Citrus Sinensis ID: 045637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MDNDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDEQVACETEQEEEEHRTSTSSQAKQNLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSAGADDN
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEccccEEcHHHHHHHHHcccccccccccccEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
ccccHHHHHccccccccccccccccccccEEHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEcccccccccEEEEEcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
mdndqgiwenstlvfnncnpesttsFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGnmqyrpicnpllhrqiPQNLRELVRQFvpykwlatrgvdeesilhalptDLRRDIQRHLCLDLVrrvpffsqmddqlPDALCERLVSSLSTLRAQMLFIISGrlessttnggrtgffnsitlrpgdfcGEELLAWALLSKstvnlpsstRTVKALIEVEAFVLRAEDLKFVANQFRRLHskklqhtfcfyshhwrtwpaCFIQAAWRHCKKRkmaknlgmmesfsyvpdeqvaceteqeeeehrtstssqakqnLNVTILASRFAANTRRvgqkikgvemprlqrpdepdfsagaddn
MDNDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLatrgvdeesiLHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISgrlessttnggrTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDEQVACETEQEEEehrtstssqakqnlnVTILASrfaantrrvgqkikgvemprlqrpdepdfsagaddn
MDNDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDeqvaceteqeeeehrtstssqAKQNLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSAGADDN
******IWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSY******************************VTILASRFAA********************************
***DQGI*ENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSK****LPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAW*****************************************************LASRFA*********************************
MDNDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDE*********************KQNLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSAGADDN
*****GIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLG*********************************QNLNVTILASRFAANTRRVGQKIKGVEMPRLQR*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDEQVACETEQEEEEHRTSTSSQAKQNLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSAGADDN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
Q9SJA4726 Probable cyclic nucleotid yes no 0.982 0.530 0.626 1e-146
Q8L7Z0720 Probable cyclic nucleotid no no 0.989 0.538 0.638 1e-144
Q9LEQ3706 Putative cyclic nucleotid no no 0.979 0.543 0.557 1e-128
Q9SU64705 Probable cyclic nucleotid no no 0.979 0.544 0.526 1e-116
Q9SL29678 Putative cyclic nucleotid no no 0.788 0.455 0.572 1e-103
Q9FXH6753 Putative cyclic nucleotid no no 0.959 0.499 0.504 1e-102
Q9S9N5738 Putative cyclic nucleotid no no 0.941 0.5 0.507 1e-101
Q9M0A4733 Putative cyclic nucleotid no no 0.892 0.477 0.506 1e-100
Q8RWS9717 Probable cyclic nucleotid no no 0.872 0.476 0.501 3e-99
O82226747 Probable cyclic nucleotid no no 0.910 0.477 0.492 2e-98
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function desciption
 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/420 (62%), Positives = 305/420 (72%), Gaps = 35/420 (8%)

Query: 3   NDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSY 62
           +D+  W+N+T+VF+NC+P +   F  GIF + LT NVVSS FLEKY YCLW+GLQNLSSY
Sbjct: 305 DDRNNWQNTTVVFSNCDPSNNIQFTFGIFADALTKNVVSSPFLEKYLYCLWFGLQNLSSY 364

Query: 63  AQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RPICNPLL 106
            Q+L+ ST + ET+ A+L++I  LVL A LIGNMQ                 R     + 
Sbjct: 365 GQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWRLKRRDTEEWMG 424

Query: 107 HRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQ 166
           HR +PQNLRE VR+FV YKWLATRGVDEE+ILH+LP DLRRDIQRHLCLDLVRRVP F+Q
Sbjct: 425 HRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQ 484

Query: 167 MDDQLPDALCERLVSSLST-----LR-----AQMLFIISGRLESSTTNGGRTGFFNSITL 216
           MDDQL DA+CERL SSLST     +R      +MLFII G+LESSTTNGGRTGFFNSITL
Sbjct: 485 MDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITL 544

Query: 217 RPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKK 276
           RPGDFCGEELLAWALL KSTVNLPSSTRTV+AL EVEAF L+A DLKFVANQFRRLHSKK
Sbjct: 545 RPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVANQFRRLHSKK 604

Query: 277 LQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDEQVACETEQEEEE 336
           LQHTF +YSH WRTW ACF+Q AWR  K++K+AK+L + ESFS   +E+       EE  
Sbjct: 605 LQHTFRYYSHQWRTWAACFVQVAWRRYKRKKLAKSLSLAESFSSYDEEEAVAVAATEEMS 664

Query: 337 HRTSTSSQAKQ---------NLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSA 387
           H     S AK          +   TILASRFA NTRR   K+K VE+P L +PDEPDFS 
Sbjct: 665 HEGEAQSGAKARHHTSNVKPHFAATILASRFAKNTRRTAHKLKDVEIPMLPKPDEPDFSV 724
Probable cyclic nucleotide-gated ion channel.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|Q9LEQ3|CNG18_ARATH Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=3 SV=1 Back     alignment and function description
>sp|Q9SU64|CNG16_ARATH Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
356518292 833 PREDICTED: probable cyclic nucleotide-ga 0.994 0.468 0.705 1e-162
224143393 720 predicted protein [Populus trichocarpa] 0.992 0.540 0.705 1e-160
359484957 723 PREDICTED: probable cyclic nucleotide-ga 0.987 0.535 0.689 1e-159
147855614 731 hypothetical protein VITISV_038667 [Viti 0.994 0.533 0.702 1e-158
225464333 726 PREDICTED: probable cyclic nucleotide-ga 0.994 0.537 0.702 1e-158
357466539 741 Cyclic nucleotide-gated channel [Medicag 0.997 0.527 0.680 1e-154
297736054 709 unnamed protein product [Vitis vinifera] 0.951 0.526 0.669 1e-153
449437330 705 PREDICTED: probable cyclic nucleotide-ga 0.994 0.553 0.672 1e-152
449464330 732 PREDICTED: probable cyclic nucleotide-ga 0.979 0.524 0.679 1e-151
449524112 732 PREDICTED: probable cyclic nucleotide-ga 0.979 0.524 0.679 1e-151
>gi|356518292|ref|XP_003527813.1| PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Glycine max] Back     alignment and taxonomy information
 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/418 (70%), Positives = 323/418 (77%), Gaps = 28/418 (6%)

Query: 3   NDQGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSY 62
           +D+  W N+T VF NCNPES+TSF  GIF N + NNVVSS F+EKY YCLWWGLQNLSSY
Sbjct: 416 DDRMKWVNTTSVFGNCNPESSTSFNYGIFGNAVENNVVSSAFVEKYLYCLWWGLQNLSSY 475

Query: 63  AQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RPICNPLL 106
            QSL  ST++ ET  A+LI+IL LVL AHLIGNMQ                 R     + 
Sbjct: 476 GQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMS 535

Query: 107 HRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQ 166
           HRQ+PQNLRE VR+FV YKWLATRGVDEE+IL  LPTDLRRDIQRHLCLDLVRRVPFFSQ
Sbjct: 536 HRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQ 595

Query: 167 MDDQLPDALCERLVSSLSTLRA----------QMLFIISGRLESSTTNGGRTGFFNSITL 216
           MDDQL DA+CERLVSSLST             +MLFII GRLESSTTNGGRTGFFNSITL
Sbjct: 596 MDDQLLDAICERLVSSLSTQGTNIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITL 655

Query: 217 RPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKK 276
           RPGDFCGEELLAWALL KST+NLPSSTRTVKAL+EVEAF LRAEDLKFVANQFRRLHSKK
Sbjct: 656 RPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKK 715

Query: 277 LQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDEQVACETEQEEEE 336
           LQHTF FYSHHWRTW ACFIQAAWR  KKR + K+L + E  S+  DEQV  E E  EEE
Sbjct: 716 LQHTFRFYSHHWRTWAACFIQAAWRRFKKRMLTKSLSLRECQSFNHDEQVGDEMEHGEEE 775

Query: 337 HR--TSTSSQAKQNLNVTILASRFAANTRRVGQKIKGVEMPRLQRPDEPDFSAGADDN 392
           H   TS ++Q KQNL VTILASRFAANTRR  QKIK VE+P+ Q+P+EPDFS   DD 
Sbjct: 776 HSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKIKDVELPKFQKPEEPDFSVEPDDG 833

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224143393|ref|XP_002324941.1| predicted protein [Populus trichocarpa] gi|222866375|gb|EEF03506.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359484957|ref|XP_002264416.2| PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147855614|emb|CAN83465.1| hypothetical protein VITISV_038667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464333|ref|XP_002272241.1| PREDICTED: probable cyclic nucleotide-gated ion channel 14 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357466539|ref|XP_003603554.1| Cyclic nucleotide-gated channel [Medicago truncatula] gi|355492602|gb|AES73805.1| Cyclic nucleotide-gated channel [Medicago truncatula] Back     alignment and taxonomy information
>gi|297736054|emb|CBI24092.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437330|ref|XP_004136445.1| PREDICTED: probable cyclic nucleotide-gated ion channel 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464330|ref|XP_004149882.1| PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524112|ref|XP_004169067.1| PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.724 0.394 0.683 3e-101
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.721 0.389 0.674 4.4e-100
TAIR|locus:2185510706 CNGC18 "AT5G14870" [Arabidopsi 0.668 0.371 0.636 2.7e-97
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.936 0.511 0.478 1.6e-86
TAIR|locus:2097860705 CNGC16 "cyclic nucleotide-gate 0.709 0.394 0.586 9.1e-84
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.709 0.376 0.545 4.1e-77
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.545 0.315 0.642 1.6e-75
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.719 0.374 0.547 3.5e-75
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.515 0.275 0.643 2e-73
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.681 0.357 0.518 5.5e-70
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 203/297 (68%), Positives = 226/297 (76%)

Query:   107 HRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQ 166
             HRQ+P+ LR  VR++  YKWLATRGVDEE +L +LPTDLRRDIQRHLCLDLVRRVPFFSQ
Sbjct:   425 HRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQ 484

Query:   167 MDDQLPDALCERLVSSLST----------LRAQMLFIISGRLESSTTNGGRTGFFNSITL 216
             MDDQL DA+CERLVSSL T          L ++MLFII GRLESSTTNGGRTGFFNSI L
Sbjct:   485 MDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIIL 544

Query:   217 RPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKK 276
             RPGDFCGEELL+WALL KST+NLPSSTRTV+AL+EVEAF LRAEDLKFVANQFRRLHSKK
Sbjct:   545 RPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKK 604

Query:   277 LQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMESFSYVPDXXXXXXXXXXXXX 336
             LQHTF FYSHHWRTW ACFIQAAWR  K+R M  NL  +ES     +             
Sbjct:   605 LQHTFRFYSHHWRTWAACFIQAAWRRYKRRVMENNLTAIESMEN-EEGEVGEELVVVEEE 663

Query:   337 XXXXXXXXAKQNLNVTILASRFAANTRR--VGQKIKGVEMPRLQRPDEPDFSAGADD 391
                      K NL V +LASRFAANTRR    Q++K VE+PR ++P+EPDFSA  DD
Sbjct:   664 ECVEESPRTKMNLGVMVLASRFAANTRRGVAAQRVKDVELPRFKKPEEPDFSAEHDD 720
GO:0005216 "ion channel activity" evidence=IEA;ISS
GO:0005249 "voltage-gated potassium channel activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006811 "ion transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185510 CNGC18 "AT5G14870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097860 CNGC16 "cyclic nucleotide-gated channel 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 2e-07
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 0.001
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 29/133 (21%)

Query: 163 FFSQMDDQLPDALCERLVSSL----STLRAQ------MLFIISGRLESSTTN-GGRTGFF 211
            FS +DD+  + L + L          +  Q      +  ++SG +E    +  GR    
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 212 NSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRR 271
               L PGD  GE  L         +     + TV+AL + E  VL   D       FRR
Sbjct: 61  G--FLGPGDLFGELAL---------LGNGPRSATVRALTDSELLVLPRSD-------FRR 102

Query: 272 LHSKKLQHTFCFY 284
           L  +  +      
Sbjct: 103 LLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
KOG0498727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 99.95
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.33
cd00038115 CAP_ED effector domain of the CAP family of transc 99.15
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.1
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.07
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.06
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.03
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 98.97
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 98.87
PRK11161235 fumarate/nitrate reduction transcriptional regulat 98.85
COG2905 610 Predicted signal-transduction protein containing c 98.85
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.85
PLN02868 413 acyl-CoA thioesterase family protein 98.81
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.68
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 98.68
PRK09391230 fixK transcriptional regulator FixK; Provisional 98.59
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.51
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 98.49
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 98.31
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.25
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 98.09
PRK10537393 voltage-gated potassium channel; Provisional 98.05
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.45
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 97.44
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.29
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.26
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 97.21
PF00520200 Ion_trans: Ion transport protein calcium channel s 97.19
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 96.58
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 95.52
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.31
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 95.1
PRK11832207 putative DNA-binding transcriptional regulator; Pr 94.98
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 94.97
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 94.56
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 92.91
PF04831153 Popeye: Popeye protein conserved region; InterPro: 92.72
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 88.53
smart0001526 IQ Short calmodulin-binding motif containing conse 82.61
PF0589974 Cupin_3: Protein of unknown function (DUF861); Int 80.18
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-79  Score=642.80  Aligned_cols=329  Identities=52%  Similarity=0.834  Sum_probs=304.0

Q ss_pred             CCccccchhhhhhcCccCcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc-----
Q 045637           24 TSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY-----   98 (392)
Q Consensus        24 ~~f~~gi~~~a~~~~i~~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~-----   98 (392)
                      ..|+||+|+|++           ||++|||||++||||+|||+++|+|..|++|+|++|++|+++||++||||++     
T Consensus       282 ~~~~fg~~s~~~-----------kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~  350 (727)
T KOG0498|consen  282 LSFTFGIYSLAL-----------KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL  350 (727)
T ss_pred             ccccccchhHHH-----------HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence            348999999987           9999999999999999999999999999999999999999999999999999     


Q ss_pred             -----------ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCC
Q 045637           99 -----------RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQM  167 (392)
Q Consensus        99 -----------~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l  167 (392)
                                 +++++||++|+||++||+||++|++|+|..++|+||+++|++||++||+||++|+|+++|++||+|++|
T Consensus       351 tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~m  430 (727)
T KOG0498|consen  351 TSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGM  430 (727)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcC
Confidence                       799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCC
Q 045637          168 DDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTV  237 (392)
Q Consensus       168 ~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~  237 (392)
                      |+++|++||.++|+.+|+||          ++||||++|.|++.+++||  +++++..|++||+|||+.++||++     
T Consensus       431 d~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~-----  503 (727)
T KOG0498|consen  431 DDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLD-----  503 (727)
T ss_pred             CHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhc-----
Confidence            99999999999999999999          9999999999999999887  678899999999999999999985     


Q ss_pred             CCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhHHhhccccc
Q 045637          238 NLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMES  317 (392)
Q Consensus       238 ~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~s~~~r~~~~~~iq~~w~~~~~r~~~~~~~~~~~  317 (392)
                       + |+++||+|+|.|+++.|+++||++|+++||++++++++|++||||++||+|+||+||++||||++||..+.+..+|.
T Consensus       504 -~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~  581 (727)
T KOG0498|consen  504 -L-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEE  581 (727)
T ss_pred             -C-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcc
Confidence             1 34999999999999999999999999999999999999999999999999999999999999999999998887764


Q ss_pred             CCCCCchhhhhhhhhHHhhhhcccccccccchhHHHHHHHHHHHHhhhhhhcc-----CCCCCCCCCCCCCCCCCCC
Q 045637          318 FSYVPDEQVACETEQEEEEHRTSTSSQAKQNLNVTILASRFAANTRRVGQKIK-----GVEMPRLQRPDEPDFSAGA  389 (392)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  389 (392)
                      ...              ...   .+.+...+++++++|++||+|+++.++...     ...++.++||.||||+.++
T Consensus       582 ~~~--------------~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~  641 (727)
T KOG0498|consen  582 ESA--------------IRG---DDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAE  641 (727)
T ss_pred             hhh--------------hcc---ccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCccccc
Confidence            321              111   113556889999999999999999887632     3457789999999998643

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 9e-36
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (371), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 91/124 (73%), Gaps = 10/124 (8%)
Query: 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLRA----------QMLFIISGRLESSTTNGGR 207
           VRRVP F  MD++L DA+CERL   L T ++          +MLFII GRLES TT+GGR
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 208 TGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVAN 267
           +GF+N   L+ GDFCG+ELL WAL  KS  NLPSSTRTVKAL EVEAF L A++LKFVA+
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 268 QFRR 271
           QFRR
Sbjct: 128 QFRR 131

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
3ukn_A212 Novel protein similar to vertebrate potassium VOL 5e-52
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 9e-49
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 2e-45
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 6e-40
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 3e-39
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 9e-09
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 1e-06
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-06
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 1e-05
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 1e-04
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 1e-05
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 3e-05
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 4e-05
2pqq_A149 Putative transcriptional regulator; APC7345, strep 4e-05
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 5e-05
4din_B381 CAMP-dependent protein kinase type I-beta regulat 5e-05
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 7e-05
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 1e-04
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-04
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 8e-04
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 7e-04
4ava_A333 Lysine acetyltransferase; allosteric regulation, d 8e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  171 bits (436), Expect = 5e-52
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 27/190 (14%)

Query: 107 HRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQ 166
             ++P+ L + + +     W    G+D   +L   P +LR DI  HL  +L+ ++P F  
Sbjct: 27  VHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFES 85

Query: 167 MDDQLPDALCERLVSSLST-----LRA-----QMLFIISGRLESSTTNGGRTGFFNSITL 216
                  +L   + +S        +R       + F+ SG +E    N           L
Sbjct: 86  ASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLA------IL 139

Query: 217 RPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVAN---QFRRLH 273
             GD  G + L           +  +   VKAL   +   +  + L+ V     ++ +  
Sbjct: 140 GKGDLIGSDSLTKE-------QVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKF 192

Query: 274 SKKLQHTFCF 283
             ++QH   +
Sbjct: 193 VSEIQHDLTY 202
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.96
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.96
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.96
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.9
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.77
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.65
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.64
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.62
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.61
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.59
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.57
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.55
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.55
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.54
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.53
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.5
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.49
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.49
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.48
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.48
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.48
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.47
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.46
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.45
4ava_A333 Lysine acetyltransferase; allosteric regulation, d 99.45
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.44
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.43
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.42
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.41
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.41
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.4
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.4
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.4
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.37
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.36
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.35
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.35
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.34
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.31
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.3
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.29
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.27
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.26
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.25
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.2
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.18
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.17
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.13
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.08
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.05
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.04
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.04
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.03
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.0
3ouf_A97 Potassium channel protein; ION channel, membrane, 98.97
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 98.96
2q67_A114 Potassium channel protein; inverted teepee, helix 98.96
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 98.94
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 98.91
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 98.89
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 98.79
3um7_A309 Potassium channel subfamily K member 4; potassium 98.68
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.62
3b02_A195 Transcriptional regulator, CRP family; structural 98.6
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.56
1xl4_A301 Inward rectifier potassium channel; integral membr 98.56
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.46
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 98.46
1lnq_A336 MTHK channels, potassium channel related protein; 98.36
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.36
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.33
3um7_A309 Potassium channel subfamily K member 4; potassium 98.26
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 98.22
3sya_A340 G protein-activated inward rectifier potassium CH; 97.93
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 97.85
3rvy_A285 ION transport protein; tetrameric ION channel, vol 97.02
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 95.06
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.56
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
Probab=99.96  E-value=4.3e-29  Score=226.26  Aligned_cols=169  Identities=22%  Similarity=0.387  Sum_probs=154.7

Q ss_pred             ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhh
Q 045637           99 RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCER  178 (392)
Q Consensus        99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~  178 (392)
                      +.+++||++++||.+|+.||++||+|.|. +++.+++++++.||++||.+|..+++.++++++|+|++++++++..|+..
T Consensus        15 ~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~   93 (198)
T 2ptm_A           15 KQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTL   93 (198)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHh
Confidence            67899999999999999999999999997 68899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE
Q 045637          179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA  248 (392)
Q Consensus       179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A  248 (392)
                      +++..|.||          +.||||.+|.|++...+|.     .+..+++|++|||..+    +...     +++++|+|
T Consensus        94 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-----~~~~l~~G~~fGe~~~----~~~~-----~~~~~~~a  159 (198)
T 2ptm_A           94 LEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-----IATSLSDGSYFGEICL----LTRE-----RRVASVKC  159 (198)
T ss_dssp             CEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-----EEEEECTTCEESCHHH----HHSS-----CCSSEEEE
T ss_pred             ccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-----EEEEecCCCEechHHH----cCCC-----ccceEEEE
Confidence            999999999          8999999999999985543     3578999999999854    3443     78999999


Q ss_pred             eeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637          249 LIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC  282 (392)
Q Consensus       249 ~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r  282 (392)
                      .++|+++.|++++|..+++++|++....++...+
T Consensus       160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~  193 (198)
T 2ptm_A          160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR  193 (198)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999999999999999999999999877766544
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 7e-19
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 3e-06
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 8e-04
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 0.001
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.0 bits (196), Expect = 7e-19
 Identities = 75/128 (58%), Positives = 88/128 (68%), Gaps = 10/128 (7%)

Query: 156 DLVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNG 205
             VRRVP F  MD++L DA+CERL          +        +MLFII GRLES TT+G
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 206 GRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFV 265
           GR+GF+N   L+ GDFCG+ELL WAL  KS  NLPSSTRTVKAL EVEAF L A++LKFV
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 266 ANQFRRLH 273
           A+QFRR  
Sbjct: 126 ASQFRRSG 133
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.96
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.82
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.74
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.67
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.65
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.65
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.62
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.62
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.58
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.58
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.44
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.39
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.38
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.37
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.34
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.25
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.15
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.04
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 98.95
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.9
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.82
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 95.27
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.3e-29  Score=223.05  Aligned_cols=168  Identities=21%  Similarity=0.353  Sum_probs=151.5

Q ss_pred             ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhh
Q 045637           99 RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCER  178 (392)
Q Consensus        99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~  178 (392)
                      +.+++||+.++||++|+.||++||+|.|. .++.+++++++.||+.||.++..+++.++|+++|+|+++++.++..|+..
T Consensus        12 ~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~~~l~~l~~~   90 (193)
T d1q3ea_          12 KQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTK   90 (193)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhHHHHHHHHHH
Confidence            46899999999999999999999999996 57889999999999999999999999999999999999999999999999


Q ss_pred             cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE
Q 045637          179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA  248 (392)
Q Consensus       179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A  248 (392)
                      +++..|.||          +.||||.+|.|++...++.      ...+++|++|||..+    +...     ++++|++|
T Consensus        91 ~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~------~~~l~~G~~fGe~~~----~~~~-----~~~~~~~a  155 (193)
T d1q3ea_          91 LKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK------EMKLSDGSYFGEICL----LTRG-----RRTASVRA  155 (193)
T ss_dssp             CEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCC------EEEECTTCEECHHHH----HHCS-----BCSSEEEE
T ss_pred             HHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcc------eeeeccceeeeeeec----cCCC-----ccccccee
Confidence            999999999          8999999999999875432      257999999999955    3443     78999999


Q ss_pred             eeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637          249 LIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC  282 (392)
Q Consensus       249 ~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r  282 (392)
                      .++|+++.|++++|..++++||++..+..+.+.+
T Consensus       156 ~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~  189 (193)
T d1q3ea_         156 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  189 (193)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             cCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999988776655443
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure