Citrus Sinensis ID: 045634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
cccccccccccccccEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHcHHHHHHHHHcHHccccEEEEEEEEccccHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEcccccEEcccccEEEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccEEEEEccccHHHHHccccccHHHHHHHcccccccccccHHEEEEcccccccHHHHHHHHcccccccccccccEEEEEccEEEEccccccc
cccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHEHHHHccccHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHEEEEcEEEEEccccEEHHHHHHHc
masssssssltghskYKVFLSfrgedtrnGFTSHLAAALHRKQIQFfiddeelekgdeispaLFIAVETSDISVIILSKDYASSKWCLNELVNIldckkmngkivipvfyqvdpsdvrKQRRSFGEAFvhhennfpdKVQKWRDALTEasnlsgydsteSRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFsgrsriiitsrdkgvldkcgvnnmyevkglkYNKALELFCRKAFretncshdllELSEEVVrhadgnplALEVLANNNGKlmklisepniyNVLKISYDELNLEEKKTFLDIacfftgedidfvrrirddpssldtfvdKSLITIFYNELQMHDLLQEM
masssssssltghsKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEafvhhennfpdkVQKWRDALTEasnlsgydstesriKKRLQLMKVLIVLDDVHDEFTELKSLarrlqfsgrsriiitsrdkgvldkcgVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
MAsssssssLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
***************YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDV*****SFGEAFVHHENNFPDKVQKWRDAL**************RIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMH******
***************YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
************HSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
***********GHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
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MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPSSLDTFVDKSLITIFYNELQMHDLLQEM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q40392 1144 TMV resistance protein N N/A no 0.393 0.121 0.528 1e-36
O82500 1095 Putative disease resistan no no 0.419 0.135 0.470 1e-29
Q9FL92 1372 Probable WRKY transcripti no no 0.589 0.151 0.373 1e-29
O23530 1301 Protein SUPPRESSOR OF npr no no 0.416 0.112 0.44 2e-29
Q9FHE9354 Protein PHLOEM PROTEIN 2- no no 0.475 0.474 0.392 4e-27
Q9FH83 1288 Probable WRKY transcripti no no 0.592 0.162 0.369 6e-27
Q9FKN7 1613 Protein DA1-related 4 OS= no no 0.518 0.113 0.353 4e-22
Q9SYC9571 Vesicle-associated protei no no 0.538 0.332 0.275 7e-19
Q9C5Q9411 Protein PHLOEM PROTEIN 2- no no 0.379 0.326 0.374 2e-18
Q9FHE8392 Protein PHLOEM PROTEIN 2- no no 0.402 0.362 0.406 9e-18
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function desciption
 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 3/142 (2%)

Query: 16  YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVI 75
           Y VFLSFRGEDTR  FTSHL   L+ K I+ F DD+ LE G  I   L  A+E S  +++
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 76  ILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNF 135
           + S++YA+S+WCLNELV I++CK    + VIP+FY VDPS VR Q+ SF +AF  HE  +
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 136 PDKV---QKWRDALTEASNLSG 154
            D V   Q+WR AL EA+NL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 Back     alignment and function description
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function description
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 Back     alignment and function description
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
255547478 968 hypothetical protein RCOM_1077370 [Ricin 0.929 0.338 0.432 1e-64
147799796 1350 hypothetical protein VITISV_024109 [Viti 0.909 0.237 0.419 3e-60
224127750 1018 tir-nbs-lrr resistance protein [Populus 0.895 0.310 0.385 2e-58
449524388 820 PREDICTED: TMV resistance protein N-like 0.951 0.409 0.380 6e-58
8843806 1152 disease resistance protein-like [Arabido 0.983 0.301 0.372 1e-55
357499087 962 Disease resistance-like protein GS3-3 [M 0.892 0.327 0.383 1e-54
357449443 1179 TMV resistance protein N [Medicago trunc 0.456 0.136 0.601 4e-49
124360568 1208 TIR [Medicago truncatula] 0.450 0.131 0.602 2e-48
357449525 1128 TMV resistance protein N [Medicago trunc 0.461 0.144 0.578 2e-47
124359513 1230 TIR [Medicago truncatula] 0.461 0.132 0.578 3e-47
>gi|255547478|ref|XP_002514796.1| hypothetical protein RCOM_1077370 [Ricinus communis] gi|223545847|gb|EEF47350.1| hypothetical protein RCOM_1077370 [Ricinus communis] Back     alignment and taxonomy information
 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 217/370 (58%), Gaps = 42/370 (11%)

Query: 13  HSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDI 72
           H KY VFLSFRG DTRN FTSHL +AL R  I  FID   LE+G+ I  A+  A+E S I
Sbjct: 17  HVKYDVFLSFRGTDTRNNFTSHLYSALIRCGIITFIDTR-LERGEGIESAILKAIEESII 75

Query: 73  SVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHE 132
           SV+ILSK+YASS WCL+ELV I +C+   G+ +IPVFY VDP+++  Q  SFGEA   HE
Sbjct: 76  SVVILSKNYASSPWCLDELVKIFECRDKQGQKIIPVFYHVDPTELDNQTGSFGEALAKHE 135

Query: 133 NNFP----DKVQKWRDALTEASNLSGYDSTESRIKKRL------QLMK------------ 170
            +F     DKV  WR  L+ A+N++    T SR++  L      +++K            
Sbjct: 136 QDFNEIIMDKVPNWRIVLSRAANIAREVMTPSRVESELIEVVLKEILKHLTYDISYGFKN 195

Query: 171 -VLIVLDDVHDEFTELKSLARRLQFSGR-SRIIITSRDKGVLDKCGVNNMYEVKGLKYNK 228
            +LIVLD++ D++ +++ LA    + G  +RIIITSRDK V     V+ +YEV+ L  ++
Sbjct: 196 LILIVLDNI-DDYEQIELLAEEHTWFGEGNRIIITSRDKSVFQD-RVDGIYEVEALTEHE 253

Query: 229 ALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLMKLISEPNIYNVL 288
           AL LF   AFRE++   D +ELS+EV +              +  K +  I +  I N+L
Sbjct: 254 ALHLFRLFAFRESHSKRDHMELSKEVTQKE----------WRSKVKKLGRIPDKKIQNIL 303

Query: 289 KISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDPS-----SLDTFVDKSLITIFYNE 343
           K SYDEL+  +++ FLDIACFF GE I  V R  D         L    DKSL+ +   +
Sbjct: 304 KTSYDELDSHDQQIFLDIACFFKGEPIYCVVRFLDACGFSTLIGLKVLADKSLVIMLNEK 363

Query: 344 LQMHDLLQEM 353
           + MHDLLQEM
Sbjct: 364 VDMHDLLQEM 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147799796|emb|CAN70507.1| hypothetical protein VITISV_024109 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127750|ref|XP_002329168.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870949|gb|EEF08080.1| tir-nbs-lrr resistance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449524388|ref|XP_004169205.1| PREDICTED: TMV resistance protein N-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|8843806|dbj|BAA97354.1| disease resistance protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357499087|ref|XP_003619832.1| Disease resistance-like protein GS3-3 [Medicago truncatula] gi|355494847|gb|AES76050.1| Disease resistance-like protein GS3-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357449443|ref|XP_003594998.1| TMV resistance protein N [Medicago truncatula] gi|355484046|gb|AES65249.1| TMV resistance protein N [Medicago truncatula] Back     alignment and taxonomy information
>gi|124360568|gb|ABD33387.2| TIR [Medicago truncatula] Back     alignment and taxonomy information
>gi|357449525|ref|XP_003595039.1| TMV resistance protein N [Medicago truncatula] gi|355484087|gb|AES65290.1| TMV resistance protein N [Medicago truncatula] Back     alignment and taxonomy information
>gi|124359513|gb|ABN05946.1| TIR [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
UNIPROTKB|Q40392 1144 N "TMV resistance protein N" [ 0.441 0.136 0.484 1e-63
TAIR|locus:2167457 1191 AT5G36930 [Arabidopsis thalian 0.399 0.118 0.503 5.1e-61
TAIR|locus:2151506 1127 RPS6 "RESISTANT TO P. SYRINGAE 0.393 0.123 0.475 1.7e-52
TAIR|locus:2155189 980 AT5G49140 [Arabidopsis thalian 0.396 0.142 0.5 2.3e-52
TAIR|locus:2160487 1085 AT5G41550 [Arabidopsis thalian 0.402 0.130 0.479 8e-52
TAIR|locus:2130270 1449 RPP5 "RECOGNITION OF PERONOSPO 0.410 0.100 0.470 1.6e-51
TAIR|locus:2146243 900 AT5G18360 [Arabidopsis thalian 0.390 0.153 0.462 3.3e-51
TAIR|locus:2163426 1187 TAO1 "target of AVRB operation 0.399 0.118 0.489 5.6e-51
TAIR|locus:2136108 1095 AT4G11170 [Arabidopsis thalian 0.393 0.126 0.460 7.9e-51
TAIR|locus:2115870 1234 AT4G08450 [Arabidopsis thalian 0.456 0.130 0.438 3.5e-50
UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] Back     alignment and assigned GO terms
 Score = 379 (138.5 bits), Expect = 1.0e-63, Sum P(2) = 1.0e-63
 Identities = 78/161 (48%), Positives = 105/161 (65%)

Query:    16 YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVI 75
             Y VFLSFRGEDTR  FTSHL   L+ K I+ F DD+ LE G  I   L  A+E S  +++
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    76 ILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNF 135
             + S++YA+S+WCLNELV I++CK    + VIP+FY VDPS VR Q+ SF +AF  HE  +
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query:   136 PDKV---QKWRDALTEASNLSGYDSTESRIKKRLQLMKVLI 173
              D V   Q+WR AL EA+NL G  S ++R K     ++ ++
Sbjct:   132 KDDVEGIQRWRIALNEAANLKG--SCDNRDKTDADCIRQIV 170
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
PLN03210 1153 PLN03210, PLN03210, Resistant to P 2e-40
pfam01582135 pfam01582, TIR, TIR domain 9e-39
smart00255140 smart00255, TIR, Toll - interleukin 1 - resistance 6e-37
PLN03210 1153 PLN03210, PLN03210, Resistant to P 3e-28
pfam00931285 pfam00931, NB-ARC, NB-ARC domain 1e-22
PLN03194187 PLN03194, PLN03194, putative disease resistance pr 1e-09
pfam13676102 pfam13676, TIR_2, TIR domain 1e-09
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information 
 Score =  151 bits (382), Expect = 2e-40
 Identities = 78/159 (49%), Positives = 100/159 (62%), Gaps = 5/159 (3%)

Query: 1   MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEIS 60
           MASSSSSS    +  Y VF SF GED R  F SH    L RK I  F  D E+E+   + 
Sbjct: 1   MASSSSSSR---NWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAF-KDNEIERSQSLD 56

Query: 61  PALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQ 120
           P L  A+  S I+V++ SK+YASS WCLNEL+ I+ CK+  G++VIPVFY +DPS VRKQ
Sbjct: 57  PELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQ 116

Query: 121 RRSFGEAFVHH-ENNFPDKVQKWRDALTEASNLSGYDST 158
              FGEAF    +N   D+  +W+ ALT+ +N+ GY S 
Sbjct: 117 TGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153
>gnl|CDD|216585 pfam01582, TIR, TIR domain Back     alignment and domain information
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain Back     alignment and domain information
>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
PLN03210 1153 Resistant to P. syringae 6; Provisional 100.0
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 100.0
PLN03194187 putative disease resistance protein; Provisional 100.0
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 99.98
PF01582141 TIR: TIR domain; InterPro: IPR000157 In Drosophila 99.8
smart00255140 TIR Toll - interleukin 1 - resistance. 99.75
PF13676102 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_ 99.56
PRK04841 903 transcriptional regulator MalT; Provisional 99.09
KOG3678832 consensus SARM protein (with sterile alpha and arm 98.8
PF08937130 DUF1863: MTH538 TIR-like domain (DUF1863); InterPr 98.15
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 98.05
PRK00411394 cdc6 cell division control protein 6; Reviewed 98.0
COG3903 414 Predicted ATPase [General function prediction only 98.0
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 97.99
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 97.89
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 97.53
PF05729166 NACHT: NACHT domain 97.52
PF08357150 SEFIR: SEFIR domain; InterPro: IPR013568 This doma 97.52
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 97.44
TIGR02928365 orc1/cdc6 family replication initiation protein. M 97.3
COG3899 849 Predicted ATPase [General function prediction only 97.24
COG2256 436 MGS1 ATPase related to the helicase subunit of the 97.19
PRK13342 413 recombination factor protein RarA; Reviewed 96.25
PRK06893229 DNA replication initiation factor; Validated 96.09
PF13173128 AAA_14: AAA domain 95.79
PF14516331 AAA_35: AAA-like domain 95.76
PF10137125 TIR-like: Predicted nucleotide-binding protein con 95.17
PRK08727233 hypothetical protein; Validated 95.11
PRK05564313 DNA polymerase III subunit delta'; Validated 94.7
PRK07471365 DNA polymerase III subunit delta'; Validated 94.46
PRK08084235 DNA replication initiation factor; Provisional 94.42
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.29
PLN03025319 replication factor C subunit; Provisional 93.48
PRK00440319 rfc replication factor C small subunit; Reviewed 93.37
PRK13341 725 recombination factor protein RarA/unknown domain f 93.23
PRK04195 482 replication factor C large subunit; Provisional 93.09
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 92.21
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 92.1
PRK09112351 DNA polymerase III subunit delta'; Validated 91.76
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 91.53
PRK09087226 hypothetical protein; Validated 90.75
PRK05707328 DNA polymerase III subunit delta'; Validated 90.39
PTZ001121164 origin recognition complex 1 protein; Provisional 89.93
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 89.66
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 89.38
PRK14964 491 DNA polymerase III subunits gamma and tau; Provisi 89.09
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 88.87
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 88.81
KOG2028 554 consensus ATPase related to the helicase subunit o 88.0
COG4916329 Uncharacterized protein containing a TIR (Toll-Int 87.75
COG0593408 DnaA ATPase involved in DNA replication initiation 86.82
PRK14086617 dnaA chromosomal replication initiation protein; P 86.32
PRK12402337 replication factor C small subunit 2; Reviewed 86.15
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 86.05
PRK00149450 dnaA chromosomal replication initiation protein; R 86.04
PRK14963 504 DNA polymerase III subunits gamma and tau; Provisi 85.54
PRK06645 507 DNA polymerase III subunits gamma and tau; Validat 85.49
PRK14087450 dnaA chromosomal replication initiation protein; P 84.98
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 84.79
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 84.42
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 84.26
PRK12422445 chromosomal replication initiation protein; Provis 84.12
PRK08769319 DNA polymerase III subunit delta'; Validated 83.45
PRK08903227 DnaA regulatory inactivator Hda; Validated 83.4
PRK05642234 DNA replication initiation factor; Validated 83.3
PRK14958 509 DNA polymerase III subunits gamma and tau; Provisi 83.21
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 83.16
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 83.14
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 82.8
PRK14088440 dnaA chromosomal replication initiation protein; P 82.38
PF1327183 DUF4062: Domain of unknown function (DUF4062) 82.28
PRK08116268 hypothetical protein; Validated 81.82
PRK07940394 DNA polymerase III subunit delta'; Validated 81.72
PRK04132846 replication factor C small subunit; Provisional 81.5
PRK06620214 hypothetical protein; Validated 80.49
>PLN03210 Resistant to P Back     alignment and domain information 
Probab=100.00  E-value=1.9e-68  Score=566.54  Aligned_cols=348  Identities=43%  Similarity=0.676  Sum_probs=311.4

Q ss_pred             CCCCCCCCCCCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634            1 MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD   80 (353)
Q Consensus         1 m~~~~~~~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~   80 (353)
                      ||+||   |+++.|+|||||||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|+|||++
T Consensus         1 ~~~~~---~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~   76 (1153)
T PLN03210          1 MASSS---SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKN   76 (1153)
T ss_pred             CCCCC---CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCC
Confidence            55554   334679999999999999999999999999999999999998 79999999999999999999999999999


Q ss_pred             cccchhhHhhhhhhhhccccCCcEEEeEEeecCCcccccccccccccceecccCC-chHHHHHHHHHHhhccCCCCCchH
Q 045634           81 YASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNF-PDKVQKWRDALTEASNLSGYDSTE  159 (353)
Q Consensus        81 ~~~s~~~~~El~~~~~~~~~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~  159 (353)
                      |++|+||++||++|++|.+..++.|+||||+|+|++|++|+|.|+++|..+.... .+++++|++||.+++++.|++...
T Consensus        77 ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~  156 (1153)
T PLN03210         77 YASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN  156 (1153)
T ss_pred             cccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC
Confidence            9999999999999999998889999999999999999999999999998876543 478999999999999999976432


Q ss_pred             ---H----------------------------------------------------------------------------
Q 045634          160 ---S----------------------------------------------------------------------------  160 (353)
Q Consensus       160 ---~----------------------------------------------------------------------------  160 (353)
                         +                                                                            
T Consensus       157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~  236 (1153)
T PLN03210        157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ  236 (1153)
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence               0                                                                            


Q ss_pred             ---------------------------------------------------HHHHHHhcCceeeEeccccchHHHHHHHH
Q 045634          161 ---------------------------------------------------RIKKRLQLMKVLIVLDDVHDEFTELKSLA  189 (353)
Q Consensus       161 ---------------------------------------------------~l~~~L~~kr~LlVLDdv~~~~~~~~~l~  189 (353)
                                                                         .++++|++||+||||||||+ ..+|+.+.
T Consensus       237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~  315 (1153)
T PLN03210        237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD-QDVLDALA  315 (1153)
T ss_pred             eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC-HHHHHHHH
Confidence                                                               02344567899999999999 99999998


Q ss_pred             hhcC-CCCCcEEEEEeCccccccccCccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 045634          190 RRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVL  268 (353)
Q Consensus       190 ~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~  268 (353)
                      .... +++||+||||||++.++..++..++|+|+.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+++
T Consensus       316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl  395 (1153)
T PLN03210        316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL  395 (1153)
T ss_pred             hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            8777 889999999999999998887889999999999999999999999887777789999999999999999999999


Q ss_pred             hhc-----------cccccccCCCchHHHHHHhhhccCCH-hHHHHHhhhhccCCCCCHHHHHHHHhcC-----chHHHH
Q 045634          269 ANN-----------NGKLMKLISEPNIYNVLKISYDELNL-EEKKTFLDIACFFTGEDIDFVRRIRDDP-----SSLDTF  331 (353)
Q Consensus       269 g~~-----------~~~~l~~~~~~~v~~~l~~sy~~L~~-~~k~~fl~la~fp~~~~~~~l~~~w~~~-----~~l~~L  331 (353)
                      |++           .+.+++...+..|..+|++||+.|++ ..|.||++|||||.+.+.+.+..++..+     ..++.|
T Consensus       396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L  475 (1153)
T PLN03210        396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL  475 (1153)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence            999           34445555667899999999999987 5999999999999999988877766654     679999


Q ss_pred             hhCCCcEeeCCeEEechhhhhC
Q 045634          332 VDKSLITIFYNELQMHDLLQEM  353 (353)
Q Consensus       332 ~~~sLl~~~~~~~~mHdlv~d~  353 (353)
                      +++||++..+++++||||+|+|
T Consensus       476 ~~ksLi~~~~~~~~MHdLl~~~  497 (1153)
T PLN03210        476 VDKSLIHVREDIVEMHSLLQEM  497 (1153)
T ss_pred             HhcCCEEEcCCeEEhhhHHHHH
Confidence            9999999888899999999986

syringae 6; Provisional
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03194 putative disease resistance protein; Provisional Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo Back     alignment and domain information
>smart00255 TIR Toll - interleukin 1 - resistance Back     alignment and domain information
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>COG3903 Predicted ATPase [General function prediction only] Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>COG3899 Predicted ATPase [General function prediction only] Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PF14516 AAA_35: AAA-like domain Back     alignment and domain information
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF13271 DUF4062: Domain of unknown function (DUF4062) Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3jrn_A176 Crystal Structure Of Tir Domain From Arabidopsis Th 1e-31
3ozi_A204 Crystal Structure Of The Tir Domain From The Flax D 8e-31
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 14  SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDIS 73
           +KY VFLSFRG DTR+ F S L   L R+ I+ F DD+ELE G   SP L   +E S  +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 74  VIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHEN 133
           V+++S++YA+S WCL+ELV I+D +K     V+P+FY V+P+ VR Q     E F  H +
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 134 NF-PDKVQKWRDALTEASNLSG 154
              P+KV KWR ALT  + LSG
Sbjct: 127 REDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 2e-89
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 3e-87
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 1e-70
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 1e-20
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 3e-18
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 3e-15
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 1e-09
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 1e-05
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 2e-05
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204 Back     alignment and structure
 Score =  266 bits (682), Expect = 2e-89
 Identities = 70/163 (42%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 1   MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEIS 60
           ++ S++ S      +Y+VFLSFRG DTR  FT  L  +L R +I  F DD+EL KG EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 61  PALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGK-IVIPVFYQVDPSDVRK 119
           P L  A++ S I V I+S  YA SKWCL EL  I+  ++ + + I++P+FY VDPSDVR 
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 120 QRRSFGEAFVHHENNF-PDKVQKWRDALTEASNLSGYDSTESR 161
           Q   + +AF  H N F    +Q W+DAL +  +L G+   ++ 
Sbjct: 141 QTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKND 183
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176 Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146 Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159 Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
3ozi_A204 L6TR; plant TIR domain, plant protein; 2.30A {Linu 100.0
3jrn_A176 AT1G72930 protein; TIR domain arabidopsis thaliana 100.0
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 100.0
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 99.97
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 99.97
3h16_A154 TIR protein; bacteria TIR domain, signaling protei 99.97
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 99.95
3ub2_A146 TOLL/interleukin-1 receptor domain-containing ADA 99.9
1fyx_A149 TOLL-like receptor 2; beta-alpha-beta fold, signal 99.86
2j67_A178 TOLL like receptor 10; TIR, IL-1, TLR10, membrane, 99.86
2js7_A160 Myeloid differentiation primary response protein M 99.85
1t3g_A159 X-linked interleukin-1 receptor accessory protein- 99.84
3j0a_A844 TOLL-like receptor 5; membrane protein, leucine-ri 99.54
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 99.06
2fna_A357 Conserved hypothetical protein; structural genomic 98.9
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 98.89
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 98.46
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 98.29
2v1u_A387 Cell division control protein 6 homolog; DNA repli 98.28
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 98.15
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 98.13
2chg_A226 Replication factor C small subunit; DNA-binding pr 97.85
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 97.43
1eiw_A111 Hypothetical protein MTH538; CHEY-like fold, flavo 97.34
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 97.13
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 96.56
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 96.55
3hyn_A189 Putative signal transduction protein; DUF1863 fami 95.99
2chq_A319 Replication factor C small subunit; DNA-binding pr 95.98
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 94.16
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 93.48
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 93.37
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 91.32
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 91.25
3pvs_A 447 Replication-associated recombination protein A; ma 90.94
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 90.77
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 90.04
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 89.66
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 88.26
2gno_A305 DNA polymerase III, gamma subunit-related protein; 87.9
3bos_A242 Putative DNA replication factor; P-loop containing 87.07
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 82.63
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Back     alignment and structure
Probab=100.00  E-value=2e-42  Score=291.41  Aligned_cols=154  Identities=45%  Similarity=0.774  Sum_probs=138.5

Q ss_pred             CCCCCCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccch
Q 045634            6 SSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSK   85 (353)
Q Consensus         6 ~~~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~   85 (353)
                      +||++.+.++|||||||+|+|++++|+.||+.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|||++|++|.
T Consensus        26 ~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~  105 (204)
T 3ozi_A           26 NPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK  105 (204)
T ss_dssp             --------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCH
T ss_pred             CCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCc
Confidence            34556788999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             hhHhhhhhhhhccc-cCCcEEEeEEeecCCcccccccccccccceecccCCc-hHHHHHHHHHHhhccCCCCCchH
Q 045634           86 WCLNELVNILDCKK-MNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFP-DKVQKWRDALTEASNLSGYDSTE  159 (353)
Q Consensus        86 ~~~~El~~~~~~~~-~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~  159 (353)
                      ||++||+++++|.+ ..+++||||||+|+|+++++|+|.|+++|..+...+. +++++|+.||.+++++.|++...
T Consensus       106 WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~  181 (204)
T 3ozi_A          106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK  181 (204)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred             HHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC
Confidence            99999999999985 4678999999999999999999999999999987765 67999999999999999987643
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Back     alignment and structure
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Back     alignment and structure
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Back     alignment and structure
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Back     alignment and structure
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1fyva_161 c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H 4e-19
d2a5yb3277 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor 1e-17
d1fyxa_149 c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H 2e-16
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 4e-19
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 8   SSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAV 67
             L  + ++  F+S+ G D+     + L   L ++ +Q  + +     G  I   +   +
Sbjct: 5   EELQRNLQFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCI 63

Query: 68  ETSDISVIILSKDYASSKWCLNELVNILDCK-KMNGKIVIPVFYQVDPSDVRKQRRSFGE 126
           E S  S+ +LS ++  S+WC  EL              +I +  +  P           +
Sbjct: 64  EKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLK 123

Query: 127 AFVHH 131
           + +  
Sbjct: 124 SLMAR 128
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 Back     information, alignment and structure
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 99.96
d1fyva_161 Toll-like receptor 1, TLR1 {Human (Homo sapiens) [ 99.79
d1fyxa_149 Toll-like receptor 2, TLR2 {Human (Homo sapiens) [ 99.75
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 96.9
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 94.45
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 94.34
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 92.75
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 92.73
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 92.5
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 90.76
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 87.03
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 86.99
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 86.88
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 86.32
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 84.59
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=5.2e-30  Score=229.75  Aligned_cols=221  Identities=12%  Similarity=0.108  Sum_probs=160.1

Q ss_pred             cCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc---------ccccc-ccceecccCCc--hHHHHHHH
Q 045634           79 KDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ---------RRSFG-EAFVHHENNFP--DKVQKWRD  144 (353)
Q Consensus        79 ~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~---------~~~f~-~~~~~~~~~~~--~~~~~~~~  144 (353)
                      +++.....-++++...+.........++.|+|  |+|||.+.+.         ...|+ ..|+.+...+.  ........
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~   99 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI   99 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHH
Confidence            44556677778888877665555677999999  9999965432         23466 45555555443  22233333


Q ss_pred             HHHhhccCCCC------Cc-h----HHHHHHHHhcCceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCcccccccc
Q 045634          145 ALTEASNLSGY------DS-T----ESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKC  213 (353)
Q Consensus       145 ~l~~~~~~~g~------~~-~----~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~~~  213 (353)
                      .+.........      .. .    ...+.+.+.++|+|+||||||+ ..+|+.+..     .||+||||||++.++..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~-~~~~~~~~~-----~~srilvTTR~~~v~~~~  173 (277)
T d2a5yb3         100 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETIRWAQE-----LRLRCLVTTRDVEISNAA  173 (277)
T ss_dssp             HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHHHHHHH-----TTCEEEEEESBGGGGGGC
T ss_pred             HHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhH-Hhhhhhhcc-----cCceEEEEeehHHHHHhc
Confidence            33332211110      11 1    1357788899999999999999 888887643     489999999999998877


Q ss_pred             Ccc-ceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc-----------cccccccCCC
Q 045634          214 GVN-NMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN-----------NGKLMKLISE  281 (353)
Q Consensus       214 ~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~-----------~~~~l~~~~~  281 (353)
                      ... +.|+|++|+.+||++||+.++|..... +..++++++|+++|+|+||||+++|+.           ....+.....
T Consensus       174 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~  252 (277)
T d2a5yb3         174 SQTCEFIEVTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL  252 (277)
T ss_dssp             CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS
T ss_pred             CCCCceEECCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcH
Confidence            554 689999999999999999999865543 356889999999999999999999999           1222333344


Q ss_pred             chHHHHHHhhhccCCHhHHHHHhhh
Q 045634          282 PNIYNVLKISYDELNLEEKKTFLDI  306 (353)
Q Consensus       282 ~~v~~~l~~sy~~L~~~~k~~fl~l  306 (353)
                      ..+..++.+||+.||++.|.||-++
T Consensus       253 ~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         253 VGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHhC
Confidence            6788899999999999999999764
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure