Citrus Sinensis ID: 045630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
cHHHHHHHHHHcccccccEEEEEEcccEEEEEEEccccccccccccHHHHHccccccccccEEEEcccccEEEEEEcccccccccccEEEEEcccccccEEEEEcccccccccEEccHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEHHccccccccccccccEEEcccEEEEEEEccccEEEEEEEccccHHHHHHHHHHHcHHHHHcccccEEEEEEcccEEEEEEEccc
ccHHHHHHHHHcccccccccEEEcccccEEEEEEcccccccccccccccHHEccccccccEEEEEEccccEEEEEEccccccccccEEEEEEccccccccEEEEcccHccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHcHHHHEEEEEEcccccccccccccccccccccEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEccccc
IRALASILKYSQHYDITAYETKVISGQYGfiaqlnyprhlkerpaefRVEKVYQMGQEEVLfqfeasedcevqfhlsapfdvenspsvvsinvspikyghvLLIPRVLECLLQRIDCVSFLLALYTaagagnphfrlgynslgafaTINHLHfqasymalpfpiqkaptrkiitsggcvkiselfnypvrglvfeggnslqdLSNTVSDACVclqennipynvlIVDCGkriflfpqrya
IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDvenspsvvsinvspiKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
****ASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFP****
**A*ASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERP***********GQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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IRALASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
Q8RWE8 442 GDP-L-galactose phosphory yes no 0.95 0.515 0.686 4e-92
Q9FLP9 431 GDP-L-galactose phosphory no no 0.95 0.529 0.673 7e-89
Q6ZNW5385 GDP-D-glucose phosphoryla yes no 0.866 0.540 0.304 9e-22
Q3TLS3386 GDP-D-glucose phosphoryla yes no 0.862 0.536 0.303 3e-21
Q5E9T1385 GDP-D-glucose phosphoryla yes no 0.891 0.555 0.282 6e-21
Q08CA1343 GDP-D-glucose phosphoryla yes no 0.845 0.591 0.297 7e-20
Q8HXE4385 GDP-D-glucose phosphoryla N/A no 0.866 0.540 0.290 4e-19
Q0V9F1399 GDP-D-glucose phosphoryla yes no 0.891 0.536 0.257 2e-16
A8E5Y3399 GDP-D-glucose phosphoryla N/A no 0.875 0.526 0.246 7e-15
Q5ZR76 482 GDP-D-glucose phosphoryla yes no 0.554 0.275 0.283 2e-07
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  337 bits (864), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/239 (68%), Positives = 194/239 (81%), Gaps = 11/239 (4%)

Query: 13  HYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQ-----------MGQEEVL 61
            YD+TA ETKVI G+YGF+AQLN  RHLK+RP EFRV+KV Q           +GQEE+L
Sbjct: 88  RYDVTACETKVIPGKYGFVAQLNEGRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELL 147

Query: 62  FQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFL 121
           FQFEA ED +VQF    P D ENSPSVV+INVSPI+YGHVLLIPRVL+CL QRID  S L
Sbjct: 148 FQFEAGEDAQVQFFPCMPIDPENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLL 207

Query: 122 LALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKI 181
           LA++ AA A NP+FRLGYNSLGAFATINHLHFQA Y+A+PFP++KAPT+KI T+   VKI
Sbjct: 208 LAVHMAAEAANPYFRLGYNSLGAFATINHLHFQAYYLAMPFPLEKAPTKKITTTVSGVKI 267

Query: 182 SELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA 240
           SEL +YPVR L+FEGG+S+Q+LS+TVSD CVCLQ NNIP+N+LI DCG++IFL PQ YA
Sbjct: 268 SELLSYPVRSLLFEGGSSMQELSDTVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYA 326
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Acts as a phosphorylase rather than as a transferase. Uses preferentially GDP-L-galactose and GDP-D-glucose as substrates. Lower activity with GDP-L-fucose, very low activity with GDP-D-mannose, and no activity with UDP-D-glucose, UDP-D-galactose or ADP-D-glucose. Highly specific for inorganic phosphate as the guanylyl acceptor.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 9
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2 Back     alignment and function description
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2 Back     alignment and function description
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2 SV=1 Back     alignment and function description
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZR76|GDPP1_CAEEL GDP-D-glucose phosphorylase 1 OS=Caenorhabditis elegans GN=gdpgp1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
319739581 455 putative GDP-L-galactose-pyrophosphatase 0.95 0.501 0.803 1e-105
224056351 453 predicted protein [Populus trichocarpa] 0.95 0.503 0.748 3e-97
196174885 445 GDP-L-galactose phosphorylase [Malpighia 0.95 0.512 0.744 5e-97
255577159 408 conserved hypothetical protein [Ricinus 0.95 0.558 0.740 7e-97
145408226 450 VTC2-like protein [Actinidia chinensis] 0.95 0.506 0.748 4e-96
255579015 453 conserved hypothetical protein [Ricinus 0.95 0.503 0.732 6e-96
304266448 445 GDP-L-galactose guanyltransferase [Rosa 0.95 0.512 0.740 9e-96
225380880 446 VTC2-like protein [Malus x domestica] 0.95 0.511 0.740 3e-95
284437902 450 GDP-L-galactose phosphorylase [Actinidia 0.95 0.506 0.736 5e-95
359806406 436 uncharacterized protein LOC100806541 [Gl 0.95 0.522 0.711 2e-93
>gi|319739581|gb|ADV59925.1| putative GDP-L-galactose-pyrophosphatase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/239 (80%), Positives = 206/239 (86%), Gaps = 11/239 (4%)

Query: 13  HYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQ-----------MGQEEVL 61
            YD+TA ET+VI GQYGFIAQLN  RHLK+RP EFRV+KV Q           +GQEEVL
Sbjct: 98  RYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVL 157

Query: 62  FQFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFL 121
           FQFEASED EVQFH SAP DVENSPSVV+INVSPI+YGHVLLIPRVLECL QRID  SFL
Sbjct: 158 FQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFL 217

Query: 122 LALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKI 181
           LALY AA AGNP+FRLGYNSLGAFATINHLHFQA YMALPFPI+KAPT+KII++G  VKI
Sbjct: 218 LALYMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYMALPFPIEKAPTKKIISTGSGVKI 277

Query: 182 SELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA 240
           SEL NYPVRGLVFEGGNSL+DLSNTVSDAC+CLQENNIPYNVLI DCGKRIFL PQ YA
Sbjct: 278 SELLNYPVRGLVFEGGNSLEDLSNTVSDACICLQENNIPYNVLIADCGKRIFLLPQCYA 336

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056351|ref|XP_002298816.1| predicted protein [Populus trichocarpa] gi|118488785|gb|ABK96203.1| unknown [Populus trichocarpa] gi|222846074|gb|EEE83621.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|196174885|gb|ACG75920.1| GDP-L-galactose phosphorylase [Malpighia glabra] Back     alignment and taxonomy information
>gi|255577159|ref|XP_002529463.1| conserved hypothetical protein [Ricinus communis] gi|223531079|gb|EEF32929.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|145408226|gb|ABP65665.1| VTC2-like protein [Actinidia chinensis] Back     alignment and taxonomy information
>gi|255579015|ref|XP_002530359.1| conserved hypothetical protein [Ricinus communis] gi|223530106|gb|EEF32020.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|304266448|gb|ADM16545.1| GDP-L-galactose guanyltransferase [Rosa roxburghii] Back     alignment and taxonomy information
>gi|225380880|gb|ACN88681.1| VTC2-like protein [Malus x domestica] Back     alignment and taxonomy information
>gi|284437902|gb|ADB85572.1| GDP-L-galactose phosphorylase [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|359806406|ref|NP_001240984.1| uncharacterized protein LOC100806541 [Glycine max] gi|346229115|gb|AEO21431.1| GDP-L-galactose phosphorylase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
TAIR|locus:2116342 442 VTC2 "vitamin c defective 2" [ 0.945 0.513 0.634 1.3e-75
TAIR|locus:2161620 431 VTC5 "VITAMIN C DEFECTIVE 5" [ 0.945 0.526 0.626 1.1e-71
UNIPROTKB|Q6ZNW5385 GDPGP1 "GDP-D-glucose phosphor 0.862 0.537 0.292 7.2e-18
RGD|1560277385 Gdpgp1 "GDP-D-glucose phosphor 0.862 0.537 0.287 5.7e-17
UNIPROTKB|F1SJX4384 GDPGP1 "Uncharacterized protei 0.862 0.539 0.293 1.6e-16
MGI|MGI:2443429386 Gdpgp1 "GDP-D-glucose phosphor 0.862 0.536 0.277 1.6e-16
ZFIN|ZDB-GENE-060929-280343 zgc:153343 "zgc:153343" [Danio 0.85 0.594 0.254 2.7e-16
UNIPROTKB|J9NW04408 GDPGP1 "Uncharacterized protei 0.862 0.507 0.283 7e-16
UNIPROTKB|Q8HXE4385 GDPGP1 "GDP-D-glucose phosphor 0.862 0.537 0.283 9.7e-16
UNIPROTKB|Q5E9T1385 GDPGP1 "GDP-D-glucose phosphor 0.862 0.537 0.273 9.6e-15
TAIR|locus:2116342 VTC2 "vitamin c defective 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 151/238 (63%), Positives = 180/238 (75%)

Query:    14 YDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQ-----------MGQEEVLF 62
             YD+TA ETKVI G+YGF+AQLN  RHLK+RP EFRV+KV Q           +GQEE+LF
Sbjct:    89 YDVTACETKVIPGKYGFVAQLNEGRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLF 148

Query:    63 QFEASEDCEVQFHLSAPFDXXXXXXXXXXXXXXXKYGHVLLIPRVLECLLQRIDCVSFLL 122
             QFEA ED +VQF    P D               +YGHVLLIPRVL+CL QRID  S LL
Sbjct:   149 QFEAGEDAQVQFFPCMPIDPENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRIDHKSLLL 208

Query:   123 ALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKIITSGGCVKIS 182
             A++ AA A NP+FRLGYNSLGAFATINHLHFQA Y+A+PFP++KAPT+KI T+   VKIS
Sbjct:   209 AVHMAAEAANPYFRLGYNSLGAFATINHLHFQAYYLAMPFPLEKAPTKKITTTVSGVKIS 268

Query:   183 ELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA 240
             EL +YPVR L+FEGG+S+Q+LS+TVSD CVCLQ NNIP+N+LI DCG++IFL PQ YA
Sbjct:   269 ELLSYPVRSLLFEGGSSMQELSDTVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYA 326
GO:0005634 "nucleus" evidence=ISM
GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP
GO:0009408 "response to heat" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0008928 "mannose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010474 "glucose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010475 "galactose-1-phosphate guanylyltransferase (GDP) activity" evidence=IDA
GO:0010471 "GDP-galactose:mannose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010472 "GDP-galactose:glucose-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0010473 "GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity" evidence=IDA
GO:0080046 "quercetin 4'-O-glucosyltransferase activity" evidence=IDA
GO:0080048 "GDP-D-glucose phosphorylase activity" evidence=IDA
GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP
TAIR|locus:2161620 VTC5 "VITAMIN C DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZNW5 GDPGP1 "GDP-D-glucose phosphorylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1560277 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJX4 GDPGP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2443429 Gdpgp1 "GDP-D-glucose phosphorylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-280 zgc:153343 "zgc:153343" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW04 GDPGP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXE4 GDPGP1 "GDP-D-glucose phosphorylase 1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9T1 GDPGP1 "GDP-D-glucose phosphorylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
PLN03103403 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosp 1e-135
>gnl|CDD|215577 PLN03103, PLN03103, GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
 Score =  385 bits (990), Expect = e-135
 Identities = 165/240 (68%), Positives = 194/240 (80%), Gaps = 13/240 (5%)

Query: 14  YDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQ-----------MGQEEVLF 62
           YD+TA ETKVI G+YGFIAQLN  RHLK+RP EFRV+KV Q           +GQEEVLF
Sbjct: 87  YDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLF 146

Query: 63  QFEASEDCEVQFHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLL 122
           QFE  ED   +F  SAP D  NSP+VV+INVSPI+YGHVLL+PRVL+CL QRID  SFLL
Sbjct: 147 QFEQGEDDIPEFFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLL 206

Query: 123 ALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTRKII--TSGGCVK 180
           ALY AA A NP+FR+GYNSLGAFATINHLHFQA Y+A PFP++KAPT +I   T+   VK
Sbjct: 207 ALYMAAEANNPYFRVGYNSLGAFATINHLHFQAYYLANPFPVEKAPTVRIPHGTAKSGVK 266

Query: 181 ISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKRIFLFPQRYA 240
           +SEL +YPVRGLVFEGG+ L+DL+N+V+DAC+CLQ+NNIPYN+LI DCGKR+FLFPQ YA
Sbjct: 267 VSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNLLISDCGKRVFLFPQCYA 326

Length = 403

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 100.0
KOG2720 431 consensus Predicted hydrolase (HIT family) [Genera 100.0
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 98.4
PRK10687119 purine nucleoside phosphoramidase; Provisional 98.26
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 98.22
cd01276104 PKCI_related Protein Kinase C Interacting protein 98.18
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 98.04
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 98.01
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 97.78
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 97.59
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 97.58
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 97.57
KOG3275127 consensus Zinc-binding protein of the histidine tr 97.4
PRK05270 493 galactose-1-phosphate uridylyltransferase; Provisi 96.95
TIGR01239 489 galT_2 galactose-1-phosphate uridylyltransferase, 96.92
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 96.41
COG4468 503 GalT Galactose-1-phosphate uridyltransferase [Carb 96.24
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 95.97
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 95.82
PLN02643336 ADP-glucose phosphorylase 95.11
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 95.05
KOG4359166 consensus Protein kinase C inhibitor-like protein 93.18
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 88.28
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 87.12
KOG2476528 consensus Uncharacterized conserved protein [Funct 82.55
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.2e-86  Score=620.89  Aligned_cols=236  Identities=70%  Similarity=1.122  Sum_probs=226.9

Q ss_pred             hhhhcCcceeecCCeeEEEeccceeEEEEecCCCcccCCCceeecccccc-----------CCcceEEEEeeeCCCceee
Q 045630            5 ASILKYSQHYDITAYETKVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQ-----------MGQEEVLFQFEASEDCEVQ   73 (240)
Q Consensus         5 ~~~~~g~FrY~l~~~~~kvlpG~~~FvaQLN~~R~~krRp~~f~~~~v~q-----------v~~~EvlF~f~~~~~~~~~   73 (240)
                      .+|++|+|||||++|+||||||+|||+||||++|++||||++|++++++|           |+++||||+|++++++++.
T Consensus        78 dr~~~GlFrY~l~~~~tkvlpG~~gFvaQLN~~R~~krR~~~f~i~~v~qpFd~~kFNF~KV~~~EvLf~~~~~~~~~~~  157 (403)
T PLN03103         78 DRMARGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGKKFNFTKVGQEEVLFQFEQGEDDIPE  157 (403)
T ss_pred             HHHhcCCcccccccceeEEecCccceEEEecccchhccCCCccchhhccCCCCCCcccCCCCCCceeEEEEecCCCcccc
Confidence            47899999999999999999999999999999999999999999999988           9999999999999999999


Q ss_pred             eecCCCccCCCCCeEEEEeccCCCCCeEEEccccCcccccccChhHHHHHHHHHHccCCCceEEEecCCCCCCCcceeEE
Q 045630           74 FHLSAPFDVENSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAAGAGNPHFRLGYNSLGAFATINHLHF  153 (240)
Q Consensus        74 ~~~~~~~~~~~~~~~vlIN~sPIe~~H~LlvP~~~~~lpQ~it~~~l~la~~~~~~~~~p~frvgyNSlGA~AsVNHLHF  153 (240)
                      +.+++|++.++++++|+||+|||+|||+||||++.+|+||+||.+++++|+++|++++||+|||||||+||+||||||||
T Consensus       158 ~~~~~~~~~~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~~~l~la~~~a~~~~~p~frvgYNSlGA~ASvNHLHF  237 (403)
T PLN03103        158 FFPSAPIDASNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDPDSFLLALYMAAEANNPYFRVGYNSLGAFATINHLHF  237 (403)
T ss_pred             cccCCccccCCCccEEEEeCCCCccCeEEEcCCcccCCCeEecHHHHHHHHHHHHhcCCCcEEEEecCCccccCcceeee
Confidence            99999997678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCcccccccCCccee--eecCceEEEEecCCceeeEEEEeCCcHHHHHHHHHHHccccccCCCccEEEEEeCCEE
Q 045630          154 QASYMALPFPIQKAPTRKII--TSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQENNIPYNVLIVDCGKR  231 (240)
Q Consensus       154 qa~y~~~~lpvE~a~~~~l~--~~~~g~~v~~l~dyP~~~~vf~~~~~~~~l~~~V~~~~~~L~~~niphNl~it~~g~r  231 (240)
                      ||||++++||||++|++++.  ...+|+++|+|.|||++||+|+++++++++++.|+++|++|+++|||||||+|++|+|
T Consensus       238 Qa~yl~~~lPvE~ap~~~l~~~~~~~g~~vy~L~~yP~~~lvf~~~~~~~~l~~~v~~~~~~L~~~niP~NL~i~~~g~r  317 (403)
T PLN03103        238 QAYYLANPFPVEKAPTVRIPHGTAKSGVKVSELVDYPVRGLVFEGGSDLEDLANSVADACICLQDNNIPYNLLISDCGKR  317 (403)
T ss_pred             eecccCCCCccccCccccccccccCCCceEEEecCCCceEEEEEeCccHHHHHHHHHHHHHhhccCCcceEEEEEcCCeE
Confidence            99999999999999999983  3456789999999999999999877899999999999999999999999999999999


Q ss_pred             EEEeeeccC
Q 045630          232 IFLFPQRYA  240 (240)
Q Consensus       232 vflfPR~~~  240 (240)
                      |||||+|||
T Consensus       318 vflfP~Cy~  326 (403)
T PLN03103        318 VFLFPQCYA  326 (403)
T ss_pred             EEEeCchhh
Confidence            999999995

>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 72/253 (28%)

Query: 14  YDITAYETKVISG-QYGFIAQLNYPRHLKERPAEFRVEKVYQM---GQEEVLFQF-EASE 68
            D+      ++S  +   I        +  + A     +++      QEE++ +F E   
Sbjct: 36  KDVQDMPKSILSKEEIDHI--------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 69  DCEVQFHLSAPFDVE-NSPSVVSI----------NVSPI--KYGHVLLIPRVLECLLQRI 115
               +F L +P   E   PS+++           N + +  KY +V    R L+  L+  
Sbjct: 88  RINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NV---SR-LQPYLKLR 141

Query: 116 DCVSFL-----LALYTAAGAGNPHFRLGYNSLGAFATINHLHFQASYMALPFPIQKAPTR 170
             +  L     + +    G+G          +            A  + L + +Q     
Sbjct: 142 QALLELRPAKNVLIDGVLGSGK-------TWV------------ALDVCLSYKVQCKMDF 182

Query: 171 KI--ITSGGCVKISELFNYPVRGLVFEGGNSLQDLSNTVSDACVCLQEN--NIPYNVLIV 226
           KI  +    C     +               LQ L   +        ++  NI   +  +
Sbjct: 183 KIFWLNLKNCNSPETVLE------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 227 DCGKRIFLFPQRY 239
               R  L  + Y
Sbjct: 231 QAELRRLLKSKPY 243

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
3oj7_A117 Putative histidine triad family protein; hydrolase 98.45
4egu_A119 Histidine triad (HIT) protein; structural genomics 98.44
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 98.4
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 98.39
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 98.34
3r6f_A135 HIT family protein; structural genomics, seattle s 98.28
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 98.25
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 98.18
2eo4_A149 150AA long hypothetical histidine triad nucleotid 98.15
3imi_A147 HIT family protein; structural genomics, infectiou 98.12
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 98.08
3ksv_A149 Uncharacterized protein; HIT family, structural ge 98.06
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 98.04
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 98.01
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 98.0
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 97.77
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 97.71
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 97.55
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 97.25
3ohe_A137 Histidine triad (HIT) protein; structural genomics 97.09
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 97.09
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 97.02
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 96.83
3nrd_A135 Histidine triad (HIT) protein; structural genomics 96.16
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 94.87
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
Probab=98.45  E-value=5.1e-07  Score=70.13  Aligned_cols=72  Identities=21%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCCeEEEEeccCCCCCeEEEccccCcccccccCh-------hHHHHHHHHHHc-cCCCceEEEecCC-CCCCCcceeEEe
Q 045630           84 NSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDC-------VSFLLALYTAAG-AGNPHFRLGYNSL-GAFATINHLHFQ  154 (240)
Q Consensus        84 ~~~~~vlIN~sPIe~~H~LlvP~~~~~lpQ~it~-------~~l~la~~~~~~-~~~p~frvgyNSl-GA~AsVNHLHFq  154 (240)
                      ++...++.|.+|..+||+|+||...-.--.-+|.       +.+..+.++++. .. ++|++++|.. -|.+||.|+|+|
T Consensus        27 ~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~l~~~~~~~~~~~~~-~g~ni~~n~g~~agq~v~H~H~H  105 (117)
T 3oj7_A           27 DDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKECP-EGYRVVNNIGEDAGQTVKHIHFH  105 (117)
T ss_dssp             CSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTTHHHHHHHHHHHHHHHHHHCT-TCEEEECCCSTTTTCCSSSCCEE
T ss_pred             CCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEcCCCCCCeeeeEEEEE
Confidence            6678899999999999999999765322233332       234444444443 33 4999999865 677899999999


Q ss_pred             ee
Q 045630          155 AS  156 (240)
Q Consensus       155 a~  156 (240)
                      ..
T Consensus       106 ii  107 (117)
T 3oj7_A          106 IL  107 (117)
T ss_dssp             EE
T ss_pred             Ee
Confidence            98
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 98.6
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 98.46
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 98.44
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 98.37
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 98.34
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 97.58
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 97.1
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 96.97
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 95.6
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: NIT-FHIT fusion protein, C-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.60  E-value=6.5e-08  Score=78.12  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             CCCeEEEEeccCCCCCeEEEccccCcccccccChhHHHHHHHHHH--------ccCCCceEEEecCC-CCCCCcceeEEe
Q 045630           84 NSPSVVSINVSPIKYGHVLLIPRVLECLLQRIDCVSFLLALYTAA--------GAGNPHFRLGYNSL-GAFATINHLHFQ  154 (240)
Q Consensus        84 ~~~~~vlIN~sPIe~~H~LlvP~~~~~lpQ~it~~~l~la~~~~~--------~~~~p~frvgyNSl-GA~AsVNHLHFq  154 (240)
                      ++..+++.+.+|+.+||+|+||...-.--.-++.+.+.....++.        .....+|++++|+- .|..+|.|+|+|
T Consensus        35 de~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l~~~~~~v~~~l~~~~~~~g~ni~~n~G~~aGq~V~HlHiH  114 (160)
T d1emsa1          35 TPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIH  114 (160)
T ss_dssp             CSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSGGGTCCSSSCCEE
T ss_pred             CCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHHHHHHHHhhhhhhhccccceEEEecccCCCCCeEEeEEEEE
Confidence            566789999999999999999986543333455444333333222        23566999998865 778899999999


Q ss_pred             ee
Q 045630          155 AS  156 (240)
Q Consensus       155 a~  156 (240)
                      ..
T Consensus       115 II  116 (160)
T d1emsa1         115 IL  116 (160)
T ss_dssp             EE
T ss_pred             EE
Confidence            87
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure