Citrus Sinensis ID: 045605

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Secondary Structure (PSIPRED)
ccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHEHHEHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
klvlntipiWVTSLTFGISVAQAstssvkqgatmnrkvgnnfrippasiySLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVEskrlkivpkeiihegkrgplsmivfclapqylilgsgdgftLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Flexible Loop (DISEMBL)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVeskrlkivpkeiihegkrgplSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Low Complexity Region (SEG)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Disordered region (IsUnstruct)
**VLNTIPIWVTSLTFGISVAQA************RKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGI***
Disordered Region (DISOPRED)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Disordered Region (DISEMBL)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Disordered Region (DISPRO)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q9M331	602	Probable peptide/nitrate	yes	no	0.975	0.265	0.491	8e-41
P0CI03	575	Putative peptide/nitrate	no	no	0.939	0.267	0.472	4e-39
Q9LFR1	552	Probable peptide/nitrate	no	no	0.981	0.291	0.433	1e-34
Q9C7U1	555	Probable peptide/nitrate	no	no	1.0	0.295	0.405	2e-32
Q9M1I2	555	Probable peptide/nitrate	no	no	1.0	0.295	0.366	2e-31
Q0WP01	557	Probable peptide/nitrate	no	no	1.0	0.294	0.416	4e-31
Q8RX67	538	Probable peptide/nitrate	no	no	0.957	0.291	0.427	5e-31
Q8VZE2	557	Probable peptide/nitrate	no	no	0.975	0.287	0.397	7e-30
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.951	0.278	0.406	1e-29
Q9SK96	564	Probable peptide/nitrate	no	no	0.963	0.280	0.413	8e-29

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  166 bits (419), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 117/181 (64%), Gaps = 21/181 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKV-GNNFRIPPASIYSLGAVANLL 59
           KL++N IPIW  +L FG+   Q+ST  +KQ   M+R + G +F +PPAS++SL A++ ++
Sbjct: 338 KLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIII 397

Query: 60  T----------------GNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIH 103
           T                GNERGI ILQRIG+GM FS+ AM +AA +E KRL    +   H
Sbjct: 398 TVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEH--H 455

Query: 104 EGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163
             K   LS I   LAPQ+L+LG  D FTLVGLQEYFY QVP SMR+LGIA YL+++G  S
Sbjct: 456 MNKTMTLSAI--WLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAAS 513

Query: 164 Y 164
           +
Sbjct: 514 F 514

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 26/180 (14%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KL++N IPIW ++L FGI   QAST  +KQ  TM+R +G  F +PPAS+++L A+  ++ 
Sbjct: 338 KLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLTALTLIIS 396

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          T N+RGI ILQRIG GM FS++ M +AA VE +RL          
Sbjct: 397 LTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQRLD-------RT 449

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
               P+S+I   LAPQ++++G  D FTLVGLQEYFY QVP SMR+LGIA YL++IG  S+
Sbjct: 450 NNNKPMSVI--WLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASF 507

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFR1|PTR50_ARATH Probable peptide/nitrate transporter At5g14940 OS=Arabidopsis thaliana GN=At5g14940 PE=2 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 111/180 (61%), Gaps = 19/180 (10%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS--------- 51
           KL+L  +PIW   L F +   Q +T   KQG TM R +G NF+IPPA++ S         
Sbjct: 305 KLLLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILL 364

Query: 52  -------LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                  L  +A  LT NE+GI + +R+GIGM  S++A+ +AA VE KRLKI  K +   
Sbjct: 365 MPFYDKILIPIAKKLTKNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKI-SKMMKTT 423

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
               P+S++   L PQY++LG  D FT+VG+QE+FY++VP SMR +G ALY ++ G+GS+
Sbjct: 424 PNLDPVSIL--WLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSF 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 16/180 (8%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL-- 58
           K VL+ IPIW+ SL FGI  AQ+ T   KQG+TM+R + +  ++P A++    ++A L  
Sbjct: 314 KAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQCFISLAILVF 373

Query: 59  --------------LTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                         +T    GI  LQRI  G+  S+++M +AA VE KRLK      + +
Sbjct: 374 IPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAALVEMKRLKTARDHGLVD 433

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +  + M V  L PQY++ G  D FT+VGLQE+FY +VP  +R++G+ALYL+IIGIG++
Sbjct: 434 SPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNF 493

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 109/180 (60%), Gaps = 16/180 (8%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KL+L  IPIW++ + F  ++ Q +T  +KQG+ M+R +GN+F IPPA+  S+  V  L+ 
Sbjct: 305 KLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILIL 364

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          T +  GI  LQRIG+G+  +   M +   VE+KRLK+     + +
Sbjct: 365 IPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLID 424

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +  + M    L PQY+++G GD FT+VG+QE FY Q+P +MR++G A++++++G+GS+
Sbjct: 425 SPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSF 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1

 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 16/180 (8%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS--------- 51
           K VL   PIW+T L + +  AQ+ T   KQGATM R +   ++I PA++ S         
Sbjct: 314 KSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIF 373

Query: 52  -------LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                  L  +A   T    GI +LQRIG G+  S LAM VAA VE KRLK      + +
Sbjct: 374 IPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVD 433

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                + M V+ L PQY++ G  D F +VGLQE+FY QVP  +R++G+ALYL+I GIG++
Sbjct: 434 SPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNF 493

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 23/180 (12%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS--------- 51
           K VL  IPIW+TS+ + I  AQ+ T   KQGATM+R +     +P A++ S         
Sbjct: 302 KAVLRLIPIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVF 361

Query: 52  -------LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                  L   A   T N  GI  LQRIG G+  S+LAM +AA VE+KRL+    E+   
Sbjct: 362 IPIYDRLLVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARDEL--- 418

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                + M V+ L PQY+I G  D FT+VGLQE+FY QVP+ +R++G+AL L+I G G+Y
Sbjct: 419 ----SIPMSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNY 474

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2

 Score =  129 bits (325), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 16/176 (9%)

Query: 3   VLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPAS-------------- 48
           ++  IP+W T+L + I  AQ  T   KQG TM+R +    +IPPAS              
Sbjct: 316 LIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVP 375

Query: 49  IYS--LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGK 106
           IY      +A L+T    GI  L+RIG G+  S + M +AA VE KRL+   +  + +  
Sbjct: 376 IYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQP 435

Query: 107 RGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162
              L M ++ L PQYL+LG  D +TLVG+QE+FY+QVP  +R++G+ALYL+ +G+G
Sbjct: 436 EATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVG 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 16/172 (9%)

Query: 7   IPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL------- 59
           IP+W+T+L + I  AQ  T   KQG TM R +     IPPAS+  L +++ +L       
Sbjct: 324 IPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDR 383

Query: 60  ---------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPL 110
                    T +  GI  L+RIG GM  + L M VAA VESKRL+   +  + +  +  L
Sbjct: 384 VLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTL 443

Query: 111 SMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162
            M ++ L PQY++LG  D  TLVG+QE+FY+QVP  +R+LG+A+YL+ +G+G
Sbjct: 444 PMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGVG 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1

 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 16/174 (9%)

Query: 7   IPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAV----------- 55
           IPIW+TS+   I  AQ +T   KQG T++RK+   F IPPAS  +L  +           
Sbjct: 327 IPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPASFQALIGLSIFISVPTYER 386

Query: 56  -----ANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPL 110
                A L+T    GI +LQRIG GM  S L M VAA VE KRL+   +  + +     +
Sbjct: 387 VFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALVEMKRLETAKEHGLVDRPDATI 446

Query: 111 SMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
            M ++   PQYL+LG  D F+LVG QE+FY QVP  +R++G+AL L+ +G+ S+
Sbjct: 447 PMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLASF 500

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
147802503	1164	hypothetical protein VITISV_002486 [Viti	0.993	0.140	0.588	1e-51
225449352	593	PREDICTED: putative peptide/nitrate tran	0.993	0.274	0.588	7e-50
357461027	501	Peptide transporter PTR3-A [Medicago tru	1.0	0.327	0.566	1e-49
224101061	598	predicted protein [Populus trichocarpa]	1.0	0.274	0.571	3e-49
225440516	534	PREDICTED: probable peptide/nitrate tran	0.975	0.299	0.588	4e-49
255586949	1133	Peptide transporter, putative [Ricinus c	0.975	0.141	0.561	8e-48
356566585	593	PREDICTED: putative peptide/nitrate tran	0.975	0.269	0.555	2e-47
224090809	587	predicted protein [Populus trichocarpa]	0.975	0.272	0.55	2e-47
356496092	594	PREDICTED: probable peptide/nitrate tran	0.981	0.271	0.566	6e-47
224140315	587	predicted protein [Populus trichocarpa]	0.975	0.272	0.55	2e-46

>gi|147802503|emb|CAN73118.1| hypothetical protein VITISV_002486 [Vitis vinifera]

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/180 (58%), Positives = 129/180 (71%), Gaps = 17/180 (9%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KLVLN IPIW T+LTFG+ VAQA+T  +KQ  TMN ++  +  IP ASIYS+ AV  ++ 
Sbjct: 355 KLVLNMIPIWFTTLTFGLCVAQATTFFIKQSDTMNLEIIKDVSIPSASIYSISAVGMIIS 414

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TG ERGIKILQRIG GM FSVL+M+ AA VE KRL++  +E+   
Sbjct: 415 VTIYEKILVPLLRRATGTERGIKILQRIGFGMIFSVLSMSTAALVERKRLRVAEEELTG- 473

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
           GK GP+SM V  LAPQYLILG GDGFTLVGLQEYFY QVP SMR+LGIA YL++IG+G++
Sbjct: 474 GKTGPVSMSVLWLAPQYLILGFGDGFTLVGLQEYFYGQVPDSMRSLGIAFYLSVIGVGNF 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449352|ref|XP_002277582.1| PREDICTED: putative peptide/nitrate transporter At2g37900 [Vitis vinifera]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 129/180 (71%), Gaps = 17/180 (9%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KLVLN IPIW T+LTFG+ VAQA+T  +KQ  TMN ++  +  IP ASIYS+ AV  ++ 
Sbjct: 339 KLVLNMIPIWFTTLTFGLCVAQATTFFIKQSDTMNLEIIKDVSIPSASIYSISAVGMIIS 398

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TG ERGIKILQRIG GM FSVL+M+ AA VE KRL++  +E+   
Sbjct: 399 VTIYEKILVPLLRRATGTERGIKILQRIGFGMIFSVLSMSTAALVERKRLRVAEEELTG- 457

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
           GK GP+SM V  LAPQYLILG GDGFTLVGLQEYFY QVP SMR+LGIA YL++IG+G++
Sbjct: 458 GKTGPVSMSVLWLAPQYLILGFGDGFTLVGLQEYFYGQVPDSMRSLGIAFYLSVIGVGNF 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461027|ref|XP_003600795.1| Peptide transporter PTR3-A [Medicago truncatula] gi|355489843|gb|AES71046.1| Peptide transporter PTR3-A [Medicago truncatula]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 130/180 (72%), Gaps = 16/180 (8%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KLVLN IPIW+ SLT GI++AQA+T  VKQ A+MN K+ +NF IPP S+ S+ A+  L+ 
Sbjct: 242 KLVLNIIPIWLASLTTGITLAQATTLFVKQAASMNLKLSDNFTIPPGSVVSVTAIGTLIF 301

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TGNERGI IL+RI IG+ FSV+ M VAA VE+KRL++  +EI+  
Sbjct: 302 VPLYDKVLVPIMRKITGNERGISILRRIAIGLAFSVMVMIVAALVEAKRLRMHEQEILRS 361

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
           G+ G  +M VF L PQYLILG GD F+LVGLQEYFY QVP SMR+LG+ALYL++IG+GS+
Sbjct: 362 GETGKNTMSVFWLVPQYLILGFGDSFSLVGLQEYFYDQVPDSMRSLGMALYLSVIGVGSF 421

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101061|ref|XP_002312125.1| predicted protein [Populus trichocarpa] gi|222851945|gb|EEE89492.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/182 (57%), Positives = 134/182 (73%), Gaps = 18/182 (9%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KLVLN IPIW+TSL FG+ V Q +T  VKQGAT+NRK+G+NF IPPASI+SL AV  ++ 
Sbjct: 338 KLVLNIIPIWLTSLPFGLCVVQTATFFVKQGATLNRKIGHNFEIPPASIFSLSAVGMIIS 397

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEI-IH 103
                          TGNERGI +L+RIG G+ FSV+AM+VAA VE KR KI  ++I + 
Sbjct: 398 VVIYDKILVPFLRRATGNERGISVLKRIGSGLIFSVVAMSVAALVERKRQKIAEEDIDVL 457

Query: 104 EGKRG-PLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG 162
           +G++   L M VF LAPQ+LILG GDGFTLVGLQE+FY QVP SMR+LG+A +L+++G G
Sbjct: 458 DGEKNVELPMSVFWLAPQFLILGLGDGFTLVGLQEFFYDQVPDSMRSLGMAFFLSVLGAG 517

Query: 163 SY 164
           ++
Sbjct: 518 NF 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440516|ref|XP_002272737.1| PREDICTED: probable peptide/nitrate transporter At3g53960 [Vitis vinifera]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 127/180 (70%), Gaps = 20/180 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           +L+LN IPIW++ L FGI VAQAST  +KQGATMNRK+ N+F IP ASIYSL A+  +  
Sbjct: 278 ELILNMIPIWLSCLPFGICVAQASTFFIKQGATMNRKIDNDFLIPAASIYSLAAIGMIAS 337

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TG ERGIKILQRIGIGM FS++ M VAA VE KRL +V K     
Sbjct: 338 VTIYEKILVPVLRQATGTERGIKILQRIGIGMVFSMIGMIVAALVEKKRLGVVEKN---- 393

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
            + G LSM VF LAPQ++ILG GDGF+LVGLQEYFY QVP SMR+LGIA YL++IG  ++
Sbjct: 394 PQTGSLSMSVFWLAPQFVILGIGDGFSLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANF 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586949|ref|XP_002534074.1| Peptide transporter, putative [Ricinus communis] gi|223525891|gb|EEF28309.1| Peptide transporter, putative [Ricinus communis]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 124/180 (68%), Gaps = 20/180 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KL+LN IPIW+ +L FGISVAQ +T  +KQ  T+ R VGN F IPPAS+Y++ A+  ++ 
Sbjct: 336 KLILNMIPIWLVTLPFGISVAQTATFFIKQSTTLGRNVGNGFLIPPASVYAICAIGMIIS 395

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TGNERGIKILQRIGIGM FSV AM  +A VE KRL +V K     
Sbjct: 396 VTVYEKILVPILRRVTGNERGIKILQRIGIGMVFSVAAMVTSALVERKRLSVVEKN---- 451

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
           G +G L+M VF L PQ+LI G GDGFT+VGLQEYFY QVP SMR+LGIA YL++IG  ++
Sbjct: 452 GAKGSLTMSVFWLGPQFLIFGIGDGFTIVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANF 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566585|ref|XP_003551511.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like [Glycine max]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 124/180 (68%), Gaps = 20/180 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGA------ 54
           KL++N IPIWV+++ FG+ VAQ +T  VKQG  +NRK+GN F IPPASI+++ A      
Sbjct: 336 KLIINIIPIWVSTIPFGMCVAQTATFFVKQGTQLNRKIGNGFEIPPASIFTVAALGMVVS 395

Query: 55  ----------VANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                     V   LT NERGI ILQRIG GM FS+  M VAA VE KRL+ V ++    
Sbjct: 396 VAIYDKILVPVLRRLTQNERGINILQRIGFGMLFSIATMIVAALVEKKRLEAVERDPF-- 453

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +G L+M VF LAPQ+LI+G GDGFTLVGLQEYFY QVP SMR+LGIA YL++IG  S+
Sbjct: 454 --KGSLTMSVFWLAPQFLIIGFGDGFTLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAASF 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090809|ref|XP_002309091.1| predicted protein [Populus trichocarpa] gi|222855067|gb|EEE92614.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 126/180 (70%), Gaps = 20/180 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KL+LN IPIW+  L FGISVAQ +T  +KQG T++R +GN  +IPPAS+Y+L A+  ++ 
Sbjct: 333 KLILNLIPIWLAMLPFGISVAQTATFFIKQGTTLDRNIGNGLQIPPASVYALAAIGMIVS 392

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TGNERGIKILQRIG GM FS+  M V+A VE KRL +V K+ +  
Sbjct: 393 VTIYEKILVPVLRRATGNERGIKILQRIGFGMLFSISTMVVSALVERKRLGVVAKDPV-- 450

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +G LSM VF LAPQ++I+G GD FTLVGLQEYFY QVP SMR+LGIA YL++IG  ++
Sbjct: 451 --KGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANF 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496092|ref|XP_003516904.1| PREDICTED: probable peptide/nitrate transporter At3g53960-like [Glycine max]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 124/180 (68%), Gaps = 19/180 (10%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL-- 58
           KL++N IPIWV +L FGI  +Q ST  +KQGA MNRK+GN F +PPASI++L A+  +  
Sbjct: 336 KLIINMIPIWVFTLPFGICASQTSTFFIKQGAIMNRKIGNGFVVPPASIFTLAAIGMIVS 395

Query: 59  --------------LTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                         LTGNERGI ILQRIGIGM FSV+ M  AA VE KRL+ V    ++ 
Sbjct: 396 VIIYDKLLVPVLRKLTGNERGINILQRIGIGMIFSVITMIAAALVEKKRLEAVE---MNG 452

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +G LSM    LAPQ+LI+G GDGF LVGLQEYFY QVP SMR+LGIALYL++IG  S+
Sbjct: 453 PLKGSLSMSALWLAPQFLIIGFGDGFALVGLQEYFYDQVPDSMRSLGIALYLSVIGAASF 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140315|ref|XP_002323528.1| predicted protein [Populus trichocarpa] gi|222868158|gb|EEF05289.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/180 (55%), Positives = 124/180 (68%), Gaps = 20/180 (11%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
           KL+LN IPIW+ +L FGISVAQ +T  VKQG  ++R +GN   IPPASI++L A   ++ 
Sbjct: 333 KLILNLIPIWLATLPFGISVAQTATFFVKQGTMLDRNIGNGVEIPPASIFALSAFGMIVA 392

Query: 60  ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                          TGNERGIKILQRIG GM FS+  M V+A VE KRL +V K+ +  
Sbjct: 393 VAIYEKILVPVLRRATGNERGIKILQRIGFGMLFSISTMVVSALVERKRLGVVEKDPV-- 450

Query: 105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             +G LSM VF LAPQ++I+G GD FTLVGLQEYFY QVP SMR+LGIA YL++IG  ++
Sbjct: 451 --KGSLSMSVFWLAPQFIIIGVGDAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVIGAANF 508

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.975	0.265	0.491	3.5e-36
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.939	0.267	0.477	3.5e-34
TAIR|locus:2147840	552	AT5G14940 [Arabidopsis thalian	0.981	0.291	0.433	8.2e-32
TAIR|locus:2206991	555	AT1G72140 [Arabidopsis thalian	1.0	0.295	0.411	1.2e-29
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	1.0	0.295	0.366	1.5e-28
TAIR|locus:2030316	538	AT1G72130 [Arabidopsis thalian	0.957	0.291	0.433	7.9e-28
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	1.0	0.294	0.416	1.2e-27
TAIR|locus:2030326	557	AT1G72120 [Arabidopsis thalian	0.981	0.289	0.401	1.2e-27
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.981	0.286	0.406	5.7e-27
TAIR|locus:2009472	564	AT1G22550 [Arabidopsis thalian	0.987	0.287	0.410	3.4e-26

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 89/181 (49%), Positives = 117/181 (64%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKV-GNNFRIPPASIYSLGAVANLL 59
             KL++N IPIW  +L FG+   Q+ST  +KQ   M+R + G +F +PPAS++SL A++ ++
Sbjct:   338 KLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSLIALSIII 397

Query:    60 T----------------GNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIH 103
             T                GNERGI ILQRIG+GM FS+ AM +AA +E KRL    +   H
Sbjct:   398 TVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAMIIAALIEKKRLDYAKEH--H 455

Query:   104 EGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163
               K   LS I   LAPQ+L+LG  D FTLVGLQEYFY QVP SMR+LGIA YL+++G  S
Sbjct:   456 MNKTMTLSAI--WLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYLSVLGAAS 513

Query:   164 Y 164
             +
Sbjct:   514 F 514

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 3.5e-34, P = 3.5e-34
 Identities = 86/180 (47%), Positives = 117/180 (65%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
             KL++N IPIW ++L FGI   QAST  +KQ  TM+R +G  F +PPAS+++L A+  ++ 
Sbjct:   338 KLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGG-FTVPPASMFTLTALTLIIS 396

Query:    60 ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                            T N+RGI ILQRIG GM FS++ M +AA VE +RL     +  + 
Sbjct:   397 LTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQRL-----DRTNN 451

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
              K  P+S+I   LAPQ++++G  D FTLVGLQEYFY QVP SMR+LGIA YL++IG  S+
Sbjct:   452 NK--PMSVI--WLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASF 507

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2147840 AT5G14940 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 8.2e-32, P = 8.2e-32
 Identities = 78/180 (43%), Positives = 111/180 (61%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS--------- 51
             KL+L  +PIW   L F +   Q +T   KQG TM R +G NF+IPPA++ S         
Sbjct:   305 KLLLRLLPIWTMLLMFAVIFQQPATFFTKQGMTMKRNIGPNFKIPPATLQSTITLSIILL 364

Query:    52 -------LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                    L  +A  LT NE+GI + +R+GIGM  S++A+ +AA VE KRLKI  K +   
Sbjct:   365 MPFYDKILIPIAKKLTKNEKGISVKERMGIGMFLSIIAIVIAALVERKRLKI-SKMMKTT 423

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                 P+S++   L PQY++LG  D FT+VG+QE+FY++VP SMR +G ALY ++ G+GS+
Sbjct:   424 PNLDPVSIL--WLLPQYILLGISDIFTVVGMQEFFYSEVPVSMRTMGFALYTSVFGVGSF 481

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 1.2e-29, P = 1.2e-29
 Identities = 74/180 (41%), Positives = 108/180 (60%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIY---SLGA--- 54
             K VL+ IPIW+ SL FGI  AQ+ T   KQG+TM+R + +  ++P A++    SL     
Sbjct:   314 KAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISSTLQVPAATLQCFISLAILVF 373

Query:    55 ----------VANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                       +A  +T    GI  LQRI  G+  S+++M +AA VE KRLK      + +
Sbjct:   374 IPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVIAALVEMKRLKTARDHGLVD 433

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
               +  + M V  L PQY++ G  D FT+VGLQE+FY +VP  +R++G+ALYL+IIGIG++
Sbjct:   434 SPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNF 493

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/180 (36%), Positives = 109/180 (60%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLL- 59
             KL+L  IPIW++ + F  ++ Q +T  +KQG+ M+R +GN+F IPPA+  S+  V  L+ 
Sbjct:   305 KLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILIL 364

Query:    60 ---------------TGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                            T +  GI  LQRIG+G+  +   M +   VE+KRLK+     + +
Sbjct:   365 IPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLID 424

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
               +  + M    L PQY+++G GD FT+VG+QE FY Q+P +MR++G A++++++G+GS+
Sbjct:   425 SPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSF 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 7.9e-28, P = 7.9e-28
 Identities = 78/180 (43%), Positives = 105/180 (58%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS---LGAV-- 55
             K VL  IPIW+TS+ + I  AQ+ T   KQGATM+R +     +P A++ S   L  V  
Sbjct:   302 KAVLRLIPIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVF 361

Query:    56 -----------ANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                        A   T N  GI  LQRIG G+  S+LAM +AA VE+KRL+    E+   
Sbjct:   362 IPIYDRLLVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARDEL--- 418

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                  + M V+ L PQY+I G  D FT+VGLQE+FY QVP+ +R++G+AL L+I G G+Y
Sbjct:   419 ----SIPMSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNY 474

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 75/180 (41%), Positives = 102/180 (56%)

Query:     1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYS--------- 51
             K VL   PIW+T L + +  AQ+ T   KQGATM R +   ++I PA++ S         
Sbjct:   314 KSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIF 373

Query:    52 -------LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHE 104
                    L  +A   T    GI +LQRIG G+  S LAM VAA VE KRLK      + +
Sbjct:   374 IPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVD 433

Query:   105 GKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                  + M V+ L PQY++ G  D F +VGLQE+FY QVP  +R++G+ALYL+I GIG++
Sbjct:   434 SPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNF 493

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 71/177 (40%), Positives = 103/177 (58%)

Query:     3 VLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPAS-------------- 48
             ++  IP+W T+L + I  AQ  T   KQG TM+R +    +IPPAS              
Sbjct:   316 LIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPPASLQVFIGISIVLFVP 375

Query:    49 IYS--LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGK 106
             IY      +A L+T    GI  L+RIG G+  S + M +AA VE KRL+   +  + +  
Sbjct:   376 IYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVEFKRLETAKEHGLIDQP 435

Query:   107 RGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163
                L M ++ L PQYL+LG  D +TLVG+QE+FY+QVP  +R++G+ALYL+ +G+GS
Sbjct:   436 EATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSALGVGS 492

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 72/177 (40%), Positives = 103/177 (58%)

Query:     3 VLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPAS-------------- 48
             ++  IP+W+T+L + I  AQ  T   KQG TM R +     IPPAS              
Sbjct:   320 LVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVP 379

Query:    49 IYS--LGAVANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGK 106
             IY   L  +   +T +  GI  L+RIG GM  + L M VAA VESKRL+   +  + +  
Sbjct:   380 IYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQP 439

Query:   107 RGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS 163
             +  L M ++ L PQY++LG  D  TLVG+QE+FY+QVP  +R+LG+A+YL+ +G+GS
Sbjct:   440 KTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGS 496

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 3.4e-26, P = 3.4e-26
 Identities = 73/178 (41%), Positives = 103/178 (57%)

Query:     3 VLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSL-GA------- 54
             ++  IPIW+TS+   I  AQ +T   KQG T++RK+   F IPPAS  +L G        
Sbjct:   323 LVRLIPIWITSVVSTIPYAQYATFFTKQGVTVDRKILPGFEIPPASFQALIGLSIFISVP 382

Query:    55 --------VANLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGK 106
                     +A L+T    GI +LQRIG GM  S L M VAA VE KRL+   +  + +  
Sbjct:   383 TYERVFLPLARLITKKPSGITMLQRIGAGMVLSSLNMVVAALVEMKRLETAKEHGLVDRP 442

Query:   107 RGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
                + M ++   PQYL+LG  D F+LVG QE+FY QVP  +R++G+AL L+ +G+ S+
Sbjct:   443 DATIPMSIWWFVPQYLLLGMIDVFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLASF 500

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018397001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (593 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam00854	372	pfam00854, PTR2, POT family	1e-16

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 29/177 (16%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANLLT 60
           + +L  +PIW   +       Q +T  V+Q  TM+R +   F IPPAS  S   +A L+ 
Sbjct: 207 QAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLIL 266

Query: 61  G------------NERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRG 108
                         +RG+ + QR G+GM   ++A  +AA VE+KR +       +    G
Sbjct: 267 LPILDFLVYPLLRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPR-------YAAALG 319

Query: 109 PLSMI------VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTII 159
             S        +    P+  I G G    L G  E+    +P+SM +L   L     
Sbjct: 320 LTSPGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.97
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.96
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.9
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.89
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.43
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.67
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.45
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.03
TIGR00901	356	2A0125 AmpG-related permease.	94.11
PRK11663	434	regulatory protein UhpC; Provisional	93.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.0
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	92.68
TIGR00893	399	2A0114 d-galactonate transporter.	92.58
TIGR00891	405	2A0112 putative sialic acid transporter.	92.42
PRK03545	390	putative arabinose transporter; Provisional	92.33
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	92.28
TIGR00900	365	2A0121 H+ Antiporter protein.	92.07
TIGR00805	633	oat sodium-independent organic anion transporter.	92.03
PRK11646	400	multidrug resistance protein MdtH; Provisional	91.83
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	91.75
PRK12382	392	putative transporter; Provisional	91.64
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	91.57
KOG3764	464	consensus Vesicular amine transporter [Intracellul	91.47
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	91.24
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	91.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	91.11
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	91.09
PRK10489	417	enterobactin exporter EntS; Provisional	90.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	90.67
PRK05122	399	major facilitator superfamily transporter; Provisi	90.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	90.3
PRK11646	400	multidrug resistance protein MdtH; Provisional	90.27
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	90.24
PRK12307	426	putative sialic acid transporter; Provisional	90.03
TIGR00892	455	2A0113 monocarboxylate transporter 1.	89.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	89.75
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	89.6
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	89.45
PRK10077	479	xylE D-xylose transporter XylE; Provisional	89.02
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	88.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	88.74
PRK03633	381	putative MFS family transporter protein; Provision	88.68
TIGR00895	398	2A0115 benzoate transport.	88.49
TIGR00900	365	2A0121 H+ Antiporter protein.	88.4
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	88.33
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	88.3
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	88.24
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	88.06
PRK10091	382	MFS transport protein AraJ; Provisional	87.94
PRK10054	395	putative transporter; Provisional	87.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	87.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	87.7
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	87.64
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	87.57
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	87.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	87.3
PRK09528	420	lacY galactoside permease; Reviewed	87.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	87.04
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	85.18
PRK14995	495	methyl viologen resistance protein SmvA; Provision	85.14
PRK03893	496	putative sialic acid transporter; Provisional	85.11
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	84.89
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	84.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	84.6
TIGR00898	505	2A0119 cation transport protein.	84.47
PRK10133	438	L-fucose transporter; Provisional	84.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	84.09
PRK05122	399	major facilitator superfamily transporter; Provisi	83.87
PRK03699	394	putative transporter; Provisional	83.42
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	83.34
PRK10642	490	proline/glycine betaine transporter; Provisional	83.3
TIGR00901	356	2A0125 AmpG-related permease.	83.13
PRK14995	495	methyl viologen resistance protein SmvA; Provision	82.81
TIGR00893	399	2A0114 d-galactonate transporter.	81.91
KOG3762	618	consensus Predicted transporter [General function	80.73
PRK09705	393	cynX putative cyanate transporter; Provisional	80.31

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-40  Score=287.98  Aligned_cols=159  Identities=44%  Similarity=0.696  Sum_probs=147.4

Q ss_pred             CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH----------------HhCCCC
Q 045605            1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL----------------LTGNER   64 (164)
Q Consensus         1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii----------------~~~~~~   64 (164)
                      |+++|++|+|.+.++||+++.|+.|.++.|+.+|||+++++|+||+++++++..+.++                ++++++
T Consensus       334 K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~  413 (571)
T KOG1237|consen  334 KAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPF  413 (571)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCC
Confidence            7899999999999999999999999999999999999995599999999999998876                344456


Q ss_pred             CCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCC
Q 045605           65 GIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVP  144 (164)
Q Consensus        65 ~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP  144 (164)
                      +++++||||+|++++.++|.+++.+|.+|++.+.+     ...+.++||++||+|||+++|++|+|.+++++||+|+|||
T Consensus       414 ~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP  488 (571)
T KOG1237|consen  414 GITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAP  488 (571)
T ss_pred             CCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCC
Confidence            78999999999999999999999999999998865     1234689999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhcCC
Q 045605          145 ASMRNLGIALYLTIIGIGSY  164 (164)
Q Consensus       145 ~~mks~~~~~~~l~~~~g~~  164 (164)
                      ++|||+++++|+++.|+|||
T Consensus       489 ~sMkS~~~al~l~t~a~G~~  508 (571)
T KOG1237|consen  489 ESMKSVATALWLLTVAVGNY  508 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999985

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.97  E-value=3.2e-32  Score=230.68  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=133.7

Q ss_pred             CeeeeehhHHhhHHHHHHHhhCcchHHHHHH-hHhcccCCCCcccCCccchhhhHHHHH---------Hh---CCCCCCC
Q 045605            1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQG-ATMNRKVGNNFRIPPASIYSLGAVANL---------LT---GNERGIK   67 (164)
Q Consensus         1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~-~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~---~~~~~~s   67 (164)
                      |++++.+|+++..++||++|+|++|++.+|+ ++.||++. |+++|++|+|++||++++         +.   +++++|+
T Consensus       281 ~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps  359 (498)
T COG3104         281 RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPS  359 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCC
Confidence            4678899999999999999999999998887 46688866 699999999999999988         33   3467899


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605           68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM  147 (164)
Q Consensus        68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m  147 (164)
                      ++.|+++|++++++++++....+.+...            +.+++|++|+++.|+++++||+|+||+|+|.++++||++|
T Consensus       360 ~~~KFalGl~l~g~~fl~l~~~~~~~~~------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~  427 (498)
T COG3104         360 TPIKFALGLILAGLGFLILLLAGIWFGG------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL  427 (498)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhcC------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence            9999999999999999998887654311            2467999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 045605          148 RNLGIALYLTIIGIGS  163 (164)
Q Consensus       148 ks~~~~~~~l~~~~g~  163 (164)
                      +|.+||+|+++.+.|+
T Consensus       428 ~s~~ma~wfLt~a~~~  443 (498)
T COG3104         428 KSFIMAMWFLTVAAGQ  443 (498)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999886

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.96  E-value=3.9e-29  Score=215.01  Aligned_cols=149  Identities=13%  Similarity=0.130  Sum_probs=129.5

Q ss_pred             CeeeeehhHHhhHHHHHHHhhCcchHHHHHH-hHhcccCCCCcccCCccchhhhHHHHH---------Hh---CCCCCCC
Q 045605            1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQG-ATMNRKVGNNFRIPPASIYSLGAVANL---------LT---GNERGIK   67 (164)
Q Consensus         1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~-~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~---~~~~~~s   67 (164)
                      |++..++++++..++||+.|+|++++..+.+ +++|++++ ||++|++|+|++||++++         |+   |++++|+
T Consensus       265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s  343 (493)
T PRK15462        265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVR  343 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            4677889999999999999999999876554 78999998 899999999999999988         33   3466899


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605           68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM  147 (164)
Q Consensus        68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m  147 (164)
                      .+.|+++|++++++|+++.++.....    .         +..++|++|++..|+++++||+|.+|+|++++++.||+++
T Consensus       344 ~~~Kfa~g~~~~g~~f~~l~~~~~~~----~---------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~  410 (493)
T PRK15462        344 IWGKFALGLGLMSAGFCILTLSARWS----A---------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV  410 (493)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhc----C---------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH
Confidence            99999999999999999887765321    1         1135899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhcC
Q 045605          148 RNLGIALYLTII-GIGS  163 (164)
Q Consensus       148 ks~~~~~~~l~~-~~g~  163 (164)
                      +|++||+|+++. ++|+
T Consensus       411 ~g~~mg~w~l~~~~~~~  427 (493)
T PRK15462        411 TGVLTGIYMLLSGAIAN  427 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999999954 6775

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.93  E-value=4.1e-26  Score=201.96  Aligned_cols=94  Identities=21%  Similarity=0.298  Sum_probs=87.3

Q ss_pred             CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH-------------HhCCCCCCC
Q 045605            1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL-------------LTGNERGIK   67 (164)
Q Consensus         1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii-------------~~~~~~~~s   67 (164)
                      |++++++|+++..++||.+++|++|++++|+++||++++ ++++|++++|++|+++++             ++|++++++
T Consensus       238 krll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls  316 (654)
T TIGR00926       238 KRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFT  316 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCC
Confidence            567899999999999999999999999999999999998 799999999999999987             455667799


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045605           68 ILQRIGIGMGFSVLAMTVAAFVESKRLK   95 (164)
Q Consensus        68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~   95 (164)
                      +++|+++|++++++++++++++|.++++
T Consensus       317 ~l~k~~iG~~la~la~~va~~ve~~~~~  344 (654)
T TIGR00926       317 SLRKMAVGGLLAALSFFVAALVQLKVNP  344 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999885

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.91  E-value=1.8e-24  Score=185.26  Aligned_cols=146  Identities=14%  Similarity=0.123  Sum_probs=128.2

Q ss_pred             eeehhHHhhHHHHHHHhhCcchHH-HHHHhHhcccCCCCcccCCccchhhhHHHHH------------HhCCCCCCCchh
Q 045605            4 LNTIPIWVTSLTFGISVAQASTSS-VKQGATMNRKVGNNFRIPPASIYSLGAVANL------------LTGNERGIKILQ   70 (164)
Q Consensus         4 ~~~lpi~~~~i~f~~~~~Q~~s~~-~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii------------~~~~~~~~s~l~   70 (164)
                      .+++|++++.++||+.|+|..+++ .+|++++|++++ ++++|+++++++|+++++            +++|++++++..
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~  350 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL  350 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence            457999999999999999999986 456678999998 799999999999999987            344557789999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      |+++|+++.+++++.++++..    .+.         ...++|+||++++|++.|+||++.+|+++++.++++|+++||.
T Consensus       351 k~~~G~~l~~~~~~~~~~~~~----~~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~  417 (475)
T TIGR00924       351 KFTLGMLFCGASFLTFAASIW----FAD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQ  417 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh----hcC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence            999999999999998887731    111         1246899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 045605          151 GIALYLTIIGIGS  163 (164)
Q Consensus       151 ~~~~~~l~~~~g~  163 (164)
                      .+|+|.++.++|+
T Consensus       418 ~~g~~~l~~~~g~  430 (475)
T TIGR00924       418 MLGMWFLAQAMGS  430 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.90  E-value=7.8e-24  Score=182.46  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=127.9

Q ss_pred             eeeehhHHhhHHHHHHHhhCcchHHHHHHh-HhcccCCCCcccCCccchhhhHHHHH---------HhCCCCCCCchhhh
Q 045605            3 VLNTIPIWVTSLTFGISVAQASTSSVKQGA-TMNRKVGNNFRIPPASIYSLGAVANL---------LTGNERGIKILQRI   72 (164)
Q Consensus         3 l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~-~~d~~i~~~~~ip~~~~~~~~~~~ii---------~~~~~~~~s~l~ki   72 (164)
                      ++..+++++..++||+.++|.++....|+. ++|+++. |+.+|++++|++|++.++         ++|.++++++.+|+
T Consensus       275 ~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~  353 (500)
T PRK09584        275 MIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKF  353 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHH
Confidence            445678889999999999999999998875 5788887 799999999999998876         46666668899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605           73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI  152 (164)
Q Consensus        73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~  152 (164)
                      ++|+++.+++++..+.....    +.         +...+|.+|++++|++.|+||++.+|.++++.++++|+++||.+|
T Consensus       354 ~~G~~l~~l~f~~l~~~~~~----~~---------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~  420 (500)
T PRK09584        354 AIGMVLCSGAFLVLPLGAKF----AN---------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIM  420 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999987776421    11         124689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 045605          153 ALYLTIIGIGS  163 (164)
Q Consensus       153 ~~~~l~~~~g~  163 (164)
                      |+|+++.++|+
T Consensus       421 g~~~l~~a~g~  431 (500)
T PRK09584        421 GSWFLTTAGAA  431 (500)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=3.3e-23  Score=178.29  Aligned_cols=147  Identities=16%  Similarity=0.154  Sum_probs=125.5

Q ss_pred             eeehhHHhhHHHHHHHhhCcchHHHHHHh-HhcccCCCCcccCCccchhhhHHHHH------------HhCCCCCCCchh
Q 045605            4 LNTIPIWVTSLTFGISVAQASTSSVKQGA-TMNRKVGNNFRIPPASIYSLGAVANL------------LTGNERGIKILQ   70 (164)
Q Consensus         4 ~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~-~~d~~i~~~~~ip~~~~~~~~~~~ii------------~~~~~~~~s~l~   70 (164)
                      +...++++..++||.+++|.++...+|.+ ++|++.. |+++|++++|++||++++            +.++++++++++
T Consensus       269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~  347 (489)
T PRK10207        269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPM  347 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHH
Confidence            34566778899999999999998888876 6888777 799999999999999875            455677899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      |+++|+++++++++.++..+...   ..         ...++|+||+++.|++.|+||.|.+|+++|++++.+|++++|+
T Consensus       348 k~~~G~~l~~~~~~~~~~~~~~~---~~---------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~  415 (489)
T PRK10207        348 KFTLGMFLCSLGFLTAAAAGMWF---AD---------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGF  415 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHH
Confidence            99999999999998877665321   00         1125789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 045605          151 GIALYLTIIGIGS  163 (164)
Q Consensus       151 ~~~~~~l~~~~g~  163 (164)
                      ++|+|+++.++|+
T Consensus       416 ~~g~~~l~~~ig~  428 (489)
T PRK10207        416 ILGMWFLTQAAAF  428 (489)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988876

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.89  E-value=8.8e-24  Score=175.45  Aligned_cols=151  Identities=25%  Similarity=0.307  Sum_probs=109.9

Q ss_pred             CeeeeehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCC-cccCCccchhhhHHHHH------------HhCCCCCCC
Q 045605            1 KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNN-FRIPPASIYSLGAVANL------------LTGNERGIK   67 (164)
Q Consensus         1 K~l~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~-~~ip~~~~~~~~~~~ii------------~~~~~~~~s   67 (164)
                      |.+.+.+|++.+.++|+..+.|..+....|..++|++++ + +++|++++|++|+++++            +.+++++++
T Consensus       208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~  286 (372)
T PF00854_consen  208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPS  286 (372)
T ss_dssp             CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT-----
T ss_pred             eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccch
Confidence            456788999999999999999999999999999999998 6 99999999999999976            334678899


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605           68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM  147 (164)
Q Consensus        68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m  147 (164)
                      +++|+++|++++++++++++.+|.+|...+.++|         +.+.+|++|.|++.+++|++.+++|+|..|+.+|+++
T Consensus       287 ~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~  357 (372)
T PF00854_consen  287 PPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRA  357 (372)
T ss_dssp             -HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhh
Confidence            9999999999999999999999998886654433         4566999999999999999999999996666666666


Q ss_pred             HHHHHHHHHHHHhh
Q 045605          148 RNLGIALYLTIIGI  161 (164)
Q Consensus       148 ks~~~~~~~l~~~~  161 (164)
                      ++.|+|+|+...++
T Consensus       358 p~~m~~~~~~~~~~  371 (372)
T PF00854_consen  358 PSSMMGIWFALSAF  371 (372)
T ss_dssp             SSSSTHHHHHHH--
T ss_pred             hHHHHHHHHHHhcc
Confidence            66666666665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.43  E-value=7.2e-05  Score=62.16  Aligned_cols=45  Identities=29%  Similarity=0.536  Sum_probs=39.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH
Q 045605          110 LSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI  158 (164)
Q Consensus       110 ~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~  158 (164)
                      .+++++|++|+|++.++||.    ..+|++|+++|++|||+.++++.++
T Consensus       328 ~~~~~~~~~~e~~l~~~g~~----~~~~~a~~~~p~~m~~~~~~~~~~~  372 (372)
T PF00854_consen  328 VPMYIFWLIPEYFLSGTGES----AAYEFAPSRAPSSMMGIWFALSAFS  372 (372)
T ss_dssp             HHHHHHHHHHHHTTTTHHHH----HHHHHTTTT-SSSSTHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhhHHHHH----HHHHhhHHhhhHHHHHHHHHHhccC
Confidence            47999999999999999999    9999999999999999999998763

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.67  E-value=0.097  Score=43.97  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|++|....|....+..+..|++.|+..++++....++|.
T Consensus        95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  145 (412)
T TIGR02332        95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM  145 (412)
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            346677888999999999999999999999999999999999988876653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.45  E-value=0.16  Score=42.09  Aligned_cols=74  Identities=15%  Similarity=-0.033  Sum_probs=53.1

Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCc
Q 045605           66 IKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPA  145 (164)
Q Consensus        66 ~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~  145 (164)
                      .++.+-+.+|.++.++.....+..                      -++++.+.--+++|+...+..+..+.+..++ |+
T Consensus       267 ~g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~  323 (382)
T TIGR00902       267 CSARDLLLISAIACVGRWAIIGAI----------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG  323 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhH----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH
Confidence            344444566777776665544333                      1445556656999999999999999999988 99


Q ss_pred             hhHHHHHHHHH-HHHhhc
Q 045605          146 SMRNLGIALYL-TIIGIG  162 (164)
Q Consensus       146 ~mks~~~~~~~-l~~~~g  162 (164)
                      +.++..++++. ++.++|
T Consensus       324 ~~~~~~q~~~~~~~~g~g  341 (382)
T TIGR00902       324 SEIAKLQALYNALAMGGL  341 (382)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            99999999975 344433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.03  E-value=0.056  Score=46.85  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=76.8

Q ss_pred             CcccCCccchhhhHHHHH-------HhC-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcch
Q 045605           41 NFRIPPASIYSLGAVANL-------LTG-NERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSM  112 (164)
Q Consensus        41 ~~~ip~~~~~~~~~~~ii-------~~~-~~~~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~  112 (164)
                      .+++.++....+.+.+++       +.+ ...+.....-|++|.++=+++++..+.++                      
T Consensus        62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~----------------------  119 (493)
T KOG1330|consen   62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN----------------------  119 (493)
T ss_pred             hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH----------------------
Confidence            466778877777777766       111 12223445567889888888887766553                      


Q ss_pred             hhhHHHH-HHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAP-QYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip-~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                       -+||+. .--+.|+||.-.+|..-.+..+..|+.-||.+.++|+++.-+|+
T Consensus       120 -~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs  170 (493)
T KOG1330|consen  120 -HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS  170 (493)
T ss_pred             -HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence             277775 67899999999999999999999999999999999999877764

>TIGR00901 2A0125 AmpG-related permease

Probab=94.11  E-value=0.54  Score=38.14  Aligned_cols=48  Identities=10%  Similarity=0.118  Sum_probs=41.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHh
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIG  160 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~  160 (164)
                      +.++++...++.++++.+..+....+..+.+|++.|+..+|+.....+
T Consensus       308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            445567778899999999999999999999999999999999876554

>PRK11663 regulatory protein UhpC; Provisional

Probab=93.52  E-value=1.3  Score=37.32  Aligned_cols=49  Identities=14%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++..+++.|+++....+.......+..|++-|+..+|++.....+|.
T Consensus       112 ~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~  160 (434)
T PRK11663        112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG  160 (434)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            4444557788999998889999999999999999999999987776653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.00  E-value=0.56  Score=37.02  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      -+.++.++.+++++.....+                      +.++.+..+++.++++....+.......+..|++.|+.
T Consensus       244 ~~~~~~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T cd06174         244 LLLIGLLLAALGLLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT  301 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHH
Confidence            45566666666665544331                      24667788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 045605          151 GIALYLTIIGIGS  163 (164)
Q Consensus       151 ~~~~~~l~~~~g~  163 (164)
                      .+|++.....+|+
T Consensus       302 ~~~~~~~~~~~~~  314 (352)
T cd06174         302 ASGLFNTFGSLGG  314 (352)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=92.68  E-value=1.1  Score=30.19  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .++.....++.+++.....+.......+..|++.|+..++++.....+|
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   99 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALG   99 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHH
Confidence            3455566788999999889999999999999999999999988776655

>TIGR00893 2A0114 d-galactonate transporter

Probab=92.58  E-value=1.2  Score=35.72  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  130 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLG  130 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHH
Confidence            45666777899999999999999999999999999999999988877665

>TIGR00891 2A0112 putative sialic acid transporter

Probab=92.42  E-value=1.4  Score=35.74  Aligned_cols=51  Identities=20%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|+++....+....+..+..|++.|+..++++....++|.
T Consensus        99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  149 (405)
T TIGR00891        99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA  149 (405)
T ss_pred             cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH
Confidence            345566678999999999999999999999999999999999888776663

>PRK03545 putative arabinose transporter; Provisional

Probab=92.33  E-value=0.89  Score=37.50  Aligned_cols=71  Identities=8%  Similarity=-0.047  Sum_probs=54.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605           70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN  149 (164)
Q Consensus        70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks  149 (164)
                      +-+.+|.++.+++.+..+..+                      +.++++...++.|+++....+.......+..|++-|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~  132 (390)
T PRK03545         75 KLLIGLFVLFIASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA  132 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Confidence            445566666666665544431                      4566666778999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 045605          150 LGIALYLTIIGIG  162 (164)
Q Consensus       150 ~~~~~~~l~~~~g  162 (164)
                      ..+|++....++|
T Consensus       133 ~~~g~~~~~~~~g  145 (390)
T PRK03545        133 QALSLLATGTALA  145 (390)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999988776665

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=92.28  E-value=0.96  Score=39.84  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHh
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIG  160 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~  160 (164)
                      +.+..++..++.|++.....+......-+.+|+++||..++++.....
T Consensus       306 ~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~  353 (524)
T PF05977_consen  306 SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFF  353 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence            445566788899999999999999999999999999999999876543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00900 2A0121 H+ Antiporter protein

Probab=92.07  E-value=0.88  Score=36.28  Aligned_cols=49  Identities=14%  Similarity=0.136  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .++.+...++.|++.....+.......+..|++.|+..+|++.....+|
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  349 (365)
T TIGR00900       301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAA  349 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4555667889999999999999999999999999999999998876654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.03  E-value=0.44  Score=42.81  Aligned_cols=50  Identities=16%  Similarity=0.067  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      ...++..-++.|+|+....+.+..+..+..|++.|+...|++.....+|.
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~  221 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGP  221 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhh
Confidence            44455677999999999999999999999999999999999988877663

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=91.83  E-value=0.68  Score=38.68  Aligned_cols=46  Identities=11%  Similarity=-0.007  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .+...++.++++....|.......+.+|++.|+..+|+.....++|
T Consensus       300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  345 (400)
T PRK11646        300 LFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALG  345 (400)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHH
Confidence            3334467788999999999999999999999999999988776655

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=91.75  E-value=1.1  Score=36.89  Aligned_cols=50  Identities=26%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      .++++...++.|+++....+....+..+..|++.|+..++++.....+|.
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  176 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI  176 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence            35667788999999999999999999999999999999999887776653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=91.64  E-value=0.8  Score=37.69  Aligned_cols=49  Identities=16%  Similarity=0.266  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .++.+...++.|+++....+......-+.+|++.|+...|++.....+|
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA  350 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3455567788899998888887777888899999999999998776655

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=91.57  E-value=1.4  Score=35.30  Aligned_cols=69  Identities=20%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHH
Q 045605           72 IGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLG  151 (164)
Q Consensus        72 i~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~  151 (164)
                      +.+|.++.+++.+..+...                      +.+.+....++.|+++....+.......+..|++ |+..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  127 (377)
T TIGR00890        71 AMLGGILYGLGFTFYAIAD----------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-RGLA  127 (377)
T ss_pred             hHHhHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-cHHH
Confidence            4566777777665554442                      3344555677999999888888777777777764 8999


Q ss_pred             HHHHHHHHhhcC
Q 045605          152 IALYLTIIGIGS  163 (164)
Q Consensus       152 ~~~~~l~~~~g~  163 (164)
                      ++++....++|.
T Consensus       128 ~~~~~~~~~~g~  139 (377)
T TIGR00890       128 SGIIIGGYGLGS  139 (377)
T ss_pred             HHHHHHhcchhH
Confidence            999988776653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.47  E-value=0.91  Score=39.06  Aligned_cols=71  Identities=18%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh-HH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM-RN  149 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m-ks  149 (164)
                      -|-+|+++..++-++-++.+                      |..-++..-.++|+|..+.++.|++...+.-|+.- ||
T Consensus       138 pm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~  195 (464)
T KOG3764|consen  138 PMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG  195 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence            35667777776665555543                      22346777899999999999999999999999887 59


Q ss_pred             HHHHHHHHHHhhcC
Q 045605          150 LGIALYLTIIGIGS  163 (164)
Q Consensus       150 ~~~~~~~l~~~~g~  163 (164)
                      ..||+-+-..++|.
T Consensus       196 ~vmGialgfislG~  209 (464)
T KOG3764|consen  196 SVMGIALGFISLGV  209 (464)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999998888875

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=91.24  E-value=0.35  Score=41.20  Aligned_cols=79  Identities=10%  Similarity=-0.074  Sum_probs=57.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh
Q 045605           68 ILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM  147 (164)
Q Consensus        68 ~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m  147 (164)
                      +.+-+.+++++.+++....+..-.         +        ..-+.+.++...++.|++|.+..|.......+..|++.
T Consensus        93 ~r~~l~~~~~~~~~~~~~~~~~~~---------~--------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~  155 (467)
T PRK09556         93 TKQFLPFLLILSAICMLGFGASLG---------S--------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK  155 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHh---------c--------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc
Confidence            334456777777766654443210         0        11245666777889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 045605          148 RNLGIALYLTIIGIGS  163 (164)
Q Consensus       148 ks~~~~~~~l~~~~g~  163 (164)
                      |+..+|++.....+|.
T Consensus       156 rg~a~gi~~~~~~lG~  171 (467)
T PRK09556        156 RGRFLGFWNISHNLGG  171 (467)
T ss_pred             eeeeEEeeecccchhh
Confidence            9999999887766653

>TIGR00889 2A0110 nucleoside transporter

Probab=91.18  E-value=2.8  Score=35.38  Aligned_cols=46  Identities=20%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH-HHHhhc
Q 045605          117 LAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL-TIIGIG  162 (164)
Q Consensus       117 lip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~-l~~~~g  162 (164)
                      ++...++.|+++.+..+....+..+.+|++.|+..+|+.. ...++|
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg  357 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFG  357 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhH
Confidence            4455788999999999999999999999999999999996 445554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=91.11  E-value=2.5  Score=34.77  Aligned_cols=50  Identities=16%  Similarity=0.070  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++..+..+.......+..|++-|+...+++.....+|
T Consensus        90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~  139 (392)
T PRK10473         90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII  139 (392)
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            34556667889999999999999999999999999999999887665443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=91.09  E-value=1.2  Score=36.08  Aligned_cols=50  Identities=10%  Similarity=0.032  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....+....+..+..|++.|+..++++.....+|
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  141 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALA  141 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            34556677889999999999999999999999999999999887776654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=90.90  E-value=2.1  Score=35.67  Aligned_cols=47  Identities=13%  Similarity=0.017  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      ......++.|++.....+....+..+..|++.|+..+|++.....+|
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  360 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTG  360 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhh
Confidence            34445677888888888888888889999999999999987766554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=90.67  E-value=2.3  Score=35.42  Aligned_cols=71  Identities=13%  Similarity=0.006  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605           70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN  149 (164)
Q Consensus        70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks  149 (164)
                      +-+.+++++.+++.+..+..                      -+.++++...++.|++.....|.......+..|++-|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~  143 (394)
T PRK10213         86 YVVILFAVLLTLSCLLVSFA----------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP  143 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHH
Confidence            34456777776665554332                      24567777789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 045605          150 LGIALYLTIIGIG  162 (164)
Q Consensus       150 ~~~~~~~l~~~~g  162 (164)
                      ...+++....++|
T Consensus       144 ~a~~~~~~~~~~g  156 (394)
T PRK10213        144 KALSVIFGAVSIA  156 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876655

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=90.35  E-value=1.9  Score=35.45  Aligned_cols=49  Identities=14%  Similarity=0.184  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .++.+...++.|++.....+.......+..|++.|+..+|++.....+|
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLS  350 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3455566788999998888887777778999999999999987765554

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=90.30  E-value=2.2  Score=35.95  Aligned_cols=51  Identities=14%  Similarity=0.081  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|++.....+.......+..|++.|+..++++.....+|.
T Consensus        89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  139 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP  139 (485)
T ss_pred             CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence            455667788999999999999999999999999999999999988776653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=90.27  E-value=1.8  Score=36.08  Aligned_cols=50  Identities=12%  Similarity=0.032  Sum_probs=42.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.+|++...++.|+++.+..|.......+.+|++.|+..+|+......+|
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  147 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG  147 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            45677778899999999999998899999999999999999987776655

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=90.24  E-value=2.9  Score=34.44  Aligned_cols=43  Identities=14%  Similarity=-0.010  Sum_probs=34.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL  156 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~  156 (164)
                      +.++.+..-++.|+++.+..+.......++.|+++ +..+++..
T Consensus       292 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  334 (382)
T PRK11128        292 ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEV-IRLQALYS  334 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhh-HHHHHHHH
Confidence            44556667788999999999999999988866665 77788765

>PRK12307 putative sialic acid transporter; Provisional

Probab=90.03  E-value=2  Score=35.63  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|+++....+....+..+..|++.|+..++++....++|.
T Consensus       105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~  155 (426)
T PRK12307        105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGN  155 (426)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHH
Confidence            345667778899999999999999999999999999999999888776653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=89.82  E-value=1.4  Score=37.56  Aligned_cols=51  Identities=16%  Similarity=-0.027  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|++.....+.......+..|++.++..+|++.....+|+
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~  382 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV  382 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH
Confidence            345556667788888888888899999999999999999999988877664

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=89.75  E-value=3.2  Score=34.87  Aligned_cols=50  Identities=10%  Similarity=-0.062  Sum_probs=38.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++..-++.|+++.+..+.......+..|++.++..++++.....+|
T Consensus       103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (413)
T PRK15403        103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVA  152 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            45667777889999998877777766767789988888888777765544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=89.60  E-value=1.1  Score=37.88  Aligned_cols=51  Identities=12%  Similarity=0.083  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|++|....|.......+..|++.|+..+|++.....+|.
T Consensus       130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  180 (465)
T TIGR00894       130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGT  180 (465)
T ss_pred             CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            346677888999999999999999999999999999999999988776653

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=89.45  E-value=1.6  Score=36.96  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHH-Hhhc
Q 045605          121 YLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTI-IGIG  162 (164)
Q Consensus       121 y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~-~~~g  162 (164)
                      -+++|+.=.+..+++..+..+.+|+++|+.+||++... .++|
T Consensus       308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg  350 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLG  350 (400)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence            45799999999999999999999999999999997653 4544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=89.02  E-value=2  Score=36.20  Aligned_cols=50  Identities=22%  Similarity=0.174  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .+.+++..-++.|++.....+....+..+..|++.|+..++++.....+|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G  168 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFG  168 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHH
Confidence            34556677799999999999999999999999999999999987766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=88.84  E-value=4.1  Score=34.34  Aligned_cols=51  Identities=22%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++.+...++.|+|..+..+....+..+.+|++.++..+++.....++|+
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~  143 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS  143 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            445566677899999999999999999889999989888888776666553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=88.74  E-value=2.7  Score=35.57  Aligned_cols=73  Identities=11%  Similarity=0.074  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHH
Q 045605           72 IGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLG  151 (164)
Q Consensus        72 i~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~  151 (164)
                      +.+|.++.+++.+..++...                  ..-+.++++...++.|+++....+.......+..|++.|+..
T Consensus        96 l~~~~~~~~i~~~~~~~~~~------------------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~  157 (452)
T PRK11273         96 LPAGLILAAAVMLFMGFVPW------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI  157 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhc------------------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHH
Confidence            45566666666665554420                  012345566677899999998888777788888999999999


Q ss_pred             HHHHHHHHhhc
Q 045605          152 IALYLTIIGIG  162 (164)
Q Consensus       152 ~~~~~l~~~~g  162 (164)
                      ++++.....+|
T Consensus       158 ~~~~~~~~~~g  168 (452)
T PRK11273        158 VSVWNCAHNVG  168 (452)
T ss_pred             HHHHHHHHHhh
Confidence            99988877665

>PRK03633 putative MFS family transporter protein; Provisional

Probab=88.68  E-value=3  Score=34.28  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....|.......+..|++-|+..++.+.....+|
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  142 (381)
T PRK03633         93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLG  142 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            34566677899999999999988888888899999999999987766554

>TIGR00895 2A0115 benzoate transport

Probab=88.49  E-value=0.88  Score=36.76  Aligned_cols=50  Identities=22%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....+.......+..|++.|+..+++......+|
T Consensus       104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  153 (398)
T TIGR00895       104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG  153 (398)
T ss_pred             chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence            34556677889999999999999999999999999999999887776655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=88.40  E-value=4.2  Score=32.35  Aligned_cols=51  Identities=14%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|+++.+..+....+..+..|++-|+...+++.....+|.
T Consensus        91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  141 (365)
T TIGR00900        91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY  141 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH
Confidence            556677788999999999999999999999999999999998888776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=88.33  E-value=3.6  Score=32.62  Aligned_cols=49  Identities=20%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      ++++...++.|+++....+....+..+..|++-|+..++++.....+|.
T Consensus        86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  134 (352)
T PF07690_consen   86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS  134 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh
Confidence            4677889999999999999999999999999999999999988877763

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=88.30  E-value=2.8  Score=34.50  Aligned_cols=50  Identities=22%  Similarity=0.194  Sum_probs=43.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus       102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  151 (406)
T PRK11551        102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG  151 (406)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            45667777899999999999999999999999999999999988766554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=88.24  E-value=1.6  Score=34.67  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +..|.+...++.|++..+..+.......+.+|++.++...|+.....++|.
T Consensus       298 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  348 (352)
T PF07690_consen  298 SPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGG  348 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            556777788899999999999999999999999999999999998877763

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00806 rfc RFC reduced folate carrier

Probab=88.06  E-value=3.8  Score=36.13  Aligned_cols=50  Identities=14%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      |.+.+...-++.|++|.... +...++++-.|++-|+.+.|++..+..+|.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~  163 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGV  163 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999 999999999999999999999998887764

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=87.94  E-value=3.5  Score=33.92  Aligned_cols=50  Identities=12%  Similarity=-0.011  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....+.......+..|++.|+..++++.....+|
T Consensus        90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  139 (382)
T PRK10091         90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVA  139 (382)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHH
Confidence            45667777899999999988888888888899999998888877655544

>PRK10054 putative transporter; Provisional

Probab=87.90  E-value=4.3  Score=33.77  Aligned_cols=39  Identities=10%  Similarity=0.007  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH
Q 045605          118 APQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL  156 (164)
Q Consensus       118 ip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~  156 (164)
                      +..-++.+++|....|.......+.+|+++++...+...
T Consensus       302 ~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~  340 (395)
T PRK10054        302 GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS  340 (395)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH
Confidence            345689999999999999999999999999998877443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=87.87  E-value=4.1  Score=31.99  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++.+...++.|+++.+..+....+..+..|++.|+..+++......+|.
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  136 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA  136 (352)
T ss_pred             cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence            345667778999999999999999999999999999999999887776653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=87.70  E-value=1.8  Score=41.15  Aligned_cols=50  Identities=16%  Similarity=0.026  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++.+..+++.|++..+..+.......+.+|++++|..+|++.+...+|
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~  382 (1140)
T PRK06814        333 HGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF  382 (1140)
T ss_pred             ccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence            55667778899999999999999999999999999999999988776654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=87.64  E-value=3.7  Score=33.32  Aligned_cols=48  Identities=10%  Similarity=0.038  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++...++.|++.....+.......+..|++.|+..++++.....+|
T Consensus        80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIA  127 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            445566788999999999999999999999999999999988766655

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=87.57  E-value=3.2  Score=34.91  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++.+...++.|++..+..+.......+..|++.++..+|++.....+|
T Consensus       347 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g  396 (485)
T TIGR00711       347 PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLG  396 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHH
Confidence            44555566788999999888877788888899999999999988776555

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=87.44  E-value=7.9  Score=33.27  Aligned_cols=50  Identities=18%  Similarity=0.088  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....+....+..+.+|++.|+..++++.....+|
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence            45677888899999999999999999999999999999999988776655

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=87.30  E-value=3.2  Score=34.95  Aligned_cols=49  Identities=12%  Similarity=0.045  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .+.+....++.|+++....+...+...+..|++.|+..++++.....+|
T Consensus       118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g  166 (438)
T TIGR00712       118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIG  166 (438)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhH
Confidence            3444556788899999888888889999999999999999988776655

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=87.04  E-value=2.8  Score=34.96  Aligned_cols=41  Identities=15%  Similarity=0.110  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH
Q 045605          114 VFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL  154 (164)
Q Consensus       114 ~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~  154 (164)
                      +++.+...++.+++.....+...++..+..|++.+++..+.
T Consensus       315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  355 (420)
T PRK09528        315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLV  355 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeee
Confidence            45667778888888888888888898999999999876543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=87.04  E-value=4.3  Score=38.37  Aligned_cols=50  Identities=14%  Similarity=0.215  Sum_probs=41.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++..+..+.......+.+|++.|+..+|+..+...+|
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg  370 (1146)
T PRK08633        321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVG  370 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHH
Confidence            44566677888999999999888899999999999999999887665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=85.18  E-value=5.8  Score=36.59  Aligned_cols=50  Identities=18%  Similarity=0.065  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....|....+..+.+|++.|+..++++....++|
T Consensus       254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG  303 (742)
T TIGR01299       254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG  303 (742)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            34666777899999999999999999999999999999988876665554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=85.14  E-value=6.8  Score=33.71  Aligned_cols=50  Identities=14%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhcc-CCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQ-VPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~-aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....|.......+. .|++.|+..+|++.....+|
T Consensus        93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g  143 (495)
T PRK14995         93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG  143 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            456677778999999999999888877666 47899999999988877665

>PRK03893 putative sialic acid transporter; Provisional

Probab=85.11  E-value=5.3  Score=33.88  Aligned_cols=51  Identities=20%  Similarity=0.252  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.++++...++.|++.....+.......+..|++.|+..++++.....+|+
T Consensus       107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  157 (496)
T PRK03893        107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA  157 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            446677778999999999999999999999999999999999988777664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=84.89  E-value=0.88  Score=36.42  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++.+..+.......+..|++.|+..++++.....+|
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  131 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG  131 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhH
Confidence            44556667889999999999999999999999999998888776655544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=84.75  E-value=6.4  Score=32.68  Aligned_cols=50  Identities=22%  Similarity=0.163  Sum_probs=41.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +..+++...++.|++|.. .+.......+..|++.|+.+++++.....+|.
T Consensus        78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~  127 (368)
T TIGR00903        78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGI  127 (368)
T ss_pred             cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            677888889999999986 45555566788999999999999998887764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=84.60  E-value=5  Score=37.00  Aligned_cols=48  Identities=8%  Similarity=0.071  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          116 CLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       116 wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +++...++.++......+....+..+..|.+.|+..+|+......+|.
T Consensus       650 ~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGa  697 (742)
T TIGR01299       650 AMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAA  697 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            344445566777766777777888888999999999999988877764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00898 2A0119 cation transport protein

Probab=84.47  E-value=3.8  Score=34.96  Aligned_cols=50  Identities=18%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....+....+..+..|++.|+...+++....++|
T Consensus       179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  228 (505)
T TIGR00898       179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG  228 (505)
T ss_pred             cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence            45667778899999999999999999999999999999999987776665

>PRK10133 L-fucose transporter; Provisional

Probab=84.22  E-value=18  Score=30.75  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=37.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|++.....+....+..+..|++.|...++++....++|
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G  165 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFG  165 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHH
Confidence            45667778899999999999999999888888887765555554444433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=84.09  E-value=11  Score=30.24  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      -+.+|.++.+++.+..+...                     .+.++++...++.|+++... +.......+..|++-|+.
T Consensus        69 ~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~  126 (366)
T TIGR00886        69 TTTLSLLLLAIPCLWAGLAV---------------------QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGT  126 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhH
Confidence            35567777766665544431                     04455666788889987765 456788889999999999


Q ss_pred             HHHHHHHH
Q 045605          151 GIALYLTI  158 (164)
Q Consensus       151 ~~~~~~l~  158 (164)
                      .++++...
T Consensus       127 ~~~~~~~~  134 (366)
T TIGR00886       127 ALGLAAGW  134 (366)
T ss_pred             HHHHHHHH
Confidence            99987733

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=83.87  E-value=4.9  Score=33.04  Aligned_cols=51  Identities=18%  Similarity=0.058  Sum_probs=42.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      .+.++++...++.|+++....+.......+..|++.|+..++++.....+|
T Consensus       110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  160 (399)
T PRK05122        110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGA  160 (399)
T ss_pred             hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHH
Confidence            356677788899999999999999999999999999999998876654443

>PRK03699 putative transporter; Provisional

Probab=83.42  E-value=5  Score=33.15  Aligned_cols=50  Identities=10%  Similarity=0.060  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....+.......+..|++.|+..++......++|
T Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  143 (394)
T PRK03699         94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMA  143 (394)
T ss_pred             hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            34556677889999999888888888889999999999888765554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=83.34  E-value=17  Score=31.16  Aligned_cols=112  Identities=19%  Similarity=0.196  Sum_probs=74.9

Q ss_pred             HHhHhcccCCCCcccCCccchhhhHHHHH-----------HhCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045605           30 QGATMNRKVGNNFRIPPASIYSLGAVANL-----------LTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVP   98 (164)
Q Consensus        30 q~~~~d~~i~~~~~ip~~~~~~~~~~~ii-----------~~~~~~~~s~l~ki~iG~~l~~ls~~~~~~ve~~r~~~~~   98 (164)
                      |+--++..=+.-|..|++....+|.+.-.           +..++.++....+  +|...+++++..-.+..        
T Consensus       227 QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~--~G~~~~~~~f~lii~a~--------  296 (403)
T PF03209_consen  227 QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAA--LGCLLGALAFALIILAG--------  296 (403)
T ss_pred             hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHHHHHHHHH--------
Confidence            44444443333577899988888887643           2223333333333  56666666654432221        


Q ss_pred             ccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605           99 KEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus        99 ~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                         ..        -+.+-+.+.-+++|++--+..++.+...-+.+++...++-+|+|-.+-+++
T Consensus       297 ---~~--------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A  349 (403)
T PF03209_consen  297 ---PL--------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA  349 (403)
T ss_pred             ---hc--------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence               00        134556778899999999999999999999999999999999999876654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=83.30  E-value=4.6  Score=34.64  Aligned_cols=79  Identities=11%  Similarity=-0.040  Sum_probs=54.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605           70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN  149 (164)
Q Consensus        70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks  149 (164)
                      +-+.+++++.+++.+..++....        .      .-....+.+++..-++.|+++....+++..+..+..|++.|+
T Consensus        88 ~~l~~~~~l~~i~~~~~a~~~~~--------~------~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg  153 (490)
T PRK10642         88 KILAITIVIMSISTFCIGLIPSY--------A------TIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG  153 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccH--------H------HHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc
Confidence            34566777777766665554210        0      000112234677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 045605          150 LGIALYLTIIGIG  162 (164)
Q Consensus       150 ~~~~~~~l~~~~g  162 (164)
                      ...+++.....+|
T Consensus       154 ~~~~~~~~~~~~G  166 (490)
T PRK10642        154 FMGSWLDFGSIAG  166 (490)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988887554433

>TIGR00901 2A0125 AmpG-related permease

Probab=83.13  E-value=5.7  Score=32.09  Aligned_cols=51  Identities=12%  Similarity=0.077  Sum_probs=42.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      +.+++...+++.+..-.+..+....+..+.+|++-|+...++......+|.
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM  132 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH
Confidence            556666778888898999999999999999999999999998777666653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=82.81  E-value=6.3  Score=33.89  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          115 FCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       115 ~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      ++.....++.|++-.+..+.......+.+|++.++...+++.+...+|
T Consensus       352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG  399 (495)
T PRK14995        352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELG  399 (495)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHH
Confidence            444566788899999999888888999999999999999988776555

>TIGR00893 2A0114 d-galactonate transporter

Probab=81.91  E-value=18  Score=28.76  Aligned_cols=42  Identities=14%  Similarity=-0.006  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhcC
Q 045605          122 LILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGS  163 (164)
Q Consensus       122 ~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g~  163 (164)
                      .+.+.......+.......+..|++.|+..+|+......+|+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~  360 (399)
T TIGR00893       319 VALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG  360 (399)
T ss_pred             HHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence            333444444788899999999999999999999988877664

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=80.73  E-value=3.2  Score=37.08  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHH
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLT  157 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l  157 (164)
                      ++|-.+|.-++.|+--..+..+..+++...+|+++|..++|+.-.
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g  502 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQG  502 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHH
Confidence            557777889999999999999999999999999999999998754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=80.31  E-value=6.5  Score=32.59  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      =+..|+.+.+++.+..+...                      +.++++..-++.|+++....+...+...+..| +.|+.
T Consensus        76 ~l~~~~~l~~~~~~~~~~a~----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~  132 (393)
T PRK09705         76 SVAISLLLIAVGALMRELYP----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPL  132 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHCc----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchh
Confidence            35667777777776655442                      23445667889999999999999998888887 56899


Q ss_pred             HHHHHHHHHhh
Q 045605          151 GIALYLTIIGI  161 (164)
Q Consensus       151 ~~~~~~l~~~~  161 (164)
                      ++|++......
T Consensus       133 ~~g~~~~~~~~  143 (393)
T PRK09705        133 VMGLWSAALMG  143 (393)
T ss_pred             HHHHHHHHHHH
Confidence            99998765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2xut_A	524	Proton/peptide symporter family protein; transport	6e-22

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 90.1 bits (224), Expect = 6e-22
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 30/177 (16%)

Query: 1   KLVLNTIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVA---- 56
           + VL  + ++     F     Q +++ + Q   M           PA + +L  +     
Sbjct: 296 RSVLRILVLFALVTPFWSLFDQKASTWILQANDMV----KPQWFEPAMMQALNPLLVMLL 351

Query: 57  ---------NLLTGNERGIKILQRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKR 107
                      +      +  L+++G G+  + L+  V   ++           +     
Sbjct: 352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQ-----------LMMDGG 400

Query: 108 GPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIGSY 164
             LS+  F     Y +L  G+        E+ Y+Q P +M+   ++ +   + +G+ 
Sbjct: 401 SALSI--FWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2xut_A	524	Proton/peptide symporter family protein; transport	98.75
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	94.24
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	94.04
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	93.43
2xut_A	524	Proton/peptide symporter family protein; transport	87.19
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	86.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	80.84

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.75  E-value=1.7e-09  Score=90.79  Aligned_cols=141  Identities=17%  Similarity=0.288  Sum_probs=102.1

Q ss_pred             ehhHHhhHHHHHHHhhCcchHHHHHHhHhcccCCCCcccCCccchhhhHHHHH---------H----hCCCCCCCchhhh
Q 045605            6 TIPIWVTSLTFGISVAQASTSSVKQGATMNRKVGNNFRIPPASIYSLGAVANL---------L----TGNERGIKILQRI   72 (164)
Q Consensus         6 ~lpi~~~~i~f~~~~~Q~~s~~~~q~~~~d~~i~~~~~ip~~~~~~~~~~~ii---------~----~~~~~~~s~l~ki   72 (164)
                      .++++....+++..+.|..+.+..+...+|.+.   + ++.+.+..++.+..+         .    +|+++++++.+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (524)
T 2xut_A          301 ILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKM  376 (524)
T ss_dssp             HHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHH
Confidence            567777778888889998888877776665432   2 456666666554433         1    3444456778889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605           73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI  152 (164)
Q Consensus        73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~  152 (164)
                      .+|+++.+++++..+..+..+.             ...+.+.+|+++.+++.|+++.+..+...++..+.+|++.|+..+
T Consensus       377 ~~g~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  443 (524)
T 2xut_A          377 GAGIAITGLSWIVVGTIQLMMD-------------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIM  443 (524)
T ss_dssp             HTHHHHHHHHHHTTTTTTTTTT-------------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-------------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHH
Confidence            9999999888877655432110             113467889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 045605          153 ALYLTIIGIGS  163 (164)
Q Consensus       153 ~~~~l~~~~g~  163 (164)
                      |++.....+|+
T Consensus       444 g~~~~~~~~g~  454 (524)
T 2xut_A          444 SFWTLSVTVGN  454 (524)
T ss_dssp             HHHGGGHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.37  E-value=1.3e-06  Score=72.38  Aligned_cols=142  Identities=13%  Similarity=0.140  Sum_probs=104.3

Q ss_pred             eeehhHHhhHHHHHHHhhCcchHHHHHHhH-hcccCCCCcccCCccchhhhHHHHH---------HhCC-CCCCCchhhh
Q 045605            4 LNTIPIWVTSLTFGISVAQASTSSVKQGAT-MNRKVGNNFRIPPASIYSLGAVANL---------LTGN-ERGIKILQRI   72 (164)
Q Consensus         4 ~~~lpi~~~~i~f~~~~~Q~~s~~~~q~~~-~d~~i~~~~~ip~~~~~~~~~~~ii---------~~~~-~~~~s~l~ki   72 (164)
                      .+.+++++...+++..+.+..+....+..+ .+.+     ..+.+.+..++.+..+         .+|. ++.+....++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~  357 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF  357 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence            446788888899999999888876554433 2322     1566677766665544         3343 3445678899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605           73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI  152 (164)
Q Consensus        73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~  152 (164)
                      .+|+++.+++++..+......       +      ...+.+.+|+++.+++.++++.+..+....+..+..|++.|+.++
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  424 (491)
T 4aps_A          358 AVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM  424 (491)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence            999999999988776664321       1      123467889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 045605          153 ALYLTIIGIGS  163 (164)
Q Consensus       153 ~~~~l~~~~g~  163 (164)
                      |++.....+|+
T Consensus       425 g~~~~~~~~g~  435 (491)
T 4aps_A          425 SMWFLSSSVGS  435 (491)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988777664

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=94.24  E-value=0.48  Score=37.13  Aligned_cols=68  Identities=19%  Similarity=0.076  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHH
Q 045605           73 GIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGI  152 (164)
Q Consensus        73 ~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~  152 (164)
                      .+|.++.+++.+..+...                      +.++++...++.|+++....+....+..+..|++.|+..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (375)
T 2gfp_A           69 LVGMSIFMLATLVAVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHAN  126 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHH
T ss_pred             HHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHH
Confidence            466666666665554431                      4566777889999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 045605          153 ALYLTIIGIG  162 (164)
Q Consensus       153 ~~~~l~~~~g  162 (164)
                      +++....++|
T Consensus       127 ~~~~~~~~~g  136 (375)
T 2gfp_A          127 SLLNMGILVS  136 (375)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988877765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=94.04  E-value=0.83  Score=36.33  Aligned_cols=75  Identities=16%  Similarity=0.120  Sum_probs=58.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHH
Q 045605           70 QRIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRN  149 (164)
Q Consensus        70 ~ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks  149 (164)
                      +-+.+|.++.+++.+..+....                   .-+.++++...++.|+++....+....+..+..|++.|+
T Consensus        92 ~~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~  152 (438)
T 3o7q_A           92 AGIITGLFLYALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH  152 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH
Confidence            3356677777777665533210                   125577788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 045605          150 LGIALYLTIIGIGS  163 (164)
Q Consensus       150 ~~~~~~~l~~~~g~  163 (164)
                      ..++++....++|.
T Consensus       153 ~~~~~~~~~~~~g~  166 (438)
T 3o7q_A          153 FRLNLAQTFNSFGA  166 (438)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888877663

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=93.43  E-value=0.31  Score=38.97  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      =+.+|.++.+++.+..+.....                  .-+.++++...++.|+++....+....+..+..|++.|+.
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  155 (451)
T 1pw4_A           94 FLPAGLILAAAVMLFMGFVPWA------------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  155 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHH------------------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhc------------------cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhH
Confidence            3456777777776665542100                  1245677788999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 045605          151 GIALYLTIIGIGS  163 (164)
Q Consensus       151 ~~~~~~l~~~~g~  163 (164)
                      .++++....++|.
T Consensus       156 ~~~~~~~~~~~g~  168 (451)
T 1pw4_A          156 IVSVWNCAHNVGG  168 (451)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=87.19  E-value=2.3  Score=34.85  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHH---HHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIAL---YLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~---~~l~~~~g  162 (164)
                      +.++++...++.|+++....+....+..+..|++.|+...+.   +.....+|
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g  160 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG  160 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence            456677788999999999999999999999999999766665   55555444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=86.37  E-value=1.7  Score=35.24  Aligned_cols=50  Identities=16%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchh--HHHHHHHHHHHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASM--RNLGIALYLTIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~m--ks~~~~~~~l~~~~g  162 (164)
                      +.++++...++.|+++....+....+..+..|++.  |+...+++.....+|
T Consensus       107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  158 (491)
T 4aps_A          107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLG  158 (491)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHH
Confidence            45667778899999999999999999999999988  777888777766655

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=80.84  E-value=3.1  Score=33.57  Aligned_cols=51  Identities=22%  Similarity=0.150  Sum_probs=45.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHHhhc
Q 045605          112 MIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTIIGIG  162 (164)
Q Consensus       112 ~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~~~g  162 (164)
                      -+.+.++..-++.|+++....+.+..+..+.+|++.|+...+++.....+|
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            356677888999999999999999999999999999999999988776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	92.74
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	89.57
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	80.09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.12  Score=39.12  Aligned_cols=75  Identities=11%  Similarity=0.060  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcchhhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHH
Q 045605           71 RIGIGMGFSVLAMTVAAFVESKRLKIVPKEIIHEGKRGPLSMIVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNL  150 (164)
Q Consensus        71 ki~iG~~l~~ls~~~~~~ve~~r~~~~~~~g~~~~~~~~~~~s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~  150 (164)
                      -+.+|+++.+++.+..+.+..                  ...+.++++...++.|+++....+....+..+..|++-|+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~  152 (447)
T d1pw4a_          91 FLPAGLILAAAVMLFMGFVPW------------------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  152 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHH------------------HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred             HHHHHHHHHHHHHhhccccch------------------hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccc
Confidence            345778888777766655431                  12356778888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 045605          151 GIALYLTIIGIGS  163 (164)
Q Consensus       151 ~~~~~~l~~~~g~  163 (164)
                      .++++.....+|.
T Consensus       153 ~~~~~~~~~~~g~  165 (447)
T d1pw4a_         153 IVSVWNCAHNVGG  165 (447)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cccccccccchhh
Confidence            9999988877663

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.31  Score=35.56  Aligned_cols=50  Identities=12%  Similarity=0.026  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHH-HHHhhc
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYL-TIIGIG  162 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~-l~~~~g  162 (164)
                      +.++.+...++.+++..+..+....+..+..|++.|+...|+.. +..++|
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            45677778899999999999999999999999999999999753 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=80.09  E-value=2.6  Score=31.16  Aligned_cols=47  Identities=4%  Similarity=-0.233  Sum_probs=38.4

Q ss_pred             hhhHHHHHHHHHHHHHHhhhhhhHHHhhccCCchhHHHHHHHHHHHH
Q 045605          113 IVFCLAPQYLILGSGDGFTLVGLQEYFYAQVPASMRNLGIALYLTII  159 (164)
Q Consensus       113 s~~wlip~y~l~~~~E~~~~~~~le~~~~~aP~~mks~~~~~~~l~~  159 (164)
                      +.++.+...++.|++.....+.......+..|++.|+..+|+.....
T Consensus       342 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  388 (447)
T d1pw4a_         342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  388 (447)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            45566667788888888888888889999999999999999875543