSFGNMKFLQFLDLSNNH---LTGEIPEHL------AVGCVNLRFLAL  102 (536)
Q Consensus        36 ~~p~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~L  102 (536)
                      .++..+.. +++|+.|++++|.+++..    +..+.++++|++|++++|.   +++.+|..+      +..+++|++|+|
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            44444444 567777777777766542    2346677777777777753   333444443      245677777777


Q ss_pred             ccCccCc----cCCccccCCCCCCEEEccCCcCcccCCcC----CCCC---------CccCeeecccCcCCC-CCC---c
Q 045598          103 SNNNLQG----HMFSRNFNLTNLKWLQLEGSRFVGEIPQS----LSKC---------SSLEGLYLNNNSLSG-KIP---R  161 (536)
Q Consensus       103 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~  161 (536)
                      ++|.++.    ..+..+..+++|++|++++|.+....+..    +..+         ++|++|++++|.+.. ..+   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            7777665    23344556667777777777664322222    2222         566666666666642 222   2


Q ss_pred             ccCCCCCCCeEEccCCcccc-----CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccC
Q 045598          162 WLGNLTRLQCIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF  236 (536)
Q Consensus       162 ~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  236 (536)
                      .+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++...                   ...++. .+.
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------------------~~~l~~-~l~  241 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------------------SSALAI-ALK  241 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------------------HHHHHH-HGG
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------------------HHHHHH-HHc
Confidence            34455666666666666552     12224555666666666666553110                   012333 267


Q ss_pred             CCCCccEEEccCCcCCCc----cchhhhC--CCCccEEEcccccccc----cccccc-cCCCCCCEEecCCCcCCCCC
Q 045598          237 NCSSLVTLDLSYNRLNGS----ISDWVDG--LSQLSHLILGHNNLEG----EVPIQL-CELNQLQLLDLSNNNLHGPI  303 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~~~~~~  303 (536)
                      .+++|++|++++|.+++.    ++..+..  +++|+.|++++|.+++    .+|..+ ..+++|+.|++++|++++..
T Consensus       242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            788899999999888754    4555543  8889999999999886    366666 56899999999999888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=7.2e-21  Score=181.94  Aligned_cols=150  Identities=23%  Similarity=0.375  Sum_probs=80.2

Q ss_pred             CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598          236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK  315 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  315 (536)
                      ..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++..+  +..      
T Consensus        82 ~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------  149 (308)
T 1h6u_A           82 KNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------  149 (308)
T ss_dssp             TTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG------
T ss_pred             ccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC------
Confidence            3444444444444444432  1344445555555555554432 2 14455555555555555543322  111      


Q ss_pred             ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCC
Q 045598          316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS  395 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  395 (536)
                                            +++|++|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|++|+++
T Consensus       150 ----------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~  203 (308)
T 1h6u_A          150 ----------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK  203 (308)
T ss_dssp             ----------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECT
T ss_pred             ----------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEcc
Confidence                                  4455555665555554322  5666666777777766664432  5666677777777


Q ss_pred             CCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598          396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       396 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      +|++++..+  +..+++|+.|++++|++++
T Consensus       204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          204 NNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            776664432  5666777777777776664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=186.66  Aligned_cols=203  Identities=17%  Similarity=0.135  Sum_probs=131.1

Q ss_pred             CCCcCEEEccCCcCcccCChhHh-hcCCCCcEEEccCCCCcccCC----ccCCCCCCCCEEEccCCcCccccchhHhhCC
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIA-DVLPSLYAFNNSMNALDGSIP----SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGC   94 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~-~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l   94 (536)
                      +++|++|++++|.+.+..|..++ ..+++|+.|++++|.+++..+    ..+..+++|++|++++|.++ .++...++.+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccC
Confidence            35577777777777766666653 346677777777777765433    33456777777777777776 4444444677


Q ss_pred             CCCCEEEcccCccCcc---C-CccccCCCCCCEEEccCCcCcccCC--c-CCCCCCccCeeecccCcCCCCCCcccCCC-
Q 045598           95 VNLRFLALSNNNLQGH---M-FSRNFNLTNLKWLQLEGSRFVGEIP--Q-SLSKCSSLEGLYLNNNSLSGKIPRWLGNL-  166 (536)
Q Consensus        95 ~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~i~~~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-  166 (536)
                      ++|++|++++|.+.+.   . ...+..+++|++|++++|+++...+  . .+..+++|++|++++|.+.+..|..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            7777777777776531   1 2223566777777777777752211  1 24566777777777777776656555555 


Q ss_pred             --CCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC
Q 045598          167 --TRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH  227 (536)
Q Consensus       167 --~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  227 (536)
                        ++|++|++++|+++. .|..+.  ++|+.|++++|++++. +....+++|+.|++++|.+.
T Consensus       249 ~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence              577777777777773 344442  6777777777777754 23345677777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=3.3e-22  Score=194.36  Aligned_cols=246  Identities=20%  Similarity=0.224  Sum_probs=173.9

Q ss_pred             CCeEEccCCccccCCcccccCC--CCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCc-ccccccCCCCCccEEE
Q 045598          169 LQCIIMPNNHLEGPIPVEFCQL--DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ-LKRGTFFNCSSLVTLD  245 (536)
Q Consensus       169 L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~L~~L~  245 (536)
                      ++.++++++.+.   +..+..+  ++++.+++++|.+.+..+..+...+|+.|++++|.+.+. ++. .+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEe
Confidence            444455444433   2233333  455555555555555555555555666666666655433 333 377889999999


Q ss_pred             ccCCcCCCccchhhhCCCCccEEEcccc-ccccc-ccccccCCCCCCEEecCCC-cCCCC-CCccccccchhhhccccce
Q 045598          246 LSYNRLNGSISDWVDGLSQLSHLILGHN-NLEGE-VPIQLCELNQLQLLDLSNN-NLHGP-IPSCFDNTTLHEKKQIREK  321 (536)
Q Consensus       246 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~~~~~~~~~  321 (536)
                      +++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+.             
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-------------  191 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-------------  191 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-------------
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-------------
Confidence            9999988778888888999999999999 67653 5666888999999999999 77642 122221             


Q ss_pred             eEEeeccceeeecccccc-ccceEEccCC--cCc-CCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeCCC
Q 045598          322 FEFTTKNIAYIYQGKVLS-LLSGLDLSCN--KLI-GPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDLSN  396 (536)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~  396 (536)
                                     .++ +|++|++++|  .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++
T Consensus       192 ---------------~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          192 ---------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             ---------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             ---------------hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence                           156 8999999999  455 3456677889999999999999 7767778899999999999999


Q ss_pred             Cc-ccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc-ccCCccccccCcCCCC
Q 045598          397 NK-LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCG  450 (536)
Q Consensus       397 n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~l~l~~n~~~c~  450 (536)
                      |. +.......+.++++|+.|++++| ++   ...+..+ ..+..+.+.+|.+...
T Consensus       257 ~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          257 CYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             CCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence            95 33333336788999999999999 33   2234444 3477888877776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=2.8e-20  Score=177.78  Aligned_cols=190  Identities=23%  Similarity=0.307  Sum_probs=95.4

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598           46 PSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ  125 (536)
Q Consensus        46 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  125 (536)
                      ++|+.|+++++.++. ++ .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            355566665555543 22 3555556666666665555 3443  34555555555555555532  2344555555555


Q ss_pred             ccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcc
Q 045598          126 LEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       126 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      +++|.+.+. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            555555432 1 24455555555555555543221  4444555555555554443222  4444444444444444432


Q ss_pred             cCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccc
Q 045598          206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE  276 (536)
Q Consensus       206 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  276 (536)
                      .                        +.  +..+++|++|++++|.+.+..  .+..+++|+.|++++|+++
T Consensus       188 ~------------------------~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          188 I------------------------SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             C------------------------GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             C------------------------hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            1                        11  445556666666666655433  2455566666666666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.84  E-value=5.8e-21  Score=187.01  Aligned_cols=181  Identities=23%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             cEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc-CCCCCCEEecCCCcCCCCCCccccccchhhhccccc
Q 045598          242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC-ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE  320 (536)
Q Consensus       242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~  320 (536)
                      +.++++++.++. +|..+  .+.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..|..           
T Consensus        21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   86 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP-----------   86 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC-----------
Confidence            466777776663 34332  23567777777777766666665 6777777777777777666555544           


Q ss_pred             eeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          321 KFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                                       +++|++|++++|.++...+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus        87 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           87 -----------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             -----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence                             567777777777777666667778888888888888888777778888888888888888888


Q ss_pred             ccCchhh---hCCCCCCEEEccCCcCcccCCCCcccccc--CCccccccCcCCCCCCC
Q 045598          401 GKIPHQL---VELKTLEVFSVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLPL  453 (536)
Q Consensus       401 ~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~l~l~~n~~~c~~~l  453 (536)
                      ++.+..|   ..+++|+.|++++|++++..+..+..++.  ++.+++.+|||.|+|.+
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            6555555   46788888888888888655555555554  36788888888888853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=6e-20  Score=179.08  Aligned_cols=200  Identities=19%  Similarity=0.088  Sum_probs=161.5

Q ss_pred             EEeccccccccCCCCcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccC-CccCCCCCCCCE-EEccC
Q 045598            2 LSLVNDSLGGPFRLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSI-PSSFGNMKFLQF-LDLSN   79 (536)
Q Consensus         2 L~L~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~-L~L~~   79 (536)
                      ++-++++++ .+|..+  .+++++|+|++|+++ .+|...+..+++|++|+|++|.+.+.+ +.+|.++++++. +.+++
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            455667776 677665  478999999999999 888877777999999999999986544 457899998875 56677


Q ss_pred             CcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccC-CcCcccCCcCCCCCC-ccCeeecccCcCCC
Q 045598           80 NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEG-SRFVGEIPQSLSKCS-SLEGLYLNNNSLSG  157 (536)
Q Consensus        80 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~  157 (536)
                      |+++ .++...+..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+..
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            8998 78777778999999999999999988777777778888999976 567766666777765 68899999999985


Q ss_pred             CCCcccCCCCCCCeEEccC-CccccCCcccccCCCCCCEEEccCCcCcccC
Q 045598          158 KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGSL  207 (536)
Q Consensus       158 ~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  207 (536)
                      . +......++|+++++.+ |.++.+.+..|.++++|+.|++++|+++...
T Consensus       169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            4 44444567899999975 6777666778899999999999999987443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.7e-19  Score=164.45  Aligned_cols=156  Identities=24%  Similarity=0.232  Sum_probs=104.8

Q ss_pred             CccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598          240 SLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR  319 (536)
Q Consensus       240 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  319 (536)
                      ..+.++.+++.++. +|..+  .++|+.|++++|.+++..+..|..+++|++|++++|.++...+..|..          
T Consensus        20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            34667887777763 34332  267788888888887766777777777888888777776555554443          


Q ss_pred             ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598          320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL  399 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  399 (536)
                                        +++|++|++++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++
T Consensus        87 ------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  147 (229)
T 3e6j_A           87 ------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL  147 (229)
T ss_dssp             ------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred             ------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence                              456777777777776665666666777777777777776 4556666667777777777777


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcccC
Q 045598          400 NGKIPHQLVELKTLEVFSVAYNNLSGEI  427 (536)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~  427 (536)
                      ++..+..+..+++|+.|++++|++.+..
T Consensus       148 ~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          148 KSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6555556666667777777776666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.4e-19  Score=162.65  Aligned_cols=162  Identities=26%  Similarity=0.291  Sum_probs=132.4

Q ss_pred             CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598          238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ  317 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  317 (536)
                      .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..        
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------   98 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------   98 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence            357888888888888766677788888888888888888666666788888888888888888766655544        


Q ss_pred             ccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCC
Q 045598          318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNN  397 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  397 (536)
                                          +++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus        99 --------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           99 --------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             --------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence                                668888899888888777777888999999999999999777777888999999999999


Q ss_pred             cccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598          398 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  434 (536)
Q Consensus       398 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  434 (536)
                      .+.+       .+++|+.|+++.|++++.+|..++.+
T Consensus       159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             Ceec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            8763       45678899999999999998876544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.1e-19  Score=161.52  Aligned_cols=173  Identities=24%  Similarity=0.245  Sum_probs=105.6

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      +.++++++.++ .+|..+.   ++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            45666666665 5555443   36677777777766555555666777777777777666 5555555566667777777


Q ss_pred             cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045598          104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPI  183 (536)
Q Consensus       104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  183 (536)
                      +|.++...+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.   
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            66666555555666666666666666666555555666666666666666666544444556666666666666543   


Q ss_pred             cccccCCCCCCEEEccCCcCcccCC
Q 045598          184 PVEFCQLDLLQILDISDNNISGSLP  208 (536)
Q Consensus       184 ~~~~~~l~~L~~L~l~~n~~~~~~~  208 (536)
                          ..+++|+.|+++.|++++..|
T Consensus       162 ----~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          162 ----CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ----CCTTTTHHHHHHHHHCTTTBB
T ss_pred             ----cCCCCHHHHHHHHHhCCceee
Confidence                223455555555555554433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=2.6e-19  Score=183.54  Aligned_cols=148  Identities=26%  Similarity=0.319  Sum_probs=94.0

Q ss_pred             CCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598          238 CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ  317 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  317 (536)
                      +++|++|++++|.+++ +|. +..  +|+.|++++|.+++ +|.   .+++|+.|++++|.+++. |.   .        
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~--------  158 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML-PE---L--------  158 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---C--------
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC---c--------
Confidence            4666777777776665 444 333  67777777777764 444   466777777777776652 22   1        


Q ss_pred             ccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC-------C
Q 045598          318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV-------E  390 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~  390 (536)
                                          +++|++|++++|.+++ +|. |.  ++|+.|+|++|.++ .+|. +..  +|       +
T Consensus       159 --------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~  210 (571)
T 3cvr_A          159 --------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEI  210 (571)
T ss_dssp             --------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCE
T ss_pred             --------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccce
Confidence                                4567777777777765 444 54  67777777777777 3444 443  55       7


Q ss_pred             EEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcccc
Q 045598          391 SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF  434 (536)
Q Consensus       391 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  434 (536)
                      .|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus       211 ~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             EEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             EEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            7777777777 456666667777777777777777666655444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=8.4e-19  Score=158.72  Aligned_cols=153  Identities=23%  Similarity=0.276  Sum_probs=98.6

Q ss_pred             cEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccce
Q 045598          242 VTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREK  321 (536)
Q Consensus       242 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  321 (536)
                      +.++++++.++. +|..+.  ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..            
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            345555555553 232221  45666666666666555555666666666666666666555555544            


Q ss_pred             eEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccc
Q 045598          322 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNG  401 (536)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  401 (536)
                                      +++|++|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++
T Consensus        79 ----------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           79 ----------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             ----------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ----------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence                            4566666666666665555556677777777777777776666777777777777777777776


Q ss_pred             cCchhhhCCCCCCEEEccCCcCcc
Q 045598          402 KIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       402 ~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ..+..|..+++|+.|++++|++.+
T Consensus       143 ~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          143 IAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECHHHHhCCCCCCEEEeCCCCcCC
Confidence            666667777777777777777765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.80  E-value=2.9e-19  Score=158.02  Aligned_cols=137  Identities=20%  Similarity=0.318  Sum_probs=123.7

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      ++.|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|..+++|+.|+
T Consensus        30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            457999999999998 5678999999999999999999988888999999999999999999988889999999999999


Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL  475 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~  475 (536)
                      +++|+++...+..+..+++++.+++.+|||.|+|.+.                .|..|...+++.+.....+.+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~  182 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF  182 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence            9999999887778888999999999999999999753                588898888887777665544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=4.6e-19  Score=156.88  Aligned_cols=137  Identities=22%  Similarity=0.338  Sum_probs=124.3

Q ss_pred             cccceEEccCCcCcCCCcc-cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          339 SLLSGLDLSCNKLIGPIPL-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      ..+++|++++|.+.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|+.|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            4799999999999877664 589999999999999999998899999999999999999999998888899999999999


Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCccc
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDNL  475 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~  475 (536)
                      +++|++++..|..+..+++++.+++.+|+|.|+|++.                .|..|...++..+..+..+.+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~  182 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhc
Confidence            9999999999999999999999999999999999853                699999988887776665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=6.4e-19  Score=172.48  Aligned_cols=177  Identities=23%  Similarity=0.226  Sum_probs=146.8

Q ss_pred             cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCC-CCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFG-NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      -+.+++++++++ .+|..++.   .++.|++++|.+++..+..+. ++++|++|+|++|+++ .++...+..+++|++|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~~---~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCCT---TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEEEeCCCCcC-ccCccCCC---CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence            368999999998 78877654   789999999999988777887 8999999999999998 77766668899999999


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCccc---CCCCCCCeEEccCCc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL---GNLTRLQCIIMPNNH  178 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~  178 (536)
                      |++|.++...+..+.++++|++|+|++|.+....+..|.++++|+.|++++|.+....+..|   ..+++|++|++++|+
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            99999998888888899999999999999988888889999999999999999885444444   568889999999998


Q ss_pred             cccCCcccccCCCC--CCEEEccCCcCc
Q 045598          179 LEGPIPVEFCQLDL--LQILDISDNNIS  204 (536)
Q Consensus       179 ~~~~~~~~~~~l~~--L~~L~l~~n~~~  204 (536)
                      +....+..+..++.  ++.|++++|.+.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            88776677777766  377888877765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=156.49  Aligned_cols=153  Identities=23%  Similarity=0.241  Sum_probs=111.3

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCC-ccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIP-SSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL  102 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  102 (536)
                      +.++++++.++ .+|..++.   .++.|++++|.+++..+ ..|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~~---~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCCT---TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCcc-cCccCCCC---CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence            57888888877 67765543   56788888888776544 45777788888888888777 555555567777777777


Q ss_pred             ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      ++|.+++..+..+.++++|++|++++|++.+..|..|.++++|+.|++++|.+.+..|..|..+++|++|++++|.+..
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            7777777666667777777777777777776667777777777777777777776666677777777777777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.6e-18  Score=164.04  Aligned_cols=171  Identities=23%  Similarity=0.357  Sum_probs=97.5

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL   97 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   97 (536)
                      ..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|
T Consensus        43 ~~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L  114 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL  114 (291)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred             hhcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence            34556666666666665 3332 2 235666666666666654332  666666666666666665 3433  3456666


Q ss_pred             CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598           98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN  177 (536)
Q Consensus        98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  177 (536)
                      ++|++++|.++..  ..+..+++|++|++++|++.+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence            6666666666543  3455566666666666665543  345556666666666666654332  555666666666666


Q ss_pred             ccccCCcccccCCCCCCEEEccCCcCc
Q 045598          178 HLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      .+++.  ..+..+++|+.|++++|++.
T Consensus       189 ~i~~l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          189 HISDL--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred             cCCCC--hhhccCCCCCEEECcCCccc
Confidence            66533  23555666666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.7e-18  Score=154.89  Aligned_cols=156  Identities=23%  Similarity=0.270  Sum_probs=118.7

Q ss_pred             ccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceE
Q 045598          265 LSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGL  344 (536)
Q Consensus       265 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  344 (536)
                      .+.++.+++.++ .+|..+.  ++|+.|++++|.+++..+..+..                            +++|++|
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~----------------------------l~~L~~L   69 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS----------------------------LINLKEL   69 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT----------------------------CTTCCEE
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC----------------------------ccCCcEE
Confidence            456777777776 4554433  67888888888888776766654                            5678888


Q ss_pred             EccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          345 DLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       345 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      ++++|.+....+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus        70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            88888887666667778888888888888888766667788888888888888887 66777778888888888888888


Q ss_pred             ccCCCCccccccCCccccccCcCCCCCC
Q 045598          425 GEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       425 ~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      +..+..+..+++++.+++.+|||.|+|+
T Consensus       149 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          149 SIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            7666667777788888888888888875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=8.3e-18  Score=159.18  Aligned_cols=151  Identities=25%  Similarity=0.371  Sum_probs=115.5

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE  314 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  314 (536)
                      +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++ ++ .+..+++|++|++++|.+++.  ..+..     
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~-----  132 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH-----  132 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG-----
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcC-----
Confidence            5667788888888888875444  7778888888888888774 33 377888888888888887753  12221     


Q ss_pred             hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598          315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL  394 (536)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  394 (536)
                                             +++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++
T Consensus       133 -----------------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          133 -----------------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             -----------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             -----------------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence                                   56788888888888764  567888889999999998886544  888889999999


Q ss_pred             CCCcccccCchhhhCCCCCCEEEccCCcCcc
Q 045598          395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLSG  425 (536)
Q Consensus       395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~  425 (536)
                      ++|++++. + .+..+++|+.|++++|+++.
T Consensus       186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            99988853 3 37888899999999998875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.2e-18  Score=177.51  Aligned_cols=128  Identities=29%  Similarity=0.398  Sum_probs=66.6

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhh
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE  314 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  314 (536)
                      +..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..     
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~-----  151 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSR-----  151 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGS-----
T ss_pred             hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcc-----
Confidence            44556666666666666532 2 45556666666666666653 2 2355556666666666655532  11111     


Q ss_pred             hccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeC
Q 045598          315 KKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDL  394 (536)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  394 (536)
                                             +++|+.|+|++|.+.+..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|
T Consensus       152 -----------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          152 -----------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL  204 (605)
T ss_dssp             -----------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEC
T ss_pred             -----------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEc
Confidence                                   3455555555555554333  45555555555555555532  23455555555555


Q ss_pred             CCCccc
Q 045598          395 SNNKLN  400 (536)
Q Consensus       395 ~~n~l~  400 (536)
                      ++|++.
T Consensus       205 ~~N~l~  210 (605)
T 1m9s_A          205 FSQECL  210 (605)
T ss_dssp             CSEEEE
T ss_pred             cCCcCc
Confidence            555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=1e-17  Score=171.74  Aligned_cols=183  Identities=23%  Similarity=0.344  Sum_probs=142.6

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      +++.|++++|+++ .+|..++   ++|+.|++++|.++ .+|   ..+++|++|++++|.++ .+|. + ..  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEE
T ss_pred             CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEE
Confidence            8899999999888 4787664   58899999999888 556   45788999999999988 5777 4 33  899999


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      +++|.++++..    .+++|++|++++|.+.+ +|.   .+++|+.|++++|.+.+ +|. +.  ++|++|++++|.++.
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence            99999887433    57889999999998885 444   56789999999999885 555 55  889999999998884


Q ss_pred             CCcccccCCCCC-------CEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCccccc
Q 045598          182 PIPVEFCQLDLL-------QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG  233 (536)
Q Consensus       182 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  233 (536)
                       .|. +..  +|       +.|++++|.++.++...+.+++|+.|++++|.+.+.++..
T Consensus       195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          195 -LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             -CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             -hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence             444 543  67       9999999999876655667888999999999887665543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=3.8e-18  Score=164.83  Aligned_cols=223  Identities=13%  Similarity=0.083  Sum_probs=129.5

Q ss_pred             CCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEc
Q 045598          142 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHL  221 (536)
Q Consensus       142 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  221 (536)
                      +++|+.+++.+ .+......+|.++++|+.+++..|.+..+.+.+|.++.++..+....+.....               
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~---------------  163 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF---------------  163 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT---------------
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc---------------
Confidence            66666666655 55544455566666666666666665555555565555554444433211000               


Q ss_pred             cCCCCCCcccccccCCCCCcc-EEEccCCcCCCccchh-hh---CCCCccEEEcccccccccccccccCCCCCCEEecCC
Q 045598          222 SKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSISDW-VD---GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN  296 (536)
Q Consensus       222 ~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~-~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  296 (536)
                           ...+...+|..+.+|+ .+.+....   .++.. +.   ...++..+.+.++-...........+++|+.+++++
T Consensus       164 -----~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~  235 (329)
T 3sb4_A          164 -----KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK  235 (329)
T ss_dssp             -----STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred             -----cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence                 0112223344555555 33333211   11111 11   234555555554422211111112366777777777


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCC-EEeCCCccC
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ-TLNLSHNNL  375 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l  375 (536)
                      |.++.+.+.+|..                            +++|+++++.+| ++...+.+|.++++|+ .+++.+ .+
T Consensus       236 n~i~~I~~~aF~~----------------------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          236 TNATTIPDFTFAQ----------------------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             BCCCEECTTTTTT----------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             CCcceecHhhhhC----------------------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence            7776666666655                            456777777776 5556667788888888 888887 67


Q ss_pred             CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEc
Q 045598          376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV  418 (536)
Q Consensus       376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  418 (536)
                      +.+.+.+|.++++|+++++++|+++.+.+.+|.++++|+.+..
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7677788888888888888888888777888888888888753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.2e-17  Score=148.50  Aligned_cols=153  Identities=16%  Similarity=0.227  Sum_probs=107.4

Q ss_pred             CCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598          236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK  315 (536)
Q Consensus       236 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  315 (536)
                      ..+++|++|++++|.+. .++ .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            45567777788777777 334 4667777888888877654  2235677777888888777777655555443      


Q ss_pred             ccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCCCCCCEEeC
Q 045598          316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKYVESLDL  394 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  394 (536)
                                            +++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++
T Consensus       111 ----------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A          111 ----------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNI  166 (197)
T ss_dssp             ----------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEEC
T ss_pred             ----------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEEC
Confidence                                  5677777888777776667777788888888888887 553 33 5777888888888


Q ss_pred             CCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          395 SNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       395 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      ++|++++. + .+..+++|+.|++++|++.
T Consensus       167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             CCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            88888753 3 5677888888888888765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=9e-18  Score=174.12  Aligned_cols=173  Identities=23%  Similarity=0.353  Sum_probs=106.2

Q ss_pred             cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598           17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN   96 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~   96 (536)
                      +..+++|+.|++++|.+. .+| .+ ..+++|+.|+|++|.+++..+  +..+++|+.|+|++|.++ .++ . +..+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~  110 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-S-LKDLKK  110 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-T-STTCTT
T ss_pred             hhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-h-hccCCC
Confidence            345566666666666665 444 23 236666777776666665433  666666777777666666 444 2 355666


Q ss_pred             CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccC
Q 045598           97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN  176 (536)
Q Consensus        97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  176 (536)
                      |++|+|++|.+...  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|++++|.+.+..|  +..+++|++|++++
T Consensus       111 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          111 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK  184 (605)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcC
Confidence            66666666666643  3456666666666666666643  456666666666666666664433  66666666666666


Q ss_pred             CccccCCcccccCCCCCCEEEccCCcCcc
Q 045598          177 NHLEGPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       177 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      |.+.+.  ..+..+++|+.|++++|.+.+
T Consensus       185 N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          185 NHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             CCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            666643  346666666666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=1.3e-16  Score=158.05  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=83.3

Q ss_pred             CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI  318 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  318 (536)
                      .+|+.+.+... ++......+.++..++.+.+..+... .....|..+..++.+....+.+.   ..+|..         
T Consensus       230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~---------  295 (394)
T 4fs7_A          230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG---------  295 (394)
T ss_dssp             CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT---------
T ss_pred             CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc---------
Confidence            45555555432 22223344555556666665544332 34445555666666555443221   112222         


Q ss_pred             cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                         ..+|+.+.+..+ ++.....+|.++++|+.++|.++ ++.+...+|.++++|+.+++..+ 
T Consensus       296 -------------------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-  353 (394)
T 4fs7_A          296 -------------------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-  353 (394)
T ss_dssp             -------------------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred             -------------------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence                               345555655443 33344566777777777777644 55455667777778888877766 


Q ss_pred             ccccCchhhhCCCCCCEEEccCC
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYN  421 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N  421 (536)
                      ++.+...+|.++++|+.+++..+
T Consensus       354 l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          354 LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccEehHHHhhCCCCCCEEEECCC
Confidence            65566777777778887777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=7.9e-18  Score=162.59  Aligned_cols=221  Identities=14%  Similarity=0.085  Sum_probs=158.1

Q ss_pred             CCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEE
Q 045598          166 LTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD  245 (536)
Q Consensus       166 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  245 (536)
                      +++|+++.+.. .++.+...+|.++++|+.+++++|.+..+                        +..+|..+.++..+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i------------------------~~~aF~~~~~l~~l~  154 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL------------------------LPEALADSVTAIFIP  154 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE------------------------CTTSSCTTTCEEEEC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc------------------------chhhhcCCCceEEec
Confidence            88888888888 77777778888888888888888877633                        344466666777666


Q ss_pred             ccCCc----CCCccchhhhCCCCcc-EEEcccccc-cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598          246 LSYNR----LNGSISDWVDGLSQLS-HLILGHNNL-EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR  319 (536)
Q Consensus       246 L~~n~----l~~~~~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  319 (536)
                      ...+.    ........|.++..|+ .+.+..... .......-....+++.+.+.++-..    ..+..          
T Consensus       155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----~~~~~----------  220 (329)
T 3sb4_A          155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----ADFKL----------  220 (329)
T ss_dssp             TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----HHHHH----------
T ss_pred             CcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----HHHHH----------
Confidence            65532    1222334455667777 555543221 1111111113456677777654211    00000          


Q ss_pred             ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCC-EEeCCCCc
Q 045598          320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVE-SLDLSNNK  398 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~  398 (536)
                                  +  ...+++|+++++++|.++...+.+|.++++|++|+|.+| +..+.+.+|.++++|+ .+++.+ .
T Consensus       221 ------------l--~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~  284 (329)
T 3sb4_A          221 ------------I--RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S  284 (329)
T ss_dssp             ------------H--HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred             ------------H--HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence                        0  011578999999999999888889999999999999998 8878888999999999 999999 7


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccc
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS  441 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~  441 (536)
                      ++.+.+.+|.++++|+.+++++|+++...+..|..+++++.+.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            8878889999999999999999999988888888888887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=3.1e-17  Score=145.04  Aligned_cols=90  Identities=26%  Similarity=0.381  Sum_probs=52.1

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      +++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            34455555555555555555555556666666666666655555555666666666666666655555555666666666


Q ss_pred             ccCCcCcccC
Q 045598          418 VAYNNLSGEI  427 (536)
Q Consensus       418 l~~N~l~~~~  427 (536)
                      +++|++++..
T Consensus       133 L~~N~l~c~c  142 (192)
T 1w8a_A          133 LASNPFNCNC  142 (192)
T ss_dssp             CTTCCBCCSG
T ss_pred             eCCCCccCcC
Confidence            6666665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=3.7e-17  Score=145.37  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598           45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL  124 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  124 (536)
                      +++|+.|++++|.++ .++ .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            345666666666665 333 4566666666666666554 332 2 2456666666666666665555556666666666


Q ss_pred             EccCCcCcccCCcCCCCCCccCeeecccCc-CCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcC
Q 045598          125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI  203 (536)
Q Consensus       125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  203 (536)
                      ++++|.+.+..+..+..+++|++|++++|. +. ..+ .+..+++|++|++++|.+.+..  .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            666666655445555666666666666665 43 233 4555666666666666665322  455556666666666655


Q ss_pred             c
Q 045598          204 S  204 (536)
Q Consensus       204 ~  204 (536)
                      .
T Consensus       194 ~  194 (197)
T 4ezg_A          194 G  194 (197)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.9e-17  Score=152.06  Aligned_cols=167  Identities=22%  Similarity=0.249  Sum_probs=126.9

Q ss_pred             ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecC
Q 045598          216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS  295 (536)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  295 (536)
                      +..++++++.+.+ ++  .+..+++|++|++++|.++.. + .+..+++|+.|++++|.+++..+  +..+++|+.|+++
T Consensus        21 l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3344444444432 22  266778888999998888743 4 57788889999999998885444  8888899999999


Q ss_pred             CCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccC
Q 045598          296 NNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNL  375 (536)
Q Consensus       296 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  375 (536)
                      +|++++..+..                               .++|++|++++|.+++.  ..+..+++|+.|++++|++
T Consensus        94 ~N~l~~l~~~~-------------------------------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           94 RNRLKNLNGIP-------------------------------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             SSCCSCCTTCC-------------------------------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCC
T ss_pred             CCccCCcCccc-------------------------------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcC
Confidence            99887543211                               14788899999988863  3588889999999999999


Q ss_pred             CCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCccc
Q 045598          376 TGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       376 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      ++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            865  3688889999999999999866  6678889999999999988865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.71  E-value=7e-16  Score=152.04  Aligned_cols=266  Identities=17%  Similarity=0.169  Sum_probs=178.9

Q ss_pred             CCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEE
Q 045598          118 LTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILD  197 (536)
Q Consensus       118 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  197 (536)
                      +..++.+.+.++ +..+...+|.++ +|+.+.+..+ +......+|.+ .+|+.+.+.. .+..+...+|.++.+|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            355666666543 344555566664 5777777554 54455556666 3577777765 55556667777788888888


Q ss_pred             ccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccc
Q 045598          198 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG  277 (536)
Q Consensus       198 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  277 (536)
                      +++|.++.+....|...+|+.+.+..+ + ..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++.
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN  261 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence            887777777777777777788877744 3 3677777889999999998875 55455667777 688999884 55665


Q ss_pred             cccccccCCCCCCEEecCCCcCC-----CCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc
Q 045598          278 EVPIQLCELNQLQLLDLSNNNLH-----GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  352 (536)
Q Consensus       278 ~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  352 (536)
                      .....|.++++|+.+++.++.+.     ...+.+|..                            +++|+.+++.+ .++
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~----------------------------c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG----------------------------CPKLARFEIPE-SIR  312 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT----------------------------CTTCCEECCCT-TCC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC----------------------------CccCCeEEeCC-ceE
Confidence            66778888999999988877654     233333433                            45677777763 355


Q ss_pred             CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCC-CCCEEEccCCcCc
Q 045598          353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS  424 (536)
Q Consensus       353 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~  424 (536)
                      .....+|.++++|+.+.|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+.
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            555667777777777777544 555556677777 777777777777666666666664 5667766666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.9e-17  Score=152.94  Aligned_cols=171  Identities=22%  Similarity=0.271  Sum_probs=144.8

Q ss_pred             CCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc
Q 045598          237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK  316 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  316 (536)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+++..+  +..       
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~-------   83 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKD-------   83 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTT-------
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hcc-------
Confidence            4556788899999988543  57789999999999999984 55 68899999999999999987654  433       


Q ss_pred             cccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCC
Q 045598          317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN  396 (536)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  396 (536)
                                           +++|++|++++|.+++..+  +.. ++|+.|++++|.+++.  +.+..+++|++|++++
T Consensus        84 ---------------------l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           84 ---------------------LTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN  137 (263)
T ss_dssp             ---------------------CSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred             ---------------------CCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence                                 7899999999999986433  333 9999999999999964  4689999999999999


Q ss_pred             CcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCC
Q 045598          397 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG  450 (536)
Q Consensus       397 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~  450 (536)
                      |++++. + .+..+++|+.|++++|++++.  ..+..+++++.+++.+|++.+.
T Consensus       138 N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          138 NKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            999965 3 688999999999999999987  5577899999999999998775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.69  E-value=1.8e-15  Score=149.09  Aligned_cols=264  Identities=13%  Similarity=0.118  Sum_probs=177.1

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      +..++.+.+.. .++ .++...+..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus       112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred             cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence            45666666653 344 4555555544 6777777654 555556667664 577777765 455 666666677777777


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                      ++++.|.++.+...+|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ +......+|.+ .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            77777777766666665 467777777643 55555667777777777777653 44344555666 677777773 345


Q ss_pred             ccCCcccccCCCCCCEEEccCCcCc-----ccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCC
Q 045598          180 EGPIPVEFCQLDLLQILDISDNNIS-----GSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG  253 (536)
Q Consensus       180 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  253 (536)
                      ..+...+|.++++|+.+.+.++.+.     .+....| .+.+|+.+.+.++ + ..+...+|.+|++|+.+.+..+ ++.
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECcc-ccE
Confidence            5566677777777777777766554     3444555 5567777777743 3 3667777889999999999654 665


Q ss_pred             ccchhhhCCCCccEEEcccccccccccccccCCC-CCCEEecCCCcC
Q 045598          254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELN-QLQLLDLSNNNL  299 (536)
Q Consensus       254 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~  299 (536)
                      ....+|.++ +|+.+++.+|.........|.+++ +++.|.+..+.+
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            667788888 899999999888766667777774 788888876653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.8e-15  Score=149.86  Aligned_cols=333  Identities=14%  Similarity=0.158  Sum_probs=199.5

Q ss_pred             cCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccc
Q 045598           36 HIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN  115 (536)
Q Consensus        36 ~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (536)
                      +++...|..+.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ ++.+...+|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            45555555566777777753 355555566777777777777544 44 566666666777766655433 444455555


Q ss_pred             cCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCE
Q 045598          116 FNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI  195 (536)
Q Consensus       116 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  195 (536)
                      .++..++.......  ......+|.++.+|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+.
T Consensus       137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            55543333222222  22334567777777777775543 2244456777777777777655 34355566777777777


Q ss_pred             EEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccc
Q 045598          196 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNL  275 (536)
Q Consensus       196 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  275 (536)
                      +.+..+... .....+....|+.+.+....  ..+...+|..+.+++.+.+..+... .....|..+..++.+......+
T Consensus       213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             CCCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred             eecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence            766554332 33444455667777765443  2445556777777777777665433 4455666777777777665433


Q ss_pred             cccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC
Q 045598          276 EGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI  355 (536)
Q Consensus       276 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  355 (536)
                         ....|..+.+|+.+.+.++ ++.....+|..                            +.+|+.+++..+ ++...
T Consensus       289 ---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~----------------------------c~~L~~i~lp~~-v~~I~  335 (394)
T 4fs7_A          289 ---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFES----------------------------CTSLVSIDLPYL-VEEIG  335 (394)
T ss_dssp             ---CTTTTTTCTTCCEEEECTT-CCEECTTTTTT----------------------------CTTCCEECCCTT-CCEEC
T ss_pred             ---ccccccccccccccccccc-cceechhhhcC----------------------------CCCCCEEEeCCc-ccEEh
Confidence               2335667777777777643 44444555544                            456777777543 55455


Q ss_pred             cccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          356 PLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       356 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      ..+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            667777778888877665 55555667777778887777654 22 234556666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2e-19  Score=185.41  Aligned_cols=204  Identities=22%  Similarity=0.190  Sum_probs=116.1

Q ss_pred             CCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccE
Q 045598          164 GNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT  243 (536)
Q Consensus       164 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  243 (536)
                      ...++|+.|++++|++. ..|..+..+++|+.|++++|......+.     .+.     .+...+..+ ..+..+++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-----ll~-----~~~~~~~~~-~~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL-----LMR-----ALDPLLYEK-ETLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH-----HHH-----HHCTGGGHH-HHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH-----HHH-----hcccccCCH-HHHHHHHhccc
Confidence            34556666666666665 4456666666666666644421000000     000     000111111 12445555555


Q ss_pred             EE-ccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccccee
Q 045598          244 LD-LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKF  322 (536)
Q Consensus       244 L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~  322 (536)
                      |+ ++.|.+           .+|+.+.+++|.++...+      ..|+.|++++|.+++. |. +..             
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~-------------  461 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQ-------------  461 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGG-------------
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccc-------------
Confidence            55 333322           223334444454442211      2467777777777653 32 333             


Q ss_pred             EEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccccc
Q 045598          323 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGK  402 (536)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  402 (536)
                                     +++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.
T Consensus       462 ---------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          462 ---------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             ---------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             ---------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence                           567777777777777 566677777777777777777775 44 677777777777777777766


Q ss_pred             C-chhhhCCCCCCEEEccCCcCcccCCC
Q 045598          403 I-PHQLVELKTLEVFSVAYNNLSGEIPE  429 (536)
Q Consensus       403 ~-~~~~~~l~~L~~L~l~~N~l~~~~~~  429 (536)
                      . |..+..+++|+.|++++|++++..|.
T Consensus       524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             STTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            5 77777777777777777777765553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=4.5e-16  Score=135.77  Aligned_cols=115  Identities=23%  Similarity=0.255  Sum_probs=105.8

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            46899999999999987778889999999999999999988778899999999999999999988888889999999999


Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      +++|++++..+..+..+++++.+++.+|++.|+|+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999998777777789999999999999999886

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=4.7e-16  Score=134.44  Aligned_cols=87  Identities=25%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCc-ccccCCCCCCEEeCCCCcccccCc---hhhhCCCCC
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSNNKLNGKIP---HQLVELKTL  413 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L  413 (536)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.+++... ..+..+++|++|++++|++++..+   ..+..+++|
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence            4456666666666665556566667777777777777775422 567777788888888887775544   467778888


Q ss_pred             CEEEccCCcCc
Q 045598          414 EVFSVAYNNLS  424 (536)
Q Consensus       414 ~~L~l~~N~l~  424 (536)
                      +.|++++|.+.
T Consensus       150 ~~L~l~~n~~~  160 (168)
T 2ell_A          150 TYLDGYDREDQ  160 (168)
T ss_dssp             CEETTEETTSC
T ss_pred             cEecCCCCChh
Confidence            88888888776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2.7e-18  Score=176.96  Aligned_cols=183  Identities=18%  Similarity=0.215  Sum_probs=140.3

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCC-------------CcccCCccCCCCCCCCEEE-ccCCcCc
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNA-------------LDGSIPSSFGNMKFLQFLD-LSNNHLT   83 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~n~l~   83 (536)
                      ..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.             ..+..|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            56788999999999997 88988887 7789999987664             4556677788888888888 5665443


Q ss_pred             cccchhHh-----h--CCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598           84 GEIPEHLA-----V--GCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS  156 (536)
Q Consensus        84 ~~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  156 (536)
                       .++...+     .  ....|++|++++|.+++. +. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             3322110     0  123588888888888864 33 788888888888888888 66778888888888888888888


Q ss_pred             CCCCcccCCCCCCCeEEccCCccccCC-cccccCCCCCCEEEccCCcCcccCC
Q 045598          157 GKIPRWLGNLTRLQCIIMPNNHLEGPI-PVEFCQLDLLQILDISDNNISGSLP  208 (536)
Q Consensus       157 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~  208 (536)
                      + +| .+..+++|++|++++|++++.. |..+..+++|+.|++++|.+++.++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5 55 7888888888888888888776 7888888888888888888876544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=7.1e-16  Score=133.27  Aligned_cols=138  Identities=25%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             CCCCccEEEccCCcCC-CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhh
Q 045598          237 NCSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEK  315 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  315 (536)
                      ..++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..      
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------   93 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------   93 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence            3468889999999887 56677778888999999999998854  67888899999999999988766655433      


Q ss_pred             ccccceeEEeeccceeeeccccccccceEEccCCcCcCCC-cccccCCCCCCEEeCCCccCCCCCc---ccccCCCCCCE
Q 045598          316 KQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI-PLQIGNLTRIQTLNLSHNNLTGSIP---STFSNLKYVES  391 (536)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~  391 (536)
                                            +++|++|++++|.+++.. +..+..+++|+.|++++|++++..+   ..+..+++|++
T Consensus        94 ----------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           94 ----------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             ----------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             ----------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence                                  678999999999988643 3778899999999999999996655   47899999999


Q ss_pred             EeCCCCcccccCch
Q 045598          392 LDLSNNKLNGKIPH  405 (536)
Q Consensus       392 L~L~~n~l~~~~~~  405 (536)
                      |++++|.+. ..|+
T Consensus       152 L~l~~n~~~-~~~~  164 (168)
T 2ell_A          152 LDGYDREDQ-EAPD  164 (168)
T ss_dssp             ETTEETTSC-BCCS
T ss_pred             ecCCCCChh-hccc
Confidence            999999887 4443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=7e-16  Score=130.44  Aligned_cols=128  Identities=23%  Similarity=0.271  Sum_probs=84.1

Q ss_pred             CCccEEEccccccc-ccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeecccccccc
Q 045598          263 SQLSHLILGHNNLE-GEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLL  341 (536)
Q Consensus       263 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  341 (536)
                      ++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..                            +++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~----------------------------l~~L   66 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK----------------------------LNKL   66 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC----------------------------CTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc----------------------------CCCC
Confidence            45666666666665 45555556666666666666666543  22222                            4566


Q ss_pred             ceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCC-CcccccCCCCCCEEeCCCCcccccCc---hhhhCCCCCCEEE
Q 045598          342 SGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKYVESLDLSNNKLNGKIP---HQLVELKTLEVFS  417 (536)
Q Consensus       342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  417 (536)
                      ++|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+
T Consensus        67 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence            6677777766665666666677788888888877753 23667777888888888888776555   4677778888877


Q ss_pred             ccC
Q 045598          418 VAY  420 (536)
Q Consensus       418 l~~  420 (536)
                      +++
T Consensus       147 l~d  149 (149)
T 2je0_A          147 GYD  149 (149)
T ss_dssp             TBC
T ss_pred             CCC
Confidence            653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=131.69  Aligned_cols=127  Identities=24%  Similarity=0.289  Sum_probs=78.0

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      +.+++++++++ .+|..++   ++|+.|++++|.++ .+|..|.++++|++|++++|.++ .++...+.++++|++|+|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence            46677777666 6665543   36666666666666 44566666666666666666666 4554444566666666666


Q ss_pred             cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCC
Q 045598          104 NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS  156 (536)
Q Consensus       104 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  156 (536)
                      +|.++...+..+.++++|++|++++|.+....+..|..+++|+.|++++|++.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            66666655555666666666666666666444445555566666666655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=7.5e-15  Score=127.99  Aligned_cols=130  Identities=22%  Similarity=0.247  Sum_probs=92.9

Q ss_pred             cCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEc
Q 045598           23 LGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL  102 (536)
Q Consensus        23 L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  102 (536)
                      .+.+++++++++ .+|..++   ++|+.|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence            467778777777 6675544   47788888888877666666777888888888888777 666665567777777777


Q ss_pred             ccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCC
Q 045598          103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSG  157 (536)
Q Consensus       103 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  157 (536)
                      ++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7777776666666677777777777777765555556667777777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=2.6e-16  Score=167.33  Aligned_cols=118  Identities=27%  Similarity=0.361  Sum_probs=66.6

Q ss_pred             ccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchh
Q 045598          234 TFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH  313 (536)
Q Consensus       234 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  313 (536)
                      .+..+++|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..    
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----  291 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS----  291 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG----
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC----
Confidence            3555666666666666665 33333445666666666666666 55555666666666666666665 33444433    


Q ss_pred             hhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccc
Q 045598          314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTF  383 (536)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  383 (536)
                                              +++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+
T Consensus       292 ------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          292 ------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence                                    455666666666655 445556666666666666666665555444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.3e-15  Score=128.72  Aligned_cols=129  Identities=26%  Similarity=0.289  Sum_probs=102.2

Q ss_pred             CCCccEEEccCCcCC-CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhc
Q 045598          238 CSSLVTLDLSYNRLN-GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK  316 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  316 (536)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------   86 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------   86 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence            367888888888887 56677777888888888888888754  66788888888888888888755554432       


Q ss_pred             cccceeEEeeccceeeeccccccccceEEccCCcCcCC-CcccccCCCCCCEEeCCCccCCCCCc---ccccCCCCCCEE
Q 045598          317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP-IPLQIGNLTRIQTLNLSHNNLTGSIP---STFSNLKYVESL  392 (536)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L  392 (536)
                                           +++|++|++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|++|
T Consensus        87 ---------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           87 ---------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             ---------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             ---------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence                                 56888889988888863 34778889999999999999987655   578889999999


Q ss_pred             eCCC
Q 045598          393 DLSN  396 (536)
Q Consensus       393 ~L~~  396 (536)
                      ++++
T Consensus       146 ~l~d  149 (149)
T 2je0_A          146 DGYD  149 (149)
T ss_dssp             TTBC
T ss_pred             cCCC
Confidence            9864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=3.1e-16  Score=166.75  Aligned_cols=180  Identities=23%  Similarity=0.200  Sum_probs=98.3

Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598          183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL  262 (536)
Q Consensus       183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  262 (536)
                      .+..+..++.|+.|++++|.+....+..+.+.+|+.|+|++|.+. .++.. |..+++|++|+|++|.++ .+|..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            344555566666666666666544444445556666666666664 55544 778889999999999888 668888888


Q ss_pred             CCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccc
Q 045598          263 SQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLS  342 (536)
Q Consensus       263 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  342 (536)
                      ++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+....                           ....
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~---------------------------~~~~  344 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS---------------------------VTGL  344 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH---------------------------HHHH
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc---------------------------hhhh
Confidence            89999999999887 6777788899999999999988877776654321                           1122


Q ss_pred             eEEccCCcCcCCCcccccCCCCCCEEeCCCc--------cCCCCCcccccCCCCCCEEeCCCCcc
Q 045598          343 GLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN--------NLTGSIPSTFSNLKYVESLDLSNNKL  399 (536)
Q Consensus       343 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l  399 (536)
                      .+++++|.+++.+|.      .|+.|+++.|        .+.+..+..+..+..++...+++|-+
T Consensus       345 ~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          345 IFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             HHHHHHCCCCCCCCC------C-----------------------------------------CC
T ss_pred             HHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            356677777666554      3445555555        22222333344444555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=6.8e-15  Score=127.06  Aligned_cols=110  Identities=25%  Similarity=0.253  Sum_probs=97.6

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  419 (536)
                      ..+++++++|.++. +|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999885 565553  789999999999998888899999999999999999998888888999999999999


Q ss_pred             CCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      +|++++..+..+..+++++.+++.+|||.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998888778889999999999999999986

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=2.6e-13  Score=134.32  Aligned_cols=299  Identities=11%  Similarity=0.160  Sum_probs=149.2

Q ss_pred             cCCccCCCCC-CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCc---cCccCCccccCCCCCCEEEccCCcCcccCC
Q 045598           61 SIPSSFGNMK-FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN---LQGHMFSRNFNLTNLKWLQLEGSRFVGEIP  136 (536)
Q Consensus        61 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  136 (536)
                      +...+|.+++ .|+.+.+..+ ++ .|....|.+|.+|+.+.+..+.   ++.+...+|.++.+|+.+.+..+ +.....
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence            3445666664 4777776543 44 5666666667777777666542   45555556666666666555443 233444


Q ss_pred             cCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCc
Q 045598          137 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSI  216 (536)
Q Consensus       137 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  216 (536)
                      .+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +..+...+|.. .+|+.+.+..+               
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~---------------  192 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK---------------  192 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT---------------
T ss_pred             hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc---------------
Confidence            45555666666655432 22233344555555555555433 22233333432 34555544332               


Q ss_pred             cEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchh-------------hhCCCCccEEEcccccccccccccc
Q 045598          217 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW-------------VDGLSQLSHLILGHNNLEGEVPIQL  283 (536)
Q Consensus       217 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~  283 (536)
                              ..  .+...+|..+.+++................             +.....+..+.+. +.++......|
T Consensus       193 --------~~--~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF  261 (394)
T 4gt6_A          193 --------VT--RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAF  261 (394)
T ss_dssp             --------CC--EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTT
T ss_pred             --------cc--ccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEccccee
Confidence                    21  222333445555554444333221100000             0111223333332 12222334456


Q ss_pred             cCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCC
Q 045598          284 CELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT  363 (536)
Q Consensus       284 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  363 (536)
                      ..+..|+.+.+.++. ......+|..                            .+.|+.+.+.. .++.....+|.++.
T Consensus       262 ~~c~~L~~i~lp~~~-~~I~~~aF~~----------------------------c~~L~~i~l~~-~i~~I~~~aF~~c~  311 (394)
T 4gt6_A          262 DSCAYLASVKMPDSV-VSIGTGAFMN----------------------------CPALQDIEFSS-RITELPESVFAGCI  311 (394)
T ss_dssp             TTCSSCCEEECCTTC-CEECTTTTTT----------------------------CTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred             eecccccEEeccccc-ceecCccccc----------------------------ccccccccCCC-cccccCceeecCCC
Confidence            666666666665432 2223333332                            34555565542 33334455666667


Q ss_pred             CCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcC
Q 045598          364 RIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL  423 (536)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l  423 (536)
                      +|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++..
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            7777776543 44445566777777777777543 5545566677777777777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.55  E-value=5.7e-13  Score=131.85  Aligned_cols=335  Identities=12%  Similarity=0.094  Sum_probs=196.7

Q ss_pred             cCChhHhhcCC-CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc---CccccchhHhhCCCCCCEEEcccCccCccC
Q 045598           36 HIPVEIADVLP-SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH---LTGEIPEHLAVGCVNLRFLALSNNNLQGHM  111 (536)
Q Consensus        36 ~~p~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  111 (536)
                      .++...|..++ .|+.+.+.. .++.+...+|.++++|+.+.+..+.   ++ .++...|.++.+|+.+.+..+ ++.+.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             EcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceeh
Confidence            45555555453 588888875 3666677888889999998887763   65 777777888888888777654 55567


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCC
Q 045598          112 FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD  191 (536)
Q Consensus       112 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  191 (536)
                      ..++..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +......+|.. .+|+.+.+..+-.. ....+|..+.
T Consensus       130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~  205 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECF  205 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred             hhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcc
Confidence            778888888998888754 34355677888888888888654 33344445544 57888887665333 5556777788


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcc
Q 045598          192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG  271 (536)
Q Consensus       192 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  271 (536)
                      +++................+......           ......+.....+..+.+.. .+......+|.++..|+.+.+.
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp  273 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMP  273 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECC
T ss_pred             ccceecccccccccccceeecccccc-----------cccccccccccccceEEcCC-cceEcccceeeecccccEEecc
Confidence            88877765544332211111000000           00000011222333333322 1222233455566666666665


Q ss_pred             cccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcC
Q 045598          272 HNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  351 (536)
Q Consensus       272 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  351 (536)
                      ++... .....|.++++|+.+.+. +.++.....+|..                            +.+|+.+++..+ +
T Consensus       274 ~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~----------------------------c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          274 DSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAG----------------------------CISLKSIDIPEG-I  322 (394)
T ss_dssp             TTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTT----------------------------CTTCCEEECCTT-C
T ss_pred             cccce-ecCcccccccccccccCC-CcccccCceeecC----------------------------CCCcCEEEeCCc-c
Confidence            44332 444456666666666664 2344344444443                            345666666543 4


Q ss_pred             cCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          352 IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       352 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      +.....+|.++.+|+++.|..+ ++.+...+|.++++|+.+++.++...   ..++....+|+.+.+..|.+.
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            4445567888888888888654 66566678888888888888887653   145667778888877766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.55  E-value=2.5e-14  Score=123.92  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=92.7

Q ss_pred             cceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccC
Q 045598          341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  420 (536)
Q Consensus       341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  420 (536)
                      -+.+++++|.+. .+|..+.  ++|+.|+|++|.+++..|..|..+++|++|+|++|+++++.+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367888998886 5565554  7899999999999988888899999999999999999977777788899999999999


Q ss_pred             CcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          421 NNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       421 N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      |++++..+..+..+++++.+++.+|+|.|+|+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997777778888899999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.8e-14  Score=125.34  Aligned_cols=134  Identities=21%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             CcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598           16 PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV   95 (536)
Q Consensus        16 ~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   95 (536)
                      .+.++++|+.|++++|+++ .+|. +....++|+.|++++|.+++.  ..+.++++|++|++++|.++ .+|...+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence            4567888999999999888 5553 555456899999999998865  57888899999999999888 67766667788


Q ss_pred             CCCEEEcccCccCccCC-ccccCCCCCCEEEccCCcCcccCCc----CCCCCCccCeeecccCcC
Q 045598           96 NLRFLALSNNNLQGHMF-SRNFNLTNLKWLQLEGSRFVGEIPQ----SLSKCSSLEGLYLNNNSL  155 (536)
Q Consensus        96 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~~  155 (536)
                      +|++|++++|.++.... ..+..+++|++|++++|.+... |.    .+..+++|+.|++++|..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence            88888888888865432 2566777777777777776633 33    255566666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.8e-14  Score=125.35  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             ccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcc--cccCCCCCCEEeCCCCcccccCch----hhhCCCCC
Q 045598          340 LLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKYVESLDLSNNKLNGKIPH----QLVELKTL  413 (536)
Q Consensus       340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L  413 (536)
                      +|++|++++|.+++..+..+..+++|++|++++|.++. .|.  .+..+++|++|++++|+++ ..|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            34444444444443333334555666666666666653 333  5566666666666666665 3333    35666666


Q ss_pred             CEEEccCCcCc
Q 045598          414 EVFSVAYNNLS  424 (536)
Q Consensus       414 ~~L~l~~N~l~  424 (536)
                      +.||+++|...
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            66666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=4e-16  Score=138.75  Aligned_cols=152  Identities=24%  Similarity=0.300  Sum_probs=107.5

Q ss_pred             CCCccEEEccCCcCCCccch------hhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccc
Q 045598          238 CSSLVTLDLSYNRLNGSISD------WVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT  311 (536)
Q Consensus       238 ~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  311 (536)
                      .+.++.++++.+.+.+..+.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++. .|..+..  
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~--   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV--   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH--
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc--
Confidence            34455555555555544443      77888888888888888885 55 77788888888888888773 3333221  


Q ss_pred             hhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCc-ccccCCCCCC
Q 045598          312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVE  390 (536)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~  390 (536)
                                                +++|++|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus        92 --------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           92 --------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             --------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             --------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence                                      4678888888888875 34 57778888888888888885432 4677888888


Q ss_pred             EEeCCCCcccccCch----------hhhCCCCCCEEEccCCcCc
Q 045598          391 SLDLSNNKLNGKIPH----------QLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       391 ~L~L~~n~l~~~~~~----------~~~~l~~L~~L~l~~N~l~  424 (536)
                      +|++++|++++..|.          .+..+++|+.||  +|.++
T Consensus       144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            888888888765543          267788888776  56555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=2.2e-13  Score=117.47  Aligned_cols=110  Identities=22%  Similarity=0.192  Sum_probs=96.9

Q ss_pred             CCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCE
Q 045598          288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQT  367 (536)
Q Consensus       288 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  367 (536)
                      +.+.+++++|.++..+ ..+                              ++.|++|++++|.+++..|..|.++++|++
T Consensus        10 ~~~~l~~s~n~l~~ip-~~~------------------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~   58 (170)
T 3g39_A           10 SGTTVDCSGKSLASVP-TGI------------------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTR   58 (170)
T ss_dssp             ETTEEECTTSCCSSCC-SCC------------------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCEEEeCCCCcCccC-ccC------------------------------CCCCcEEEcCCCcCCccChhhhcCcccCCE
Confidence            3578899998887543 322                              357999999999999988999999999999


Q ss_pred             EeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCC
Q 045598          368 LNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP  428 (536)
Q Consensus       368 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  428 (536)
                      |+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+
T Consensus        59 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             EECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999998888889999999999999999998888889999999999999999997654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=6.5e-13  Score=114.92  Aligned_cols=91  Identities=24%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             ccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          338 LSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      ++.|++|++++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            35799999999999998899999999999999999999987777889999999999999999977777799999999999


Q ss_pred             ccCCcCcccCC
Q 045598          418 VAYNNLSGEIP  428 (536)
Q Consensus       418 l~~N~l~~~~~  428 (536)
                      +++|++.+..+
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            99999996543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.1e-15  Score=135.88  Aligned_cols=154  Identities=22%  Similarity=0.244  Sum_probs=125.2

Q ss_pred             hhCCCCccEEEcccccccccccc------cccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceee
Q 045598          259 VDGLSQLSHLILGHNNLEGEVPI------QLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYI  332 (536)
Q Consensus       259 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (536)
                      +...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            45567788888888888777665      89999999999999999986 33 4433                       


Q ss_pred             eccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCc-hhhhCCC
Q 045598          333 YQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIP-HQLVELK  411 (536)
Q Consensus       333 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  411 (536)
                           +++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..++
T Consensus        69 -----l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~  140 (198)
T 1ds9_A           69 -----MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD  140 (198)
T ss_dssp             -----HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred             -----CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence                 689999999999998 567777778999999999999996 44 68889999999999999985443 5788999


Q ss_pred             CCCEEEccCCcCcccCCCC----------ccccccCCccccccCcC
Q 045598          412 TLEVFSVAYNNLSGEIPEW----------TAQFATFNESSYEGNTF  447 (536)
Q Consensus       412 ~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~l~l~~n~~  447 (536)
                      +|+.|++++|++++..|..          +..+++++.++  +|+.
T Consensus       141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            9999999999998876653          55667777664  5553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=6.9e-13  Score=128.96  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=92.9

Q ss_pred             ceEEccCC-cCcCCCcccccCCCCCCEEeCCC-ccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598          342 SGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       342 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  419 (536)
                      ..++++++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|+++++.|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 7874 676 88899999999996 99998877889999999999999999998888899999999999999


Q ss_pred             CCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598          420 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       420 ~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      +|+|++..+..+..+. ++.+++.+|++.|+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            9999977666665454 89999999999999864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.35  E-value=1.3e-10  Score=114.36  Aligned_cols=311  Identities=9%  Similarity=0.026  Sum_probs=149.2

Q ss_pred             CCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEE
Q 045598           45 LPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL  124 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  124 (536)
                      ..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ ++.+...+|... +|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence            35777777764 456566677888888888888654 55 6777777665 5777666533 444555555443 67777


Q ss_pred             EccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCc
Q 045598          125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       125 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  204 (536)
                      .+..+. ......+|.+. +++.+.+..+ +.......|..+.+++.+.+............+. ...        ... 
T Consensus       119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~--------~~~-  185 (379)
T 4h09_A          119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK--------NKT-  185 (379)
T ss_dssp             ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET--------TSS-
T ss_pred             cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc--------ccc-
Confidence            776542 22333444443 4444444322 2223334455555555555443322100000000 000        000 


Q ss_pred             ccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc
Q 045598          205 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC  284 (536)
Q Consensus       205 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  284 (536)
                       ..........+..+.+.....  .+....+..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.
T Consensus       186 -~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~  260 (379)
T 4h09_A          186 -ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ  260 (379)
T ss_dssp             -EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred             -eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence             000000111222222222111  222333555566666666443 22233445556666666666544 3434445566


Q ss_pred             CCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCC
Q 045598          285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTR  364 (536)
Q Consensus       285 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  364 (536)
                      .+.+|+.+.+..+ +......+|..                            +.+|+.+.+.++.++.....+|.++.+
T Consensus       261 ~~~~l~~i~l~~~-i~~i~~~aF~~----------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          261 NCTALKTLNFYAK-VKTVPYLLCSG----------------------------CSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TCTTCCEEEECCC-CSEECTTTTTT----------------------------CTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             eeehhcccccccc-ceecccccccc----------------------------ccccccccccccccceehhhhhcCCCC
Confidence            6666666666432 22222333322                            345555555555554444455555566


Q ss_pred             CCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCC
Q 045598          365 IQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVEL  410 (536)
Q Consensus       365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  410 (536)
                      |+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++
T Consensus       312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            666665433 44344455556666665555433 443444455444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.33  E-value=3.3e-10  Score=111.41  Aligned_cols=317  Identities=12%  Similarity=0.084  Sum_probs=189.7

Q ss_pred             cCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCC
Q 045598           17 IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVN   96 (536)
Q Consensus        17 ~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~   96 (536)
                      +....+|+.+.+.. .++ .++...|..+.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++...|.. .+
T Consensus        42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~  114 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD  114 (379)
T ss_dssp             GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred             cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence            44567899999864 566 788888888999999999754 776777889988 6888887654 55 777777765 48


Q ss_pred             CCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccC
Q 045598           97 LRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN  176 (536)
Q Consensus        97 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  176 (536)
                      |+.+.+..+ ++.+...++.+. +++...+..+ +......+|..+.+++.+.+..+.........+ .....       
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~-------  183 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNKN-------  183 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEETT-------
T ss_pred             cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce-ecccc-------
Confidence            999999765 444555566554 5777766554 344556678888888888776543221100000 00000       


Q ss_pred             CccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccc
Q 045598          177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS  256 (536)
Q Consensus       177 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  256 (536)
                          ......+.....+..+.+.................++.+.+..+-  ..+...+|..+.+|+.+.+..+ ++....
T Consensus       184 ----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~  256 (379)
T 4h09_A          184 ----KTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGS  256 (379)
T ss_dssp             ----SSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred             ----cceeccccccccccccccccceeEEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCc
Confidence                011112222233333333222111111111123344444443321  1344445667777777777654 444445


Q ss_pred             hhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccc
Q 045598          257 DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGK  336 (536)
Q Consensus       257 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (536)
                      .+|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.+...+|..                           
T Consensus       257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~---------------------------  308 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD---------------------------  308 (379)
T ss_dssp             TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT---------------------------
T ss_pred             cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC---------------------------
Confidence            56667777777777543 44344556777777777777766666555666655                           


Q ss_pred             cccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCC
Q 045598          337 VLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYV  389 (536)
Q Consensus       337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  389 (536)
                       +.+|+.+++..+ ++.....+|.++++|+++.+..+ ++.+...+|.++..+
T Consensus       309 -c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          309 -CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             -CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             -CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence             456777777543 44455677888888998888655 554556677776443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=5.3e-12  Score=122.70  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=92.2

Q ss_pred             ccccceEEccC-CcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          338 LSLLSGLDLSC-NKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       338 ~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      +++|++|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            56899999996 999988889999999999999999999999999999999999999999999977777777666 9999


Q ss_pred             EccCCcCcccCC-CCccccccCCccccccCcCCCCCC
Q 045598          417 SVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       417 ~l~~N~l~~~~~-~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      ++++|++.+... .++..+.......+..+.+.|..+
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            999999987433 122222222334455567777543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2e-13  Score=133.13  Aligned_cols=165  Identities=21%  Similarity=0.197  Sum_probs=98.4

Q ss_pred             CCccEEEccCCcCCCccchhhhC-----CCCccEEEcccccccccccccc-cCCCCCCEEecCCCcCCCCCCccccccch
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDG-----LSQLSHLILGHNNLEGEVPIQL-CELNQLQLLDLSNNNLHGPIPSCFDNTTL  312 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  312 (536)
                      ++|++|++++|.++......+..     .++|++|++++|.++......+ ..+++|+.|++++|.++......+...- 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L-  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL-  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence            45667777777665433332222     2567777777776654332222 2345677777777766533222221100 


Q ss_pred             hhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC----CcccccCCCCCCEEeCCCccCCCC----Cccccc
Q 045598          313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP----IPLQIGNLTRIQTLNLSHNNLTGS----IPSTFS  384 (536)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~  384 (536)
                                            ....+.|++|++++|.++..    ++..+..+++|++|+|++|.+++.    +...+.
T Consensus       151 ----------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          151 ----------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             ----------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             ----------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence                                  00134677777777776542    233446677888888888887642    244566


Q ss_pred             CCCCCCEEeCCCCcccccC----chhhhCCCCCCEEEccCCcCccc
Q 045598          385 NLKYVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       385 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      ..++|++|+|++|.+++..    ...+...++|+.|++++|.++..
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            6778888888888887532    33445568888888888888753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=3.1e-13  Score=131.84  Aligned_cols=160  Identities=18%  Similarity=0.126  Sum_probs=96.2

Q ss_pred             CCCCcEEEccCCCCcccCCccC----C-CCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccc----
Q 045598           45 LPSLYAFNNSMNALDGSIPSSF----G-NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRN----  115 (536)
Q Consensus        45 l~~L~~L~l~~n~~~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----  115 (536)
                      ++.|+.|++++|.++......+    . ..++|++|+|++|.+++.....+...+.+|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3577888888887765333222    2 226788888888877644344444455677888888887765433333    


Q ss_pred             -cCCCCCCEEEccCCcCccc----CCcCCCCCCccCeeecccCcCCCCC----CcccCCCCCCCeEEccCCccccCC---
Q 045598          116 -FNLTNLKWLQLEGSRFVGE----IPQSLSKCSSLEGLYLNNNSLSGKI----PRWLGNLTRLQCIIMPNNHLEGPI---  183 (536)
Q Consensus       116 -~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~---  183 (536)
                       ...++|++|++++|.+...    ++..+..+++|++|++++|.+.+..    ...+...++|++|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2456777777777776532    2233355667777777777765322    334455566777777777665322   


Q ss_pred             -cccccCCCCCCEEEccCCcCc
Q 045598          184 -PVEFCQLDLLQILDISDNNIS  204 (536)
Q Consensus       184 -~~~~~~l~~L~~L~l~~n~~~  204 (536)
                       ...+...++|++|++++|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence             223334566777777766665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=2.4e-09  Score=103.40  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=84.1

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccccccccccccccc--CCCCCCEEecCCC--cCCCCCCcccccc
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC--ELNQLQLLDLSNN--NLHGPIPSCFDNT  310 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~~~~~~~~~~~~~  310 (536)
                      +..+|+|+.|.++++.-. ..+. + .+++|+.|++..|.+.......+.  .+|+|+.|+|+.+  ...+..  .+...
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l  242 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF  242 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence            456678888888776311 1222 2 267888888887777644433343  5788888887531  111110  00000


Q ss_pred             chhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccc---cCCCCCCEEeCCCccCCCC----Ccccc
Q 045598          311 TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQI---GNLTRIQTLNLSHNNLTGS----IPSTF  383 (536)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~~  383 (536)
                      .                   .......+++|++|++.+|.+.+..+..+   ..+++|++|+|+.|.+.+.    ++..+
T Consensus       243 ~-------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L  303 (362)
T 2ra8_A          243 R-------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV  303 (362)
T ss_dssp             G-------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred             H-------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence            0                   00001125667777777766654322222   2356677777777766642    22333


Q ss_pred             cCCCCCCEEeCCCCcccccCchhhhC-CCCCCEEEccCCc
Q 045598          384 SNLKYVESLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNN  422 (536)
Q Consensus       384 ~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~  422 (536)
                      ..+++|+.|+|++|.++...-..+.. +  ...+++++++
T Consensus       304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          304 DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45566777777776665433333332 2  2445666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.70  E-value=1.1e-08  Score=98.64  Aligned_cols=161  Identities=17%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             CCCCccEEEccCCcCC---------CccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598          237 NCSSLVTLDLSYNRLN---------GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF  307 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  307 (536)
                      .+++|+.|.+.+....         +.+...+..+|+|+.|.+++|.-. ..+. +. +++|+.|++..+.+.......+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence            4456666666543221         134466778899999999988422 2232 33 7899999998877543221111


Q ss_pred             cccchhhhccccceeEEeeccceeeeccccccccceEEccC--CcCcCC-----Ccccc--cCCCCCCEEeCCCccCCCC
Q 045598          308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSC--NKLIGP-----IPLQI--GNLTRIQTLNLSHNNLTGS  378 (536)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~  378 (536)
                      ..                          ..+++|++|+|+.  +...+.     +...+  ..+++|+.|+|++|.+.+.
T Consensus       214 ~~--------------------------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~  267 (362)
T 2ra8_A          214 LG--------------------------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV  267 (362)
T ss_dssp             HH--------------------------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred             HH--------------------------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence            10                          1267899999863  221111     11122  3479999999999988743


Q ss_pred             Ccccc---cCCCCCCEEeCCCCcccccC----chhhhCCCCCCEEEccCCcCccc
Q 045598          379 IPSTF---SNLKYVESLDLSNNKLNGKI----PHQLVELKTLEVFSVAYNNLSGE  426 (536)
Q Consensus       379 ~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~  426 (536)
                      .+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++..
T Consensus       268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            22222   35789999999999988643    33335679999999999988753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.43  E-value=1.4e-07  Score=76.34  Aligned_cols=62  Identities=16%  Similarity=0.276  Sum_probs=34.3

Q ss_pred             CCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC------------------CCCCCCCCCCcccCCCCcCcc
Q 045598          413 LEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL------------------PICRSPATMSEASIGNERDDN  474 (536)
Q Consensus       413 L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l------------------~~C~~~~~~~~~~~~~~~~~~  474 (536)
                      |+.|+|++|+|+...+..+..+++++.+++.+|||.|+|.+                  ..|..|..++++.+..+..++
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~  112 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDE  112 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHH
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHH
Confidence            34444444444433333333444444455555566666643                  258899988888776666544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=4.2e-08  Score=85.36  Aligned_cols=42  Identities=10%  Similarity=0.059  Sum_probs=19.4

Q ss_pred             hhCCCCccEEEcccc-ccccc----ccccccCCCCCCEEecCCCcCC
Q 045598          259 VDGLSQLSHLILGHN-NLEGE----VPIQLCELNQLQLLDLSNNNLH  300 (536)
Q Consensus       259 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~  300 (536)
                      +...++|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            333445555555555 44321    1222334455555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=3.8e-08  Score=85.67  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=89.2

Q ss_pred             ccccccCCCCCCEEecCCC-cCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC--
Q 045598          279 VPIQLCELNQLQLLDLSNN-NLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI--  355 (536)
Q Consensus       279 ~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--  355 (536)
                      +...+...++|++|++++| .+.......+...                        ....+.|++|+|++|.+....  
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~------------------------L~~~~~L~~L~Ls~n~i~~~g~~   83 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEA------------------------LKTNTYVKKFSIVGTRSNDPVAF   83 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHH------------------------HTTCCSCCEEECTTSCCCHHHHH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHH------------------------HHhCCCcCEEECcCCCCChHHHH
Confidence            4445677899999999999 7764322221110                        011467999999999987533  


Q ss_pred             --cccccCCCCCCEEeCCCccCCCC----CcccccCCCCCCEEeC--CCCccccc----CchhhhCCCCCCEEEccCCcC
Q 045598          356 --PLQIGNLTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDL--SNNKLNGK----IPHQLVELKTLEVFSVAYNNL  423 (536)
Q Consensus       356 --~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l  423 (536)
                        ...+...++|++|+|++|.+.+.    +...+...++|++|+|  ++|.+...    +...+...++|+.|++++|.+
T Consensus        84 ~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              34456678999999999999853    3456777889999999  88998754    334556678999999999987


Q ss_pred             cc
Q 045598          424 SG  425 (536)
Q Consensus       424 ~~  425 (536)
                      ..
T Consensus       164 ~~  165 (185)
T 1io0_A          164 GP  165 (185)
T ss_dssp             HH
T ss_pred             Ch
Confidence            63

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=8.2e-07  Score=81.13  Aligned_cols=62  Identities=29%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             ccccceEEccCCcCcC--CCcccccCCCCCCEEeCCCccCCCCCcccccCCC--CCCEEeCCCCcccc
Q 045598          338 LSLLSGLDLSCNKLIG--PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK--YVESLDLSNNKLNG  401 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~  401 (536)
                      ++.|++|+|++|.+++  .++..+..+++|+.|+|++|.+.+.  +.+..+.  +|++|+|++|.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            3455555555555554  2233344555555555555555543  2222222  55555555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=1.3e-07  Score=86.44  Aligned_cols=96  Identities=23%  Similarity=0.328  Sum_probs=67.5

Q ss_pred             EEccCCcCc---CCCcccccCCCCCCEEeCCCccCCCC--CcccccCCCCCCEEeCCCCcccccCchhhhCCC--CCCEE
Q 045598          344 LDLSCNKLI---GPIPLQIGNLTRIQTLNLSHNNLTGS--IPSTFSNLKYVESLDLSNNKLNGKIPHQLVELK--TLEVF  416 (536)
Q Consensus       344 L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L  416 (536)
                      ++++.|...   ...+.....+++|+.|+|++|.+++.  ++..+..+++|+.|+|++|++++.  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            556666322   22222235688999999999999973  346677899999999999999865  2334444  89999


Q ss_pred             EccCCcCcccCCC-------CccccccCCccc
Q 045598          417 SVAYNNLSGEIPE-------WTAQFATFNESS  441 (536)
Q Consensus       417 ~l~~N~l~~~~~~-------~~~~~~~l~~l~  441 (536)
                      ++++|++.+..|.       .+..+++++.++
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            9999999976653       234456665543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.23  E-value=2.5e-07  Score=78.34  Aligned_cols=84  Identities=11%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc-CCCCCcccccCC----CCCCEEeCCCCc-ccccCchhhhCCCC
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL----KYVESLDLSNNK-LNGKIPHQLVELKT  412 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  412 (536)
                      ..|++||+++|.++...-..+.++++|++|+|++|. +++.--..+..+    ++|++|+|++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            369999999999988777778899999999999995 665333344443    479999999984 88766667788999


Q ss_pred             CCEEEccCCc
Q 045598          413 LEVFSVAYNN  422 (536)
Q Consensus       413 L~~L~l~~N~  422 (536)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.06  E-value=1.3e-06  Score=73.86  Aligned_cols=82  Identities=12%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCc-CccccchhHhhCC----CCCCEEEcccCc-cCccCCccccCCCC
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNH-LTGEIPEHLAVGC----VNLRFLALSNNN-LQGHMFSRNFNLTN  120 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  120 (536)
                      .|+.||++++.+++.....+.++++|++|+|++|. +++..-..+ ..+    ++|++|+|++|. ++......+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            56777777777666555566677777777777764 553222223 222    356677776653 55444444555666


Q ss_pred             CCEEEccCC
Q 045598          121 LKWLQLEGS  129 (536)
Q Consensus       121 L~~L~L~~n  129 (536)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.0011  Score=53.15  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             ceEEccCCcCc-CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCccc
Q 045598          342 SGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN  400 (536)
Q Consensus       342 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  400 (536)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35667777665 23454333  36777777777777666666777777777777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.02  E-value=0.00017  Score=62.17  Aligned_cols=108  Identities=16%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             CCCcEEEccCC-CCcc----cCCccCCCCCCCCEEEccCCcCcccc----chhHhhCCCCCCEEEcccCccCccC----C
Q 045598           46 PSLYAFNNSMN-ALDG----SIPSSFGNMKFLQFLDLSNNHLTGEI----PEHLAVGCVNLRFLALSNNNLQGHM----F  112 (536)
Q Consensus        46 ~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~  112 (536)
                      +.|+.|+|+++ .+.+    .+..++...+.|+.|+|++|.+.+..    .+.+ ..-+.|++|+|+.|.|....    .
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHHHHH
Confidence            45666666653 5443    23344555666666666666665321    1112 23355667777766665432    2


Q ss_pred             ccccCCCCCCEEEccCCc---Cccc----CCcCCCCCCccCeeecccCc
Q 045598          113 SRNFNLTNLKWLQLEGSR---FVGE----IPQSLSKCSSLEGLYLNNNS  154 (536)
Q Consensus       113 ~~~~~l~~L~~L~L~~n~---i~~~----~~~~~~~l~~L~~L~l~~n~  154 (536)
                      .++..-+.|++|+|+++.   +...    +..++..-++|+.|+++.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            234444567777776542   2211    12334455677777776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.82  E-value=0.00033  Score=60.36  Aligned_cols=85  Identities=11%  Similarity=0.153  Sum_probs=61.0

Q ss_pred             ccccceEEccCC-cCcCC----CcccccCCCCCCEEeCCCccCCCC----CcccccCCCCCCEEeCCCCcccccC----c
Q 045598          338 LSLLSGLDLSCN-KLIGP----IPLQIGNLTRIQTLNLSHNNLTGS----IPSTFSNLKYVESLDLSNNKLNGKI----P  404 (536)
Q Consensus       338 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~  404 (536)
                      -+.|++|+|++| .+...    +.+.+...+.|+.|+|++|.+.+.    +.+.+..-+.|++|+|++|.|....    -
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            357899999885 66532    345567778999999999998743    2334455588999999999987532    2


Q ss_pred             hhhhCCCCCCEEEccCCc
Q 045598          405 HQLVELKTLEVFSVAYNN  422 (536)
Q Consensus       405 ~~~~~l~~L~~L~l~~N~  422 (536)
                      +++..-+.|+.|++++|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHTTTTCCCSEEECCCCS
T ss_pred             HHHhhCCceeEEECCCCc
Confidence            345556779999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.8 bits (229), Expect = 5e-21
 Identities = 65/396 (16%), Positives = 129/396 (32%), Gaps = 39/396 (9%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
             +   N    +     D + +L A    + ++DG        +  L  ++ SNN LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
            P         L  + ++NN +       N        L       +  +    +     
Sbjct: 82  TPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL- 137

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
               L++N++S           +          L+    +   +   +    +SD ++  
Sbjct: 138 ---ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQL 265
            L +         +  + N +            ++L  L L+ N+L       +  L+ L
Sbjct: 195 KLTNLES------LIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNL 243

Query: 266 SHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFT 325
           + L L +N +    P  L  L +L  L L  N +    P                  E  
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--------GLTALTNLELN 293

Query: 326 TKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSN 385
              +  I     L  L+ L L  N +    P  + +LT++Q L  ++N ++    S+ +N
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 386 LKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 421
           L  +  L   +N+++   P  L  L  +    +   
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 4e-13
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 16/186 (8%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           P+     L  L ++ N  +    +     L +L   + + N +    P     +  L  L
Sbjct: 214 PLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTEL 268

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEI 135
            L  N ++   P        N     L  N  Q    S   NL NL +L L  +      
Sbjct: 269 KLGANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 136 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQI 195
           P  +S  + L+ L+  NN +S      L NLT +  +   +N +    P     L  +  
Sbjct: 324 P--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 196 LDISDN 201
           L ++D 
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%)

Query: 68  NMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLE 127
            +       L   ++T  + +        +  L      ++         L NL  +   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 128 GSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEF 187
            ++     P  L   + L  + +NNN ++   P           +         P+    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 188 CQLDLLQIL-------------DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 234
               L                  +   +    +       ++  +       +       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDL 294
               ++L +L  + N+++      +   + L  L L  N L+      L  L  L  LDL
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 295 SNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP 354
           +NN +    P                                 L+ L+ L L  N++   
Sbjct: 249 ANNQISNLAPLSG------------------------------LTKLTELKLGANQISNI 278

Query: 355 IPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLE 414
            PL    LT +  L L+ N L     S  SNLK +  L L  N ++   P  +  L  L+
Sbjct: 279 SPLA--GLTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 415 VFSVAYNNLSG 425
               A N +S 
Sbjct: 333 RLFFANNKVSD 343

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 59/312 (18%), Positives = 112/312 (35%), Gaps = 29/312 (9%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
           +L  +  LQ +      +    +   ++L  +  +NN L+   P  L NLT+L  I+M N
Sbjct: 42  DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N +    P+          L  +       L +  +   ++    + + +       +  
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
                            +    +  L+ L  L +  N         L +L  L+ L  +N
Sbjct: 158 QL---------SFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIATN 206

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           N +    P               ++       +  I     L+ L+ LDL+ N++    P
Sbjct: 207 NQISDITPLGILTNL--------DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 258

Query: 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
           L    LT++  L L  N ++   P   + L  + +L+L+ N+L    P     LK L   
Sbjct: 259 L--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYL 312

Query: 417 SVAYNNLSGEIP 428
           ++ +NN+S   P
Sbjct: 313 TLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 44/275 (16%), Positives = 91/275 (33%), Gaps = 21/275 (7%)

Query: 165 NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224
            L      ++   ++   +      LD +  L      I  S+    +  ++ Q++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284
            L          N + LV + ++ N++                L          +     
Sbjct: 77  QLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 285 ---------ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQG 335
                     ++ +  L    +       +   +          E+ + ++  ++ I   
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 336 KVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLS 395
             L+ L  L  + N++    PL I   T +  L+L+ N L      T ++L  +  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           NN+++   P  L  L  L    +  N +S   P  
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLA 282

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 86.0 bits (211), Expect = 5e-19
 Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 9/267 (3%)

Query: 193 LQILDISDNNISG--SLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 249
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 250 RLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDN 309
            ++G+I D++  +  L  L   +N L G +P  +  L  L  +    N + G IP  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-- 169

Query: 310 TTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLN 369
                  ++      +   +         +L          ++      +    +     
Sbjct: 170 ---GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 370 LSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 429
               N            K +  LDL NN++ G +P  L +LK L   +V++NNL GEIP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 430 WTAQFATFNESSYEGNTFLCGLPLPIC 456
                  F+ S+Y  N  LCG PLP C
Sbjct: 287 GG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.8 bits (208), Expect = 9e-19
 Identities = 64/290 (22%), Positives = 105/290 (36%), Gaps = 27/290 (9%)

Query: 19  SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
              R+  LD+S  N     P                       IPSS  N+ +L FL + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 79  NNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQS 138
             +               L +L +++ N+ G +      +  L  L    +   G +P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 139 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDI 198
           +S   +L G+  + N +SG IP   G+ ++L   +  + +              L  +D+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 199 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDW 258
           S N + G     F      Q              G      +L  LDL  NR+ G++   
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 259 VDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH--GPIPSC 306
           +  L  L  L +  NNL GE+P Q   L +  +   +NN      P+P+C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 64/263 (24%), Positives = 104/263 (39%), Gaps = 9/263 (3%)

Query: 140 SKCSSLEGLYLNNNSLSGK--IPRWLGNLTRLQCIIMPNNH-LEGPIPVEFCQLDLLQIL 196
           ++   +  L L+  +L     IP  L NL  L  + +   + L GPIP    +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
            I+  N+SG++P     +                   +  +  +LV +    NR++G+I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 257 DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK 316
           D     S+L   +    N              L  +DLS N L G     F +    +K 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLT 376
            + +           +        L+GLDL  N++ G +P  +  L  + +LN+S NNL 
Sbjct: 227 HLAKNSLAFDLGKVGLS-----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 377 GSIPSTFSNLKYVESLDLSNNKL 399
           G IP    NL+  +    +NNK 
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 25/219 (11%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
           P  +           +        +    + +L   + S NAL G++P S  ++  L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGS------ 129
               N ++G IP+           + +S N L G +     NL                 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 130 ----------------RFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCII 173
                             +      +    +L GL L NN + G +P+ L  L  L  + 
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 174 MPNNHLEGPIPVEFCQLDLLQILDISDNNI--SGSLPSC 210
           +  N+L G IP +   L    +   ++N       LP+C
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.5 bits (210), Expect = 5e-19
 Identities = 51/273 (18%), Positives = 94/273 (34%), Gaps = 17/273 (6%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
           ++P+ L        L L NN ++        NL  L  +I+ NN +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           + L +S N +   LP        +       +   +       N   +V L  +  + +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
             +    G+ +LS++ +   N+     I       L  L L  N +     +        
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
            K  +         N +          L  L L+ NKL+  +P  + +   IQ + L +N
Sbjct: 198 AKLGLSFNSISAVDNGSLANT----PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 252

Query: 374 NLTGSIPSTF------SNLKYVESLDLSNNKLN 400
           N++    + F      +       + L +N + 
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.2 bits (199), Expect = 1e-17
 Identities = 46/270 (17%), Positives = 95/270 (35%), Gaps = 15/270 (5%)

Query: 14  RLPIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQ 73
           ++P        +LD+ NN        +  + L +L+      N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 74  FLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVG 133
            L LS N L  E+PE +      LR        ++  +F+    +  +  L     +  G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLL 193
               +      L  + + + +++        +LT L    +  N +          L+ L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 194 QILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
             L +S N+IS            ++++HL+ N L          +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNIS 255

Query: 253 GSISDWVDG------LSQLSHLILGHNNLE 276
              S+           +  S + L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 3e-17
 Identities = 55/331 (16%), Positives = 104/331 (31%), Gaps = 45/331 (13%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
           L+ +  S+  L  ++P+ L     +   L L NN +         NL NL  L L  ++ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
               P + +    LE LYL+ N L     +    L  L+        +   +     Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 251
           ++++      +      +      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 252 NGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTT 311
               +  + GL+ L+ L L  N++       L     L+ L L+NN L        D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 312 LHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG------PIPLQIGNLTRI 365
           +                               + L  N +          P         
Sbjct: 244 IQV-----------------------------VYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 366 QTLNLSHNNLTGS--IPSTFSNLKYVESLDL 394
             ++L  N +      PSTF  +    ++ L
Sbjct: 275 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 40/211 (18%), Positives = 69/211 (32%), Gaps = 8/211 (3%)

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
                LDL  N++          L  L  LIL +N +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
           L                +++R      TK    ++ G    ++  L  +  K  G     
Sbjct: 91  LKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418
              + ++  + ++  N+T        +L     L L  NK+       L  L  L    +
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 419 AYNNLSGEIPEWTAQFATFNESSYEGNTFLC 449
           ++N++S       A      E     N  + 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 6e-13
 Identities = 46/238 (19%), Positives = 84/238 (35%), Gaps = 11/238 (4%)

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           L+++  SD  +   +P    P     + L  N +   +K G F N  +L TL L  N+++
Sbjct: 12  LRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKIS 68

Query: 253 GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312
                    L +L  L L  N L+    +       LQ L +  N +     S F+    
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
               ++      ++      +QG  +  LS + ++   +     +  G    +  L+L  
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQG--MKKLSYIRIADTNIT---TIPQGLPPSLTELHLDG 180

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           N +T    ++   L  +  L LS N ++      L     L    +  N L       
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 3e-17
 Identities = 48/276 (17%), Positives = 81/276 (29%), Gaps = 8/276 (2%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
                   +  +PV I      ++   N    +     +SF   + L  L L +N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIPAASQRIFLHGNR---ISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
                    +  +     N  L+    +    L  L  L L+        P      ++L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           + LYL +N+L         +L  L  + +  N +       F  L  L  L +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQL 265
             P  F  L               L         +L  L L+ N             + L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWL 250

Query: 266 SHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHG 301
                  + +   +P     L    L  L+ N+L G
Sbjct: 251 QKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 4e-12
 Identities = 52/261 (19%), Positives = 94/261 (36%), Gaps = 11/261 (4%)

Query: 119 TNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNH 178
              + + L G+R       S   C +L  L+L++N L+         L  L+ + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 179 LEGPI-PVEFCQLDLLQILDISDNNISGSLPSCFHP-LSIKQVHLSKNMLHGQLKRGTFF 236
               + P  F  L  L  L +    +    P  F    +++ ++L  N L   L   TF 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
           +  +L  L L  NR++        GL  L  L+L  N +    P    +L +L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIP 356
           NNL              +  ++ +                + + L     S +++   +P
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-----LWAWLQKFRGSSSEVPCSLP 265

Query: 357 LQIGNLTRIQTLNLSHNNLTG 377
            ++          L+ N+L G
Sbjct: 266 QRLAGR---DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 41/215 (19%), Positives = 66/215 (30%), Gaps = 3/215 (1%)

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
           ++   + L  NR++   +        L+ L L  N L          L  L+ LDLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
               +     +          ++                L     L L  N L       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ---YLYLQDNALQALPDDT 148

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418
             +L  +  L L  N ++      F  L  ++ L L  N++    PH   +L  L    +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 419 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453
             NNLS    E  A            N ++C    
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 5e-09
 Identities = 44/290 (15%), Positives = 87/290 (30%), Gaps = 22/290 (7%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           LD++  N    +   +  +   + AF    + +D  +   F   + +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
               +   C  L+ L+L    L   + +     +NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
               LN +       + +          +   +L G                      S 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------SD 166

Query: 206 SLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY-NRLNGSISDWVDGLSQ 264
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 265 LSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHE 314
           L  L +     +G + +       L  L ++ ++          N    E
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 36/246 (14%), Positives = 79/246 (32%), Gaps = 7/246 (2%)

Query: 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235
             +L   +        ++       + +   L   F P  ++ + LS +++      G  
Sbjct: 9   GKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ-----LCELNQLQ 290
             CS L  L L   RL+  I + +   S L  L L   +   E  +Q        L++L 
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 291 LLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 350
           L    +        +    +    +  +    +   K+       +  +L+         
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 351 LIGPIPLQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE 409
           L      +   L  +Q L+LS   ++          +  +++L +     +G +      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 410 LKTLEV 415
           L  L++
Sbjct: 248 LPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 31/214 (14%), Positives = 62/214 (28%), Gaps = 9/214 (4%)

Query: 19  SHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLS 78
           S  R+  +D+SN+         I      L   +     L   I ++      L  L+LS
Sbjct: 44  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103

Query: 79  NNH-LTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ-------LEGSR 130
                +    + L   C  L  L LS          +       + +         +  +
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 131 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQ 189
                       + +     ++  L     +    L  LQ + +     +     +E  +
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 190 LDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 223
           +  L+ L +      G+L      L   Q++ S 
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 31/134 (23%)

Query: 290 QLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCN 349
           Q LDL+  NLH  +                               G++LS          
Sbjct: 3   QTLDLTGKNLHPDVT------------------------------GRLLSQGVIAFRCPR 32

Query: 350 KLIGPIPLQIGNLTRIQTLNLSHNNLTG-SIPSTFSNLKYVESLDLSNNKLNGKIPHQLV 408
             +     +  +  R+Q ++LS++ +   ++    S    +++L L   +L+  I + L 
Sbjct: 33  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 92

Query: 409 ELKTLEVFSVAYNN 422
           +   L   +++  +
Sbjct: 93  KNSNLVRLNLSGCS 106

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 42/236 (17%), Positives = 64/236 (27%), Gaps = 32/236 (13%)

Query: 65  SFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWL 124
               +     ++    +LT  +P  L     +   L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 125 QLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP 184
            L+                              ++   L  L  L         L     
Sbjct: 61  NLD-----------------------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 185 VEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 244
                     +LD+S N ++         L   Q    K      L  G       L  L
Sbjct: 98  TLPAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153

Query: 245 DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
            L+ N L    +  ++GL  L  L+L  N+L   +P      + L    L  N   
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 11/215 (5%)

Query: 186 EFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 245
           E  ++     ++    N++ +LP    P     +HLS+N+L+      T    + L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYT-FSLATLMPYTRLTQLN 61

Query: 246 LSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPS 305
           L    L          L  L  L L HN L+    +         L    N     P+ +
Sbjct: 62  LDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 306 CFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRI 365
                 L E      + +     +                L+ N L       +  L  +
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-----SLANNNLTELPAGLLNGLENL 174

Query: 366 QTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLN 400
            TL L  N+L  +IP  F     +    L  N   
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 8/202 (3%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGE 85
           ++    N    +P ++          + S N L     ++      L  L+L    LT  
Sbjct: 15  VNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 86  IPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSL 145
             +      + +      ++N    +      L  L  L +  +R       +L     L
Sbjct: 71  QVDG----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 146 EGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 205
           + LYL  N L    P  L    +L+ + + NN+L          L+ L  L + +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 206 SLPSCFHPLSIKQVHLSKNMLH 227
                F    +    L  N   
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 34/185 (18%), Positives = 55/185 (29%), Gaps = 8/185 (4%)

Query: 239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNN 298
                L LS N L       +   ++L+ L L                    L  L   +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-------LTKLQVDGTLPVLGTLD 83

Query: 299 LHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQ 358
           L                        F       +   + L  L  L L  N+L    P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 359 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSV 418
           +    +++ L+L++NNLT       + L+ +++L L  N L   IP        L    +
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202

Query: 419 AYNNL 423
             N  
Sbjct: 203 HGNPW 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 6e-08
 Identities = 58/439 (13%), Positives = 109/439 (24%), Gaps = 34/439 (7%)

Query: 26  LDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG----SIPSSFGNMKFLQFLDLSNNH 81
           LDI           E+  +L            L       I S+      L  L+L +N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 82  LTGEIPEHLAVG--CVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSL 139
           L       +  G    + +   LS  N            + L+ L       + +     
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 140 SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDIS 199
           +    L    L+      K+     +L+   C  + +     P   E    +        
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186

Query: 200 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWV 259
                G   S     ++K         + +   G   + +SL  L L  N+L       +
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 246

Query: 260 DGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR 319
                     L    +           +  ++L    +     +                
Sbjct: 247 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306

Query: 320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK-------------------LIGPIPLQIG 360
                      ++      +       S                      +         
Sbjct: 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 366

Query: 361 NLTRIQTLNLSHNNLTG----SIPSTFSNLKYVESLDLSNNKLNGKIPHQLVE-----LK 411
             + ++ L L+  +++     S+ +T      +  LDLSNN L      QLVE       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 412 TLEVFSVAYNNLSGEIPEW 430
            LE   +     S E+ + 
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 341 LSGLDLSCNKLI-GPIPLQIGNLTRIQTLNLSHNNLTG----SIPSTFSNLKYVESLDLS 395
           +  LD+ C +L        +  L + Q + L    LT      I S       +  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 396 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 430
           +N+L     H +++        +   +L       
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 4e-06
 Identities = 42/404 (10%), Positives = 96/404 (23%), Gaps = 13/404 (3%)

Query: 17  IHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLD 76
           +  +  L  L++ +N         +   L +       ++  +  +  +   +       
Sbjct: 51  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 110

Query: 77  LSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP 136
           L            L    + L    L +   +       +   +    +   S    +  
Sbjct: 111 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 137 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQIL 196
                 S+ +        L   +      L  L+                          
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 197 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIS 256
               +N  G +        +         L       T   C           R   S+ 
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD----LCRVLRAKESLK 286

Query: 257 DWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKK 316
           +     ++L              P    E   ++    +             N  L E +
Sbjct: 287 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 346

Query: 317 QIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGPIPLQIGNLTRIQTLNLSH 372
               + E           G+  S+L  L L+   +       +   +     ++ L+LS+
Sbjct: 347 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 406

Query: 373 NNLTGSIPSTFS-----NLKYVESLDLSNNKLNGKIPHQLVELK 411
           N L  +               +E L L +   + ++  +L  L+
Sbjct: 407 NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 20/100 (20%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
           +Q LD+    L+      L       + + L +  L                        
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--------------------TEAR 43

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQC 171
             +I  +L    +L  L L +N L       +    +   
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 63  PSSFGNMKFLQFLDLSNNHLTGEIPEHLA---VGCVNLRFLALSNNNLQGHMFSR----- 114
                    L+ L L++  ++      LA   +   +LR L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLS 156
                 L+ L L    +  E+         L+ L  +  SL 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 4/98 (4%)

Query: 214 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG----SISDWVDGLSQLSHLI 269
           L I+ + +    L                 + L    L       IS  +     L+ L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 270 LGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF 307
           L  N L       + +  Q     +   +L     +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 3/163 (1%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
            IP           L L++N L     + L     +L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           ++ LQL  ++      +       L+ L L +N +S  +P    +L  L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSK 223
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 38/189 (20%), Positives = 72/189 (38%), Gaps = 10/189 (5%)

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
             +D +   +   +P    PL   ++ L+ N L      G F     LV L+L  N+L G
Sbjct: 11  TTVDCTGRGLK-EIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
              +  +G S +  L LG N ++         L+QL+ L+L +N +   +P  F++    
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
               +         ++A+  +      L+G    C             +  +Q  +L H+
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG--------APSKVRDVQIKDLPHS 180

Query: 374 NLTGSIPST 382
               S  ++
Sbjct: 181 EFKCSSENS 189

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 28/307 (9%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-------NLTRLQCIIMPNNHLEGPIPVE 186
            +   L +  S++ + L+ N++  +  RWL        +L   +   +    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 187 FCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 246
              L    +     + +  S  +         +         +                +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 247 SYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCE----LNQLQLLDLSNNNLHGP 302
           +      +++        L  +I G N LE     +  +       L  + +  N +   
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 303 IPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQ-----GKVLSLLSGLDLSCNKLIGPIPL 357
                    L   ++++                     K    L  L L+   L      
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 358 QIGN------LTRIQTLNLSHNNLTGSIPST-----FSNLKYVESLDLSNNKLNGKIPHQ 406
            + +         +QTL L +N +      T        +  +  L+L+ N+   +    
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDV 320

Query: 407 LVELKTL 413
           + E++ +
Sbjct: 321 VDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 28/285 (9%), Positives = 65/285 (22%), Gaps = 25/285 (8%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVG---CVNLRFLALSNN---NLQGHMFSR 114
           S+ +       ++ + LS N +  E    L+       +L     S+     ++  +   
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 115 NFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIM 174
              L        +                     +L+ ++    +      L       +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 175 PNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGT 234
                E  +  +      L+ +    N +       +         L    +     R  
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 235 FFNCSSLVTL-------------DLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI 281
                 L  L             +   +  + +++  +     L  L L    L      
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261

Query: 282 QL------CELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIRE 320
            +       E   LQ L L  N +              +   +  
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 268 LILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTK 327
           L L H +L   V   L +L  +  LDLS+N L    P+      L   +      E    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 328 NIAYIYQGKVLSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLT---GSIPSTF 383
                   +       L L  N+L        + +  R+  LNL  N+L    G      
Sbjct: 61  VANLPRLQE-------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 384 SNLKYVESL 392
             L  V S+
Sbjct: 114 EMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSL 207
           L+L +  L+  +   L  L  +  + + +N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 208 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL---NGSISDWVDGLSQ 264
               +   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 265 LSHLI 269
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQ-LCELNQLQLLDLSNNNLHG 301
                     Q   L+L +N L+    IQ L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 73  QFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFV 132
           + L L++  LT  +  HL    + +  L LS+N L+    +    L  L+ LQ   S   
Sbjct: 1   RVLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ--ASDNA 54

Query: 133 GEIPQSLSKCSSLEGLYLNNNSL-SGKIPRWLGNLTRLQCIIMPNNHLEG 181
            E    ++    L+ L L NN L      + L +  RL  + +  N L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
           ++      +  +  LDLS+N L    P   A+ C+ +       ++          NL  
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALENVDGVANLPR 66

Query: 121 LKWLQLEGSRFVG-EIPQSLSKCSSLEGLYLNNNSLSG------KIPRWLGNLTRL 169
           L+ L L  +R       Q L  C  L  L L  NSL        ++   L +++ +
Sbjct: 67  LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 344 LDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS---------------------T 382
           L L+   L     L    L  +  L+LSHN L    P+                      
Sbjct: 3   LHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 383 FSNLKYVESLDLSNNKLNG-KIPHQLVELKTLEVFSVAYNNLSGE 426
            +NL  ++ L L NN+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 26/110 (23%), Positives = 34/110 (30%), Gaps = 4/110 (3%)

Query: 16  PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFL 75
            +     +  LD+S+N  R   P      L  L     S N           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDN--ALENVDGVANLPRLQEL 70

Query: 76  DLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ 125
            L NN L         V C  L  L L  N+L      +      L  + 
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 57/304 (18%), Positives = 91/304 (29%), Gaps = 20/304 (6%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCI---IMPNNHLEGPIPVEFCQL 190
            +P+       LE L  + NSL+ ++P    +L  L      +   + L   +       
Sbjct: 52  SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 107

Query: 191 DLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 250
           + L+ L    N+    +    +    K   L  ++               L  L      
Sbjct: 108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAI 167

Query: 251 LNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNT 310
              + S        LS   +   N   E   +L  L  L  +   NN L           
Sbjct: 168 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 227

Query: 311 ----TLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ 366
                 +    + E  +  T           LS L       N     I         ++
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 426
            LN+S+N L   +P+    L+    L  S N L  ++P     LK L    V YN L  E
Sbjct: 288 ELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-E 338

Query: 427 IPEW 430
            P+ 
Sbjct: 339 FPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 61/355 (17%), Positives = 102/355 (28%), Gaps = 55/355 (15%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
           S+P    +   L+ L  S N LT E+PE       +L+ L + NNNL+            
Sbjct: 52  SLPELPPH---LESLVASCNSLT-ELPELPQ----SLKSLLVDNNNLKALSDLPP----- 98

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
              L+  G            + SS   +   +N+   K+P    +L  +         L 
Sbjct: 99  --LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 240
               + F          +                +     L +      L      N   
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH 300
               DL  +    ++ D            L   ++   +   L EL        +++N  
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 301 GPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIG 360
             +     +                               L  L++S NKLI  +P    
Sbjct: 277 RSLCDLPPS-------------------------------LEELNVSNNKLIE-LPALPP 304

Query: 361 NLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEV 415
            L R   L  S N+L   +P    NLK    L +  N L  + P     ++ L +
Sbjct: 305 RLER---LIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 51  FNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGH 110
               +NA    I S       L+ L++SNN L  E+P         L  L  S N+L   
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-- 317

Query: 111 MFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNN 152
                    NLK L +E +    E P       S+E L +N+
Sbjct: 318 --EVPELPQNLKQLHVEYNPLR-EFPDIP---ESVEDLRMNS 353

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 27/232 (11%), Positives = 62/232 (26%), Gaps = 22/232 (9%)

Query: 165 NLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 224
            L     I    +++   +      LD +  L      ++ ++    +  ++  + L  N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 225 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLC 284
            +                                          I   +    ++     
Sbjct: 74  QITDLAPLKNLTKI---------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 285 ELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGL 344
                 L  L  +       S     T  +   I          +A + +      L+ L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK------LTTL 178

Query: 345 DLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSN 396
               NK+    PL   +L  +  ++L +N ++   P   +N   +  + L+N
Sbjct: 179 KADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 26/202 (12%), Positives = 51/202 (25%), Gaps = 20/202 (9%)

Query: 117 NLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPN 176
            L N   +    S     + Q+      +  L      ++      +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 177 NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF 236
           N +    P++         L  +      ++       ++         +          
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 237 N--------------CSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ 282
                                  LS      S    +  LS+L+ L    N +    P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 283 LCELNQLQLLDLSNNNLHGPIP 304
           L  L  L  + L NN +    P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 34/254 (13%), Positives = 66/254 (25%), Gaps = 43/254 (16%)

Query: 43  DVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLAL 102
             L +        + +  ++  +  ++  +  L      +T    E +     NL  L L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQ-YLNNLIGLEL 70

Query: 103 SNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 162
            +N +      +N        L     + V  I    S  +         +         
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 163 LGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLS 222
           L  L      I   + L G   +++                                   
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLS--------------------------------- 157

Query: 223 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQ 282
                         N S L TL    N+++      +  L  L  + L +N +    P  
Sbjct: 158 -IGNAQVSDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP-- 212

Query: 283 LCELNQLQLLDLSN 296
           L   + L ++ L+N
Sbjct: 213 LANTSNLFIVTLTN 226

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 357 LQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF 416
            Q  N  R + L+L    +   I +  + L   +++D S+N++          L+ L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 417 SVAYNNLSGEIPEW 430
            V  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 19/206 (9%), Positives = 47/206 (22%)

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
              L      +       F      +          ++     F+    +         N
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 253 GSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTL 312
               +     +  +   L  +N   +    + +++ LQ + L   +         ++   
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 313 HEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSH 372
              + +            +        L        N L           +    L++S 
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 373 NNLTGSIPSTFSNLKYVESLDLSNNK 398
             +         NLK + +    N K
Sbjct: 211 TRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 34/228 (14%), Positives = 75/228 (32%), Gaps = 11/228 (4%)

Query: 52  NNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHM 111
            + +  +   +P +         L      L        +      +     N+ L+   
Sbjct: 17  ESKVTEIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 112 FSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQC 171
                NL  L  +++E +  +  I     +        L +N+    +P      +  + 
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 172 IIMPNNHLEGPIPVEFCQLDLLQI---LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 228
           ++   +++          + L      L ++ N I       F+   + +++LS N    
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 229 QLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
           +L    F   S  V LD+S  R++   S  ++ L +L        NL+
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 5/231 (2%)

Query: 194 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 253
           ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 254 SISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLH 313
            I   V       H I                 N   L  L  +N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 314 EKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN 373
           +K  +  +       I       +      L L+ N +              +     +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 374 NLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 424
           NL       F        LD+S  +++    + L  LK L   S    NL 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKYVESLDLSNNKL 399
            SGL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 400 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 453
               P        L   ++++N L   +   T Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 1/147 (0%)

Query: 72  LQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF 131
              L  + +    +   HL            +  +LQ         L  L+ L +  S  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLD 191
               P +      L  L L+ N+L     + +  L+  + ++  N            + +
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 192 LLQILDISDNNISGSLPSCFHPLSIKQ 218
              +  + +  +          +    
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 1/134 (0%)

Query: 134 EIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQCIIMPNNHLEGPIPVEFCQLDL 192
           +    L    +L  LY+ N      +    L  L  L+ + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 252
           L  L++S N +          LS++++ LS N LH                  +   +L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 253 GSISDWVDGLSQLS 266
                 +  +   S
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 19/134 (14%), Positives = 33/134 (24%)

Query: 61  SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTN 120
                    + L  L + N      +      G   LR L +  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 121 LKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE 180
           L  L L  +       +++   S  E +   N        RWL          +P   L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 181 GPIPVEFCQLDLLQ 194
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 42/195 (21%)

Query: 237 NCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSN 296
             +  +  +L    +  +++   + L+ +  +I  +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 297 NNLHGPIP-----------------------------------SCFDNTTLHEKKQIREK 321
           N L    P                                       +         + +
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 322 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPS 381
             +   N                    +  I  I   +  LT++Q L LS N+++     
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LR 194

Query: 382 TFSNLKYVESLDLSN 396
             + LK ++ L+L +
Sbjct: 195 ALAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 288 QLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLS 347
             Q LDL        + +   +  L+ +  +        +N         +  L  L+LS
Sbjct: 23  SQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN---------IPELLSLNLS 73

Query: 348 CNKL--IGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPH 405
            N+L  +  +   +     ++ LNLS N L             +E L L  N L+     
Sbjct: 74  NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

Query: 406 Q 406
           Q
Sbjct: 134 Q 134

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 5/161 (3%)

Query: 117 NLTNLKWLQLEGSRF-VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMP 175
             T  + ++L G    + ++  +LS   + + L L+ N++  KI   L  +  L+ + + 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLG 78

Query: 176 NNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 235
            N            +           N   SL      ++++ +++S N +    +    
Sbjct: 79  RNL--IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 236 FNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLE 276
                L  L L+ N L     +          ++    NL+
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.92

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=9e-30  Score=242.76  Aligned_cols=259  Identities=35%  Similarity=0.583  Sum_probs=206.5

Q ss_pred             ccCeeecccCcCCC--CCCcccCCCCCCCeEEccC-CccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEE
Q 045598          144 SLEGLYLNNNSLSG--KIPRWLGNLTRLQCIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVH  220 (536)
Q Consensus       144 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  220 (536)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |++.+..|..+.++++|++|++++|++.+..+            
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~------------  118 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP------------  118 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc------------
Confidence            45666666666554  3556677777777777765 56666667777777777777777777664322            


Q ss_pred             ccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCC-CEEecCCCcC
Q 045598          221 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQL-QLLDLSNNNL  299 (536)
Q Consensus       221 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~  299 (536)
                                  ..+..+++|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       119 ------------~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         119 ------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ------------ccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                        225566778888888887777778888888888888888888888888877777765 7888888888


Q ss_pred             CCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCC
Q 045598          300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSI  379 (536)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  379 (536)
                      ++..+..+..                             .....++++.+...+..|..+..+++++.+++++|.+.+.+
T Consensus       187 ~~~~~~~~~~-----------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         187 TGKIPPTFAN-----------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             EEECCGGGGG-----------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             cccccccccc-----------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence            8777665543                             23456888888888889999999999999999999998655


Q ss_pred             cccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCCCCC
Q 045598          380 PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR  457 (536)
Q Consensus       380 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~~C~  457 (536)
                       ..+..+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|+. ..+++++.+++.||+.+|+.|++.|.
T Consensus       238 -~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             -GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             -cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccCCCCCHHHhCCCccccCCCCCCCC
Confidence             46888999999999999999999999999999999999999999999974 68899999999999999999998884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.2e-27  Score=233.23  Aligned_cols=320  Identities=24%  Similarity=0.315  Sum_probs=139.0

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEc
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQL  126 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  126 (536)
                      +|+.|+++++.++..  +.+..+++|++|++++|+++ .++.  ++++++|++|++++|.+.+..  .+.++++|+.|++
T Consensus        45 ~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~  117 (384)
T d2omza2          45 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  117 (384)
T ss_dssp             TCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            555555555555431  23445555555555555555 3432  245555555555555554322  2445555555555


Q ss_pred             cCCcCcccCCcCCCCCCccCeeecccCcCCCCCC-------------------cccCCCCCCCeEEccCCccccCCcccc
Q 045598          127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-------------------RWLGNLTRLQCIIMPNNHLEGPIPVEF  187 (536)
Q Consensus       127 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~  187 (536)
                      +++.+.+..+  ......+.......+.+.....                   ..+...+.........+...  ....+
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  193 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISVL  193 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCGGG
T ss_pred             cccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--ccccc
Confidence            5555443221  1222333343333333321111                   11222223333333333222  22334


Q ss_pred             cCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccE
Q 045598          188 CQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSH  267 (536)
Q Consensus       188 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  267 (536)
                      ..+++++.+++++|.+++..+ .....+|+.+++++|.+.+ ++  .+..+++|+.+++++|.+++..  .+..+++|+.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~  267 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLA--PLSGLTKLTE  267 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             ccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-cc--hhhcccccchhccccCccCCCC--cccccccCCE
Confidence            445555555555555543322 1223344444444444422 11  1344444455555544444322  1334444455


Q ss_pred             EEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEcc
Q 045598          268 LILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLS  347 (536)
Q Consensus       268 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  347 (536)
                      |+++++++++..  .+..++.++.++++.|.+.+..  .+                            ..++.++.|+++
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~----------------------------~~~~~l~~L~ls  315 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PI----------------------------SNLKNLTYLTLY  315 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GG----------------------------GGCTTCSEEECC
T ss_pred             eeccCcccCCCC--cccccccccccccccccccccc--cc----------------------------chhcccCeEECC
Confidence            555444444221  1334444444444444443211  01                            113445555555


Q ss_pred             CCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCC
Q 045598          348 CNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  421 (536)
Q Consensus       348 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  421 (536)
                      +|.+++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       316 ~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            55554322  14445555555555555542 11 34455555555555555543322  444555555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=6e-27  Score=230.03  Aligned_cols=337  Identities=23%  Similarity=0.288  Sum_probs=252.7

Q ss_pred             EccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcC
Q 045598           52 NNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRF  131 (536)
Q Consensus        52 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  131 (536)
                      .++.+.+++.+.  ...+.+|++|+++++.++ .++ .+ ..+++|++|++++|++++..  .+.++++|++|++++|.+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~-gl-~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i  100 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI  100 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Ccc-cc-ccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccc
Confidence            455566665443  356788999999999998 663 44 67999999999999998754  488999999999999999


Q ss_pred             cccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCc-------------------ccccCCCC
Q 045598          132 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIP-------------------VEFCQLDL  192 (536)
Q Consensus       132 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~l~~  192 (536)
                      .+..  .+.++++|+.|+++++.+.+..+  ......+.......+.+.....                   ..+.....
T Consensus       101 ~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (384)
T d2omza2         101 ADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT  176 (384)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTT
T ss_pred             cccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            8653  48899999999999998874433  3444566666655554432221                   12222333


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEccc
Q 045598          193 LQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGH  272 (536)
Q Consensus       193 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  272 (536)
                      ........+... ........++++.+.+++|.+.+..+   +..+++|++|++++|.+++.  ..+..+++|+.|++++
T Consensus       177 ~~~~~~~~~~~~-~~~~~~~l~~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  250 (384)
T d2omza2         177 LERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN  250 (384)
T ss_dssp             CCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             cccccccccccc-cccccccccccceeeccCCccCCCCc---ccccCCCCEEECCCCCCCCc--chhhcccccchhcccc
Confidence            333333333322 22223356788899999988865433   45678899999999988753  3577889999999999


Q ss_pred             ccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCc
Q 045598          273 NNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  352 (536)
Q Consensus       273 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  352 (536)
                      |.+++..  .+..+++|++|+++++.+++..+  +.                            .++.++.++++.|.+.
T Consensus       251 n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~----------------------------~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         251 NQISNLA--PLSGLTKLTELKLGANQISNISP--LA----------------------------GLTALTNLELNENQLE  298 (384)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT----------------------------TCTTCSEEECCSSCCS
T ss_pred             CccCCCC--cccccccCCEeeccCcccCCCCc--cc----------------------------cccccccccccccccc
Confidence            9988544  37788999999999988875432  21                            1567899999999987


Q ss_pred             CCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCcc
Q 045598          353 GPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTA  432 (536)
Q Consensus       353 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  432 (536)
                      +  ...+..+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|+.|++++|++++..|  +.
T Consensus       299 ~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~  370 (384)
T d2omza2         299 D--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA  370 (384)
T ss_dssp             C--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT
T ss_pred             c--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc
Confidence            5  335788899999999999999753  38899999999999999985 44 58999999999999999997665  66


Q ss_pred             ccccCCccccccC
Q 045598          433 QFATFNESSYEGN  445 (536)
Q Consensus       433 ~~~~l~~l~l~~n  445 (536)
                      .+++++.+++++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            8899999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1e-27  Score=228.39  Aligned_cols=251  Identities=29%  Similarity=0.477  Sum_probs=176.9

Q ss_pred             CCcEEEccCCCCcc--cCCccCCCCCCCCEEEccC-CcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCE
Q 045598           47 SLYAFNNSMNALDG--SIPSSFGNMKFLQFLDLSN-NHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKW  123 (536)
Q Consensus        47 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  123 (536)
                      +++.|+++++.+++  .+|.+++++++|++|+|++ |+++|.+|..+ +++++|++|+|++|++.+..+..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence            46666666666655  3556666666666666665 55666666655 46666666766666666666666666666777


Q ss_pred             EEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCC-CeEEccCCccccCCcccccCCCCCCEEEccCCc
Q 045598          124 LQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL-QCIIMPNNHLEGPIPVEFCQLDLLQILDISDNN  202 (536)
Q Consensus       124 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  202 (536)
                      +++++|.+....|..+.++++++.+++++|.+.+.+|..+..+..+ +.+.++.|++++..+..+..+.. ..++++.+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            7776666666666666666777777777776666666666666554 56666667666666666655543 356666666


Q ss_pred             CcccCCCCC-CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccc
Q 045598          203 ISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPI  281 (536)
Q Consensus       203 ~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  281 (536)
                      ..+..+... ...+++.+++.++.+.+.++.  +..+++|+.|++++|++++.+|.++..+++|++|+|++|++++.+|.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~--~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccc--cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            665555444 455677777777766555442  77789999999999999999999999999999999999999988885


Q ss_pred             cccCCCCCCEEecCCCc-CCCC
Q 045598          282 QLCELNQLQLLDLSNNN-LHGP  302 (536)
Q Consensus       282 ~~~~l~~L~~L~l~~n~-~~~~  302 (536)
                       +..+++|+.+++++|+ +.+.
T Consensus       287 -~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         287 -GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             -STTGGGSCGGGTCSSSEEEST
T ss_pred             -cccCCCCCHHHhCCCccccCC
Confidence             6788999999999997 4443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.3e-25  Score=211.21  Aligned_cols=205  Identities=22%  Similarity=0.267  Sum_probs=125.2

Q ss_pred             CCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeec
Q 045598           71 FLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYL  150 (536)
Q Consensus        71 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  150 (536)
                      .++.++.++..++ .+|..+   .+++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4455666666666 666544   245667777777666665556666677777777777766666666777777777777


Q ss_pred             ccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcc
Q 045598          151 NNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL  230 (536)
Q Consensus       151 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  230 (536)
                      ++|++.. +|..  ..+.++.|.+.+|.+....+..+.....+..++...+.....                      ..
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~  141 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  141 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------------CC
Confidence            7776663 3332  234667777777777666555666666666666655543211                      11


Q ss_pred             cccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598          231 KRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF  307 (536)
Q Consensus       231 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  307 (536)
                      ....+..+++|+.+++++|.+... +..  .+++|+.|++++|..+...+..|..++.++.|++++|.+.+..+..+
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             CccccccccccCccccccCCcccc-Ccc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence            122356667777777777776632 222  24567777777777666666666666666666666666654444333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.4e-27  Score=218.98  Aligned_cols=231  Identities=23%  Similarity=0.287  Sum_probs=172.9

Q ss_pred             ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcc-cccccccccccccCCCCCCEEec
Q 045598          216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILG-HNNLEGEVPIQLCELNQLQLLDL  294 (536)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l  294 (536)
                      ++.|++++|.+. .++...|.++++|++|++++|.+....+..+..++.++.+... .+.+....+..|.++++|++|++
T Consensus        34 ~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            444444444442 4455557777888888888888877666777777777777654 45555555667788888888888


Q ss_pred             CCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCcc
Q 045598          295 SNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNN  374 (536)
Q Consensus       295 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  374 (536)
                      ++|.+....+..+..                            ..+|+.+++++|.+++..+..|..+++|+.|++++|+
T Consensus       113 ~~n~~~~~~~~~~~~----------------------------~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_         113 DRCGLQELGPGLFRG----------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccccccccccch----------------------------hcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            888776555554443                            4578888888888887767778888888888888888


Q ss_pred             CCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCCC
Q 045598          375 LTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP  454 (536)
Q Consensus       375 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~  454 (536)
                      +++..+..|.++++|+.+++++|+++++.|..|..+++|+.|++++|++.+..+..+..+.+++.+++++|||.|+|+..
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            88777778888888888888888888777888888888888888888888777777777888888888888888888753


Q ss_pred             ----------------CCCCCCCCCcccCCCCcCccc
Q 045598          455 ----------------ICRSPATMSEASIGNERDDNL  475 (536)
Q Consensus       455 ----------------~C~~~~~~~~~~~~~~~~~~~  475 (536)
                                      .|..|...+++++.+....++
T Consensus       245 ~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         245 PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             HHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence                            588888888877777666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=7e-25  Score=207.81  Aligned_cols=251  Identities=22%  Similarity=0.258  Sum_probs=136.7

Q ss_pred             CcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEE
Q 045598           22 RLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLA  101 (536)
Q Consensus        22 ~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  101 (536)
                      ..+.+|.++.+++ ++|..++   +++++|++++|.++...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            4566777766666 6666554   36677777777766544456666777777777776666 55444445666666666


Q ss_pred             cccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcccc
Q 045598          102 LSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEG  181 (536)
Q Consensus       102 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  181 (536)
                      +++|+++.....   ....++.|.+.+|.+....+..+.....++.++...+...                      ...
T Consensus        86 l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~----------------------~~~  140 (305)
T d1xkua_          86 LSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK----------------------SSG  140 (305)
T ss_dssp             CCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC----------------------GGG
T ss_pred             ccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc----------------------ccC
Confidence            666666543322   1234555555555554433333334444444444333221                      112


Q ss_pred             CCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhC
Q 045598          182 PIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDG  261 (536)
Q Consensus       182 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  261 (536)
                      ..+..+..+++|+.+++++|.+......  ...+++.|++++|...+..+ ..|..++.+++|++++|.+.+..+.++.+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCCh-hHhhccccccccccccccccccccccccc
Confidence            2233445555566666655555422111  12334444444443332222 23566666666666666666655666666


Q ss_pred             CCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCcc
Q 045598          262 LSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSC  306 (536)
Q Consensus       262 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  306 (536)
                      +++|++|++++|.++ .+|..+..+++|++|++++|+++......
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhh
Confidence            666666666666666 44556666666666666666666443333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=200.20  Aligned_cols=183  Identities=27%  Similarity=0.258  Sum_probs=151.0

Q ss_pred             CCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccc
Q 045598          239 SSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQI  318 (536)
Q Consensus       239 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  318 (536)
                      +++++|+|++|.+++..+..|..+++|++|++++|.++. ++ .+..+++|++|++++|+++.. +..+..         
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~---------   98 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQT---------   98 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSC-CCCTTT---------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccccccccc-cccccc---------
Confidence            467888888888886666778888888888888888873 33 356788888888888887754 333332         


Q ss_pred             cceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCc
Q 045598          319 REKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNK  398 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  398 (536)
                                         ++.|+.|++++|.+....+..+..+.++++|++++|.+....+..+..+++|+.+++++|+
T Consensus        99 -------------------l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          99 -------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             -------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             -------------------ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence                               5678888888888887777888888999999999999998878888889999999999999


Q ss_pred             ccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598          399 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       399 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      +++..++.|..+++|+.|++++|+|+ .+|..+..+++++.+++.||||.|+|.+
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            99888888899999999999999998 6777777888999999999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=203.57  Aligned_cols=225  Identities=23%  Similarity=0.212  Sum_probs=155.1

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      ..++.++.+++ .+|..++.   .+++|+|++|.++...+.+|.++++|++|++++|.+. .++...+..+..++.+...
T Consensus        14 ~~v~c~~~~L~-~iP~~ip~---~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCCT---TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCCCCCC-ccCCCCCC---CCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence            45677777777 77876653   6788888888888766677888888888888888887 6666666677778877664


Q ss_pred             -cCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598          104 -NNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       104 -~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                       .+.++...+..+.++++|++|++++|.+....+..+....+|+.+++++|.+.+..+..|+.+++|++|++++|++...
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence             4556666666777777777777777776655556666667777777777777655555666666677777777766666


Q ss_pred             CcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCC
Q 045598          183 IPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGL  262 (536)
Q Consensus       183 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  262 (536)
                      .+.+|.++++|+.+++++|++++..+                        ..|..+++|++|++++|.+.+..+.+|..+
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~------------------------~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHP------------------------HAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECT------------------------TTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             chhhhccccccchhhhhhccccccCh------------------------hHhhhhhhcccccccccccccccccccccc
Confidence            66666666666666666666553322                        225566666666666666666666666666


Q ss_pred             CCccEEEcccccccc
Q 045598          263 SQLSHLILGHNNLEG  277 (536)
Q Consensus       263 ~~L~~L~L~~n~l~~  277 (536)
                      ++|++|++++|++..
T Consensus       225 ~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         225 RALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cccCEEEecCCCCCC
Confidence            666666666666653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-22  Score=184.02  Aligned_cols=181  Identities=21%  Similarity=0.169  Sum_probs=149.5

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL   97 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   97 (536)
                      .....+.+++.++++++ .+|.+++   +++++|+|++|.+++..+.+|.++++|++|+|++|+++ .++.  ++.+++|
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVL   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--ccccccc
Confidence            45567778899999998 7887765   47899999999998777788999999999999999988 7764  2578899


Q ss_pred             CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598           98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN  177 (536)
Q Consensus        98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  177 (536)
                      ++|++++|+++.. +..+.++++|++|+++++.+....+..+..+.+++.|++++|.+....+..+..+++++.+++++|
T Consensus        80 ~~L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            9999999988753 556778888999999988888777777888888888888888888766677778888888888888


Q ss_pred             ccccCCcccccCCCCCCEEEccCCcCccc
Q 045598          178 HLEGPIPVEFCQLDLLQILDISDNNISGS  206 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  206 (536)
                      ++++..+..|..+++|++|++++|+++..
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cccccCccccccccccceeecccCCCccc
Confidence            88877777788888888888888888743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=3.7e-18  Score=164.48  Aligned_cols=303  Identities=28%  Similarity=0.312  Sum_probs=155.6

Q ss_pred             CCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEc
Q 045598           47 SLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQL  126 (536)
Q Consensus        47 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  126 (536)
                      ++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..    ..+|++|++++|.++....  +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            4555555555554 23432   345555555555555 45432    2455555555555543211  1  134556666


Q ss_pred             cCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCccc
Q 045598          127 EGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGS  206 (536)
Q Consensus       127 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  206 (536)
                      ++|.+.. +|. +..+++|++|+++++.+.. .+.   ....+..+.+..+...  ....+..++.++.+.+++|.....
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccccc-ccc-hhhhccceeeccccccccc-ccc---ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            6665552 222 3455566666665555542 111   1234445555444332  223345555666666666655432


Q ss_pred             CCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCC
Q 045598          207 LPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCEL  286 (536)
Q Consensus       207 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  286 (536)
                      ....   ...+.+....+.+. .++.  +..++.|+.+++++|.... .+.   ...++..+.+.++.+.. .+.   ..
T Consensus       178 ~~~~---~~~~~l~~~~~~~~-~~~~--~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~-~~~---~~  243 (353)
T d1jl5a_         178 PDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE---LP  243 (353)
T ss_dssp             CCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC---CC
T ss_pred             cccc---cccccccccccccc-cccc--ccccccccccccccccccc-ccc---ccccccccccccccccc-ccc---cc
Confidence            2111   12233344333331 2222  5567788888888887653 222   34567778888777663 222   23


Q ss_pred             CCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCC
Q 045598          287 NQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQ  366 (536)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  366 (536)
                      +.+...++..+.+.+...-                                .......++..+.+.+    ....+++|+
T Consensus       244 ~~l~~~~~~~~~~~~l~~l--------------------------------~~~~~~~~~~~~~~~~----~~~~~~~L~  287 (353)
T d1jl5a_         244 QSLTFLDVSENIFSGLSEL--------------------------------PPNLYYLNASSNEIRS----LCDLPPSLE  287 (353)
T ss_dssp             TTCCEEECCSSCCSEESCC--------------------------------CTTCCEEECCSSCCSE----ECCCCTTCC
T ss_pred             ccccccccccccccccccc--------------------------------cchhcccccccCcccc----ccccCCCCC
Confidence            4566666666554321100                                1223334444444432    123356777


Q ss_pred             EEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCC
Q 045598          367 TLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE  429 (536)
Q Consensus       367 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  429 (536)
                      +|+|++|+++. +|.   .+++|+.|+|++|+|+ .+|.   .+++|+.|++++|+++ .+|.
T Consensus       288 ~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         288 ELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             EEECCCCccCc-ccc---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            77777777773 443   2467777777777776 3443   2456777777777776 3454

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=4.5e-18  Score=163.83  Aligned_cols=315  Identities=24%  Similarity=0.258  Sum_probs=222.6

Q ss_pred             CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEE
Q 045598           21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFL  100 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  100 (536)
                      .++++|||++++++ .+|.    .+++|++|++++|.++ .+|..   ..+|+.|++++|+++ .++.    -.+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccc
Confidence            46899999999998 7884    3579999999999998 56754   468999999999988 6663    23579999


Q ss_pred             EcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccc
Q 045598          101 ALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLE  180 (536)
Q Consensus       101 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  180 (536)
                      ++++|.+....  .+..+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+.++...
T Consensus       104 ~L~~n~l~~lp--~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         104 GVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccc--chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccc
Confidence            99999998653  357889999999999987633 22   2356677777665543  3345778899999999998876


Q ss_pred             cCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598          181 GPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD  260 (536)
Q Consensus       181 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  260 (536)
                      ....    .....+.+...++.+. ..+....+..++.+++++|.... +    .....++..+.+.++.+... +.   
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~-~----~~~~~~l~~~~~~~~~~~~~-~~---  241 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-L----PDLPPSLEALNVRDNYLTDL-PE---  241 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-C----CSCCTTCCEEECCSSCCSCC-CC---
T ss_pred             cccc----cccccccccccccccc-ccccccccccccccccccccccc-c----cccccccccccccccccccc-cc---
Confidence            3321    2234466666666554 44555577899999999987642 2    23456788899998887643 22   


Q ss_pred             CCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccc
Q 045598          261 GLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSL  340 (536)
Q Consensus       261 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (536)
                      ..+.+...++..+.+.+. ..   -.......++..+.+.+...                                .+++
T Consensus       242 ~~~~l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~~~~~~~~--------------------------------~~~~  285 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLCD--------------------------------LPPS  285 (353)
T ss_dssp             CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEECC--------------------------------CCTT
T ss_pred             cccccccccccccccccc-cc---ccchhcccccccCccccccc--------------------------------cCCC
Confidence            245667777776665531 11   11345566676666543211                                1578


Q ss_pred             cceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEcc
Q 045598          341 LSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVA  419 (536)
Q Consensus       341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  419 (536)
                      |++|++++|.++ .+|.   .+++|+.|+|++|+++. +|+   .+++|++|++++|+++ .+|+.   ..+|+.|.+.
T Consensus       286 L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         286 LEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            999999999988 4554   36799999999999984 554   3568999999999998 55543   2457777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8e-22  Score=197.72  Aligned_cols=383  Identities=21%  Similarity=0.125  Sum_probs=228.2

Q ss_pred             CCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcc----cCCccCCCCCCCCEEEccCCcCccccchhHhh----
Q 045598           21 KRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDG----SIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAV----   92 (536)
Q Consensus        21 ~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----   92 (536)
                      ++|+.||++++++++..-..+...+++++.|+|++|.++.    .++.++..+++|++|||++|.+++..-..+..    
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3688999999999865445566668899999999998874    33455778899999999999886322122222    


Q ss_pred             CCCCCCEEEcccCccCccC----CccccCCCCCCEEEccCCcCcccCCcC----CC-CCCccCeeecccCcCCCCC----
Q 045598           93 GCVNLRFLALSNNNLQGHM----FSRNFNLTNLKWLQLEGSRFVGEIPQS----LS-KCSSLEGLYLNNNSLSGKI----  159 (536)
Q Consensus        93 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~----  159 (536)
                      ...+|++|++++|.++...    ...+..+++|++|++++|.+.......    +. ..............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            2357999999999887543    345667889999999998876421111    11 1112233333322221100    


Q ss_pred             CcccCCCCCCCeEEccCCccccCCc----ccc-cCCCCCCEEEccCCcCcccCC-----CCCCCCCccEEEccCCCCCCc
Q 045598          160 PRWLGNLTRLQCIIMPNNHLEGPIP----VEF-CQLDLLQILDISDNNISGSLP-----SCFHPLSIKQVHLSKNMLHGQ  229 (536)
Q Consensus       160 ~~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~  229 (536)
                      ...+.....++.+.++++.......    ..+ ........+.+.++.+.....     .......++.+.+.+|.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            0122344667777777765442110    111 122345667766665432110     011345677777777765321


Q ss_pred             ----ccccccCCCCCccEEEccCCcCCCcc----chhhhCCCCccEEEcccccccccccccc-----cCCCCCCEEecCC
Q 045598          230 ----LKRGTFFNCSSLVTLDLSYNRLNGSI----SDWVDGLSQLSHLILGHNNLEGEVPIQL-----CELNQLQLLDLSN  296 (536)
Q Consensus       230 ----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~  296 (536)
                          ...........++.+++++|.+....    ...+...+.++.+++++|.++......+     ...+.|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                11222445677888888888776332    2234557788888888888764332221     2345788888888


Q ss_pred             CcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCC----ccccc-CCCCCCEEeCC
Q 045598          297 NNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPI----PLQIG-NLTRIQTLNLS  371 (536)
Q Consensus       297 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~L~  371 (536)
                      |.++......+....                        ...++|++|++++|.+.+..    +..+. ..+.|++|+|+
T Consensus       322 ~~l~~~~~~~l~~~~------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         322 CSFTAACCSHFSSVL------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             SCCBGGGHHHHHHHH------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cchhhhhhhhccccc------------------------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence            876543222221100                        11457888888888876432    22332 45678888888


Q ss_pred             CccCCCC----CcccccCCCCCCEEeCCCCcccccCchhh----h-CCCCCCEEEccCCcCcccC
Q 045598          372 HNNLTGS----IPSTFSNLKYVESLDLSNNKLNGKIPHQL----V-ELKTLEVFSVAYNNLSGEI  427 (536)
Q Consensus       372 ~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~l~~N~l~~~~  427 (536)
                      +|.++..    +.+.+..+++|++|+|++|+++......+    . +...|+.|++.+|.+....
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            8888742    33456667888888888888875433332    2 3346888888888877543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=6e-19  Score=153.93  Aligned_cols=137  Identities=22%  Similarity=0.331  Sum_probs=123.4

Q ss_pred             ccccceEEccCCcCcC-CCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          338 LSLLSGLDLSCNKLIG-PIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       338 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      ++.+++|+|++|.+++ ..+..|.++++|+.|+|++|.+.+..++.|..+++|++|+|++|+++.+.+++|.++++|+.|
T Consensus        28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence            4679999999999986 456778999999999999999999999999999999999999999998889999999999999


Q ss_pred             EccCCcCcccCCCCccccccCCccccccCcCCCCCCCC----------------CCCCCCCCCcccCCCCcCcc
Q 045598          417 SVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN  474 (536)
Q Consensus       417 ~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~  474 (536)
                      ++++|+|++..+.++..+++++.+++.+|||.|+|+..                .|..|...++..+......+
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred             ccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhh
Confidence            99999999999999999999999999999999999754                58888888877666655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8e-19  Score=159.64  Aligned_cols=219  Identities=19%  Similarity=0.194  Sum_probs=119.7

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      +.++.++.+++ .+|..++   ++++.|++++|.++...+.+|.++++|++|++++|.+...++...|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777776776 6776554   3677777777777755555677777777777777776645555555666777776655


Q ss_pred             c-CccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccC
Q 045598          104 N-NNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGP  182 (536)
Q Consensus       104 ~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  182 (536)
                      . |.+....+..+.++++|++++++++.+....+  +..+.+                     +..+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~---------------------l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHS---------------------LQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTCB---------------------SSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--cccccc---------------------ccccccccccccccccc
Confidence            3 45555555556666666666666665543221  111112                     22222223333333333


Q ss_pred             CcccccCCC-CCCEEEccCCcCcccCCCCCCCCCccEEE-ccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhh
Q 045598          183 IPVEFCQLD-LLQILDISDNNISGSLPSCFHPLSIKQVH-LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVD  260 (536)
Q Consensus       183 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  260 (536)
                      .+..|.+++ .++.+++++|+++......+....++++. +.+|.+ ..++...|.++++|++|++++|+++...+..|.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l-~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC-CCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhcccccccccc-ccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            333343332 45566666666655444444444444333 233333 244444466666666666666666644444455


Q ss_pred             CCCCccEEEc
Q 045598          261 GLSQLSHLIL  270 (536)
Q Consensus       261 ~l~~L~~L~L  270 (536)
                      ++++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            4444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.3e-18  Score=152.95  Aligned_cols=203  Identities=20%  Similarity=0.271  Sum_probs=120.3

Q ss_pred             eecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCC
Q 045598          148 LYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH  227 (536)
Q Consensus       148 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  227 (536)
                      ++++.+++.+.  ..++.+.+|++|++.+|.++..  ..+..+++|+.|++++|.+.+.                     
T Consensus        24 ~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~---------------------   78 (227)
T d1h6ua2          24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL---------------------   78 (227)
T ss_dssp             HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC---------------------
T ss_pred             HHhCCCCcCCc--CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecc---------------------
Confidence            34444444432  1234455666666666665533  2355566666666666555421                     


Q ss_pred             CcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccc
Q 045598          228 GQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCF  307 (536)
Q Consensus       228 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  307 (536)
                         .+  +..+++++.+++++|.++..  ..+..+++|+.++++++...+.  ..+...+.++.+.++++.+....+  +
T Consensus        79 ---~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~  147 (227)
T d1h6ua2          79 ---AP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L  147 (227)
T ss_dssp             ---GG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             ---cc--cccccccccccccccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--h
Confidence               11  45556666666666665532  2355566666666666655432  224455666777776665543221  1


Q ss_pred             cccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCC
Q 045598          308 DNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK  387 (536)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  387 (536)
                      .                            ..++|++|++++|.+.+..  .++++++|++|++++|++++.  ..+.+++
T Consensus       148 ~----------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~  195 (227)
T d1h6ua2         148 A----------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLP  195 (227)
T ss_dssp             G----------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred             c----------------------------cccccccccccccccccch--hhcccccceecccCCCccCCC--hhhcCCC
Confidence            1                            1456777777777665332  367788888888888888753  2377788


Q ss_pred             CCCEEeCCCCcccccCchhhhCCCCCCEEEccC
Q 045598          388 YVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY  420 (536)
Q Consensus       388 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  420 (536)
                      +|++|+|++|+++++.|  +.++++|+.|++++
T Consensus       196 ~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            88888888888875432  67888888888763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.8e-18  Score=150.79  Aligned_cols=177  Identities=23%  Similarity=0.254  Sum_probs=133.3

Q ss_pred             ccEEEccCCcCCCccchhhhCCCCccEEEcccccccc-cccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcccc
Q 045598          241 LVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIR  319 (536)
Q Consensus       241 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  319 (536)
                      .+.++.+++.++ .+|..+  .+++++|+|++|+++. ..+..|..+++|+.|++++|.+....+..+..          
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            346778888777 344433  2578888888888875 34556788888888888888888777776655          


Q ss_pred             ceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcc
Q 045598          320 EKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKL  399 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  399 (536)
                                        ++.|++|++++|++....+.+|.++++|++|+|++|+++++.+++|..+++|++|+|++|.+
T Consensus        77 ------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          77 ------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ------------------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence                              56788888888888887888899999999999999999988888899999999999999988


Q ss_pred             cccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCccccccCcCCCCCC
Q 045598          400 NGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  452 (536)
Q Consensus       400 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~  452 (536)
                      ....... .-...++.+.+..+.+++..|..   +..++..++..|.+.|.++
T Consensus       139 ~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         139 NCNCHLA-WFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC
T ss_pred             ccccchH-HHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCC
Confidence            7433221 11123555667788888877764   4455667888898888754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.6e-21  Score=191.48  Aligned_cols=379  Identities=16%  Similarity=0.104  Sum_probs=240.6

Q ss_pred             CCCcEEEccCCCCcccC-CccCCCCCCCCEEEccCCcCccc----cchhHhhCCCCCCEEEcccCccCccCC----cccc
Q 045598           46 PSLYAFNNSMNALDGSI-PSSFGNMKFLQFLDLSNNHLTGE----IPEHLAVGCVNLRFLALSNNNLQGHMF----SRNF  116 (536)
Q Consensus        46 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~  116 (536)
                      ++|+.||++.+++++.. ...+..++++++|+|++|.++..    +... +..+++|++|+|++|.++....    ..+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~-L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHH-HhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36899999999998632 33466789999999999988732    2222 3678999999999998864322    2222


Q ss_pred             -CCCCCCEEEccCCcCccc----CCcCCCCCCccCeeecccCcCCCCCCccc----C-CCCCCCeEEccCCccccCC---
Q 045598          117 -NLTNLKWLQLEGSRFVGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWL----G-NLTRLQCIIMPNNHLEGPI---  183 (536)
Q Consensus       117 -~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~-~l~~L~~L~l~~n~~~~~~---  183 (536)
                       ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....+    . ..............+....   
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence             235799999999988743    34567888999999999998753222111    1 1222333444333332111   


Q ss_pred             -cccccCCCCCCEEEccCCcCcccCCCC----C--CCCCccEEEccCCCCCCcc---cccccCCCCCccEEEccCCcCCC
Q 045598          184 -PVEFCQLDLLQILDISDNNISGSLPSC----F--HPLSIKQVHLSKNMLHGQL---KRGTFFNCSSLVTLDLSYNRLNG  253 (536)
Q Consensus       184 -~~~~~~l~~L~~L~l~~n~~~~~~~~~----~--~~~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~l~~  253 (536)
                       ...+.....++.+.++++.........    .  .......+.+..+.+...-   ....+...+.++.+++.+|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence             122345677888888887654221000    0  2234556777666553211   11123456788999999887643


Q ss_pred             c-----cchhhhCCCCccEEEcccccccccc----cccccCCCCCCEEecCCCcCCCCCCccccccchhhhccccceeEE
Q 045598          254 S-----ISDWVDGLSQLSHLILGHNNLEGEV----PIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQIREKFEF  324 (536)
Q Consensus       254 ~-----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (536)
                      .     ..........++.+++++|.+....    ...+...+.++.+++++|.++......+...              
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~--------------  306 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET--------------  306 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH--------------
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc--------------
Confidence            2     2233344678999999999876432    2345567889999999988763222111100              


Q ss_pred             eeccceeeeccccccccceEEccCCcCcCCCcc----cccCCCCCCEEeCCCccCCCC----Ccccc-cCCCCCCEEeCC
Q 045598          325 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPL----QIGNLTRIQTLNLSHNNLTGS----IPSTF-SNLKYVESLDLS  395 (536)
Q Consensus       325 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~-~~l~~L~~L~L~  395 (536)
                               .......|+.+++++|.++.....    .+...++|++|+|++|++++.    +.+.+ ...+.|++|+|+
T Consensus       307 ---------l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls  377 (460)
T d1z7xw1         307 ---------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  377 (460)
T ss_dssp             ---------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ---------ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECC
Confidence                     001135799999999988765433    334567999999999998742    22333 346789999999


Q ss_pred             CCccccc----CchhhhCCCCCCEEEccCCcCcccCCCCcc-----ccccCCccccccCcCC
Q 045598          396 NNKLNGK----IPHQLVELKTLEVFSVAYNNLSGEIPEWTA-----QFATFNESSYEGNTFL  448 (536)
Q Consensus       396 ~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~~l~~l~l~~n~~~  448 (536)
                      +|+++..    +.+.+..+++|++|++++|+++......+.     ....++.+.+.+|.+.
T Consensus       378 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            9999753    344566789999999999999853222111     1235777777777654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=8.7e-17  Score=144.23  Aligned_cols=188  Identities=22%  Similarity=0.258  Sum_probs=103.1

Q ss_pred             CCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccC
Q 045598           67 GNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLE  146 (536)
Q Consensus        67 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  146 (536)
                      ..+.+|+.|++.+|.++ .++ .+ ..+++|++|++++|.++...  .+..+++|+++++++|.++..  ..+.++++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccc
Confidence            34455555555555555 342 22 44555555555555554322  245555556666555554422  2355566666


Q ss_pred             eeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCC
Q 045598          147 GLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML  226 (536)
Q Consensus       147 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~  226 (536)
                      .++++++...+.  ..+...+.++.+.++.+.+...  ..+..+++|+.|++++|.+...                    
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--------------------  166 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--------------------  166 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--------------------
Confidence            666665554422  2344556666666666665432  2345566677777766655421                    


Q ss_pred             CCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecC
Q 045598          227 HGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLS  295 (536)
Q Consensus       227 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  295 (536)
                          .  .+..+++|++|++++|++++. + .+..+++|++|++++|++++..  .+..+++|+.|+++
T Consensus       167 ----~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         167 ----T--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             ----G--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ----h--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence                0  145566666666666666542 2 2556666777777777666332  25666777777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.4e-17  Score=147.91  Aligned_cols=198  Identities=15%  Similarity=0.086  Sum_probs=100.7

Q ss_pred             ccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCcc-chhhhCCCCccEEEccc-ccccccccccccCCCCCCEEe
Q 045598          216 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI-SDWVDGLSQLSHLILGH-NNLEGEVPIQLCELNQLQLLD  293 (536)
Q Consensus       216 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  293 (536)
                      +++|++++|.+. .++..+|.++++|++|++++|.+.+.+ +.+|..+++++++.+.. +.+....+..|.++++|+.++
T Consensus        31 l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          31 AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            333333333332 344444666666666666666655432 34455666666666543 455545555566666666666


Q ss_pred             cCCCcCCCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCC-CCCEEeCCC
Q 045598          294 LSNNNLHGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLT-RIQTLNLSH  372 (536)
Q Consensus       294 l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~  372 (536)
                      +++|.+....+..+..                           .+..+..+...++.+....+..|.+++ .++.|++++
T Consensus       110 l~~~~l~~~~~~~~~~---------------------------~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIH---------------------------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EESCCCCSCCCCTTTC---------------------------BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cchhhhcccccccccc---------------------------cccccccccccccccccccccccccccccceeeeccc
Confidence            6666655332221110                           022333344444444444444454443 556666666


Q ss_pred             ccCCCCCcccccCCCCCCE-EeCCCCcccccCchhhhCCCCCCEEEccCCcCcccCCCCccccccCCcccc
Q 045598          373 NNLTGSIPSTFSNLKYVES-LDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSY  442 (536)
Q Consensus       373 n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~l~l  442 (536)
                      |++++..+..+. .+++++ +++++|+++.+.++.|.++++|+.|++++|+++...+..+..++.++.+++
T Consensus       163 n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         163 NGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            666643333333 333333 345555666444455666666666666666666444444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=137.69  Aligned_cols=147  Identities=26%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             CCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCccCccCCccccCCCCCCEEE
Q 045598           46 PSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNNLQGHMFSRNFNLTNLKWLQ  125 (536)
Q Consensus        46 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  125 (536)
                      ++++.|+++++.++..  ..+..+++|++|++++|+++ .++.  ++++++|++|++++|.+....  .+.++++|+.|+
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCccccccccccccccccc--cccccccccccc
Confidence            3555666665555431  23555556666666666555 3332  245556666666655554322  345556666666


Q ss_pred             ccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCcccccCCCCCCEEEccCCcCcc
Q 045598          126 LEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG  205 (536)
Q Consensus       126 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  205 (536)
                      ++++.....  ..+.++++|+.|++++|.+.. . ..+..+++|++|++.+|++++..  .+.++++|+.|++++|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC
Confidence            655554422  234555666666666665542 2 23555566666666666555332  35556666666666665553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=6.3e-16  Score=136.45  Aligned_cols=162  Identities=25%  Similarity=0.314  Sum_probs=90.6

Q ss_pred             EccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcccCc
Q 045598           27 DISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALSNNN  106 (536)
Q Consensus        27 ~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  106 (536)
                      .++.+.+.+.++..-   +.+|+.|+++++.+++.  ..+..+++|++|++++|+++ .++.  ++.+++|++|++++|+
T Consensus        30 ~l~~~~~~~~~~~~~---L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENK  101 (210)
T ss_dssp             HTTCSCTTSEECHHH---HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC
T ss_pred             HhCcCccCCccCHHH---hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccc
Confidence            444444544444322   23566666666666542  23566666666666666666 4442  2456666666666666


Q ss_pred             cCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCccccCCccc
Q 045598          107 LQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHLEGPIPVE  186 (536)
Q Consensus       107 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  186 (536)
                      ++...  .+..+++|+.|++++|.+...  ..+..+++++.+++++|.+.+  +..+..+++|+++++++|++.+..  .
T Consensus       102 i~~l~--~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~  173 (210)
T d1h6ta2         102 VKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--P  173 (210)
T ss_dssp             CCCGG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--G
T ss_pred             ccccc--ccccccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc--c
Confidence            65432  355666666666666655422  345556666666666666542  223455566666666666665332  2


Q ss_pred             ccCCCCCCEEEccCCcCc
Q 045598          187 FCQLDLLQILDISDNNIS  204 (536)
Q Consensus       187 ~~~l~~L~~L~l~~n~~~  204 (536)
                      +.++++|++|++++|+++
T Consensus       174 l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCCEEECCCCCCC
Confidence            555666666666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.6e-16  Score=138.95  Aligned_cols=167  Identities=22%  Similarity=0.328  Sum_probs=139.7

Q ss_pred             CCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCC
Q 045598           18 HSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNL   97 (536)
Q Consensus        18 ~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L   97 (536)
                      ..+.+|++|+++++.++ .++. + +.+++|+.|++++|.+++..  .++++++|++|++++|+++ .++.  +..+++|
T Consensus        43 ~~L~~L~~L~l~~~~i~-~l~~-l-~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L  114 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS--LKDLKKL  114 (210)
T ss_dssp             HHHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred             HHhcCccEEECcCCCCC-Cchh-H-hhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc--ccccccc
Confidence            34678999999999998 4442 3 45899999999999998643  4789999999999999998 6763  4689999


Q ss_pred             CEEEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCC
Q 045598           98 RFLALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNN  177 (536)
Q Consensus        98 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  177 (536)
                      +.|++++|.+..  ...+..+++++.+++++|.+.+.  ..+..+++|+.+++++|.+.+. + .++++++|++|++++|
T Consensus       115 ~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         115 KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             cccccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEECCCC
Confidence            999999998864  34678899999999999998743  4577899999999999999853 3 4889999999999999


Q ss_pred             ccccCCcccccCCCCCCEEEccC
Q 045598          178 HLEGPIPVEFCQLDLLQILDISD  200 (536)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~L~l~~  200 (536)
                      ++++. + .+.++++|+.|++++
T Consensus       189 ~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 HISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             CCCCC-h-hhcCCCCCCEEEccC
Confidence            99854 3 689999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.1e-15  Score=131.93  Aligned_cols=147  Identities=26%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             CCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           20 HKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        20 ~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      ++++++|++++++++ .++ .+ +.+++|++|++++|.+++..  .++++++|++|++++|.+. .++.  +.++++|++
T Consensus        39 l~~l~~L~l~~~~i~-~l~-~l-~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~  110 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTG  110 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             hcCCCEEECCCCCCC-Ccc-cc-ccCCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--ccccccccc
Confidence            344455555554444 222 11 22445555555555444322  1444555555555554444 3332  234445555


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCCcCCCCCCccCeeecccCcCCCCCCcccCCCCCCCeEEccCCcc
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQCIIMPNNHL  179 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  179 (536)
                      |+++++.....  ..+..+++|+.|++++|.+...  +.+..+++|+.|++.+|.+.+.  ..++++++|++|++++|++
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            55544444321  2234444555555555444321  2344444555555555544421  1244445555555555544


Q ss_pred             c
Q 045598          180 E  180 (536)
Q Consensus       180 ~  180 (536)
                      +
T Consensus       185 ~  185 (199)
T d2omxa2         185 S  185 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-15  Score=125.36  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=98.0

Q ss_pred             cccceEEccCCcCcCCCcccccCCCCCCEEeCCCc-cCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEE
Q 045598          339 SLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHN-NLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFS  417 (536)
Q Consensus       339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  417 (536)
                      ...+.++.+++.+. ..|..+..+++|++|++++| .++.+.++.|.++++|+.|+|++|+|+.+.+.+|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34567888888877 46777889999999999876 58877788999999999999999999988899999999999999


Q ss_pred             ccCCcCcccCCCCccccccCCccccccCcCCCCCCC
Q 045598          418 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  453 (536)
Q Consensus       418 l~~N~l~~~~~~~~~~~~~l~~l~l~~n~~~c~~~l  453 (536)
                      +++|+++...+..+ ....++.+++.+|||.|+|.+
T Consensus        87 Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          87 LSFNALESLSWKTV-QGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CCSSCCSCCCSTTT-CSCCCCEEECCSSCCCCCGGG
T ss_pred             ccCCCCcccChhhh-ccccccccccCCCcccCCchH
Confidence            99999996666655 445799999999999999965

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.4e-16  Score=143.22  Aligned_cols=254  Identities=19%  Similarity=0.202  Sum_probs=154.5

Q ss_pred             CEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCEEEcc
Q 045598           24 GMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRFLALS  103 (536)
Q Consensus        24 ~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  103 (536)
                      +++|++++.+.......+..  ..+..+.++...+.... .......+|++||++++.+++.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            47888888776444444443  35667777665544322 2334556899999999887755455667888999999999


Q ss_pred             cCccCccCCccccCCCCCCEEEccCC-cCccc-CCcCCCCCCccCeeecccCc-CCCC-CCcccC-CCCCCCeEEccCCc
Q 045598          104 NNNLQGHMFSRNFNLTNLKWLQLEGS-RFVGE-IPQSLSKCSSLEGLYLNNNS-LSGK-IPRWLG-NLTRLQCIIMPNNH  178 (536)
Q Consensus       104 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~-~l~~L~~L~l~~n~  178 (536)
                      ++.++......+..+++|++|+++++ .+++. +......+++|++|++++|. +++. ....+. ..++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99887766677778889999999885 34321 11223457788888888763 3211 111122 23678888877652


Q ss_pred             --cccC-CcccccCCCCCCEEEccCCc-CcccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCC-cCCC
Q 045598          179 --LEGP-IPVEFCQLDLLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNG  253 (536)
Q Consensus       179 --~~~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~  253 (536)
                        ++.. ....+..+++|++|++++|. +++                       .... .+..+++|++|++++| .+++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-----------------------~~~~-~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----------------------DCFQ-EFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----------------------GGGG-GGGGCTTCCEEECTTCTTCCG
T ss_pred             cccccccccccccccccccccccccccCCCc-----------------------hhhh-hhcccCcCCEEECCCCCCCCh
Confidence              2211 11223456677777776653 221                       1111 2556788888888885 5665


Q ss_pred             ccchhhhCCCCccEEEcccccccc-cccccccCCCCCCEEecCCCcCCCCCCcccc
Q 045598          254 SISDWVDGLSQLSHLILGHNNLEG-EVPIQLCELNQLQLLDLSNNNLHGPIPSCFD  308 (536)
Q Consensus       254 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  308 (536)
                      .....+..+++|+.|+++++ ++. ........+|+|+   +..++++...++.++
T Consensus       216 ~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~  267 (284)
T d2astb2         216 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG  267 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred             HHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence            55556777888888888877 332 2222223455544   456666655555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.8e-16  Score=145.71  Aligned_cols=183  Identities=22%  Similarity=0.253  Sum_probs=107.8

Q ss_pred             CCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccc-cccccc-cccccCCCCC
Q 045598          212 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHN-NLEGEV-PIQLCELNQL  289 (536)
Q Consensus       212 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L  289 (536)
                      ....|++|+++++.+.+......+..+++|++|+++++.+++..+..+..+++|++|++++| .+++.. ......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            33455555555554433332333667778888888877777666666777777888888775 344221 2224457778


Q ss_pred             CEEecCCCc-CCCCCC-ccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCc--CcCC-CcccccCCCC
Q 045598          290 QLLDLSNNN-LHGPIP-SCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNK--LIGP-IPLQIGNLTR  364 (536)
Q Consensus       290 ~~L~l~~n~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~-~~~~~~~l~~  364 (536)
                      ++|++++|. +++... ..+.                           ...+.|+.|+++++.  +++. +......+++
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~---------------------------~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~  176 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVA---------------------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  176 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHH---------------------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             cccccccccccccccchhhhc---------------------------ccccccchhhhccccccccccccccccccccc
Confidence            888887753 221000 0000                           013567777777652  3322 1222345677


Q ss_pred             CCEEeCCCcc-CCCCCcccccCCCCCCEEeCCCC-cccccCchhhhCCCCCCEEEccCC
Q 045598          365 IQTLNLSHNN-LTGSIPSTFSNLKYVESLDLSNN-KLNGKIPHQLVELKTLEVFSVAYN  421 (536)
Q Consensus       365 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  421 (536)
                      |++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|++++|
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7777777763 55555566677777777777775 566555556677777777777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.6e-15  Score=123.85  Aligned_cols=129  Identities=21%  Similarity=0.165  Sum_probs=95.4

Q ss_pred             CcCCCCCcCEEEccCCcCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCC
Q 045598           16 PIHSHKRLGMLDISNNNFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCV   95 (536)
Q Consensus        16 ~~~~~~~L~~L~ls~~~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~   95 (536)
                      .+.+..++++|+|++|+++ .+|. ++..+++|+.|++++|.++..  ..|..+++|++|++++|+++ .++..++..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccc
Confidence            3567788999999999988 6664 445578899999999988854  34888899999999999988 77777767788


Q ss_pred             CCCEEEcccCccCccCC-ccccCCCCCCEEEccCCcCcccCC---cCCCCCCccCeee
Q 045598           96 NLRFLALSNNNLQGHMF-SRNFNLTNLKWLQLEGSRFVGEIP---QSLSKCSSLEGLY  149 (536)
Q Consensus        96 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~  149 (536)
                      +|++|++++|.++.... ..+..+++|++|++++|.+.....   ..+..+++|+.||
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            89999998888875432 456677777777777777653321   1345556666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=121.50  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=29.6

Q ss_pred             cCCCCCccEEEccCCcCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCC
Q 045598          235 FFNCSSLVTLDLSYNRLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLH  300 (536)
Q Consensus       235 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  300 (536)
                      |.++.++++|++++|+|+.. +..+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC
T ss_pred             ccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc
Confidence            34444555555555555532 3334445555555555555542 21 2444444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-13  Score=109.68  Aligned_cols=15  Identities=27%  Similarity=0.321  Sum_probs=5.6

Q ss_pred             CCCCcCEEEccCCcC
Q 045598           19 SHKRLGMLDISNNNF   33 (536)
Q Consensus        19 ~~~~L~~L~ls~~~~   33 (536)
                      .+++|++|++++|.+
T Consensus        18 ~l~~L~~L~ls~N~l   32 (124)
T d1dcea3          18 QLLLVTHLDLSHNRL   32 (124)
T ss_dssp             GGTTCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCcc
Confidence            333333333333333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=4.6e-13  Score=106.36  Aligned_cols=103  Identities=22%  Similarity=0.304  Sum_probs=82.4

Q ss_pred             ceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCC
Q 045598          342 SGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN  421 (536)
Q Consensus       342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  421 (536)
                      +.|++++|+++.. + .++.+++|++|++++|+++ .+|+.+..+++|+.|++++|++++. | .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            4688999998843 3 4788899999999999998 4566788899999999999999844 4 4788999999999999


Q ss_pred             cCcccCC-CCccccccCCccccccCcCCC
Q 045598          422 NLSGEIP-EWTAQFATFNESSYEGNTFLC  449 (536)
Q Consensus       422 ~l~~~~~-~~~~~~~~l~~l~l~~n~~~c  449 (536)
                      +++.... ..+..+++++.++++||+...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9886432 456677888899999998644

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=3.9e-14  Score=135.31  Aligned_cols=244  Identities=16%  Similarity=0.151  Sum_probs=125.8

Q ss_pred             CCCCCCccCeeecccCcCCCCC----CcccCCCCCCCeEEccCCccccC----------CcccccCCCCCCEEEccCCcC
Q 045598          138 SLSKCSSLEGLYLNNNSLSGKI----PRWLGNLTRLQCIIMPNNHLEGP----------IPVEFCQLDLLQILDISDNNI  203 (536)
Q Consensus       138 ~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----------~~~~~~~l~~L~~L~l~~n~~  203 (536)
                      .+.+..+++.|++++|.+....    ...+...++|+.++++++.....          ....+...++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3455667777777777664322    22345567777777766543211          112234455666666666655


Q ss_pred             cccCCCCCCCCCccEEEccCCCCCCcccccccCCCCCccEEEccCCcCCCccch-------------hhhCCCCccEEEc
Q 045598          204 SGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSISD-------------WVDGLSQLSHLIL  270 (536)
Q Consensus       204 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~L  270 (536)
                      ......                   .+.. .+..+++|++|++++|.+......             .....+.|+.+.+
T Consensus       106 ~~~~~~-------------------~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l  165 (344)
T d2ca6a1         106 GPTAQE-------------------PLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  165 (344)
T ss_dssp             CTTTHH-------------------HHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             cccccc-------------------chhh-hhcccccchheecccccccccccccccccccccccccccccCcccceeec
Confidence            422110                   0111 133445666666666654321100             0123456666666


Q ss_pred             cccccccc----ccccccCCCCCCEEecCCCcCCCCCCcc-ccccchhhhccccceeEEeeccceeeeccccccccceEE
Q 045598          271 GHNNLEGE----VPIQLCELNQLQLLDLSNNNLHGPIPSC-FDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLD  345 (536)
Q Consensus       271 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  345 (536)
                      ++|.+...    +...+...+.|+.|++++|.++...... +..                        .....+.|+.|+
T Consensus       166 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~------------------------~l~~~~~L~~L~  221 (344)
T d2ca6a1         166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE------------------------GLAYCQELKVLD  221 (344)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT------------------------TGGGCTTCCEEE
T ss_pred             ccccccccccccccchhhhhhhhcccccccccccccccccchhh------------------------hhcchhhhcccc
Confidence            66665422    2223445566777777666654211000 000                        001145667777


Q ss_pred             ccCCcCcCC----CcccccCCCCCCEEeCCCccCCCCCc----ccccC--CCCCCEEeCCCCcccccC----chhhh-CC
Q 045598          346 LSCNKLIGP----IPLQIGNLTRIQTLNLSHNNLTGSIP----STFSN--LKYVESLDLSNNKLNGKI----PHQLV-EL  410 (536)
Q Consensus       346 l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~--l~~L~~L~L~~n~l~~~~----~~~~~-~l  410 (536)
                      +++|.++..    +...+..+++|++|+|++|.+++...    +.+..  .+.|++|++++|+|+...    ...+. +.
T Consensus       222 Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~  301 (344)
T d2ca6a1         222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM  301 (344)
T ss_dssp             CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccC
Confidence            777766432    23445667777777777777764321    22222  356778888888775422    22232 46


Q ss_pred             CCCCEEEccCCcCcc
Q 045598          411 KTLEVFSVAYNNLSG  425 (536)
Q Consensus       411 ~~L~~L~l~~N~l~~  425 (536)
                      ++|+.|++++|++..
T Consensus       302 ~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         302 PDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTSBSCT
T ss_pred             CCCCEEECCCCcCCC
Confidence            778888888887753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.7e-14  Score=136.40  Aligned_cols=251  Identities=16%  Similarity=0.174  Sum_probs=166.0

Q ss_pred             cccCCCCCCCeEEccCCccccCC----cccccCCCCCCEEEccCCcCcccCCCCCCCCCccEEEccCCCCCCcccccccC
Q 045598          161 RWLGNLTRLQCIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF  236 (536)
Q Consensus       161 ~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  236 (536)
                      ..+.....++.|++++|.+....    ...+...++|+.++++++..........  ..+           ..+. ..+.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~--~~~-----------~~l~-~~l~   90 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP--EAL-----------RLLL-QALL   90 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH--HHH-----------HHHH-HHHT
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccc--hHH-----------HHHH-HHHh
Confidence            34556778888888888775322    2345566788888887665431110000  000           0111 1256


Q ss_pred             CCCCccEEEccCCcCCCcc----chhhhCCCCccEEEcccccccccccc-------------cccCCCCCCEEecCCCcC
Q 045598          237 NCSSLVTLDLSYNRLNGSI----SDWVDGLSQLSHLILGHNNLEGEVPI-------------QLCELNQLQLLDLSNNNL  299 (536)
Q Consensus       237 ~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~~  299 (536)
                      .+++|++|++++|.+....    ...+...++|++|++++|.+......             .....+.|+.+++++|.+
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            7789999999999987642    33455689999999999987532111             123568999999999887


Q ss_pred             CCCCCccccccchhhhccccceeEEeeccceeeeccccccccceEEccCCcCcCC-----CcccccCCCCCCEEeCCCcc
Q 045598          300 HGPIPSCFDNTTLHEKKQIREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGP-----IPLQIGNLTRIQTLNLSHNN  374 (536)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~  374 (536)
                      .......+...                        ....+.|++|++++|.+...     ....+..+++|+.|+|++|.
T Consensus       171 ~~~~~~~l~~~------------------------l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         171 ENGSMKEWAKT------------------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             TGGGHHHHHHH------------------------HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             cccccccccch------------------------hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc
Confidence            63322222110                        01256899999999998642     23457788999999999999


Q ss_pred             CCCC----CcccccCCCCCCEEeCCCCcccccCchhh----hC--CCCCCEEEccCCcCcccC----CCCcc-ccccCCc
Q 045598          375 LTGS----IPSTFSNLKYVESLDLSNNKLNGKIPHQL----VE--LKTLEVFSVAYNNLSGEI----PEWTA-QFATFNE  439 (536)
Q Consensus       375 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~--l~~L~~L~l~~N~l~~~~----~~~~~-~~~~l~~  439 (536)
                      ++..    +...+..+++|++|+|++|.+++.....+    ..  .+.|+.|++++|+++...    ...+. ..+.++.
T Consensus       227 i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~  306 (344)
T d2ca6a1         227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  306 (344)
T ss_dssp             CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence            8632    34567788999999999999986433333    32  467999999999987532    22221 3567889


Q ss_pred             cccccCcCCC
Q 045598          440 SSYEGNTFLC  449 (536)
Q Consensus       440 l~l~~n~~~c  449 (536)
                      +++.||.+..
T Consensus       307 L~l~~N~~~~  316 (344)
T d2ca6a1         307 LELNGNRFSE  316 (344)
T ss_dssp             EECTTSBSCT
T ss_pred             EECCCCcCCC
Confidence            9999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.8e-12  Score=103.95  Aligned_cols=87  Identities=18%  Similarity=0.153  Sum_probs=74.2

Q ss_pred             ccccceEEccCC-cCcCCCcccccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEE
Q 045598          338 LSLLSGLDLSCN-KLIGPIPLQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVF  416 (536)
Q Consensus       338 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  416 (536)
                      +++|++|++++| .++...+.+|.++++|+.|+|++|+++++.+++|..+++|++|+|++|+++.+.++.|.. .+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccc
Confidence            567888888765 477677788999999999999999999888899999999999999999999666666654 479999


Q ss_pred             EccCCcCcc
Q 045598          417 SVAYNNLSG  425 (536)
Q Consensus       417 ~l~~N~l~~  425 (536)
                      ++++|++.+
T Consensus       109 ~L~~Np~~C  117 (156)
T d2ifga3         109 VLSGNPLHC  117 (156)
T ss_dssp             ECCSSCCCC
T ss_pred             ccCCCcccC
Confidence            999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=7.8e-14  Score=121.04  Aligned_cols=144  Identities=22%  Similarity=0.281  Sum_probs=99.9

Q ss_pred             CccEEEccCC--cCCCccchhhhCCCCccEEEcccccccccccccccCCCCCCEEecCCCcCCCCCCccccccchhhhcc
Q 045598          240 SLVTLDLSYN--RLNGSISDWVDGLSQLSHLILGHNNLEGEVPIQLCELNQLQLLDLSNNNLHGPIPSCFDNTTLHEKKQ  317 (536)
Q Consensus       240 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  317 (536)
                      .++.+++.+.  .+. ..+..+..+++|++|++++|.++. ++ .+..+++|+.|++++|.++.. +....         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~---------   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA---------   90 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccc---------
Confidence            3445555543  222 455678888889999999988874 43 477888899999988887643 22211         


Q ss_pred             ccceeEEeeccceeeeccccccccceEEccCCcCcCCCcccccCCCCCCEEeCCCccCCCCCc-ccccCCCCCCEEeCCC
Q 045598          318 IREKFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGPIPLQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKYVESLDLSN  396 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~  396 (536)
                                         .++.|++|++++|.++..  ..+..+++|+.|++++|+++.... ..+..+++|+.|++++
T Consensus        91 -------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          91 -------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             -------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             -------------------cccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCC
Confidence                               145688888888888743  346778888888888888875422 4578888888888888


Q ss_pred             CcccccCch----------hhhCCCCCCEEE
Q 045598          397 NKLNGKIPH----------QLVELKTLEVFS  417 (536)
Q Consensus       397 n~l~~~~~~----------~~~~l~~L~~L~  417 (536)
                      |++....+.          .+..+|+|+.||
T Consensus       150 N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            887643332          155678888776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=7.7e-14  Score=121.08  Aligned_cols=126  Identities=21%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             CcCEEEccCC--cCcccCChhHhhcCCCCcEEEccCCCCcccCCccCCCCCCCCEEEccCCcCccccchhHhhCCCCCCE
Q 045598           22 RLGMLDISNN--NFRGHIPVEIADVLPSLYAFNNSMNALDGSIPSSFGNMKFLQFLDLSNNHLTGEIPEHLAVGCVNLRF   99 (536)
Q Consensus        22 ~L~~L~ls~~--~~~~~~p~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~   99 (536)
                      ..+.+++++.  .+. .++..+.. +++|+.|++++|.++.. + .+.++++|++|++++|.++ .+|... ..+++|++
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLST-LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCE
T ss_pred             ccceeeeecccCchh-hhhhHHhc-ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccc-cccccccc
Confidence            3444555443  232 44444544 56666777766666632 2 3666666666666666665 555322 33445666


Q ss_pred             EEcccCccCccCCccccCCCCCCEEEccCCcCcccCC-cCCCCCCccCeeecccCcC
Q 045598          100 LALSNNNLQGHMFSRNFNLTNLKWLQLEGSRFVGEIP-QSLSKCSSLEGLYLNNNSL  155 (536)
Q Consensus       100 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~  155 (536)
                      |++++|.++..  ..+..+++|++|++++|++..... ..+..+++|+.|++++|++
T Consensus        98 L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            66666666543  234455556666666665543211 2345555555555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.8e-08  Score=83.54  Aligned_cols=64  Identities=28%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CCCCCCEEeCCCccCCCCC--cccccCCCCCCEEeCCCCcccccCchhhhCCCCCCEEEccCCcCc
Q 045598          361 NLTRIQTLNLSHNNLTGSI--PSTFSNLKYVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS  424 (536)
Q Consensus       361 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~  424 (536)
                      .+++|++|+|++|+++...  +..+..+++|+.|+|++|+|+...+-.+....+|+.|++++|++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444555555555444321  122344445555555555544333222233334444555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.1e-08  Score=82.04  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=35.7

Q ss_pred             cccCCCCCCEEeCCCccCCCCCcccccCCCCCCEEeCCCCcccccCch-------hhhCCCCCCEEE
Q 045598          358 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKYVESLDLSNNKLNGKIPH-------QLVELKTLEVFS  417 (536)
Q Consensus       358 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~  417 (536)
                      .++.+++|+.|+|++|.++...+-.+.....|+.|++++|++.....+       .+..+|+|+.||
T Consensus        86 ~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          86 IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            345566777777777777654332333445677777777777644332       245677777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=8.6e-06  Score=67.17  Aligned_cols=65  Identities=17%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             CCCCcCEEEccCC-cCcccCChhHhh---cCCCCcEEEccCCCCcccC----CccCCCCCCCCEEEccCCcCc
Q 045598           19 SHKRLGMLDISNN-NFRGHIPVEIAD---VLPSLYAFNNSMNALDGSI----PSSFGNMKFLQFLDLSNNHLT   83 (536)
Q Consensus        19 ~~~~L~~L~ls~~-~~~~~~p~~~~~---~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~   83 (536)
                      +.++|+.|+|+++ .+....-..++.   ..+.|+.|++++|.+....    ...+...+.|++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3456666666653 343222222221   1234555555555554311    122333455555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=1e-05  Score=66.64  Aligned_cols=14  Identities=14%  Similarity=0.242  Sum_probs=7.1

Q ss_pred             hCCCCCCEEEccCC
Q 045598          408 VELKTLEVFSVAYN  421 (536)
Q Consensus       408 ~~l~~L~~L~l~~N  421 (536)
                      ...++|+.|+++.+
T Consensus       128 ~~n~sL~~l~l~~~  141 (167)
T d1pgva_         128 EENESLLRVGISFA  141 (167)
T ss_dssp             HHCSSCCEEECCCC
T ss_pred             HhCCCccEeeCcCC
Confidence            33455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00012  Score=59.97  Aligned_cols=15  Identities=20%  Similarity=0.120  Sum_probs=8.2

Q ss_pred             CCCCCccCeeecccC
Q 045598          139 LSKCSSLEGLYLNNN  153 (536)
Q Consensus       139 ~~~l~~L~~L~l~~n  153 (536)
                      +...++|+.|+++.+
T Consensus       128 L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         128 LEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHCSSCCEEECCCS
T ss_pred             HHhCCCcCEEeCcCC
Confidence            344556666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.92  E-value=3.8e-05  Score=63.12  Aligned_cols=15  Identities=0%  Similarity=0.009  Sum_probs=7.2

Q ss_pred             CCCCCCEEecCCCcC
Q 045598          285 ELNQLQLLDLSNNNL  299 (536)
Q Consensus       285 ~l~~L~~L~l~~n~~  299 (536)
                      ..++|++|++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TCCSCCEEECTTSCC
T ss_pred             cCCccCeeeccCCcc
Confidence            344455555555443