Citrus Sinensis ID: 045653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCGNIY
Secondary Structure (PSIPRED)
cccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEccccccccccccccccEEEEEccccccEEcccHHHcccccccEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccEEEEcccHHHHHHcccccccccHcccEEEEEEcccccEEHHcccHHHcccccccccccccccccHEEEcccccEEEEEccHHHHHHHHcccEEEEccccEEEEEEccccccccccEccccccEEEEccccccEEcccccccccccccccEEEEEEccccHHHcccHHHHHHHHHHcEEEEccHHcHHEEEEccccccccccEEcccccEEEEcccccccEccccccccccccccEEEEEcccccEEEcccccccccccc
Coil and Loop (DISEMBL)
makvpcdafpllesltlhnliNLERICIdrlkvdsfnelktikveSCDEIFAIGGEADVVTEGIFAQISclslgnlpqlTSFCREVkrhsissntkdsqdqsmTAITCSyevnledkldtsttlfndkvrlpklealelHEINVEKiwrsqvpakfprfqsltrlvvsnchklKYLFSASMIRSVEQLQHLDICLCKGLlgiisedtaiqvtpcfvfprvstlrlidlpklrffypgmhtsewptlqsleatgcdnlkIFGSELssfcgniy
Flexible Loop (DISEMBL)
makvpcdafplleSLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSissntkdsqdqsmTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEinvekiwrsqvpakFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSelssfcgniy
Low Complexity Region (SEG)
MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCGNIY
Disordered region (IsUnstruct)
*****CDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV******************AITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCG***
Disordered Region (DISOPRED)
*AKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVV*EGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL**************FVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCG*I*
Disordered Region (DISEMBL)
MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR**************MTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCGNIY
Disordered Region (DISPRO)
*AKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCGNIY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSFCGNIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.577	0.172	0.275	2e-06

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 28/185 (15%)

Query: 75  NLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKL 134
           NLP LT+  R ++R SI    K   D         +E              ND   LP L
Sbjct: 708 NLPSLTNHGRNLRRLSI----KSCHDLEYLVTPADFE--------------ND--WLPSL 747

Query: 135 EALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDI 193
           E L LH + N+ ++W + V     R  ++  + +S+C+KLK   + S ++ + +L+ +++
Sbjct: 748 EVLTLHSLHNLTRVWGNSVSQDCLR--NIRCINISHCNKLK---NVSWVQKLPKLEVIEL 802

Query: 194 CLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG 253
             C+ +  +ISE  +  V    +FP + TLR  DLP+L    P   + +   +++L  T 
Sbjct: 803 FDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQ--KVETLVITN 860

Query: 254 CDNLK 258
           C  +K
Sbjct: 861 CPRVK 865

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.970	0.111	0.352	3e-34
296087872	1152	unnamed protein product [Vitis vinifera]	0.933	0.220	0.312	2e-31
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.937	0.193	0.352	1e-26
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.805	0.129	0.328	2e-25
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.930	0.189	0.337	6e-25
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.845	0.201	0.336	9e-25
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.915	0.185	0.332	1e-24
359488027	1520	PREDICTED: disease resistance protein At	0.808	0.144	0.302	1e-24
359488095	1347	PREDICTED: probable disease resistance p	0.805	0.162	0.323	3e-24
302143647	759	unnamed protein product [Vitis vinifera]	0.805	0.288	0.323	6e-24

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 157/306 (51%), Gaps = 42/306 (13%)

Query: 1    MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC------------- 47
            M  V  +AFP+LESL L++L +L++IC   L+V+SF +L+ I VE C             
Sbjct: 776  MEMVSSNAFPILESLILYDLSSLKKICHGALRVESFAKLRIIAVEHCNKLTNLFSFFVAR 835

Query: 48   ----------------DEIFA-----IGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV 86
                            +E+ A     +G + +VV    F Q+  LSL  LP L +F  +V
Sbjct: 836  GLSQLQKIKIAFCMKMEEVVAEESDELGDQNEVVDVIQFTQLYSLSLQYLPHLMNFYSKV 895

Query: 87   KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEK 146
            K  S+S     +Q +       S E+  ED+L T T LFN+K+  P LE L L+ IN++K
Sbjct: 896  KPSSLSR----TQPKPSITEARSEEIISEDELRTPTQLFNEKILFPNLEDLNLYAINIDK 951

Query: 147  IWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS-E 205
            +W  Q P+     Q+L RLVV+ C  LKYLF +S++  + QL+HL I  C  +  II+  
Sbjct: 952  LWNDQHPSISVSIQNLQRLVVNQCGSLKYLFPSSLVNILVQLKHLSITNCMSVEEIIAIG 1011

Query: 206  DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELS 265
                + T   VFP++  + L DLPKLR F  G  + E P L+ +    C   K F ++ S
Sbjct: 1012 GLKEEETTSTVFPKLEFMELSDLPKLRRFCIG-SSIECPLLKRMRICACPEFKTFAADFS 1070

Query: 266  SFCGNI 271
              C NI
Sbjct: 1071 --CANI 1074

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 159/339 (46%), Gaps = 85/339 (25%)

Query: 5   PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCD---------------- 48
           PC AFP+LESL L+ LINL+ +C  +L V SF+ L+ +KVE CD                
Sbjct: 614 PC-AFPVLESLFLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSR 672

Query: 49  -------------EIFAIGGEA--DVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISS 93
                        ++ A G E   D V   +FA++  L+L +LP+L +FC E K    ++
Sbjct: 673 LEKIEITRCKNMYKMVAQGKEDGDDAVDAILFAELRYLTLQHLPKLRNFCLEGKTMPSTT 732

Query: 94  NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKV-------------RLPKL------ 134
               + +     I CS     E +LD  T++FN  V             RL  L      
Sbjct: 733 KRSPTTNVRFNGI-CS-----EGELDNQTSVFNQLVCHSSIILSNYMLKRLQSLQFLKAV 786

Query: 135 ------EALELHEINVE--------------------KIWRSQVPAKFPRFQSLTRLVVS 168
                 E  ++  INV+                    +IW  + P     FQ+L  +++ 
Sbjct: 787 DCSSLEEVFDMEGINVKEAVAVTQLSKLILQFLPKVKQIWNKE-PRGILTFQNLKSVMID 845

Query: 169 NCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL 228
            C  LK LF AS++R + QLQ L +  C G+  I+++D  ++    FVFP+V++LRL  L
Sbjct: 846 QCQSLKNLFPASLVRDLVQLQELQVWSC-GIEVIVAKDNGVKTAAKFVFPKVTSLRLSHL 904

Query: 229 PKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSSF 267
            +LR FYPG HTS+WP L+ L+   C  + +F  E  +F
Sbjct: 905 HQLRSFYPGAHTSQWPLLKELKVHECPEVDLFAFETPTF 943

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 145/298 (48%), Gaps = 43/298 (14%)

Query: 5    PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC----------------- 47
            P  AF  L+SL L NL NLE+IC  +L  +S   L+ +KVESC                 
Sbjct: 788  PRTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVR 847

Query: 48   ------------DEIFAIGGEADVV-TEGI--FAQISCLSLGNLPQLTSFCREVKRHSIS 92
                        +E+ A   E D    E I  F Q+  L+L  LPQ TSF      HS  
Sbjct: 848  LEEITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLPQFTSF------HSNV 901

Query: 93   SNTKDSQDQS--MTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS 150
              + DSQ +   + +   S E+   ++L TS +LFN K+  P LE L+L  I VEKIW  
Sbjct: 902  EESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWHD 961

Query: 151  QVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI-ISEDTA- 208
            Q   + P  ++L  + V NC  L YL ++SM+ S+ QL+ L+IC CK +  I + ED   
Sbjct: 962  QPSVQSPCVKNLASIAVENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEEIVVPEDIGE 1021

Query: 209  IQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSS 266
             ++    +FP++  L LI LPKL  F    +  E  +L+ L    C  LK F S  SS
Sbjct: 1022 GKMMSKMLFPKLLILSLIRLPKLTRFCTS-NLLECHSLKVLTVGNCPELKEFISIPSS 1078

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 130/262 (49%), Gaps = 43/262 (16%)

Query: 8    AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67
            AFP L+ L +  L N+++I  +++  DSF++L+ +KV SC E+             IF  
Sbjct: 1087 AFPSLKFLIISGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELL-----------NIFP- 1134

Query: 68   ISCLSLGNLPQLTSFCREVKRHSISSNTKDSQD-QSMTAITCSYEVNLEDKLDTSTTLFN 126
             SC+                        K SQ  + M  + CS    LE+  D   T  N
Sbjct: 1135 -SCV-----------------------LKRSQSLRLMEVVDCSL---LEEVFDVEGTNVN 1167

Query: 127  DKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV 185
            + V +  L  L L  +  VEKIW    P     FQ+L  + +  C  LK LF AS+++ +
Sbjct: 1168 EGVTVTHLSRLILRLLPKVEKIWNKD-PHGILNFQNLKSIFIDKCQSLKNLFPASLVKDL 1226

Query: 186  EQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPT 245
             QL+ L +  C G+  I+++D   +    FVFP+V++L+L  L +LR FYPG HTS+WP 
Sbjct: 1227 VQLEKLKLRSC-GIEEIVAKDNEAETAAKFVFPKVTSLKLFHLHQLRSFYPGAHTSQWPL 1285

Query: 246  LQSLEATGCDNLKIFGSELSSF 267
            L+ L    CD + +F SE  +F
Sbjct: 1286 LKELIVRACDKVNVFASETPTF 1307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/299 (33%), Positives = 144/299 (48%), Gaps = 46/299 (15%)

Query: 1    MAKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC------------- 47
            M   P  AF  L+SL L NL NLE+IC  +L  +S   L+ +KVESC             
Sbjct: 784  MRMGPRTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIAR 843

Query: 48   ----------------DEIFAIGGEADVV-TEGI-FAQISCLSLGNLPQLTSFCREVKRH 89
                            +E+ A   E D    E I F Q+  L+L  LPQ TSF    ++ 
Sbjct: 844  RVVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFTQLRRLTLQCLPQFTSFHSNRRQK 903

Query: 90   SISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWR 149
             ++S+ +            S E+   ++L TS +LFN K+  PKLE L L  I VEKIW 
Sbjct: 904  LLASDVR------------SKEIVAGNELGTSMSLFNTKILFPKLEDLMLSSIKVEKIWH 951

Query: 150  SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED--T 207
             Q   + P  ++L  +VV +C  L YL ++SM+ S+ QL+ L+IC CK +  I+  +   
Sbjct: 952  DQHAVQPPCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKSMEEIVVPEGIG 1011

Query: 208  AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSS 266
              ++    +FP++  L LI LPKL  F    +  E  +L+ L    C  LK F S  SS
Sbjct: 1012 EGKMMSKMLFPKLHILSLIRLPKLTRFCTS-NLLECHSLKVLTLGKCPELKEFISIPSS 1069

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 138/276 (50%), Gaps = 46/276 (16%)

Query: 2    AKVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEI----------- 50
            ++ P   FP+LESL L+NL++LE++C   L  +SF +L  I+V +C ++           
Sbjct: 789  SEFPSHVFPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIEVGNCVKLKHLFPFSVARG 848

Query: 51   ----------FAIGGEADVVTEGI-------------FAQISCLSLGNLPQLTSFCREVK 87
                      F +  E  V  EG              F Q+S LSL  LP L +FC    
Sbjct: 849  LSQLQTINISFCLTMEEVVAEEGDEFEDSCTEIDVMEFNQLSSLSLQCLPHLKNFC---S 905

Query: 88   RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKI 147
            R   S   +   +   T++    +   ED+      LF +K+ +PKL+ LEL  INVEKI
Sbjct: 906  REKTSRLCQAQLNPVATSVGLQSKEISEDEPRNPLQLFCEKILIPKLKKLELVSINVEKI 965

Query: 148  WRSQVPAK--FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS- 204
            W  Q+  +  FP  Q+L  L V +CH LKYLFS SM++S+ QL++L +  CK +  IIS 
Sbjct: 966  WHGQLHRENTFP-VQNLQTLYVDDCHSLKYLFSPSMVKSLVQLKYLTVRNCKSMEEIISV 1024

Query: 205  ---EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG 237
               E+  +    C  F ++  + L DLP+L +F  G
Sbjct: 1025 EGVEEGEMMSEMC--FDKLEDVELSDLPRLTWFCAG 1058

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 46/295 (15%)

Query: 5    PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC----------------- 47
            P  AF  L+SL L NL NLE+IC  +L  +S  +L+ +KVESC                 
Sbjct: 788  PRTAFLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVR 847

Query: 48   ------------DEIFAIGGEADVVT-EGI-FAQISCLSLGNLPQLTSFCREVKRHSISS 93
                        +E+ A   E D    E I FAQ+  L+L  LPQ TSF    ++  ++S
Sbjct: 848  LEEITIIDCKIMEEVVAEESENDTADGEPIEFAQLRRLTLQCLPQFTSFHSNRRQKLLAS 907

Query: 94   NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVP 153
            + +            S E+   ++L TS +LFN K+  P LE L+L  I VEKIW  Q  
Sbjct: 908  DVR------------SKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWHDQPA 955

Query: 154  AKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED--TAIQV 211
             + P  ++L  +VV +C  L YL ++SM+ S+ QL+ L+IC C+ +  I+  +     ++
Sbjct: 956  VQPPCVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICNCESMEEIVVPEGIGEGKM 1015

Query: 212  TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSS 266
                +FP++  L L  LPKL  F    +  E  +L+ L    C  LK F S  SS
Sbjct: 1016 MSKMLFPKLHLLELSGLPKLTRFCTS-NLLECHSLKVLMVGNCPELKEFISIPSS 1069

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 129/261 (49%), Gaps = 41/261 (15%)

Query: 8    AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67
            A P LE L +  L N+++I  ++L  DSF +LK +KV SC ++       ++    +  +
Sbjct: 1002 ALPSLELLNISGLDNVKKIWHNQLPQDSFTKLKDVKVASCGQLL------NIFPSSMLKR 1055

Query: 68   ISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND 127
            +  L                             Q + A+ CS   +LE+  D       +
Sbjct: 1056 LQSL-----------------------------QFLKAVDCS---SLEEVFDMEGINVKE 1083

Query: 128  KVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVE 186
             V + +L  L L  +  V++IW  + P     FQ+L  +++  C  LK LF AS++R + 
Sbjct: 1084 AVAVTQLSKLILQFLPKVKQIWNKE-PRGILTFQNLKSVMIDQCQSLKNLFPASLVRDLV 1142

Query: 187  QLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTL 246
            QLQ L +  C G+  I+++D  ++    FVFP+V++LRL  L +LR FYPG HTS+WP L
Sbjct: 1143 QLQELQVWSC-GIEVIVAKDNGVKTAAKFVFPKVTSLRLSHLHQLRSFYPGAHTSQWPLL 1201

Query: 247  QSLEATGCDNLKIFGSELSSF 267
            + L+   C  + +F  E  +F
Sbjct: 1202 KELKVHECPEVDLFAFETPTF 1222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488095|ref|XP_002270726.2| PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera]

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 47/266 (17%)

Query: 8    AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67
            AFP L+ L +  L N+++I  +++  DSF++L+ +KV SC E+             IF  
Sbjct: 1081 AFPSLKFLIISGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELL-----------NIFP- 1128

Query: 68   ISCLSLGNLPQLTSFCREVKRHSISSNTKDSQD-QSMTAITCSYEVNLEDKLDTSTTLFN 126
             SC+                        K SQ  + M  + CS    LE+  D   T  N
Sbjct: 1129 -SCV-----------------------LKRSQSLRLMEVVDCSL---LEEVFDVEGTNVN 1161

Query: 127  ----DKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASM 181
                + V + +L  L L  +  VEKIW    P     FQ+L  + +  C  LK LF AS+
Sbjct: 1162 VNVKEGVTVTQLSQLILRLLPKVEKIWNKD-PHGILNFQNLKSIFIDKCQSLKNLFPASL 1220

Query: 182  IRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTS 241
            ++ + QL+ L++  C G+  I+++D   +    FVFP+V++L L++L +LR FYPG HTS
Sbjct: 1221 VKDLVQLEKLELRSC-GIEEIVAKDNEAETAAKFVFPKVTSLILVNLHQLRSFYPGAHTS 1279

Query: 242  EWPTLQSLEATGCDNLKIFGSELSSF 267
            +WP L+ L    CD + +F SE  +F
Sbjct: 1280 QWPLLKELIVRACDKVNVFASETPTF 1305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 47/266 (17%)

Query: 8   AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ 67
           AFP L+ L +  L N+++I  +++  DSF++L+ +KV SC E+             IF  
Sbjct: 220 AFPSLKFLIISGLDNVKKIWHNQIPQDSFSKLEVVKVASCGELL-----------NIFP- 267

Query: 68  ISCLSLGNLPQLTSFCREVKRHSISSNTKDSQD-QSMTAITCSYEVNLEDKLDTSTTLFN 126
            SC+                        K SQ  + M  + CS    LE+  D   T  N
Sbjct: 268 -SCV-----------------------LKRSQSLRLMEVVDCSL---LEEVFDVEGTNVN 300

Query: 127 ----DKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASM 181
               + V + +L  L L  +  VEKIW    P     FQ+L  + +  C  LK LF AS+
Sbjct: 301 VNVKEGVTVTQLSQLILRLLPKVEKIWNKD-PHGILNFQNLKSIFIDKCQSLKNLFPASL 359

Query: 182 IRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTS 241
           ++ + QL+ L++  C G+  I+++D   +    FVFP+V++L L++L +LR FYPG HTS
Sbjct: 360 VKDLVQLEKLELRSC-GIEEIVAKDNEAETAAKFVFPKVTSLILVNLHQLRSFYPGAHTS 418

Query: 242 EWPTLQSLEATGCDNLKIFGSELSSF 267
           +WP L+ L    CD + +F SE  +F
Sbjct: 419 QWPLLKELIVRACDKVNVFASETPTF 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.602	0.180	0.259	1.4e-07
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.466	0.141	0.25	0.00017
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.665	0.196	0.277	0.00059

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 46/177 (25%), Positives = 89/177 (50%)

Query:    83 CREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI 142
             C E+   ++ S T   ++    +I   +++   + L T     ND   LP LE L LH +
Sbjct:   701 CNELLYFNLPSLTNHGRNLRRLSIKSCHDL---EYLVTPADFENDW--LPSLEVLTLHSL 755

Query:   143 -NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLG 201
              N+ ++W + V     R  ++  + +S+C+KLK   + S ++ + +L+ +++  C+ +  
Sbjct:   756 HNLTRVWGNSVSQDCLR--NIRCINISHCNKLK---NVSWVQKLPKLEVIELFDCREIEE 810

Query:   202 IISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLK 258
             +ISE  +  V    +FP + TLR  DLP+L    P   + +   +++L  T C  +K
Sbjct:   811 LISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQ--KVETLVITNCPRVK 865

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 34/136 (25%), Positives = 64/136 (47%)

Query:   126 NDKVRLPKLEALELHEINVEKIWRSQVP-AKFPRFQSLTRLVVSNCHKLKYLFSASMIRS 184
             + ++ LP +    L E  +E    S++   +   F SL  + +SNC +L+ L   + +  
Sbjct:   701 SSRISLP-VTMDRLQEFTIEHCHTSEIKMGRICSFSSLIEVNLSNCRRLREL---TFLMF 756

Query:   185 VEQLQHLDICLCKGLLGIISEDTAI--QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSE 242
                L+ L +     L  II+++ A   + +    FP+++ L L +L +L+  Y       
Sbjct:   757 APNLKRLHVVSSNQLEDIINKEKAHDGEKSGIVPFPKLNELHLYNLRELKNIY--WSPLP 814

Query:   243 WPTLQSLEATGCDNLK 258
             +P L+ +   GC NLK
Sbjct:   815 FPCLEKINVMGCPNLK 830

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00059, P = 0.00059
 Identities = 56/202 (27%), Positives = 94/202 (46%)

Query:    68 ISCLSLGNLPQ-LTS----FCREVKRHSISSNTKD-SQDQSMTAITCSY--EVNLEDKLD 119
             +S  S+G L Q +TS    +C  +     +  TK  S   +M A++  Y   ++L    +
Sbjct:   702 VSNASIGWLLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCE 761

Query:   120 TSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA 179
             +   LF      P LE L L  +N+E I          R Q L  L VS C +LK LFS 
Sbjct:   762 SQLDLF------PNLEELSLDNVNLESIGELNGFLGM-RLQKLKLLQVSGCRQLKRLFSD 814

Query:   180 SMIR-SVEQLQHLDICLCKGLLGIISEDTAIQVTPCF--VFPRVSTLRLIDLPKLRFFYP 236
              ++  ++  LQ + +  C  L  + +  +++ V  C   + P+++ ++L  LP+LR    
Sbjct:   815 QILAGTLPNLQEIKVVSCLRLEELFNF-SSVPVDFCAESLLPKLTVIKLKYLPQLRSLCN 873

Query:   237 GMHTSEWPTLQSLEATGCDNLK 258
                  E  +L+ LE   C++LK
Sbjct:   874 DRVVLE--SLEHLEVESCESLK 893


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       272   0.00099  114 3  11 22  0.44    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.07u 0.09s 24.16t   Elapsed:  00:00:01
  Total cpu time:  24.07u 0.09s 24.16t   Elapsed:  00:00:01
  Start:  Tue May 21 03:10:09 2013   End:  Tue May 21 03:10:10 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.27
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.88
KOG4341	483	consensus F-box protein containing LRR [General fu	98.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.36
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.23
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.17
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.13
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.04
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.0
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.47
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.44
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.62
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.22
PLN03150	623	hypothetical protein; Provisional	96.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.6
PLN03150	623	hypothetical protein; Provisional	95.53
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.42
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	93.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.59
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.34
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	88.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	86.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	82.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	82.65
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	81.95

>PLN03210 Resistant to P

Probab=99.63  E-value=3.1e-15  Score=148.47  Aligned_cols=230  Identities=20%  Similarity=0.292  Sum_probs=132.4

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|+.|+|+++.+++.+    +....+++|+.|++.+|..+...+....     .+++|+.|++++|..++.+|....
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~i----p~ls~l~~Le~L~L~~c~~L~~lp~si~-----~L~~L~~L~L~~c~~L~~Lp~~i~  702 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEI----PDLSMATNLETLKLSDCSSLVELPSSIQ-----YLNKLEDLDMSRCENLEILPTGIN  702 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcC----CccccCCcccEEEecCCCCccccchhhh-----ccCCCCEEeCCCCCCcCccCCcCC
Confidence            4566666666666555555    2344567777777777766654432211     456677777777766666665432


Q ss_pred             ccccc-ccccc-cccccc----ceeecceeeeccCCCCccccccc------------------------------ccCCC
Q 045653           88 RHSIS-SNTKD-SQDQSM----TAITCSYEVNLEDKLDTSTTLFN------------------------------DKVRL  131 (272)
Q Consensus        88 ~~~~~-~~~~~-~~~~~~----~~l~~~l~i~~~~~~~~~~~~~~------------------------------~~~~l  131 (272)
                      ..++. +.+.. .....+    .+|+ .+++..+. ..   .++.                              .....
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~~~nL~-~L~L~~n~-i~---~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDISTNIS-WLDLDETA-IE---EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccccCCcC-eeecCCCc-cc---cccccccccccccccccccchhhccccccccchhhhhcc
Confidence            22221 00000 000000    1111 22221111 00   0110                              01123


Q ss_pred             CCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC---
Q 045653          132 PKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT---  207 (272)
Q Consensus       132 ~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~---  207 (272)
                      ++|+.|++.+| .+..     +|..+..+++|+.|++.+|+.+..+ |..  .++++|+.|++++|..+..++....   
T Consensus       778 ~sL~~L~Ls~n~~l~~-----lP~si~~L~~L~~L~Ls~C~~L~~L-P~~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~  849 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVE-----LPSSIQNLHKLEHLEIENCINLETL-PTG--INLESLESLDLSGCSRLRTFPDISTNIS  849 (1153)
T ss_pred             ccchheeCCCCCCccc-----cChhhhCCCCCCEEECCCCCCcCee-CCC--CCccccCEEECCCCCccccccccccccC
Confidence            46666666666 3333     2334567888999999988888877 532  2688889999998877765442110   


Q ss_pred             --------cccc-CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          208 --------AIQV-TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       208 --------~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                              .... ..+..+++|+.|++.+|.+++.++...  ..+++|+.+++++|++++.++
T Consensus       850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCccccccc
Confidence                    0000 124457899999999999999988766  678999999999999987543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.45  E-value=1.2e-12  Score=130.30  Aligned_cols=105  Identities=17%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      +.+|++|.+.++ .++.++   .....+++|+.|++++|..+...+..  .    .+++|+.|++++|..+..+|.....
T Consensus       610 ~~~L~~L~L~~s-~l~~L~---~~~~~l~~Lk~L~Ls~~~~l~~ip~l--s----~l~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLW---DGVHSLTGLRNIDLRGSKNLKEIPDL--S----MATNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             ccCCcEEECcCc-cccccc---cccccCCCCCEEECCCCCCcCcCCcc--c----cCCcccEEEecCCCCccccchhhhc
Confidence            356777777764 355552   23356888899998888777655421  1    5789999999999888877653221


Q ss_pred             cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI  142 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~  142 (272)
                                    ++.|+ .+.+..|..+.   .++... .+++|+.|.+.+|
T Consensus       680 --------------L~~L~-~L~L~~c~~L~---~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        680 --------------LNKLE-DLDMSRCENLE---ILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             --------------cCCCC-EEeCCCCCCcC---ccCCcC-CCCCCCEEeCCCC
Confidence                          22333 45555555444   233221 4555555555555

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.27  E-value=2.2e-11  Score=119.89  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653          125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS  204 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  204 (272)
                      +..+..+++|+.|++.+|++...    .|..+..+++|++|++.++.-...+ | ..+.++++|++|++++|. +....+
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-p-~~l~~l~~L~~L~Ls~n~-l~~~~p  301 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSGPI-P-PSIFSLQKLISLDLSDNS-LSGEIP  301 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeeccC-c-hhHhhccCcCEEECcCCe-eccCCC
Confidence            33445556666666666544321    1223344555666655554322222 2 234455555555555542 211110


Q ss_pred             cCCccc------------------cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          205 EDTAIQ------------------VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       205 ~~~~~~------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      . ....                  ......+++|+.|+++++.-...++...  ..+++|+.|+++++.--..+|
T Consensus       302 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        302 E-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             h-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCC
Confidence            0 0000                  0112345677777776664333444433  456777777777664333343

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.18  E-value=8.3e-11  Score=115.89  Aligned_cols=234  Identities=16%  Similarity=0.100  Sum_probs=111.0

Q ss_pred             CCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653            5 PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus         5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~   84 (272)
                      +...+++|++|+++++.-...+   +...+.+++|++|++++|......+. ..+    .+++|+.|+++++.-...+|.
T Consensus       135 p~~~l~~L~~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~----~l~~L~~L~L~~n~l~~~~p~  206 (968)
T PLN00113        135 PRGSIPNLETLDLSNNMLSGEI---PNDIGSFSSLKVLDLGGNVLVGKIPN-SLT----NLTSLEFLTLASNQLVGQIPR  206 (968)
T ss_pred             CccccCCCCEEECcCCcccccC---ChHHhcCCCCCEEECccCcccccCCh-hhh----hCcCCCeeeccCCCCcCcCCh
Confidence            4456788999999886432222   33456688888888888743221111 111    456666666666543222222


Q ss_pred             Cccc-cccc-cc-----cccc---cccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC----
Q 045653           85 EVKR-HSIS-SN-----TKDS---QDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS----  150 (272)
Q Consensus        85 ~~~~-~~~~-~~-----~~~~---~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~----  150 (272)
                      .... ..+. +.     +...   .....++|+ .+++..+.-..   .++..+..+++|+.|++.+|++....+.    
T Consensus       207 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  282 (968)
T PLN00113        207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN-HLDLVYNNLTG---PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS  282 (968)
T ss_pred             HHcCcCCccEEECcCCccCCcCChhHhcCCCCC-EEECcCceecc---ccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence            1110 0000 00     0000   011123333 44444433221   2333445555666666665543321111    


Q ss_pred             ----------------CCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCc
Q 045653          151 ----------------QVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPC  214 (272)
Q Consensus       151 ----------------~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  214 (272)
                                      ..|..+..+++|++|++.++.-...+ + ..+..+++|+.|++.+|.--..++        ...
T Consensus       283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~-~~~~~l~~L~~L~L~~n~l~~~~p--------~~l  352 (968)
T PLN00113        283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-P-VALTSLPRLQVLQLWSNKFSGEIP--------KNL  352 (968)
T ss_pred             ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-C-hhHhcCCCCCEEECcCCCCcCcCC--------hHH
Confidence                            01112233444455544443222111 2 234445555555555442111111        113


Q ss_pred             cCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653          215 FVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       215 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      ..+++|+.|+++++.--..++...  ..+++|+.|++.+++-...+|.
T Consensus       353 ~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~  398 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPK  398 (968)
T ss_pred             hCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCH
Confidence            345899999999875444455544  5678899999987754344443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.88  E-value=1.2e-11  Score=105.79  Aligned_cols=107  Identities=20%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG  237 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  237 (272)
                      ..++|+.|.+..|..+++..-.....+.++|+.+++.+|..+..-.-..-..      ..|.||.|.+++|..+++....
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~------~C~~lr~lslshce~itD~gi~  391 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR------NCPRLRVLSLSHCELITDEGIR  391 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc------CCchhccCChhhhhhhhhhhhh
Confidence            4566666666666666655222233456666666666665443321101112      2489999999999888877321


Q ss_pred             C---ccccCCCcCEEeecCCCCCccccccccccccc
Q 045653          238 M---HTSEWPTLQSLEATGCDNLKIFGSELSSFCGN  270 (272)
Q Consensus       238 ~---~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~~~  270 (272)
                      .   .......|+.+++.+||.++.---+..+.|.+
T Consensus       392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~  427 (483)
T KOG4341|consen  392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN  427 (483)
T ss_pred             hhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence            1   11345678889999999887654455555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.80  E-value=6.7e-11  Score=101.29  Aligned_cols=237  Identities=17%  Similarity=0.160  Sum_probs=142.1

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCC-CccccceeccccCeEEecCCCCcccc---
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGE-ADVVTEGIFAQISCLSLGNLPQLTSF---   82 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~---   82 (272)
                      ..+||.++|.+.+|.++++. ........+++|+.+++..|..++..... ...    .+++|++|++++|+.+..-   
T Consensus       161 ~~CpnIehL~l~gc~~iTd~-s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~----gC~kL~~lNlSwc~qi~~~gv~  235 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDS-SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE----GCRKLKYLNLSWCPQISGNGVQ  235 (483)
T ss_pred             hhCCchhhhhhhcceeccHH-HHHHHHHhcchhhhhhhcccchhHHHHHHHHHH----hhhhHHHhhhccCchhhcCcch
Confidence            35688888888888877766 22233445788888888888877643211 001    4788888888888776651   


Q ss_pred             --ccCccccccc-cccc--------------cc-------cccccceee--------------cceeeeccCCCCccccc
Q 045653           83 --CREVKRHSIS-SNTK--------------DS-------QDQSMTAIT--------------CSYEVNLEDKLDTSTTL  124 (272)
Q Consensus        83 --~~~~~~~~~~-~~~~--------------~~-------~~~~~~~l~--------------~~l~i~~~~~~~~~~~~  124 (272)
                        ..+-..  ++ ...+              .+       .++....++              ..+....|.+. +...+
T Consensus       236 ~~~rG~~~--l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-~d~~l  312 (483)
T KOG4341|consen  236 ALQRGCKE--LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-TDEVL  312 (483)
T ss_pred             HHhccchh--hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC-chHHH
Confidence              111000  00 0000              00       000000011              02222222221 11122


Q ss_pred             ccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653          125 FNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII  203 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~  203 (272)
                      ..-..+.++|+.|.+.+| ++...   .....-.+++.|+.+.+..|....+--......+++.|+.+.++.|..+++. 
T Consensus       313 ~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-  388 (483)
T KOG4341|consen  313 WALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-  388 (483)
T ss_pred             HHHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-
Confidence            222356789999999999 55442   1111334789999999999887766422234568999999999999766554 


Q ss_pred             ccCCcccc-CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcc
Q 045653          204 SEDTAIQV-TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKI  259 (272)
Q Consensus       204 ~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~  259 (272)
                         ++.+. ....+...|+.+.+++|+.+++-.... ...++.|+.+++.+|...+.
T Consensus       389 ---gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  389 ---GIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             ---hhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhh
Confidence               22222 123445789999999999988776543 25789999999999988754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.65  E-value=7e-09  Score=92.69  Aligned_cols=231  Identities=17%  Similarity=0.195  Sum_probs=122.3

Q ss_pred             CCCCCCC---CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcc
Q 045653            4 VPCDAFP---LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLT   80 (272)
Q Consensus         4 ~~~~~~~---~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~   80 (272)
                      ++..+||   ++++|.|.+ ..++.+..  .....+.+|-.|++.+. .++..+...+.    .+|+|+.|++.. ++++
T Consensus       164 i~~~sfp~~~ni~~L~La~-N~It~l~~--~~F~~lnsL~tlkLsrN-rittLp~r~Fk----~L~~L~~LdLnr-N~ir  234 (873)
T KOG4194|consen  164 IPKPSFPAKVNIKKLNLAS-NRITTLET--GHFDSLNSLLTLKLSRN-RITTLPQRSFK----RLPKLESLDLNR-NRIR  234 (873)
T ss_pred             ccCCCCCCCCCceEEeecc-cccccccc--ccccccchheeeecccC-cccccCHHHhh----hcchhhhhhccc-ccee
Confidence            4566775   699999987 44444422  22335667888888775 33444332222    367777766642 2222


Q ss_pred             ccccCccc--cccc------cccccccccccceeec--ceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC
Q 045653           81 SFCREVKR--HSIS------SNTKDSQDQSMTAITC--SYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS  150 (272)
Q Consensus        81 ~~~~~~~~--~~~~------~~~~~~~~~~~~~l~~--~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~  150 (272)
                      -..-....  .+++      ..+..-+.+.+..+++  .+++....-..   .--+++..+++|+.|+++.+.+..|-.+
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~---vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA---VNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh---hhcccccccchhhhhccchhhhheeecc
Confidence            21000000  0000      0000011111222221  11111111100   1134566778888888888855554333


Q ss_pred             CCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeecc-------------------CCccc-
Q 045653          151 QVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE-------------------DTAIQ-  210 (272)
Q Consensus       151 ~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~-------------------~~~~~-  210 (272)
                          .....++|+.|++++ ++++.+ ++..+..+.+|++|+++.. +++.+...                   ..+++ 
T Consensus       312 ----~WsftqkL~~LdLs~-N~i~~l-~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  312 ----SWSFTQKLKELDLSS-NRITRL-DEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             ----hhhhcccceeEeccc-cccccC-ChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence                234678888888887 566666 5566666666666666653 34322200                   00010 


Q ss_pred             cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          211 VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ......+++|++|++.+ .+++.++..++ .+++.|++|++.+.+
T Consensus       385 a~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNA  427 (873)
T ss_pred             hhhhccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCc
Confidence            12344578999999977 58888887554 478899999988764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.57  E-value=4.1e-08  Score=87.89  Aligned_cols=47  Identities=13%  Similarity=0.083  Sum_probs=29.7

Q ss_pred             ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653          214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      +-++++|+.|++++ ..+.++..... ..+++|+.|++++. +++.++++
T Consensus       289 lfgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~  335 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEG  335 (873)
T ss_pred             ccccchhhhhccch-hhhheeecchh-hhcccceeEecccc-ccccCChh
Confidence            34567788888876 36666655432 24678888888754 56666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.36  E-value=1.5e-06  Score=82.71  Aligned_cols=83  Identities=25%  Similarity=0.226  Sum_probs=40.1

Q ss_pred             CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653          160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH  239 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  239 (272)
                      ++|++|.+.+| .++.+ |..   -.++|+.|++++| ++..++  ...        .++|+.|+++++ +++.+|... 
T Consensus       325 ~sL~~L~Ls~N-~Lt~L-P~~---l~~sL~~L~Ls~N-~L~~LP--~~l--------p~~L~~LdLs~N-~Lt~LP~~l-  386 (754)
T PRK15370        325 PGLKTLEAGEN-ALTSL-PAS---LPPELQVLDVSKN-QITVLP--ETL--------PPTITTLDVSRN-ALTNLPENL-  386 (754)
T ss_pred             ccceeccccCC-ccccC-Chh---hcCcccEEECCCC-CCCcCC--hhh--------cCCcCEEECCCC-cCCCCCHhH-
Confidence            45555555553 23333 321   1245666666654 233332  100        146666666665 455554432 


Q ss_pred             cccCCCcCEEeecCCCCCccccccc
Q 045653          240 TSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       240 ~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                         .+.|+.|+++++ +++.+|..+
T Consensus       387 ---~~sL~~LdLs~N-~L~~LP~sl  407 (754)
T PRK15370        387 ---PAALQIMQASRN-NLVRLPESL  407 (754)
T ss_pred             ---HHHHHHHhhccC-CcccCchhH
Confidence               124666666664 455555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.34  E-value=2.1e-08  Score=90.52  Aligned_cols=228  Identities=18%  Similarity=0.202  Sum_probs=112.4

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      .+.+|++|.+.+ .+|..+ +  .....+|.|+.+.+++. +|..-+..    .++ .+..|+.|+++. +.++..|.+.
T Consensus        53 ~lqkLEHLs~~H-N~L~~v-h--GELs~Lp~LRsv~~R~N-~LKnsGiP----~diF~l~dLt~lDLSh-NqL~EvP~~L  122 (1255)
T KOG0444|consen   53 RLQKLEHLSMAH-NQLISV-H--GELSDLPRLRSVIVRDN-NLKNSGIP----TDIFRLKDLTILDLSH-NQLREVPTNL  122 (1255)
T ss_pred             HHhhhhhhhhhh-hhhHhh-h--hhhccchhhHHHhhhcc-ccccCCCC----chhcccccceeeecch-hhhhhcchhh
Confidence            456788888876 566666 3  34457888998888875 44332211    233 678888888875 4555555421


Q ss_pred             cc--cccccc-----cccccccccceeec--ceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCC
Q 045653           87 KR--HSISSN-----TKDSQDQSMTAITC--SYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFP  157 (272)
Q Consensus        87 ~~--~~~~~~-----~~~~~~~~~~~l~~--~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~  157 (272)
                      ..  .++-+|     +++---.-+.+|+-  .+++.. +.   .+.+|....++.+|+.|+|+++.+..+...++    +
T Consensus       123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-Nr---Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL----P  194 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NR---LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL----P  194 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-ch---hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC----c
Confidence            11  000000     00000000111110  111111 11   12566667788888888888884433222222    2


Q ss_pred             CCCCcCEEEEecCcCCccccc----------------------hHHHhccccCcEEEeecCCCcceeeccCCccccCCcc
Q 045653          158 RFQSLTRLVVSNCHKLKYLFS----------------------ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCF  215 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~----------------------~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~  215 (272)
                      ++.+|+.|.+++-.+-.+-+|                      +..+-.+++|+.|++++. +++++.  .+...     
T Consensus       195 smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~--~~~~~-----  266 (1255)
T KOG0444|consen  195 SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELN--MTEGE-----  266 (1255)
T ss_pred             cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeee--ccHHH-----
Confidence            344444444444332222212                      133445555555555553 344443  12212     


Q ss_pred             CCCccCeeecccccccccccCCCccccCCCcCEEeecCCC-CCcccccccc
Q 045653          216 VFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD-NLKIFGSELS  265 (272)
Q Consensus       216 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~-~l~~l~~~~~  265 (272)
                       ..+|++|+++. .+++.+|...  ..+++|++|.+.+.. .+..+|+++.
T Consensus       267 -W~~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  267 -WENLETLNLSR-NQLTVLPDAV--CKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             -Hhhhhhhcccc-chhccchHHH--hhhHHHHHHHhccCcccccCCccchh
Confidence             25666666666 3666666655  456666666655432 1234665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.30  E-value=2.5e-07  Score=89.30  Aligned_cols=132  Identities=23%  Similarity=0.351  Sum_probs=85.8

Q ss_pred             ccccCCCCCccEEEeccccceEe---ccCCCCCCCCC-CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653          125 FNDKVRLPKLEALELHEINVEKI---WRSQVPAKFPR-FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL  200 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i---~~~~~~~~~~~-l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~  200 (272)
                      +.....+++|+.|.+.+|...++   |....  .... ++++..+.+.+|....++   .+..-.++|+.|.+.+|+.++
T Consensus       710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  710 ISSLGSLGNLEELSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             ecccccccCcceEEEEcCCCchhhccccccc--chhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccc
Confidence            34456788999999999954332   21111  1112 678888888889888877   455678999999999999888


Q ss_pred             eeeccCCcc-ccC-CccCCCccCee-ecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653          201 GIISEDTAI-QVT-PCFVFPRVSTL-RLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       201 ~~~~~~~~~-~~~-~~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      ++.+..... ... ....+..++.+ .+.+..++..+....  ..++.|+.+.+..||++..+|..
T Consensus       785 ~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  785 DIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             cCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence            776533221 111 13345566666 455555655555433  34556888888888888877754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.26  E-value=5.2e-08  Score=88.04  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=69.9

Q ss_pred             ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCc--cee
Q 045653          125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGL--LGI  202 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l--~~~  202 (272)
                      |+.+..+++|+.|+|+++++.+.-..     ...-.+|+.|.++. +.++.+ | ..+..++.|+.|.+.+. ++  +.+
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~~-----~~~W~~lEtLNlSr-NQLt~L-P-~avcKL~kL~kLy~n~N-kL~FeGi  308 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNMT-----EGEWENLETLNLSR-NQLTVL-P-DAVCKLTKLTKLYANNN-KLTFEGI  308 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeecc-----HHHHhhhhhhcccc-chhccc-h-HHHhhhHHHHHHHhccC-cccccCC
Confidence            44455566666666666655442111     11124455555554 344444 3 34556666766666543 22  222


Q ss_pred             eccCCcc-----------------ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCc
Q 045653          203 ISEDTAI-----------------QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLK  258 (272)
Q Consensus       203 ~~~~~~~-----------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~  258 (272)
                      +  .++.                 ..+.+...+.|+.|.+++ ..+.++|.+.  .-++.|+.|+++..|++-
T Consensus       309 P--SGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  309 P--SGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             c--cchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCcc
Confidence            2  1110                 012345568999999865 6888899988  568999999999999885

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.23  E-value=1.3e-06  Score=83.11  Aligned_cols=100  Identities=16%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV  211 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  211 (272)
                      ++|+.|++.+|.+..+ +.    .+  .++|+.|++.++ .+..+ |..   -.++|+.|++.+| .+..++.  ..   
T Consensus       325 ~sL~~L~Ls~N~Lt~L-P~----~l--~~sL~~L~Ls~N-~L~~L-P~~---lp~~L~~LdLs~N-~Lt~LP~--~l---  386 (754)
T PRK15370        325 PGLKTLEAGENALTSL-PA----SL--PPELQVLDVSKN-QITVL-PET---LPPTITTLDVSRN-ALTNLPE--NL---  386 (754)
T ss_pred             ccceeccccCCccccC-Ch----hh--cCcccEEECCCC-CCCcC-Chh---hcCCcCEEECCCC-cCCCCCH--hH---
Confidence            4566666666654442 11    11  256777777664 34444 321   1256677777765 3444431  11   


Q ss_pred             CCccCCCccCeeecccccccccccCCC--ccccCCCcCEEeecCCC
Q 045653          212 TPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLEATGCD  255 (272)
Q Consensus       212 ~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~i~~c~  255 (272)
                           .+.|+.|+++++ +++.+|...  ....++.+..|++.+.+
T Consensus       387 -----~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        387 -----PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -----HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence                 135666666663 555555432  11234566666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.17  E-value=1.5e-05  Score=75.97  Aligned_cols=34  Identities=9%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             ccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          219 RVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       219 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +|+.|++.+. +++.+|...  ..++.|+.|++++++
T Consensus       423 ~L~~L~Ls~N-qLt~LP~sl--~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRN-QLTRLPESL--IHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccC-cccccChHH--hhccCCCeEECCCCC
Confidence            4566666553 566666554  567778888887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.17  E-value=3.2e-06  Score=54.16  Aligned_cols=59  Identities=25%  Similarity=0.410  Sum_probs=39.8

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      |+|+.|++.+|++..+.++    .+..+++|++|++.+ +.+..+ +...+.++++|++|++.++
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            5677777777777765433    455677777777774 455565 5556677777777777765

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.13  E-value=1e-07  Score=81.98  Aligned_cols=35  Identities=14%  Similarity=0.058  Sum_probs=17.7

Q ss_pred             CCcceeeeccccc----ccccccccccccccCCccEEEEccC
Q 045653           10 PLLESLTLHNLIN----LERICIDRLKVDSFNELKTIKVESC   47 (272)
Q Consensus        10 ~~L~~L~L~~~~~----l~~~~~~~~~~~~~~~L~~L~l~~c   47 (272)
                      .+|++|.+.++.-    +..+   .......++|++++++++
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i---~~~l~~~~~l~~l~l~~~   61 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKAL---ASALRPQPSLKELCLSLN   61 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHH---HHHHhhCCCceEEecccc
Confidence            4577777776541    1111   112233456677776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.06  E-value=4.2e-05  Score=72.87  Aligned_cols=38  Identities=16%  Similarity=0.066  Sum_probs=22.2

Q ss_pred             CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653          218 PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       218 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      ++|+.|+++++ .++.++..     .+.|+.|+++++ +++.+|.
T Consensus       382 ~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~  419 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPM  419 (788)
T ss_pred             cccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCc
Confidence            36777777664 55554432     245777777765 3555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=3.1e-05  Score=68.14  Aligned_cols=17  Identities=18%  Similarity=0.360  Sum_probs=8.1

Q ss_pred             ccCeEEecCCCCccccc
Q 045653           67 QISCLSLGNLPQLTSFC   83 (272)
Q Consensus        67 ~L~~L~l~~c~~l~~~~   83 (272)
                      +|+.|.+++|..++.+|
T Consensus        73 sLtsL~Lsnc~nLtsLP   89 (426)
T PRK15386         73 ELTEITIENCNNLTTLP   89 (426)
T ss_pred             CCcEEEccCCCCcccCC
Confidence            35555555554444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.04  E-value=1.5e-07  Score=72.12  Aligned_cols=158  Identities=17%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcccc
Q 045653           10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRH   89 (272)
Q Consensus        10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~   89 (272)
                      .+...|.+++ ..++.+   ++....+.+|+.|++.+. ++...+...+     .+|+|++|++. ..++..+|.+..  
T Consensus        33 s~ITrLtLSH-NKl~~v---ppnia~l~nlevln~~nn-qie~lp~~is-----sl~klr~lnvg-mnrl~~lprgfg--   99 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVV---PPNIAELKNLEVLNLSNN-QIEELPTSIS-----SLPKLRILNVG-MNRLNILPRGFG--   99 (264)
T ss_pred             hhhhhhhccc-Cceeec---CCcHHHhhhhhhhhcccc-hhhhcChhhh-----hchhhhheecc-hhhhhcCccccC--
Confidence            3444555554 223333   455556777888877764 3444333222     37888888874 566666665532  


Q ss_pred             ccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653           90 SISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN  169 (272)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~  169 (272)
                                  ++|+++ .+++.-.+-.  ..++++.+..+..|+.|++.+++++.+.+     -.+.+.+|+.|.+++
T Consensus       100 ------------s~p~le-vldltynnl~--e~~lpgnff~m~tlralyl~dndfe~lp~-----dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen  100 ------------SFPALE-VLDLTYNNLN--ENSLPGNFFYMTTLRALYLGDNDFEILPP-----DVGKLTNLQILSLRD  159 (264)
T ss_pred             ------------CCchhh-hhhccccccc--cccCCcchhHHHHHHHHHhcCCCcccCCh-----hhhhhcceeEEeecc
Confidence                        256666 5555433221  12456666667788888888876665322     345788888888887


Q ss_pred             CcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653          170 CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS  204 (272)
Q Consensus       170 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  204 (272)
                       +.+..+ | ..++.+++|++|+|.|. .++-+++
T Consensus       160 -ndll~l-p-keig~lt~lrelhiqgn-rl~vlpp  190 (264)
T KOG0617|consen  160 -NDLLSL-P-KEIGDLTRLRELHIQGN-RLTVLPP  190 (264)
T ss_pred             -CchhhC-c-HHHHHHHHHHHHhcccc-eeeecCh
Confidence             444455 5 35677888888888874 4665553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.04  E-value=2.6e-07  Score=79.47  Aligned_cols=226  Identities=15%  Similarity=-0.002  Sum_probs=111.8

Q ss_pred             CCCCcceeeecccccccc----cccccccccccCCccEEEEccCccceeecCCCccccceec---cccCeEEecCCCCcc
Q 045653            8 AFPLLESLTLHNLINLER----ICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIF---AQISCLSLGNLPQLT   80 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l---~~L~~L~l~~c~~l~   80 (272)
                      .+++++++.+.++.. ..    +.........+++|++|++++|..-..... ...    .+   ++|++|++++|. +.
T Consensus        49 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~----~l~~~~~L~~L~ls~~~-~~  121 (319)
T cd00116          49 PQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG-VLE----SLLRSSSLQELKLNNNG-LG  121 (319)
T ss_pred             hCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH-HHH----HHhccCcccEEEeeCCc-cc
Confidence            446788888877532 21    000011223467999999998854321110 000    23   449999998874 32


Q ss_pred             ccccCcccccccccccccccccc-ceeecceeeeccCCCCc-ccccccccCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653           81 SFCREVKRHSISSNTKDSQDQSM-TAITCSYEVNLEDKLDT-STTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPR  158 (272)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~i~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~  158 (272)
                      +.........         .... +.++ .+++..|.-... ...+...+..+++|+.|++.+|.+.......++..+..
T Consensus       122 ~~~~~~l~~~---------l~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~  191 (319)
T cd00116         122 DRGLRLLAKG---------LKDLPPALE-KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA  191 (319)
T ss_pred             hHHHHHHHHH---------HHhCCCCce-EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh
Confidence            1100000000         0001 3444 566666553311 11233344566788888888886553111111112334


Q ss_pred             CCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          159 FQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      +++|++|++++|. +.+...   ...+..+++|++|++++|. +............  ....+.|++|++++| .+++..
T Consensus       192 ~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~--~~~~~~L~~L~l~~n-~i~~~~  266 (319)
T cd00116         192 NCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASAL--LSPNISLLTLSLSCN-DITDDG  266 (319)
T ss_pred             CCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHH--hccCCCceEEEccCC-CCCcHH
Confidence            5688888888864 332211   1234567788888888874 4321100000000  001368888888887 443211


Q ss_pred             CC---CccccCCCcCEEeecCCC
Q 045653          236 PG---MHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       236 ~~---~~~~~~~~L~~L~i~~c~  255 (272)
                      ..   .....++.|++++++++.
T Consensus       267 ~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         267 AKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHHhcCCCccEEECCCCC
Confidence            10   011445778888888763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.02  E-value=7.6e-07  Score=83.65  Aligned_cols=113  Identities=22%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653          125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS  204 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  204 (272)
                      +..+..+++||.|+++++++..+...    .+.+++.|++|.+++ ++++.+ | .....+..|+.|.-++. .|..++ 
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSG-NkL~~L-p-~tva~~~~L~tL~ahsN-~l~~fP-  446 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSG-NKLTTL-P-DTVANLGRLHTLRAHSN-QLLSFP-  446 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHH----HHhchHHhHHHhccc-chhhhh-h-HHHHhhhhhHHHhhcCC-ceeech-
Confidence            34455666666666666655543222    233556666666666 555555 4 34455566665554442 233333 


Q ss_pred             cCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653          205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~  256 (272)
                              ++..++.|+.++++ |.+|+.+..... ..+|.|++|+++|..+
T Consensus       447 --------e~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 --------ELAQLPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             --------hhhhcCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCcc
Confidence                    23335888888885 467776655432 2447899999988775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=7.8e-07  Score=77.17  Aligned_cols=213  Identities=16%  Similarity=0.170  Sum_probs=114.4

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce--eccccCeEEecCCCCccccccC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSLGNLPQLTSFCRE   85 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~   85 (272)
                      .+..|++..|++++ +..... ......|+++++|++++.-. ..+..    ..++  +||+|+.|+++. +++..+...
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~-~~~~k~~~~v~~LdLS~NL~-~nw~~----v~~i~eqLp~Le~LNls~-Nrl~~~~~s  190 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGI-EEYSKILPNVRDLDLSRNLF-HNWFP----VLKIAEQLPSLENLNLSS-NRLSNFISS  190 (505)
T ss_pred             hHHhhhheeecCcc-ccccch-hhhhhhCCcceeecchhhhH-HhHHH----HHHHHHhcccchhccccc-ccccCCccc
Confidence            45678888888863 222211 12445689999999997411 11110    0111  689999999985 466555443


Q ss_pred             ccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCE
Q 045653           86 VKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTR  164 (272)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~  164 (272)
                      .....            +++++ .+.+..|+-.-.  .+....-.+|+|+.|++.+++ +..   ...+  ..-+..|+.
T Consensus       191 ~~~~~------------l~~lK-~L~l~~CGls~k--~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~--~~i~~~L~~  250 (505)
T KOG3207|consen  191 NTTLL------------LSHLK-QLVLNSCGLSWK--DVQWILLTFPSLEVLYLEANEIILI---KATS--TKILQTLQE  250 (505)
T ss_pred             cchhh------------hhhhh-eEEeccCCCCHH--HHHHHHHhCCcHHHhhhhcccccce---ecch--hhhhhHHhh
Confidence            32221            44555 666666654311  111123457888888887772 211   1111  123677888


Q ss_pred             EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653          165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP  244 (272)
Q Consensus       165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  244 (272)
                      |++++.+-+ +.........+|.|..|++..| .+.++...+.. .......||+|+.|++... ++.++..-.+...++
T Consensus       251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~  326 (505)
T KOG3207|consen  251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVE-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLE  326 (505)
T ss_pred             ccccCCccc-ccccccccccccchhhhhcccc-CcchhcCCCcc-chhhhcccccceeeecccC-ccccccccchhhccc
Confidence            888774433 3212234566778888777776 35444322221 1123455788888888763 454443322223445


Q ss_pred             CcCEEeec
Q 045653          245 TLQSLEAT  252 (272)
Q Consensus       245 ~L~~L~i~  252 (272)
                      +|+.|.+.
T Consensus       327 nlk~l~~~  334 (505)
T KOG3207|consen  327 NLKHLRIT  334 (505)
T ss_pred             hhhhhhcc
Confidence            55555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.91  E-value=4.4e-07  Score=82.37  Aligned_cols=63  Identities=25%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             CCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          131 LPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       131 l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +++|+.|.+.+| .++.   ..+..+...+++|++|++++|..+++........++++|+.+.+..+
T Consensus       268 c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             CCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            677777777666 3332   22222334567788888887777755422233455666666554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.88  E-value=5.3e-05  Score=48.42  Aligned_cols=40  Identities=33%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH  171 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~  171 (272)
                      +..+++|+.|+++++++..+.++    .+..+++|++|++.+++
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSS
T ss_pred             HcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCc
Confidence            46789999999999988886555    46789999999998864

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=5.2e-07  Score=74.81  Aligned_cols=89  Identities=21%  Similarity=0.205  Sum_probs=61.0

Q ss_pred             CCccEEEeccc--cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653          132 PKLEALELHEI--NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       132 ~~L~~L~L~~~--~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  209 (272)
                      ++|++|+|+||  ++..   ..+......+|+|.+|++++|..+++- ....+-.++.|++|+++.|-.+..-.   .  
T Consensus       286 e~l~~LNlsG~rrnl~~---sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~---~--  356 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQK---SHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPET---L--  356 (419)
T ss_pred             hhhhhhhhhhhHhhhhh---hHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHH---e--
Confidence            68999999998  3432   111112346899999999999998874 44567789999999999996542111   0  


Q ss_pred             ccCCccCCCccCeeeccccccc
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKL  231 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l  231 (272)
                        -+....|+|..|++.+|-.=
T Consensus       357 --~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  357 --LELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             --eeeccCcceEEEEeccccCc
Confidence              11234589999999887543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.83  E-value=1.1e-05  Score=63.03  Aligned_cols=108  Identities=22%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  209 (272)
                      .+.+|+.|++++|.++.+  .    .+..+++|+.|.+.+ ++++++ +......+|+|++|++++. ++.++..     
T Consensus        40 ~l~~L~~L~Ls~N~I~~l--~----~l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~-----  105 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKL--E----GLPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNN-KISDLNE-----  105 (175)
T ss_dssp             T-TT--EEE-TTS--S----T----T----TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SCCC-----
T ss_pred             hhcCCCEEECCCCCCccc--c----CccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCC-cCCChHH-----
Confidence            467899999999977764  1    244688999998887 677776 4333356899999998874 4544431     


Q ss_pred             ccCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecC
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATG  253 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~  253 (272)
                       ......+|+|+.|.+.+.|-- ....  ......+|+|+.|+-..
T Consensus       106 -l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  106 -LEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -CGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred             -hHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence             122344689999999876532 2222  11235678888887543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.81  E-value=6.1e-07  Score=68.79  Aligned_cols=65  Identities=22%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653          125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL  195 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  195 (272)
                      +..+..+|.|+.|++..+++.+   ..+|..|.++..|+-|++.+ +....+ | ...+++++||-|.+.+
T Consensus        95 prgfgs~p~levldltynnl~e---~~lpgnff~m~tlralyl~d-ndfe~l-p-~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLTYNNLNE---NSLPGNFFYMTTLRALYLGD-NDFEIL-P-PDVGKLTNLQILSLRD  159 (264)
T ss_pred             ccccCCCchhhhhhcccccccc---ccCCcchhHHHHHHHHHhcC-CCcccC-C-hhhhhhcceeEEeecc
Confidence            3444555555555555554443   23333444455555555544 233322 3 2344555555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=6e-05  Score=66.34  Aligned_cols=16  Identities=25%  Similarity=0.582  Sum_probs=8.5

Q ss_pred             CCcCEEEEecCcCCcc
Q 045653          160 QSLTRLVVSNCHKLKY  175 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~  175 (272)
                      ++|++|.+.+|..+..
T Consensus        94 ~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         94 EGLEKLTVCHCPEISG  109 (426)
T ss_pred             hhhhheEccCcccccc
Confidence            4555555555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.67  E-value=1.1e-06  Score=79.76  Aligned_cols=69  Identities=30%  Similarity=0.354  Sum_probs=50.8

Q ss_pred             CCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653          129 VRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL  200 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~  200 (272)
                      ..+++|+.|++..+. +..+.-..   ....+++|++|.+.+|..+++..-......+++|++|++++|..++
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~---l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSA---LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHH---HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            456889999999883 44421111   1224899999999999987776445566789999999999998873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.60  E-value=5.8e-05  Score=59.08  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=7.3

Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL  195 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  195 (272)
                      +.+|+.|++++ +.++.+   +.+..++.|+.|++++
T Consensus        41 l~~L~~L~Ls~-N~I~~l---~~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen   41 LDKLEVLDLSN-NQITKL---EGLPGLPRLKTLDLSN   73 (175)
T ss_dssp             -TT--EEE-TT-S--S-----TT----TT--EEE--S
T ss_pred             hcCCCEEECCC-CCCccc---cCccChhhhhhcccCC
Confidence            34444444444 233333   2334444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=2e-05  Score=68.66  Aligned_cols=113  Identities=19%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  209 (272)
                      .+++|+.|.|.+|++.  |-+. ......+|+|+.|++.+...+..  ....-..+..|++|++++.+.+..-       
T Consensus       195 ~l~~lK~L~l~~CGls--~k~V-~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~-------  262 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLS--WKDV-QWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFD-------  262 (505)
T ss_pred             hhhhhheEEeccCCCC--HHHH-HHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccc-------
Confidence            4566777777776443  1111 11222466777776665432211  1112234566777777765433211       


Q ss_pred             ccCCccCCCccCeeecccccccccccCCC-----ccccCCCcCEEeecCCC
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGM-----HTSEWPTLQSLEATGCD  255 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~L~~L~i~~c~  255 (272)
                      +...+..||.|..|++..+ ++.++-...     ....+++|++|.+...+
T Consensus       263 ~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  263 QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence            1123456788999888876 555554322     23578999999987664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.44  E-value=2e-06  Score=74.17  Aligned_cols=112  Identities=22%  Similarity=0.273  Sum_probs=84.5

Q ss_pred             ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      .+|+.+..+.+|+-|++..+++.. .    | .|+++..|+++++.. +.+..+ |.+....+++|..|++.+. ++.++
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~~-l----P-ef~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDLRdN-klke~  267 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIRF-L----P-EFPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDLRDN-KLKEV  267 (565)
T ss_pred             cCChhhcchhhhHHHHhhhccccc-C----C-CCCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeecccc-ccccC
Confidence            677778888999999999987776 2    2 366889999998876 555555 8788888999999999985 67777


Q ss_pred             eccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +  ++      +..+.+|+.|++++ ..++.++...  +++ .|+.|.+.|.|
T Consensus       268 P--de------~clLrsL~rLDlSN-N~is~Lp~sL--gnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  268 P--DE------ICLLRSLERLDLSN-NDISSLPYSL--GNL-HLKFLALEGNP  308 (565)
T ss_pred             c--hH------HHHhhhhhhhcccC-CccccCCccc--ccc-eeeehhhcCCc
Confidence            7  22      33357788899887 4777777766  666 77778777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.43  E-value=0.00012  Score=71.01  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=10.4

Q ss_pred             HhccccCcEEEeecCCC
Q 045653          182 IRSVEQLQHLDICLCKG  198 (272)
Q Consensus       182 ~~~l~~L~~L~i~~c~~  198 (272)
                      ...+.+|+.|.|.+|..
T Consensus       713 ~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  713 LGSLGNLEELSILDCGI  729 (889)
T ss_pred             cccccCcceEEEEcCCC
Confidence            34566666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.40  E-value=1.7e-05  Score=68.36  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|.+--+.-+++.|+. ..++.+.  +...+.+++|++|+++.. ++..+.++...    .+++|..|.+.+-.++++++
T Consensus        61 VP~~LP~~tveirLdq-N~I~~iP--~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~----GL~~l~~Lvlyg~NkI~~l~  132 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQ-NQISSIP--PGAFKTLHRLRRLDLSKN-NISFIAPDAFK----GLASLLSLVLYGNNKITDLP  132 (498)
T ss_pred             CcccCCCcceEEEecc-CCcccCC--hhhccchhhhceeccccc-chhhcChHhhh----hhHhhhHHHhhcCCchhhhh
Confidence            3444445677788875 4555552  244567899999999986 56666665544    47888888888888999988


Q ss_pred             cCccc
Q 045653           84 REVKR   88 (272)
Q Consensus        84 ~~~~~   88 (272)
                      .+...
T Consensus       133 k~~F~  137 (498)
T KOG4237|consen  133 KGAFG  137 (498)
T ss_pred             hhHhh
Confidence            76444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.40  E-value=2.1e-05  Score=74.26  Aligned_cols=87  Identities=30%  Similarity=0.473  Sum_probs=63.7

Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      +.++++|+.|++.| +++... |...+.++..|++|+++|. +++.++  +....      +++|++|...+ .++..+|
T Consensus       379 l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGN-kL~~Lp--~tva~------~~~L~tL~ahs-N~l~~fP  446 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGN-KLTTLP--DTVAN------LGRLHTLRAHS-NQLLSFP  446 (1081)
T ss_pred             hccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccc-hhhhhh--HHHHh------hhhhHHHhhcC-Cceeech
Confidence            55678888888888 666655 7778888888888888884 566666  32222      38888888765 4787887


Q ss_pred             CCCccccCCCcCEEeecCCCCCc
Q 045653          236 PGMHTSEWPTLQSLEATGCDNLK  258 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~~c~~l~  258 (272)
                      . .  ..++.|+.++++ |.+|+
T Consensus       447 e-~--~~l~qL~~lDlS-~N~L~  465 (1081)
T KOG0618|consen  447 E-L--AQLPQLKVLDLS-CNNLS  465 (1081)
T ss_pred             h-h--hhcCcceEEecc-cchhh
Confidence            3 3  578899999987 66665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=4.9e-05  Score=71.85  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      ..+||+|..|+|++++++.++      +...+++|+.|.+++.+--..- --..+-+|++|+.|||+.=.....-.... 
T Consensus       169 c~sFpNL~sLDIS~TnI~nl~------GIS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~-  240 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNLS------GISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIE-  240 (699)
T ss_pred             hhccCccceeecCCCCccCcH------HHhccccHHHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHH-
Confidence            357889999999988776641      3446888888888774432211 11345578888888888643322210000 


Q ss_pred             ccccCCccCCCccCeeeccc
Q 045653          208 AIQVTPCFVFPRVSTLRLID  227 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~  227 (272)
                       ...+....+|.||.|+.++
T Consensus       241 -qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  241 -QYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             -HHHHhcccCccccEEecCC
Confidence             1112223368888888774

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.29  E-value=8.1e-07  Score=76.49  Aligned_cols=131  Identities=18%  Similarity=0.156  Sum_probs=78.0

Q ss_pred             ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      ++++.+..+.+|.+|.+.++++++..++     ...++.|++|+... +-++.+ |+ .++++.+|+.|++... ++..+
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~~l~~~-----~i~m~~L~~ld~~~-N~L~tl-P~-~lg~l~~L~~LyL~~N-ki~~l  221 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLKALPEN-----HIAMKRLKHLDCNS-NLLETL-PP-ELGGLESLELLYLRRN-KIRFL  221 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchhhCCHH-----HHHHHHHHhcccch-hhhhcC-Ch-hhcchhhhHHHHhhhc-ccccC
Confidence            4555556666777777777766553222     22355666655433 233333 43 3455555555555442 23333


Q ss_pred             eccCCc-------------c--ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccccc
Q 045653          203 ISEDTA-------------I--QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELSS  266 (272)
Q Consensus       203 ~~~~~~-------------~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~  266 (272)
                      +..++-             +  ..+....++++..|++.. .++++.|.+.  .-+.+|++|++++. .++++|....+
T Consensus       222 Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSNN-~is~Lp~sLgn  296 (565)
T KOG0472|consen  222 PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSNN-DISSLPYSLGN  296 (565)
T ss_pred             CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHH--HHhhhhhhhcccCC-ccccCCccccc
Confidence            321111             0  001234679999999988 5999999987  66889999999965 68888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=1.6e-05  Score=66.19  Aligned_cols=124  Identities=18%  Similarity=0.223  Sum_probs=77.3

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+.+|+.|.|.|.++.+-...    .+..-.+|+.|++..|.+++.-...-.+.++..|++|++++|...++... -.
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v~  280 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT-VA  280 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-HH
Confidence            45677788888887755431111    12246889999999999998765555778999999999999976544321 00


Q ss_pred             cccc---------------------C-CccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653          208 AIQV---------------------T-PCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL  257 (272)
Q Consensus       208 ~~~~---------------------~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  257 (272)
                      ..+.                     + -....|+|.+|+++.|..++.-... ..-.++.|++|.++.|..+
T Consensus       281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCC
Confidence            0000                     0 0112367777777777666652211 1135677788888777754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.03  E-value=0.00022  Score=59.74  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec-------
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS-------  204 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~-------  204 (272)
                      ..|++++++++.++.| ++.    +.-.|.++.|.+++ +++..+   ..++.+++|++|++++. .+.++-.       
T Consensus       284 q~LtelDLS~N~I~~i-DES----vKL~Pkir~L~lS~-N~i~~v---~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGN  353 (490)
T KOG1259|consen  284 QELTELDLSGNLITQI-DES----VKLAPKLRRLILSQ-NRIRTV---QNLAELPQLQLLDLSGN-LLAECVGWHLKLGN  353 (490)
T ss_pred             hhhhhccccccchhhh-hhh----hhhccceeEEeccc-cceeee---hhhhhcccceEeecccc-hhHhhhhhHhhhcC
Confidence            3455666666544442 121    22345566666655 344444   23455566666666553 1211100       


Q ss_pred             -------cCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          205 -------EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       205 -------~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                             ...++...+..-+-+|..|++++ .+++.+..-.+.+.+|+|+.+.+.+.|
T Consensus       354 IKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  354 IKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             EeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence                   00011112233446778888876 366666654444788999999888876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.62  E-value=0.0024  Score=37.74  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=25.2

Q ss_pred             CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          218 PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       218 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      ++|+.|+++++ ++++++...  ..++.|+.|+++++ .+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l--~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPEL--SNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHG--TTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchH--hCCCCCCEEEecCC-CCCCCc
Confidence            45777777765 676766544  57777777777777 465543

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.00039  Score=54.85  Aligned_cols=70  Identities=21%  Similarity=0.365  Sum_probs=52.4

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .++.++.|.+.+|.++.+++..... +-+++|+.|+|++|+.++..+.....    .|++|+.|.+++.+.+.+.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~----~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLL----KLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHH----HhhhhHHHHhcCchhhhch
Confidence            4577889999999999999754322 25799999999999998865432111    6889999999988766553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.23  E-value=0.00058  Score=57.24  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL  195 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  195 (272)
                      ..+++|..|+++++.+.++ .+    |...+-+.+.|.+.. +.+.++   +.++.+-+|..|++.+
T Consensus       326 a~L~~L~~LDLS~N~Ls~~-~G----wh~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLAEC-VG----WHLKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSS  383 (490)
T ss_pred             hhcccceEeecccchhHhh-hh----hHhhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccc
Confidence            3445555555555533321 11    122345555555554 334444   3444555555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.22  E-value=0.0015  Score=62.02  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ..||+|+.|.+.+-.+..-+   ......+||+|.+|+|+++ .++++   .+.+.+++|+.|.+.+.. ++.      .
T Consensus       145 ~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe-~e~------~  210 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLE-FES------Y  210 (699)
T ss_pred             hhCcccceEEecCceecchh---HHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCC-CCc------h
Confidence            46899999998886332211   1112446899999999884 45566   567888888888877652 211      1


Q ss_pred             cccCCccCCCccCeeecccccccccc--cCCC--ccccCCCcCEEeecCC
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFF--YPGM--HTSEWPTLQSLEATGC  254 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~--~~~~~~~L~~L~i~~c  254 (272)
                      .+...+..+.+|+.|+++.-++....  ....  ....+|.|+.|+.++-
T Consensus       211 ~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  211 QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            11112344689999999865443332  1100  1145788888887743

>PLN03150 hypothetical protein; Provisional

Probab=96.08  E-value=0.013  Score=55.49  Aligned_cols=113  Identities=14%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             ccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCC
Q 045653          134 LEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTP  213 (272)
Q Consensus       134 L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  213 (272)
                      ++.|+|.++.+...    +|..+..+++|+.|++.++. +...+| ..+..+++|+.|+++++. +....+ +      .
T Consensus       420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~-l~g~iP-~~~~~l~~L~~LdLs~N~-lsg~iP-~------~  485 (623)
T PLN03150        420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNS-IRGNIP-PSLGSITSLEVLDLSYNS-FNGSIP-E------S  485 (623)
T ss_pred             EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCc-ccCcCC-hHHhCCCCCCEEECCCCC-CCCCCc-h------H
Confidence            66777777755432    23345578888888888754 333324 356788888888888863 432221 1      1


Q ss_pred             ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      +..+++|+.|+++++.--..+|.... .....+..+++.+++.+...|
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence            23358888888887654445554331 122355677777766655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.60  E-value=0.014  Score=51.79  Aligned_cols=106  Identities=18%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  209 (272)
                      ..++|+.|+++++++..+...     ......|+++.+.+-+.+..+   ..+..+..+..+.+.+. .+..++  .   
T Consensus       184 ~~~~L~~L~ls~N~i~~l~~~-----~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n-~~~~~~--~---  249 (394)
T COG4886         184 NLSNLNNLDLSGNKISDLPPE-----IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNN-KLEDLP--E---  249 (394)
T ss_pred             hhhhhhheeccCCccccCchh-----hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCc-eeeecc--c---
Confidence            456666666666655542211     112334666666653322222   23445555555543221 222211  1   


Q ss_pred             ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~  256 (272)
                         ....+++++.|++++. .+++++. .  ....+++.|++++-.-
T Consensus       250 ---~~~~l~~l~~L~~s~n-~i~~i~~-~--~~~~~l~~L~~s~n~~  289 (394)
T COG4886         250 ---SIGNLSNLETLDLSNN-QISSISS-L--GSLTNLRELDLSGNSL  289 (394)
T ss_pred             ---hhccccccceeccccc-ccccccc-c--cccCccCEEeccCccc
Confidence               1222366777777664 6666655 2  4667777777776433

>PLN03150 hypothetical protein; Provisional

Probab=95.53  E-value=0.029  Score=53.10  Aligned_cols=69  Identities=17%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653          123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      .++..+..+++|+.|+|.+|++...    +|..+..+++|+.|++.++.--..+ | ..+.++++|+.|+++++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~i-P-~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSI-P-ESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCC-c-hHHhcCCCCCEEECcCCc
Confidence            3455567889999999999977642    3334668999999999986443333 4 567899999999999874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.42  E-value=0.0072  Score=52.58  Aligned_cols=88  Identities=24%  Similarity=0.366  Sum_probs=66.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+|+|++|+++++.++.|-++    +|.....+++|.+.. +++..+ ....+.++..|+.|++.+. +|+-+.+  +
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N-~it~~~~--~  340 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDN-QITTVAP--G  340 (498)
T ss_pred             HhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCC-eeEEEec--c
Confidence            57899999999999988876555    577889999999987 677776 6678889999999999985 5766652  2


Q ss_pred             ccccCCccCCCccCeeeccccc
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      .     ...+.+|.+|++-..+
T Consensus       341 a-----F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  341 A-----FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             c-----ccccceeeeeehccCc
Confidence            2     1123677777775443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.38  E-value=0.022  Score=33.62  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=16.2

Q ss_pred             CcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          161 SLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       161 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +|++|++.+ ..++++ ++ .+.++++|+.|+++++
T Consensus         2 ~L~~L~l~~-N~i~~l-~~-~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSN-NQITDL-PP-ELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETS-SS-SSH-GG-HGTTCTTSSEEEETSS
T ss_pred             cceEEEccC-CCCccc-Cc-hHhCCCCCCEEEecCC
Confidence            455555555 344444 32 2455666666666655

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.36  E-value=0.00088  Score=62.39  Aligned_cols=59  Identities=27%  Similarity=0.319  Sum_probs=43.1

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL  195 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  195 (272)
                      +.++++|+.|+|+.+.+..+...    ....+. |+.|.+++ +.++.+   ..+.++.+|+.|++++
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l----~~~gc~-L~~L~lrn-N~l~tL---~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQL----SMVGCK-LQLLNLRN-NALTTL---RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhcccccccccccchhcccccc----chhhhh-heeeeecc-cHHHhh---hhHHhhhhhhccchhH
Confidence            46789999999998866653222    122455 88888887 666666   5678899999999987

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.0089  Score=47.36  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             CccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653          173 LKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT  252 (272)
Q Consensus       173 l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~  252 (272)
                      +... +...+.++++++.|.+.+|..+.+-.    .+...  ...|+|+.|+|++|+++++-...- ...+++|+.|.+.
T Consensus       113 I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~  184 (221)
T KOG3864|consen  113 IMYE-GLEHLRDLRSIKSLSLANCKYFDDWC----LERLG--GLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLY  184 (221)
T ss_pred             HHHH-HHHHHhccchhhhheeccccchhhHH----HHHhc--ccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhc
Confidence            3344 55667788999999999997664432    21111  135999999999999999876532 2468899999998


Q ss_pred             CCCCCc
Q 045653          253 GCDNLK  258 (272)
Q Consensus       253 ~c~~l~  258 (272)
                      +.+...
T Consensus       185 ~l~~v~  190 (221)
T KOG3864|consen  185 DLPYVA  190 (221)
T ss_pred             Cchhhh
Confidence            876543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.61  E-value=0.058  Score=42.91  Aligned_cols=89  Identities=19%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec--CcCCccccchHHHhccccCcEEEeecCCCcceeecc
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN--CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~--c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      +-+++.|..|.+.++++..|-+.-    ...+++|..|.+.+  ..++.++   ..+..+|+|++|.+.+.+ +++-.. 
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L----~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~Np-v~~k~~-  130 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDL----DTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGNP-VEHKKN-  130 (233)
T ss_pred             CCCccccceEEecCCcceeeccch----hhhccccceEEecCcchhhhhhc---chhccCCccceeeecCCc-hhcccC-
Confidence            356788888899888888765542    23578888888886  2334444   456788889998888754 322221 


Q ss_pred             CCccccCCccCCCccCeeecccc
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                       ...+  .+..+|+|+.|++..-
T Consensus       131 -YR~y--vl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  131 -YRLY--VLYKLPSLRTLDFQKV  150 (233)
T ss_pred             -ceeE--EEEecCcceEeehhhh
Confidence             0111  1233588888887643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.96  E-value=0.045  Score=25.12  Aligned_cols=16  Identities=19%  Similarity=0.324  Sum_probs=7.1

Q ss_pred             CcCEEeecCCCCCcccc
Q 045653          245 TLQSLEATGCDNLKIFG  261 (272)
Q Consensus       245 ~L~~L~i~~c~~l~~l~  261 (272)
                      +|+.|++++|. ++++|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            45666666665 55543

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=93.58  E-value=0.046  Score=48.58  Aligned_cols=60  Identities=27%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +..+.++..+.+.++++..+     +.....++++++|++.+ +.+.++ +  .+..+.+|+.|++++.
T Consensus       228 ~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~-n~i~~i-~--~~~~~~~l~~L~~s~n  287 (394)
T COG4886         228 LSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSN-NQISSI-S--SLGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhcccccccccCCceeeec-----cchhccccccceecccc-cccccc-c--cccccCccCEEeccCc
Confidence            34555666666555544331     11233566677777776 445555 2  2566777777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.52  E-value=0.18  Score=40.24  Aligned_cols=108  Identities=17%  Similarity=0.304  Sum_probs=73.6

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ  210 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  210 (272)
                      ......+++.++++..+  .    .++.++.|..|.+.+ ++++.+ .+....-+++|+.|.+.+. +++++..-+.   
T Consensus        41 ~d~~d~iDLtdNdl~~l--~----~lp~l~rL~tLll~n-NrIt~I-~p~L~~~~p~l~~L~LtnN-si~~l~dl~p---  108 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--D----NLPHLPRLHTLLLNN-NRITRI-DPDLDTFLPNLKTLILTNN-SIQELGDLDP---  108 (233)
T ss_pred             ccccceecccccchhhc--c----cCCCccccceEEecC-Ccceee-ccchhhhccccceEEecCc-chhhhhhcch---
Confidence            34667788888866542  1    355789999999987 788888 5466777899999999984 5766653333   


Q ss_pred             cCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecCC
Q 045653          211 VTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~c  254 (272)
                         ...+|+|+.|.+-+.+ .+.-..  ......+|+|+.|++.+-
T Consensus       109 ---La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  109 ---LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ---hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence               3345999999887642 222221  223356788888887753

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=0.0021  Score=53.39  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=60.1

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ  210 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  210 (272)
                      +.+.++|+..||.+..|.      +...++.|+.|.++= ++++.+   ..+..|++|++|.+... .|..+-   ...+
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSv-NkIssL---~pl~rCtrLkElYLRkN-~I~sld---EL~Y   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSV-NKISSL---APLQRCTRLKELYLRKN-CIESLD---ELEY   83 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeec-cccccc---hhHHHHHHHHHHHHHhc-ccccHH---HHHH
Confidence            456778888888666542      122567788887764 566666   44677888888877752 233221   1111


Q ss_pred             cCCccCCCccCeeecccccccccccC---CCccccCCCcCEEe
Q 045653          211 VTPCFVFPRVSTLRLIDLPKLRFFYP---GMHTSEWPTLQSLE  250 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~  250 (272)
                         +..+|+|++|+|...+.-..-+.   ......+|+|++|+
T Consensus        84 ---LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 ---LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ---HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence               23458888888876655433322   11224567777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.90  E-value=0.06  Score=44.34  Aligned_cols=111  Identities=16%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC--cCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC--HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c--~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      +.+|+.|++.++.+..+.      .++.+++|++|.+++.  .-...+ . .....+|+|+++++++. ++..+.     
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l-~-vl~e~~P~l~~l~ls~N-ki~~ls-----  107 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGL-E-VLAEKAPNLKVLNLSGN-KIKDLS-----  107 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccc-e-ehhhhCCceeEEeecCC-cccccc-----
Confidence            455666666666555421      3456788888888764  222222 1 23456688888888874 343322     


Q ss_pred             cccCCccCCCccCeeecccccccccccC--CCccccCCCcCEEeecCCCCC
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHTSEWPTLQSLEATGCDNL  257 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~i~~c~~l  257 (272)
                       ...+...+.+|.+|++.+|+-.. +..  ..++.-+++|.+|+-.++..-
T Consensus       108 -tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  108 -TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             -ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence             11223345778888887775443 222  112345677777776655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.59  E-value=0.0012  Score=61.46  Aligned_cols=81  Identities=22%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +.-+|+|+.|+|+++++..+ .     .+..++.|++|+|.+ +.+..+ |.-...++. |+.|.+.+. .++.+.   +
T Consensus       183 Lqll~ale~LnLshNk~~~v-~-----~Lr~l~~LkhLDlsy-N~L~~v-p~l~~~gc~-L~~L~lrnN-~l~tL~---g  249 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKV-D-----NLRRLPKLKHLDLSY-NCLRHV-PQLSMVGCK-LQLLNLRNN-ALTTLR---G  249 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhh-H-----HHHhccccccccccc-chhccc-cccchhhhh-heeeeeccc-HHHhhh---h
Confidence            45567888888888755542 1     133577888888876 444444 432333444 777777763 233332   2


Q ss_pred             ccccCCccCCCccCeeeccc
Q 045653          208 AIQVTPCFVFPRVSTLRLID  227 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~  227 (272)
                      ++.      +.+|+.|+++.
T Consensus       250 ie~------LksL~~LDlsy  263 (1096)
T KOG1859|consen  250 IEN------LKSLYGLDLSY  263 (1096)
T ss_pred             HHh------hhhhhccchhH
Confidence            222      35666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.40  E-value=1.6  Score=31.59  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +...++|+.+.+.. .++.|...    .+..+++|+.+.+.+  .+..+ +...+.++++|+.+.+.+  .+..+.. ..
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~~-~~   76 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPN--NLTSI-GDNAFSNCKSLESITFPN--NLKSIGD-NA   76 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESS--TTSCE--TTTTTT-TT-EEEEETS--TT-EE-T-TT
T ss_pred             HhCCCCCCEEEECC-CeeEeChh----hcccccccccccccc--ccccc-ceeeeecccccccccccc--ccccccc-cc
Confidence            35566788888775 34454333    355677888888865  35555 445667777788888854  3444431 11


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      ...      .++++.+.+..  ++..+..... .++ .++.+.+.+  +++.++
T Consensus        77 F~~------~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~--~~~~i~  118 (129)
T PF13306_consen   77 FSN------CTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS--NITKIE  118 (129)
T ss_dssp             TTT-------TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT--B-SS--
T ss_pred             ccc------cccccccccCc--cccEEchhhh-cCC-CceEEEECC--CccEEC
Confidence            112      37788887743  4555555443 344 777777654  444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.34  E-value=0.083  Score=25.94  Aligned_cols=19  Identities=32%  Similarity=0.457  Sum_probs=12.7

Q ss_pred             CcCEEeecCCCCCccccccc
Q 045653          245 TLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       245 ~L~~L~i~~c~~l~~l~~~~  264 (272)
                      +|++|++++| +++.+|+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            3677777777 676776653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.96  E-value=0.1  Score=26.74  Aligned_cols=17  Identities=35%  Similarity=0.800  Sum_probs=13.2

Q ss_pred             CCCcCEEeecCCCCCcc
Q 045653          243 WPTLQSLEATGCDNLKI  259 (272)
Q Consensus       243 ~~~L~~L~i~~c~~l~~  259 (272)
                      |+.|++|++++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            56788888888888764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.31  E-value=0.15  Score=43.16  Aligned_cols=70  Identities=14%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      ..||++..+.+..|.++......   .+..+|.+--|.+.. ..+.+...-..+..+++|..|.+...+-...+
T Consensus       196 r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  196 RIFPNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhcccchheeeecCcccchhhcc---cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            46788888888888666643333   222344444444433 33334433356678888888888876644433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.21  E-value=0.12  Score=43.68  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=40.1

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      .+.++|+|+.|+|+.+.+.+.. +..|   -...+|+.|.+.+ ..+.---....+..+|.+++|+++..
T Consensus        92 ile~lP~l~~LNls~N~L~s~I-~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   92 ILEQLPALTTLNLSCNSLSSDI-KSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             HHhcCccceEeeccCCcCCCcc-ccCc---ccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence            4568899999999988555421 1122   1367888888876 22211001234567888888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.89  E-value=0.091  Score=47.15  Aligned_cols=60  Identities=27%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +..+.+|+.|++.++.++.+...     +..+++|++|++++ +.++++   ..+..++.|+.|++.++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~-N~I~~i---~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSF-NKITKL---EGLSTLTLLKELNLSGN  150 (414)
T ss_pred             cccccceeeeeccccchhhcccc-----hhhhhcchheeccc-cccccc---cchhhccchhhheeccC
Confidence            34566677777776655553221     22467777777766 555555   34556666777776664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.34  E-value=1.5  Score=31.76  Aligned_cols=89  Identities=13%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.+.+.+. +..+...    .+..+++++++.+.+  .+..+ +...+..+++|+.+.+..  ++..+.  ..
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~--~~~~i~--~~   98 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN--NLKSI-GDNAFSNCTNLKNIDIPS--NITEIG--SS   98 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEETT--T-BEEH--TT
T ss_pred             ccccccccccccccc-cccccee----eeecccccccccccc--ccccc-ccccccccccccccccCc--cccEEc--hh
Confidence            456778999988774 5554333    456777899999965  44455 545677788999998864  355554  22


Q ss_pred             ccccCCccCCCccCeeecccccccccccC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYP  236 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  236 (272)
                      ....      .+++.+.+..  .++.+..
T Consensus        99 ~f~~------~~l~~i~~~~--~~~~i~~  119 (129)
T PF13306_consen   99 SFSN------CNLKEINIPS--NITKIEE  119 (129)
T ss_dssp             TTTT-------T--EEE-TT--B-SS---
T ss_pred             hhcC------CCceEEEECC--CccEECC
Confidence            2111      3566666543  4444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=88.49  E-value=0.11  Score=47.65  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=48.5

Q ss_pred             ccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCC
Q 045653          134 LEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTP  213 (272)
Q Consensus       134 L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~  213 (272)
                      |+.|-+++++++.+..     ..+..+.|..|+.++|.. ..+ + ..+.++.+|+.|.+... .+..++.+..      
T Consensus       145 Lkvli~sNNkl~~lp~-----~ig~~~tl~~ld~s~nei-~sl-p-sql~~l~slr~l~vrRn-~l~~lp~El~------  209 (722)
T KOG0532|consen  145 LKVLIVSNNKLTSLPE-----EIGLLPTLAHLDVSKNEI-QSL-P-SQLGYLTSLRDLNVRRN-HLEDLPEELC------  209 (722)
T ss_pred             ceeEEEecCccccCCc-----ccccchhHHHhhhhhhhh-hhc-h-HHhhhHHHHHHHHHhhh-hhhhCCHHHh------
Confidence            4555555554444211     122355555555555332 233 2 23455555666555542 3444442221      


Q ss_pred             ccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                        . -.|..|+++ |.++..+|..+  .....|++|.+.+.
T Consensus       210 --~-LpLi~lDfS-cNkis~iPv~f--r~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  210 --S-LPLIRLDFS-CNKISYLPVDF--RKMRHLQVLQLENN  244 (722)
T ss_pred             --C-Cceeeeecc-cCceeecchhh--hhhhhheeeeeccC
Confidence              1 236666663 35666666655  55566666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.24  E-value=0.4  Score=39.57  Aligned_cols=67  Identities=21%  Similarity=0.325  Sum_probs=43.5

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCcccc-chHHHhccccCcEEEeecCCCc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF-SASMIRSVEQLQHLDICLCKGL  199 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l  199 (272)
                      .+|+|+.|++++++++.+  ..+. -+..+++|.+|.+.+|......- -...+.-+++|+.|+-.++..-
T Consensus        89 ~~P~l~~l~ls~Nki~~l--stl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDL--STLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             hCCceeEEeecCCccccc--cccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            459999999999865542  2222 23467788888888877654221 2234556788888887776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.35  E-value=0.073  Score=44.52  Aligned_cols=82  Identities=15%  Similarity=0.192  Sum_probs=58.3

Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCC
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM  238 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  238 (272)
                      +.+.++|..|+| ++.++   .....++.|+.|.++=. +|..+   .....+      ++|++|.+.. ..+.++....
T Consensus        18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL---~pl~rC------trLkElYLRk-N~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSL---APLQRC------TRLKELYLRK-NCIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccc---hhHHHH------HHHHHHHHHh-cccccHHHHH
Confidence            677889999996 56777   56788999999988742 34333   223333      8899998865 3566665544


Q ss_pred             ccccCCCcCEEeecCCC
Q 045653          239 HTSEWPTLQSLEATGCD  255 (272)
Q Consensus       239 ~~~~~~~L~~L~i~~c~  255 (272)
                      ...++|+|+.|++...|
T Consensus        83 YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHhcCchhhhHhhccCC
Confidence            44789999999987754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=82.99  E-value=0.23  Score=45.63  Aligned_cols=87  Identities=22%  Similarity=0.355  Sum_probs=50.6

Q ss_pred             ccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          123 TLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       123 ~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      .++......++|..|+.+.|++..+     |+.+.++.+|+.|.++. +.+.++ |++.. .|+ |-.|+++ |+++..+
T Consensus       157 ~lp~~ig~~~tl~~ld~s~nei~sl-----psql~~l~slr~l~vrR-n~l~~l-p~El~-~Lp-Li~lDfS-cNkis~i  226 (722)
T KOG0532|consen  157 SLPEEIGLLPTLAHLDVSKNEIQSL-----PSQLGYLTSLRDLNVRR-NHLEDL-PEELC-SLP-LIRLDFS-CNKISYL  226 (722)
T ss_pred             cCCcccccchhHHHhhhhhhhhhhc-----hHHhhhHHHHHHHHHhh-hhhhhC-CHHHh-CCc-eeeeecc-cCceeec
Confidence            5566666778888888888866552     22355677777777765 444455 44322 332 5566665 5566666


Q ss_pred             eccCCccccCCccCCCccCeeeccc
Q 045653          203 ISEDTAIQVTPCFVFPRVSTLRLID  227 (272)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~l~~  227 (272)
                      +.  ....      +..|+.|-+.+
T Consensus       227 Pv--~fr~------m~~Lq~l~Len  243 (722)
T KOG0532|consen  227 PV--DFRK------MRHLQVLQLEN  243 (722)
T ss_pred             ch--hhhh------hhhheeeeecc
Confidence            62  2222      25566666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=82.65  E-value=0.33  Score=41.84  Aligned_cols=126  Identities=16%  Similarity=0.103  Sum_probs=73.8

Q ss_pred             cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccc---cchHHHhccccCcEEEeecCCCccee
Q 045653          126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYL---FSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l---~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      ..+...|.|+.+.+..+.+..--...+-..+..+++|+.|++.+ +-++.-   .-...+..+++|++|++++|. +..-
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~  256 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENE  256 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cccc
Confidence            34566789999999888433210000111356789999999988 333322   112346678899999999994 3322


Q ss_pred             eccCCccccCCccCCCccCeeecccccccccccCCC---ccccCCCcCEEeecCCCC
Q 045653          203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM---HTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---~~~~~~~L~~L~i~~c~~  256 (272)
                      .........  ....|+|+.|.+.++ .++.-....   ....-|.|++|++.+|.-
T Consensus       257 Ga~a~~~al--~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  257 GAIAFVDAL--KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cHHHHHHHH--hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            111111111  112599999999886 443322211   113478899999998853

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=81.95  E-value=0.11  Score=44.77  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=59.9

Q ss_pred             cccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCcc---ccchHHHhccccCcEEEeecCCCcc
Q 045653          124 LFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKY---LFSASMIRSVEQLQHLDICLCKGLL  200 (272)
Q Consensus       124 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~---l~~~~~~~~l~~L~~L~i~~c~~l~  200 (272)
                      +...+.++|+|+.|+|..+-++.--...+-..++.+++|+.|++.||.-=..   -+....-...|+|+.|.+.++. |+
T Consensus       205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It  283 (382)
T KOG1909|consen  205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-IT  283 (382)
T ss_pred             HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hH
Confidence            3456789999999999998222111111111244678999999999864221   0011223357999999999872 32


Q ss_pred             eeeccCCccccCCccCCCccCeeeccccc
Q 045653          201 GIISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      .-.   +..-...+...|.|+.|+++++.
T Consensus       284 ~da---~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  284 RDA---ALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHH---HHHHHHHHhcchhhHHhcCCccc
Confidence            211   10000112225999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 68/262 (25%)

Query: 29  DRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR 88
            +   D  +   T  +                 + +  +       +LP      REV  
Sbjct: 274 FKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLDCRPQDLP------REVLT 324

Query: 89  HS------ISSNTKD-----------SQDQSMTAITCSYEVNLEDKLD----TSTTLFND 127
            +      I+ + +D           + D+  T I  S    LE           ++F  
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSVFPP 383

Query: 128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF--SASMIRSV 185
              +P    L L       IW   +        S   +VV+  HK   +         S+
Sbjct: 384 SAHIP-TILLSL-------IWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 186 EQLQHLDICLCKGLLGIISEDTAI--QVTPCFVFPRVSTLRLIDLPKLR---FFYPGMHT 240
             + +L++   K     +  + A+   +   +  P+      +  P L    + + G H 
Sbjct: 429 PSI-YLEL-KVK-----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH- 480

Query: 241 SEWPTLQSLEATGCDNL--KIF 260
                L+++E      L   +F
Sbjct: 481 -----LKNIEHPERMTLFRMVF 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.43
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.42
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.39
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.38
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.34
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.26
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.25
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.06
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.04
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.01
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.99
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.96
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.95
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.94
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.9
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.75
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.68
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.35
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.82
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	94.16
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	87.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	81.67

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.71  E-value=5.2e-16  Score=133.25  Aligned_cols=213  Identities=20%  Similarity=0.273  Sum_probs=155.6

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .++++++|++.++ +++.+   +...+.+++|++|+++++. +...+. ..+    .+++|+.|+++++ .++.+|....
T Consensus        79 ~~~~l~~L~L~~n-~l~~l---p~~l~~l~~L~~L~L~~n~-l~~lp~-~~~----~l~~L~~L~Ls~n-~l~~lp~~l~  147 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQF---PDQAFRLSHLQHMTIDAAG-LMELPD-TMQ----QFAGLETLTLARN-PLRALPASIA  147 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSC---CSCGGGGTTCSEEEEESSC-CCCCCS-CGG----GGTTCSEEEEESC-CCCCCCGGGG
T ss_pred             cccceeEEEccCC-Cchhc---ChhhhhCCCCCEEECCCCC-ccchhH-HHh----ccCCCCEEECCCC-ccccCcHHHh
Confidence            3578999999984 45555   4456668999999999884 333322 111    5899999999986 4555554321


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccc---------cCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND---------KVRLPKLEALELHEINVEKIWRSQVPAKFPR  158 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~---------~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~  158 (272)
                                    .++.|+ .+++..|....   .++..         +..+++|+.|++.+|++..+     |..+..
T Consensus       148 --------------~l~~L~-~L~L~~n~~~~---~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-----p~~l~~  204 (328)
T 4fcg_A          148 --------------SLNRLR-ELSIRACPELT---ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-----PASIAN  204 (328)
T ss_dssp             --------------GCTTCC-EEEEEEETTCC---CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-----CGGGGG
T ss_pred             --------------cCcCCC-EEECCCCCCcc---ccChhHhhccchhhhccCCCCCEEECcCCCcCcc-----hHhhcC
Confidence                          144555 77788776655   33333         33489999999999977752     234567


Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCC
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM  238 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  238 (272)
                      +++|++|++.++. +..+ +. .+..+++|+.|++++|.....++  .      ....+++|+.|++++|..+..++...
T Consensus       205 l~~L~~L~L~~N~-l~~l-~~-~l~~l~~L~~L~Ls~n~~~~~~p--~------~~~~l~~L~~L~L~~n~~~~~~p~~~  273 (328)
T 4fcg_A          205 LQNLKSLKIRNSP-LSAL-GP-AIHHLPKLEELDLRGCTALRNYP--P------IFGGRAPLKRLILKDCSNLLTLPLDI  273 (328)
T ss_dssp             CTTCCEEEEESSC-CCCC-CG-GGGGCTTCCEEECTTCTTCCBCC--C------CTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred             CCCCCEEEccCCC-CCcC-ch-hhccCCCCCEEECcCCcchhhhH--H------HhcCCCCCCEEECCCCCchhhcchhh
Confidence            8999999999854 5555 43 47889999999999987665554  2      23346999999999998888888876


Q ss_pred             ccccCCCcCEEeecCCCCCcccccccccc
Q 045653          239 HTSEWPTLQSLEATGCDNLKIFGSELSSF  267 (272)
Q Consensus       239 ~~~~~~~L~~L~i~~c~~l~~l~~~~~~~  267 (272)
                        ..+++|++|++++|+.+..+|..+...
T Consensus       274 --~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          274 --HRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             --GGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             --hcCCCCCEEeCCCCCchhhccHHHhhc
Confidence              789999999999999999998876654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.60  E-value=8.5e-15  Score=125.64  Aligned_cols=209  Identities=15%  Similarity=0.214  Sum_probs=152.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++. ++.+   +...+.+++|++|+++++. +...+.. .+    .+++|+.|++++|..+..+|....
T Consensus       102 ~l~~L~~L~L~~n~-l~~l---p~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~----~l~~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A          102 RLSHLQHMTIDAAG-LMEL---PDTMQQFAGLETLTLARNP-LRALPAS-IA----SLNRLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             GGTTCSEEEEESSC-CCCC---CSCGGGGTTCSEEEEESCC-CCCCCGG-GG----GCTTCCEEEEEEETTCCCCCSCSE
T ss_pred             hCCCCCEEECCCCC-ccch---hHHHhccCCCCEEECCCCc-cccCcHH-Hh----cCcCCCEEECCCCCCccccChhHh
Confidence            36799999999853 4444   4556779999999999983 4433221 11    689999999999988887776432


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                      ...+.     .....++.|+ .+++..+.- .   .++..+..+++|+.|++.+|++..+.     ..+..+++|++|++
T Consensus       172 ~~~~~-----~~~~~l~~L~-~L~L~~n~l-~---~lp~~l~~l~~L~~L~L~~N~l~~l~-----~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          172 STDAS-----GEHQGLVNLQ-SLRLEWTGI-R---SLPASIANLQNLKSLKIRNSPLSALG-----PAIHHLPKLEELDL  236 (328)
T ss_dssp             EEC-C-----CCEEESTTCC-EEEEEEECC-C---CCCGGGGGCTTCCEEEEESSCCCCCC-----GGGGGCTTCCEEEC
T ss_pred             hccch-----hhhccCCCCC-EEECcCCCc-C---cchHhhcCCCCCCEEEccCCCCCcCc-----hhhccCCCCCEEEC
Confidence            21000     0011244555 777776632 2   45666788999999999999777532     23557899999999


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcC
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQ  247 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  247 (272)
                      .+|.....+ + ..+..+++|+.|++.+|.....++  ..      +..+++|+.|++++|..++.+|...  ..+++|+
T Consensus       237 s~n~~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~~p--~~------~~~l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~  304 (328)
T 4fcg_A          237 RGCTALRNY-P-PIFGGRAPLKRLILKDCSNLLTLP--LD------IHRLTQLEKLDLRGCVNLSRLPSLI--AQLPANC  304 (328)
T ss_dssp             TTCTTCCBC-C-CCTTCCCCCCEEECTTCTTCCBCC--TT------GGGCTTCCEEECTTCTTCCCCCGGG--GGSCTTC
T ss_pred             cCCcchhhh-H-HHhcCCCCCCEEECCCCCchhhcc--hh------hhcCCCCCEEeCCCCCchhhccHHH--hhccCce
Confidence            998887765 4 357889999999999998766655  22      3345999999999999999999877  7899999


Q ss_pred             EEeecC
Q 045653          248 SLEATG  253 (272)
Q Consensus       248 ~L~i~~  253 (272)
                      .+.+..
T Consensus       305 ~l~l~~  310 (328)
T 4fcg_A          305 IILVPP  310 (328)
T ss_dssp             EEECCG
T ss_pred             EEeCCH
Confidence            998763

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=1.1e-13  Score=116.14  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=144.4

Q ss_pred             CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .+|....++|++|++++. +++.+.  +.....+++|++|++.++ .+.........    .+++|+.|+++++..+..+
T Consensus        25 ~ip~~~~~~l~~L~l~~n-~i~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~   96 (285)
T 1ozn_A           25 AVPVGIPAASQRIFLHGN-RISHVP--AASFRACRNLTILWLHSN-VLARIDAAAFT----GLALLEQLDLSDNAQLRSV   96 (285)
T ss_dssp             SCCTTCCTTCSEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSCTTCCCC
T ss_pred             cCCcCCCCCceEEEeeCC-cCCccC--HHHcccCCCCCEEECCCC-ccceeCHhhcC----CccCCCEEeCCCCCCcccc
Confidence            345556678999999884 455551  133567899999999988 45554333322    5899999999988767766


Q ss_pred             ccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653           83 CREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL  162 (272)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L  162 (272)
                      ++.....             ++.|+ .+++..+.-..   ..+..+..+++|+.|++.++++..+.+.    .+..+++|
T Consensus        97 ~~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L  155 (285)
T 1ozn_A           97 DPATFHG-------------LGRLH-TLHLDRCGLQE---LGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNL  155 (285)
T ss_dssp             CTTTTTT-------------CTTCC-EEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTC
T ss_pred             CHHHhcC-------------CcCCC-EEECCCCcCCE---ECHhHhhCCcCCCEEECCCCcccccCHh----HhccCCCc
Confidence            4432221             34455 66666554322   2234467789999999999977764332    35578999


Q ss_pred             CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcccc
Q 045653          163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSE  242 (272)
Q Consensus       163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  242 (272)
                      ++|++.++ .++.+ +...+..+++|+.|++.++. +..+.. .      ....+++|+.|+++++ .++.++... ...
T Consensus       156 ~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~  223 (285)
T 1ozn_A          156 THLFLHGN-RISSV-PERAFRGLHSLDRLLLHQNR-VAHVHP-H------AFRDLGRLMTLYLFAN-NLSALPTEA-LAP  223 (285)
T ss_dssp             CEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSSC-CCEECT-T------TTTTCTTCCEEECCSS-CCSCCCHHH-HTT
T ss_pred             cEEECCCC-ccccc-CHHHhcCccccCEEECCCCc-ccccCH-h------HccCcccccEeeCCCC-cCCcCCHHH-ccc
Confidence            99999985 56666 55567789999999999874 555532 1      1233589999999886 666655431 157


Q ss_pred             CCCcCEEeecCCCC
Q 045653          243 WPTLQSLEATGCDN  256 (272)
Q Consensus       243 ~~~L~~L~i~~c~~  256 (272)
                      +++|++|++++++-
T Consensus       224 l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          224 LRALQYLRLNDNPW  237 (285)
T ss_dssp             CTTCCEEECCSSCE
T ss_pred             CcccCEEeccCCCc
Confidence            89999999988753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.55  E-value=2.6e-13  Score=110.89  Aligned_cols=117  Identities=12%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcC---EEEEecCcCCccccchHHHhccccCc-EEEeecCCCcceeec
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT---RLVVSNCHKLKYLFSASMIRSVEQLQ-HLDICLCKGLLGIIS  204 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~---~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~~~  204 (272)
                      ..+++|+.|++.+|++..+     |. +..+++|+   +|++.+++.+..+ +...+.++++|+ .|+++++ .++.++.
T Consensus       102 ~~l~~L~~L~l~~n~l~~l-----p~-~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n-~l~~i~~  173 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKMF-----PD-LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNN-GFTSVQG  173 (239)
T ss_dssp             ECCTTCCEEEEEEECCCSC-----CC-CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSC-CCCEECT
T ss_pred             CCCCCCCEEeCCCCCCccc-----cc-cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCC-CCcccCH
Confidence            4456666666666654431     11 23444454   6666665455555 434455666666 6666654 3444431


Q ss_pred             cCCccccCCccCCCccCeeecccccccccccCCCccccC-CCcCEEeecCCCCCcccccc
Q 045653          205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW-PTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~~l~~l~~~  263 (272)
                        ....      .++|+.|++++++.++.++.... ..+ ++|++|+++++ +++.+|..
T Consensus       174 --~~~~------~~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N-~l~~l~~~  223 (239)
T 2xwt_C          174 --YAFN------GTKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQT-SVTALPSK  223 (239)
T ss_dssp             --TTTT------TCEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTC-CCCCCCCT
T ss_pred             --hhcC------CCCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCC-ccccCChh
Confidence              1111      14566666666544555544321 344 56666666653 45555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.54  E-value=7.7e-13  Score=118.84  Aligned_cols=192  Identities=17%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....+++++|++++. +++.+.  +.....+++|++|++.++ .+.........    .+++|+.|+++++ +++.++
T Consensus        26 ip~~~~~~l~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~   96 (477)
T 2id5_A           26 VPEGIPTETRLLDLGKN-RIKTLN--QDEFASFPHLEELELNEN-IVSAVEPGAFN----NLFNLRTLGLRSN-RLKLIP   96 (477)
T ss_dssp             CCSCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCCSCC
T ss_pred             CCCCCCCCCcEEECCCC-ccceEC--HhHccCCCCCCEEECCCC-ccCEeChhhhh----CCccCCEEECCCC-cCCccC
Confidence            45555678999999984 455551  234567899999999998 55554433332    5899999999875 466665


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ......             ++.|+ .+++..+.-..   ..+..+..+++|+.|++.++++..+.+.    .+..+++|+
T Consensus        97 ~~~~~~-------------l~~L~-~L~Ls~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~  155 (477)
T 2id5_A           97 LGVFTG-------------LSNLT-KLDISENKIVI---LLDYMFQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLE  155 (477)
T ss_dssp             TTSSTT-------------CTTCC-EEECTTSCCCE---ECTTTTTTCTTCCEEEECCTTCCEECTT----SSTTCTTCC
T ss_pred             cccccC-------------CCCCC-EEECCCCcccc---CChhHccccccCCEEECCCCccceeChh----hccCCCCCC
Confidence            432221             34444 55565543221   2234456788888888888877765443    355788888


Q ss_pred             EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      +|++.++ .++.+ +...+..+++|+.|++.++ .+..+...       ....+++|+.|+++++..+..++
T Consensus       156 ~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~i~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~  217 (477)
T 2id5_A          156 QLTLEKC-NLTSI-PTEALSHLHGLIVLRLRHL-NINAIRDY-------SFKRLYRLKVLEISHWPYLDTMT  217 (477)
T ss_dssp             EEEEESC-CCSSC-CHHHHTTCTTCCEEEEESC-CCCEECTT-------CSCSCTTCCEEEEECCTTCCEEC
T ss_pred             EEECCCC-cCccc-ChhHhcccCCCcEEeCCCC-cCcEeChh-------hcccCcccceeeCCCCccccccC
Confidence            8888875 45565 5566778888888888876 34444321       11223555555555544444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.49  E-value=1.9e-12  Score=115.29  Aligned_cols=221  Identities=15%  Similarity=0.127  Sum_probs=113.4

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....++++.|+|++. +++.+.  +.....+++|++|+++++. +.........    .+++|+.|+++++ +++.++
T Consensus        58 iP~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~  128 (440)
T 3zyj_A           58 VPDGISTNTRLLNLHEN-QIQIIK--VNSFKHLRHLEILQLSRNH-IRTIEIGAFN----GLANLNTLELFDN-RLTTIP  128 (440)
T ss_dssp             CCSCCCTTCSEEECCSC-CCCEEC--TTTTSSCSSCCEEECCSSC-CCEECGGGGT----TCSSCCEEECCSS-CCSSCC
T ss_pred             CCCCCCCCCcEEEccCC-cCCeeC--HHHhhCCCCCCEEECCCCc-CCccChhhcc----CCccCCEEECCCC-cCCeeC
Confidence            45555677888888874 344441  2344567888888888873 4443322222    4678888888774 555554


Q ss_pred             cCcccc--ccc-cc-----cc---cccccccceeecceeeeccCCCCcccccc-cccCCCCCccEEEeccccceEeccCC
Q 045653           84 REVKRH--SIS-SN-----TK---DSQDQSMTAITCSYEVNLEDKLDTSTTLF-NDKVRLPKLEALELHEINVEKIWRSQ  151 (272)
Q Consensus        84 ~~~~~~--~~~-~~-----~~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~l~~i~~~~  151 (272)
                      ......  .+. +.     +.   ......++.|+ .+++..+..+.   .++ ..+..+++|+.|++.+|++..+    
T Consensus       129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~----  200 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-RLDLGELKRLS---YISEGAFEGLSNLRYLNLAMCNLREI----  200 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTTCSSCCEEECTTSCCSSC----
T ss_pred             HhHhhccccCceeeCCCCcccccCHHHhhhCcccC-EeCCCCCCCcc---eeCcchhhcccccCeecCCCCcCccc----
Confidence            422111  111 00     00   00011123333 44444433332   221 1244555666666666644432    


Q ss_pred             CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653          152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL  231 (272)
Q Consensus       152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  231 (272)
                       | .+..+++|++|++.++ .+..+ ++..+.++++|+.|++.++ .++.+..       .....+++|+.|+++++ ++
T Consensus       201 -~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l  267 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGN-HLSAI-RPGSFQGLMHLQKLWMIQS-QIQVIER-------NAFDNLQSLVEINLAHN-NL  267 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTC-CCCEECT-------TSSTTCTTCCEEECTTS-CC
T ss_pred             -c-ccCCCcccCEEECCCC-ccCcc-ChhhhccCccCCEEECCCC-ceeEECh-------hhhcCCCCCCEEECCCC-CC
Confidence             1 1335566666666653 44444 3344556666666666654 3444431       11223477777777765 56


Q ss_pred             ccccCCCccccCCCcCEEeecCCC
Q 045653          232 RFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +.++.... ..+++|+.|++.+++
T Consensus       268 ~~~~~~~~-~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          268 TLLPHDLF-TPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCCTTTT-SSCTTCCEEECCSSC
T ss_pred             CccChhHh-ccccCCCEEEcCCCC
Confidence            66555432 356777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=2.2e-12  Score=115.24  Aligned_cols=221  Identities=15%  Similarity=0.091  Sum_probs=118.9

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....+++++|+|++. +++.+.  +.....+++|++|+++++ .+.........    .+++|+.|+++++ +++.++
T Consensus        69 iP~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~  139 (452)
T 3zyi_A           69 VPQGIPSNTRYLNLMEN-NIQMIQ--ADTFRHLHHLEVLQLGRN-SIRQIEVGAFN----GLASLNTLELFDN-WLTVIP  139 (452)
T ss_dssp             CCSCCCTTCSEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSS-CCSBCC
T ss_pred             cCCCCCCCccEEECcCC-cCceEC--HHHcCCCCCCCEEECCCC-ccCCcChhhcc----CcccCCEEECCCC-cCCccC
Confidence            34444567888888874 344441  234456788888888877 44444332222    4677777777764 355544


Q ss_pred             cCcccc--ccc-ccc-----c---cccccccceeecceeeeccCCCCccccccc-ccCCCCCccEEEeccccceEeccCC
Q 045653           84 REVKRH--SIS-SNT-----K---DSQDQSMTAITCSYEVNLEDKLDTSTTLFN-DKVRLPKLEALELHEINVEKIWRSQ  151 (272)
Q Consensus        84 ~~~~~~--~~~-~~~-----~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~  151 (272)
                      ......  .+. +.+     .   ......++.|+ .+++..+..+.   .++. .+..+++|+.|++++|++..+    
T Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~----  211 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM-RLDLGELKKLE---YISEGAFEGLFNLKYLNLGMCNIKDM----  211 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC-EEECCCCTTCC---EECTTTTTTCTTCCEEECTTSCCSSC----
T ss_pred             hhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc-EEeCCCCCCcc---ccChhhccCCCCCCEEECCCCccccc----
Confidence            332111  111 000     0   00011233444 44555444433   2221 245566677777766655542    


Q ss_pred             CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653          152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL  231 (272)
Q Consensus       152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  231 (272)
                       | .+..+++|++|++.++ .+..+ ++..+.++++|+.|++.++ .+..+...       ....+++|+.|+++++ ++
T Consensus       212 -~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l  278 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGN-HFPEI-RPGSFHGLSSLKKLWVMNS-QVSLIERN-------AFDGLASLVELNLAHN-NL  278 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTS-CCSEE-CGGGGTTCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CC
T ss_pred             -c-cccccccccEEECcCC-cCccc-CcccccCccCCCEEEeCCC-cCceECHH-------HhcCCCCCCEEECCCC-cC
Confidence             1 2345677777777763 34444 3445667777777777765 34444311       1233477888888775 66


Q ss_pred             ccccCCCccccCCCcCEEeecCCC
Q 045653          232 RFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +.++.... ..+++|+.|++.+++
T Consensus       279 ~~~~~~~~-~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          279 SSLPHDLF-TPLRYLVELHLHHNP  301 (452)
T ss_dssp             SCCCTTSS-TTCTTCCEEECCSSC
T ss_pred             CccChHHh-ccccCCCEEEccCCC
Confidence            66655432 467778888877765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=9.7e-13  Score=115.21  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=15.8

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                      +++|+.|+++++ .++.++...  ..+++|++|+++++
T Consensus       294 l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          294 IPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHN  328 (390)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSS
T ss_pred             CCCCCEEECCCC-cceecCccc--cccCcCCEEECCCC
Confidence            355555555554 344443332  33444555544444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=1.9e-12  Score=115.31  Aligned_cols=182  Identities=15%  Similarity=0.202  Sum_probs=114.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecC------------
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGN------------   75 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~------------   75 (272)
                      .+++|++|+|+++ .++.+.  +.....+++|++|+++++ ++...+.....    .+++|+.|++++            
T Consensus        86 ~l~~L~~L~Ls~n-~i~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~L~~N~i~~~~~~~~~  157 (440)
T 3zyj_A           86 HLRHLEILQLSRN-HIRTIE--IGAFNGLANLNTLELFDN-RLTTIPNGAFV----YLSKLKELWLRNNPIESIPSYAFN  157 (440)
T ss_dssp             SCSSCCEEECCSS-CCCEEC--GGGGTTCSSCCEEECCSS-CCSSCCTTTSC----SCSSCCEEECCSCCCCEECTTTTT
T ss_pred             CCCCCCEEECCCC-cCCccC--hhhccCCccCCEEECCCC-cCCeeCHhHhh----ccccCceeeCCCCcccccCHHHhh
Confidence            4577888888774 344441  123445677777777776 33333222111    345555555554            


Q ss_pred             ------------CCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653           76 ------------LPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN  143 (272)
Q Consensus        76 ------------c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  143 (272)
                                  +..+..++...             ...++.|+ .+++..+.-.    .++ .+..+++|+.|++++|+
T Consensus       158 ~l~~L~~L~l~~~~~l~~i~~~~-------------~~~l~~L~-~L~L~~n~l~----~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          158 RIPSLRRLDLGELKRLSYISEGA-------------FEGLSNLR-YLNLAMCNLR----EIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTT-------------TTTCSSCC-EEECTTSCCS----SCC-CCTTCSSCCEEECTTSC
T ss_pred             hCcccCEeCCCCCCCcceeCcch-------------hhcccccC-eecCCCCcCc----ccc-ccCCCcccCEEECCCCc
Confidence                        43333333221             12244555 6666655322    233 35788999999999998


Q ss_pred             ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCee
Q 045653          144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTL  223 (272)
Q Consensus       144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  223 (272)
                      +..+.+.    .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.++..       ....+++|+.|
T Consensus       219 l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L  284 (440)
T 3zyj_A          219 LSAIRPG----SFQGLMHLQKLWMIQS-QIQVI-ERNAFDNLQSLVEINLAHN-NLTLLPHD-------LFTPLHHLERI  284 (440)
T ss_dssp             CCEECTT----TTTTCTTCCEEECTTC-CCCEE-CTTSSTTCTTCCEEECTTS-CCCCCCTT-------TTSSCTTCCEE
T ss_pred             cCccChh----hhccCccCCEEECCCC-ceeEE-ChhhhcCCCCCCEEECCCC-CCCccChh-------HhccccCCCEE
Confidence            8876554    4668999999999984 56666 5567788999999999997 56655521       12335899999


Q ss_pred             ecccccc
Q 045653          224 RLIDLPK  230 (272)
Q Consensus       224 ~l~~c~~  230 (272)
                      ++++.+-
T Consensus       285 ~L~~Np~  291 (440)
T 3zyj_A          285 HLHHNPW  291 (440)
T ss_dssp             ECCSSCE
T ss_pred             EcCCCCc
Confidence            9988653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.46  E-value=3.5e-12  Score=106.40  Aligned_cols=208  Identities=19%  Similarity=0.206  Sum_probs=133.3

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....++|++|+++++ +++.+.  +.....+++|++|+++++ .+.........    .+++|+.|+++++ .++.++
T Consensus        22 ip~~l~~~l~~L~ls~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~   92 (276)
T 2z62_A           22 IPDNLPFSTKNLDLSFN-PLRHLG--SYSFFSFPELQVLDLSRC-EIQTIEDGAYQ----SLSHLSTLILTGN-PIQSLA   92 (276)
T ss_dssp             CCSSSCTTCCEEECTTC-CCCEEC--TTTTTTCTTCSEEECTTC-CCCEECTTTTT----TCTTCCEEECTTC-CCCEEC
T ss_pred             cCCCCCCCccEEECCCC-cccccC--HhHhccccCCcEEECCCC-cCCccCHHHcc----CCcCCCEEECCCC-ccCccC
Confidence            34444467999999885 455551  124556899999999998 55554433222    5799999999875 444444


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ......             ++.|+ .+.+..+.-..   .....+..+++|+.|++.++++..+   .+|..+..+++|+
T Consensus        93 ~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~---~l~~~~~~l~~L~  152 (276)
T 2z62_A           93 LGAFSG-------------LSSLQ-KLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLE  152 (276)
T ss_dssp             TTTTTT-------------CTTCC-EEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCC
T ss_pred             hhhhcC-------------Ccccc-EEECCCCCccc---cCchhcccCCCCCEEECcCCcccee---cCchhhccCCCCC
Confidence            322111             33444 55555443221   1122357789999999999866652   1233456789999


Q ss_pred             EEEEecCcCCccccchHHHhccccCc----EEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQLQ----HLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH  239 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L~----~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  239 (272)
                      +|++.++ .++.+ +...+..+++|+    +|+++++ .+..++.  ....      ..+|+.|+++++ .++.++....
T Consensus       153 ~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~--~~~~------~~~L~~L~L~~n-~l~~~~~~~~  220 (276)
T 2z62_A          153 HLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP--GAFK------EIRLKELALDTN-QLKSVPDGIF  220 (276)
T ss_dssp             EEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECT--TSSC------SCCEEEEECCSS-CCSCCCTTTT
T ss_pred             EEECCCC-CCCcC-CHHHhhhhhhccccceeeecCCC-cccccCc--cccC------CCcccEEECCCC-ceeecCHhHh
Confidence            9999885 45555 444556666666    7888875 4665542  2212      258999999987 5887776432


Q ss_pred             cccCCCcCEEeecC
Q 045653          240 TSEWPTLQSLEATG  253 (272)
Q Consensus       240 ~~~~~~L~~L~i~~  253 (272)
                       ..+++|++|++++
T Consensus       221 -~~l~~L~~L~l~~  233 (276)
T 2z62_A          221 -DRLTSLQKIWLHT  233 (276)
T ss_dssp             -TTCCSCCEEECCS
T ss_pred             -cccccccEEEccC
Confidence             5789999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.46  E-value=2e-12  Score=105.60  Aligned_cols=205  Identities=13%  Similarity=0.069  Sum_probs=145.3

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      ..++|++|++++. +++.+..  .....+++|++|++.++..+...+.....    .+++|+.|++++|.+++.++....
T Consensus        29 ~~~~l~~L~l~~n-~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~~~f~----~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           29 LPPSTQTLKLIET-HLRTIPS--HAFSNLPNISRIYVSIDVTLQQLESHSFY----NLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             CCTTCCEEEEESC-CCSEECT--TTTTTCTTCCEEEEECCSSCCEECTTTEE----SCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CCCcccEEEEeCC-cceEECH--HHccCCCCCcEEeCCCCCCcceeCHhHcC----CCcCCcEEECCCCCCeeEcCHHHh
Confidence            3357999999984 4555521  24556899999999999767666543333    589999999998888888775432


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCcc---EEEeccc-cceEeccCCCCCCCCCCCCcC
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLE---ALELHEI-NVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~---~L~L~~~-~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ..             .+.|+ .+++..+.-.    .++. +..+++|+   .|++.++ ++..+.+.    .+..+++|+
T Consensus       102 ~~-------------l~~L~-~L~l~~n~l~----~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~  158 (239)
T 2xwt_C          102 KE-------------LPLLK-FLGIFNTGLK----MFPD-LTKVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNET  158 (239)
T ss_dssp             EC-------------CTTCC-EEEEEEECCC----SCCC-CTTCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSE
T ss_pred             CC-------------CCCCC-EEeCCCCCCc----cccc-cccccccccccEEECCCCcchhhcCcc----cccchhcce
Confidence            22             34555 7777765432    2333 56677777   9999999 88886544    356799999


Q ss_pred             -EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCC-CccCeeecccccccccccCCCccc
Q 045653          164 -RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVF-PRVSTLRLIDLPKLRFFYPGMHTS  241 (272)
Q Consensus       164 -~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~  241 (272)
                       +|++.++ .++.+ +...+.. ++|++|++.++..++.++...       ...+ ++|+.|++++. .++.++..    
T Consensus       159 ~~L~l~~n-~l~~i-~~~~~~~-~~L~~L~L~~n~~l~~i~~~~-------~~~l~~~L~~L~l~~N-~l~~l~~~----  223 (239)
T 2xwt_C          159 LTLKLYNN-GFTSV-QGYAFNG-TKLDAVYLNKNKYLTVIDKDA-------FGGVYSGPSLLDVSQT-SVTALPSK----  223 (239)
T ss_dssp             EEEECCSC-CCCEE-CTTTTTT-CEEEEEECTTCTTCCEECTTT-------TTTCSBCCSEEECTTC-CCCCCCCT----
T ss_pred             eEEEcCCC-CCccc-CHhhcCC-CCCCEEEcCCCCCcccCCHHH-------hhccccCCcEEECCCC-ccccCChh----
Confidence             9999884 56666 5544455 899999999986687775221       2335 89999999984 77777653    


Q ss_pred             cCCCcCEEeecCCCCC
Q 045653          242 EWPTLQSLEATGCDNL  257 (272)
Q Consensus       242 ~~~~L~~L~i~~c~~l  257 (272)
                      .+++|+.|.+.++.++
T Consensus       224 ~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          224 GLEHLKELIARNTWTL  239 (239)
T ss_dssp             TCTTCSEEECTTC---
T ss_pred             HhccCceeeccCccCC
Confidence            5889999999988754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.45  E-value=2.6e-12  Score=118.68  Aligned_cols=224  Identities=15%  Similarity=0.163  Sum_probs=110.1

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      +++|++|+++++ .++.+   +.....+++|++|++.++. +.........    .+++|+.|+++++.....++.+...
T Consensus       277 l~~L~~L~l~~n-~l~~l---p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          277 FSGLQELDLTAT-HLSEL---PSGLVGLSTLKKLVLSANK-FENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             CTTCSEEECTTS-CCSCC---CSSCCSCTTCCEEECTTCC-CSBGGGGCGG----GCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             ccCCCEEeccCC-ccCCC---ChhhcccccCCEEECccCC-cCcCchhhhh----ccCcCCEEECCCCCcccccchhhhh
Confidence            456677777664 34433   3334456677777777663 2222111111    4667777777665433233322111


Q ss_pred             c--ccc-c-----cccc-----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCC
Q 045653           89 H--SIS-S-----NTKD-----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAK  155 (272)
Q Consensus        89 ~--~~~-~-----~~~~-----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~  155 (272)
                      .  .+. +     .+..     .....++.|+ .+++..+.-..   ..+..+..+++|+.|++.+|++....+.   ..
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~  420 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQ-SLNLSYNEPLS---LKTEAFKECPQLELLDLAFTRLKVKDAQ---SP  420 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCC-EEECCSCSCEE---ECTTTTTTCTTCSEEECTTCCEECCTTC---CT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCC-EEECCCCcCCc---CCHHHhcCCccCCeEECCCCcCCCcccc---hh
Confidence            0  000 0     0000     0011122333 33333332111   1223344556666666666644432111   12


Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcce-eeccCCccccCCccCCCccCeeecccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLG-IISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF  234 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  234 (272)
                      +..+++|++|++.++. +... ++..+..+++|++|+++++. +.. ....     ......+++|+.|+++++ +++.+
T Consensus       421 ~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-----~~~~~~l~~L~~L~Ls~n-~l~~~  491 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSL-LDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQK-----TNSLQTLGRLEILVLSFC-DLSSI  491 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECS-----SCGGGGCTTCCEEECTTS-CCCEE
T ss_pred             hhCcccCCEEECCCCc-cCCc-CHHHHhCCCCCCEEECCCCC-CCcccccc-----chhhccCCCccEEECCCC-ccCcc
Confidence            4456777777776643 3333 23445667777777777763 322 1110     012344688999999887 55555


Q ss_pred             c-CCCccccCCCcCEEeecCCCCCccc
Q 045653          235 Y-PGMHTSEWPTLQSLEATGCDNLKIF  260 (272)
Q Consensus       235 ~-~~~~~~~~~~L~~L~i~~c~~l~~l  260 (272)
                      + ..+  ..+++|++|+++++. ++.+
T Consensus       492 ~~~~~--~~l~~L~~L~Ls~N~-l~~~  515 (606)
T 3t6q_A          492 DQHAF--TSLKMMNHVDLSHNR-LTSS  515 (606)
T ss_dssp             CTTTT--TTCTTCCEEECCSSC-CCGG
T ss_pred             Chhhh--ccccCCCEEECCCCc-cCcC
Confidence            4 334  578899999999884 5443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.45  E-value=1.2e-12  Score=120.96  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=22.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEI   50 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l   50 (272)
                      .+++|++|.+.++.- +.+   + .. .+++|++|++.++..+
T Consensus       305 ~~~~L~~L~l~~n~l-~~l---p-~~-~l~~L~~L~l~~n~~~  341 (606)
T 3vq2_A          305 KHFKWQSLSIIRCQL-KQF---P-TL-DLPFLKSLTLTMNKGS  341 (606)
T ss_dssp             TTCCCSEEEEESCCC-SSC---C-CC-CCSSCCEEEEESCSSC
T ss_pred             ccccCCEEEcccccC-ccc---c-cC-CCCccceeeccCCcCc
Confidence            345777777777654 444   1 22 5677777777766443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.44  E-value=3.9e-12  Score=113.61  Aligned_cols=182  Identities=17%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEec-------------
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLG-------------   74 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~-------------   74 (272)
                      .+++|++|+|+++ +++.+.  +.....+++|++|+++++. +...+.....    .+++|+.|+++             
T Consensus        97 ~l~~L~~L~Ls~n-~i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~  168 (452)
T 3zyi_A           97 HLHHLEVLQLGRN-SIRQIE--VGAFNGLASLNTLELFDNW-LTVIPSGAFE----YLSKLRELWLRNNPIESIPSYAFN  168 (452)
T ss_dssp             TCTTCCEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSSC-CSBCCTTTSS----SCTTCCEEECCSCCCCEECTTTTT
T ss_pred             CCCCCCEEECCCC-ccCCcC--hhhccCcccCCEEECCCCc-CCccChhhhc----ccCCCCEEECCCCCcceeCHhHHh
Confidence            4567777777764 344441  1233456777777777662 3332222111    24455555554             


Q ss_pred             -----------CCCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653           75 -----------NLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN  143 (272)
Q Consensus        75 -----------~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  143 (272)
                                 +|..+..++....             ...+.|+ .+++..+.-.    .+ ..+..+++|+.|++++|+
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~~~~~-------------~~l~~L~-~L~L~~n~l~----~~-~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYISEGAF-------------EGLFNLK-YLNLGMCNIK----DM-PNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTT-------------TTCTTCC-EEECTTSCCS----SC-CCCTTCTTCCEEECTTSC
T ss_pred             cCCcccEEeCCCCCCccccChhhc-------------cCCCCCC-EEECCCCccc----cc-ccccccccccEEECcCCc
Confidence                       4444444332211             1244555 6666655322    22 235788999999999998


Q ss_pred             ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCee
Q 045653          144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTL  223 (272)
Q Consensus       144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L  223 (272)
                      +..+.+.    .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.++..  .     ...+++|+.|
T Consensus       230 l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~--~-----~~~l~~L~~L  295 (452)
T 3zyi_A          230 FPEIRPG----SFHGLSSLKKLWVMNS-QVSLI-ERNAFDGLASLVELNLAHN-NLSSLPHD--L-----FTPLRYLVEL  295 (452)
T ss_dssp             CSEECGG----GGTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCSCCCTT--S-----STTCTTCCEE
T ss_pred             CcccCcc----cccCccCCCEEEeCCC-cCceE-CHHHhcCCCCCCEEECCCC-cCCccChH--H-----hccccCCCEE
Confidence            8876554    4668999999999984 55666 4466788999999999997 56655521  1     2335899999


Q ss_pred             ecccccc
Q 045653          224 RLIDLPK  230 (272)
Q Consensus       224 ~l~~c~~  230 (272)
                      ++.+.+-
T Consensus       296 ~L~~Np~  302 (452)
T 3zyi_A          296 HLHHNPW  302 (452)
T ss_dssp             ECCSSCE
T ss_pred             EccCCCc
Confidence            9988753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=1.3e-11  Score=110.93  Aligned_cols=224  Identities=15%  Similarity=0.142  Sum_probs=105.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+|+++ .++.+.  ......+++|++|+++++. +.........    .+++|+.|+++++ .+..+.....
T Consensus        78 ~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~  148 (477)
T 2id5_A           78 NLFNLRTLGLRSN-RLKLIP--LGVFTGLSNLTKLDISENK-IVILLDYMFQ----DLYNLKSLEVGDN-DLVYISHRAF  148 (477)
T ss_dssp             TCTTCCEEECCSS-CCCSCC--TTSSTTCTTCCEEECTTSC-CCEECTTTTT----TCTTCCEEEECCT-TCCEECTTSS
T ss_pred             CCccCCEEECCCC-cCCccC--cccccCCCCCCEEECCCCc-cccCChhHcc----ccccCCEEECCCC-ccceeChhhc
Confidence            4578999999874 355441  1223567889999998874 3333222222    4677777777764 3333322111


Q ss_pred             cc--ccc-ccc-----cc---ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc-cceEeccCCCCCC
Q 045653           88 RH--SIS-SNT-----KD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI-NVEKIWRSQVPAK  155 (272)
Q Consensus        88 ~~--~~~-~~~-----~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~  155 (272)
                      ..  .+. +.+     ..   ......+.|+ .+++..+.-..   .....+..+++|+.|++.+| .+..+...     
T Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----  219 (477)
T 2id5_A          149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-VLRLRHLNINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPN-----  219 (477)
T ss_dssp             TTCTTCCEEEEESCCCSSCCHHHHTTCTTCC-EEEEESCCCCE---ECTTCSCSCTTCCEEEEECCTTCCEECTT-----
T ss_pred             cCCCCCCEEECCCCcCcccChhHhcccCCCc-EEeCCCCcCcE---eChhhcccCcccceeeCCCCccccccCcc-----
Confidence            11  000 000     00   0001122222 33333322111   11122344555555555555 22222111     


Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      .....+|++|++.++ .++.+ +...+..+++|+.|+++++. +..+...       ....+++|+.|+++++ +++.+.
T Consensus       220 ~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~  288 (477)
T 2id5_A          220 CLYGLNLTSLSITHC-NLTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGG-QLAVVE  288 (477)
T ss_dssp             TTTTCCCSEEEEESS-CCCSC-CHHHHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSS-CCSEEC
T ss_pred             cccCccccEEECcCC-ccccc-CHHHhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCC-ccceEC
Confidence            112346666666664 34454 54556777777777777753 5444321       1222466666666654 444443


Q ss_pred             CCCccccCCCcCEEeecCCCCCccccc
Q 045653          236 PGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      .... ..+++|++|+++++ +++.++.
T Consensus       289 ~~~~-~~l~~L~~L~L~~N-~l~~~~~  313 (477)
T 2id5_A          289 PYAF-RGLNYLRVLNVSGN-QLTTLEE  313 (477)
T ss_dssp             TTTB-TTCTTCCEEECCSS-CCSCCCG
T ss_pred             HHHh-cCcccCCEEECCCC-cCceeCH
Confidence            2211 35566666666655 3444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.43  E-value=1.8e-12  Score=119.89  Aligned_cols=67  Identities=19%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~   84 (272)
                      +++|++|++.++. ++.+ . +...+.+++|+.|+++++. +...+....+    .+++|+.|+++++ .+..++.
T Consensus        74 l~~L~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~l~~  140 (597)
T 3oja_B           74 FRQVELLNLNDLQ-IEEI-D-TYAFAYAHTIQKLYMGFNA-IRYLPPHVFQ----NVPLLTVLVLERN-DLSSLPR  140 (597)
T ss_dssp             CCCCSEEECTTSC-CCEE-C-TTTTTTCTTCCEEECCSSC-CCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCCcEEECCCCC-CCCC-C-hHHhcCCCCCCEEECCCCc-CCCCCHHHHc----CCCCCCEEEeeCC-CCCCCCH
Confidence            4566666666532 3333 1 1233456666666666663 3333322212    3666777776664 4444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.42  E-value=6.8e-12  Score=104.41  Aligned_cols=202  Identities=15%  Similarity=0.131  Sum_probs=125.3

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      .++.+++++++ .+++.+   +.  ...++|++|+++++. +...+.....    .+++|+.|+++++ .++.++.....
T Consensus        15 ~~~~~~l~~~~-~~l~~i---p~--~~~~~l~~L~l~~n~-l~~~~~~~~~----~l~~L~~L~l~~n-~l~~i~~~~~~   82 (270)
T 2o6q_A           15 NNNKNSVDCSS-KKLTAI---PS--NIPADTKKLDLQSNK-LSSLPSKAFH----RLTKLRLLYLNDN-KLQTLPAGIFK   82 (270)
T ss_dssp             ETTTTEEECTT-SCCSSC---CS--CCCTTCSEEECCSSC-CSCCCTTSSS----SCTTCCEEECCSS-CCSCCCTTTTS
T ss_pred             CCCCCEEEccC-CCCCcc---CC--CCCCCCCEEECcCCC-CCeeCHHHhc----CCCCCCEEECCCC-ccCeeChhhhc
Confidence            34567777765 445544   11  123678888888773 4433322222    4788888888774 45554443211


Q ss_pred             cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS  168 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~  168 (272)
                      .             ++.|+ .+++..+.-..   .....+..+++|+.|++.++++..+.+.    .+..+++|++|++.
T Consensus        83 ~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A           83 E-------------LKNLE-TLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLG  141 (270)
T ss_dssp             S-------------CTTCC-EEECCSSCCCC---CCTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECC
T ss_pred             C-------------CCCCC-EEECCCCcCCc---CCHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECC
Confidence            1             33444 55555443221   1122346788999999998877764333    35578899999998


Q ss_pred             cCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCE
Q 045653          169 NCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQS  248 (272)
Q Consensus       169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  248 (272)
                      ++ .+..+ +...+..+++|++|++.++ .++.++..       ....+++|+.|+++++ .++.++.... ..+++|+.
T Consensus       142 ~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~  209 (270)
T 2o6q_A          142 YN-ELQSL-PKGVFDKLTSLKELRLYNN-QLKRVPEG-------AFDKLTELKTLKLDNN-QLKRVPEGAF-DSLEKLKM  209 (270)
T ss_dssp             SS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCE
T ss_pred             CC-cCCcc-CHhHccCCcccceeEecCC-cCcEeChh-------HhccCCCcCEEECCCC-cCCcCCHHHh-ccccCCCE
Confidence            85 56666 5555778899999999886 35554421       1233588999999886 7777766432 46888999


Q ss_pred             EeecCCC
Q 045653          249 LEATGCD  255 (272)
Q Consensus       249 L~i~~c~  255 (272)
                      |++.+++
T Consensus       210 L~l~~N~  216 (270)
T 2o6q_A          210 LQLQENP  216 (270)
T ss_dssp             EECCSSC
T ss_pred             EEecCCC
Confidence            9987765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.42  E-value=1.6e-12  Score=108.39  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=63.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|++..+.+.    .+..+++|++|++.++ .++.+ +...+..+++|+.|++++| .++.++.  .
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~--~  175 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYN-QLQSLPE--G  175 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T
T ss_pred             hcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCC-CcCccCH--H
Confidence            34567777777777765543222    2445677777777764 45555 4344566777777777766 3443331  1


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                           ....+++|+.|+++++ .++.++.... ..+++|++|++.++
T Consensus       176 -----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          176 -----VFDKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDN  215 (272)
T ss_dssp             -----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred             -----HhcCCccCCEEECCCC-cCCccCHHHH-hCCcCCCEEEccCC
Confidence                 1223467777777665 4555444321 45667777777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=1.9e-12  Score=119.60  Aligned_cols=218  Identities=17%  Similarity=0.130  Sum_probs=121.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      .+++|++|++.++..+...     ..+.+++|++|+++++. +.......   ... .+++|+.|+++++. +..++...
T Consensus       326 ~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~~~---~~~~~~~~L~~L~L~~n~-l~~~~~~~  395 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNA-LSFSGCCS---YSDLGTNSLRHLDLSFNG-AIIMSANF  395 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSC-EEEEEECC---HHHHCCSCCCEEECCSCS-EEEECCCC
T ss_pred             CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCc-cCCCcchh---hhhccCCcccEeECCCCc-cccchhhc
Confidence            6788999999887555433     33467888888888873 33221000   011 46777777777653 44333211


Q ss_pred             cc-cccc-ccc-----cc----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceE-eccCCCCC
Q 045653           87 KR-HSIS-SNT-----KD----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWRSQVPA  154 (272)
Q Consensus        87 ~~-~~~~-~~~-----~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~~~~~~  154 (272)
                      .. ..+. +.+     ..    .....++.|+ .+++..+.-..   ..+..+..+++|+.|++.+|++.. +.    |.
T Consensus       396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~  467 (606)
T 3vq2_A          396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL-YLDISYTNTKI---DFDGIFLGLTSLNTLKMAGNSFKDNTL----SN  467 (606)
T ss_dssp             TTCTTCCEEECTTSEEESTTTTTTTTTCTTCC-EEECTTSCCEE---CCTTTTTTCTTCCEEECTTCEEGGGEE----CS
T ss_pred             cCCCCCCeeECCCCccCCccChhhhhccccCC-EEECcCCCCCc---cchhhhcCCCCCCEEECCCCcCCCcch----HH
Confidence            10 0011 000     00    0111233444 45554443222   233445667777777777775443 12    22


Q ss_pred             CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653          155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF  234 (272)
Q Consensus       155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  234 (272)
                      .+..+++|++|++.+| .++.+ ++..+..+++|++|++++| .+..+.+ .      ....+++|+.|+++++ +++.+
T Consensus       468 ~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~------~~~~l~~L~~L~l~~N-~l~~~  536 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKC-QLEQI-SWGVFDTLHRLQLLNMSHN-NLLFLDS-S------HYNQLYSLSTLDCSFN-RIETS  536 (606)
T ss_dssp             CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCSCEEG-G------GTTTCTTCCEEECTTS-CCCCE
T ss_pred             hhccCCCCCEEECCCC-cCCcc-ChhhhcccccCCEEECCCC-cCCCcCH-H------HccCCCcCCEEECCCC-cCccc
Confidence            3556777888887775 44444 3345667778888888776 3544431 1      1233478888888876 57777


Q ss_pred             cCCCccccCC-CcCEEeecCCCC
Q 045653          235 YPGMHTSEWP-TLQSLEATGCDN  256 (272)
Q Consensus       235 ~~~~~~~~~~-~L~~L~i~~c~~  256 (272)
                      +...  ..++ +|++|++.+++-
T Consensus       537 p~~~--~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          537 KGIL--QHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             ESCG--GGSCTTCCEEECCSCCC
T ss_pred             CHhH--hhhcccCcEEEccCCCc
Confidence            7764  5666 488888877553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.40  E-value=9.3e-12  Score=104.27  Aligned_cols=203  Identities=13%  Similarity=0.113  Sum_probs=137.9

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS   92 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~   92 (272)
                      +++++++ .+++.+   +  .+..++|++|++.++ .+.........    .+++|+.|+++++ .++.+.+.....   
T Consensus        14 ~~~~c~~-~~l~~i---p--~~~~~~l~~L~l~~n-~i~~~~~~~~~----~~~~L~~L~l~~n-~l~~~~~~~~~~---   78 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAV---P--VGIPAASQRIFLHGN-RISHVPAASFR----ACRNLTILWLHSN-VLARIDAAAFTG---   78 (285)
T ss_dssp             CEEECCS-SCCSSC---C--TTCCTTCSEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCCEECTTTTTT---
T ss_pred             eEEEcCc-CCcccC---C--cCCCCCceEEEeeCC-cCCccCHHHcc----cCCCCCEEECCCC-ccceeCHhhcCC---
Confidence            3455544 344444   1  234579999999998 44554433222    5899999999986 555553322211   


Q ss_pred             cccccccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653           93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH  171 (272)
Q Consensus        93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~  171 (272)
                                ++.|+ .+++..+..+.   .+ +..+..+++|+.|++.++++..+.+.    .+..+++|++|++.++ 
T Consensus        79 ----------l~~L~-~L~l~~n~~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-  139 (285)
T 1ozn_A           79 ----------LALLE-QLDLSDNAQLR---SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDN-  139 (285)
T ss_dssp             ----------CTTCC-EEECCSCTTCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSS-
T ss_pred             ----------ccCCC-EEeCCCCCCcc---ccCHHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCC-
Confidence                      44555 77777665333   23 44567889999999999977764333    4667999999999985 


Q ss_pred             CCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc-cCCCccccCCCcCEEe
Q 045653          172 KLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF-YPGMHTSEWPTLQSLE  250 (272)
Q Consensus       172 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~  250 (272)
                      .+..+ +...+..+++|+.|+++++ .++.++..       ....+++|+.|+++++ .++.+ +..+  ..+++|++|+
T Consensus       140 ~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~  207 (285)
T 1ozn_A          140 ALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPER-------AFRGLHSLDRLLLHQN-RVAHVHPHAF--RDLGRLMTLY  207 (285)
T ss_dssp             CCCCC-CTTTTTTCTTCCEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEE
T ss_pred             ccccc-CHhHhccCCCccEEECCCC-cccccCHH-------HhcCccccCEEECCCC-cccccCHhHc--cCcccccEee
Confidence            45666 5556788999999999997 56666521       1233599999999997 56666 3444  6789999999


Q ss_pred             ecCCCCCccccc
Q 045653          251 ATGCDNLKIFGS  262 (272)
Q Consensus       251 i~~c~~l~~l~~  262 (272)
                      ++++ +++.++.
T Consensus       208 l~~n-~l~~~~~  218 (285)
T 1ozn_A          208 LFAN-NLSALPT  218 (285)
T ss_dssp             CCSS-CCSCCCH
T ss_pred             CCCC-cCCcCCH
Confidence            9987 5665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=6e-12  Score=108.74  Aligned_cols=233  Identities=15%  Similarity=0.138  Sum_probs=141.4

Q ss_pred             CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .+|...+++|++|+++++ +++.+ . ......+++|++|++.++ .+.........    .+++|+.|+++++ +++.+
T Consensus        45 ~iP~~~~~~L~~L~l~~n-~i~~~-~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~  115 (353)
T 2z80_A           45 SIPSGLTEAVKSLDLSNN-RITYI-S-NSDLQRCVNLQALVLTSN-GINTIEEDSFS----SLGSLEHLDLSYN-YLSNL  115 (353)
T ss_dssp             SCCTTCCTTCCEEECTTS-CCCEE-C-TTTTTTCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCSSC
T ss_pred             cccccccccCcEEECCCC-cCccc-C-HHHhccCCCCCEEECCCC-ccCccCHhhcC----CCCCCCEEECCCC-cCCcC
Confidence            345556678999999885 35555 1 124566889999999888 45544332222    4678888888764 44444


Q ss_pred             ccCccc--cccc-cc-----ccc----ccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEecc
Q 045653           83 CREVKR--HSIS-SN-----TKD----SQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWR  149 (272)
Q Consensus        83 ~~~~~~--~~~~-~~-----~~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~  149 (272)
                      +.....  ..++ +.     +..    ......+.|+ .+++..+....   .+ +..+..+++|+.|++.+|++..+.+
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~-~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ-ILRVGNMDTFT---KIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc-EEECCCCcccc---ccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            432110  1111 00     000    0122344555 66666664333   22 2345677888888888887766533


Q ss_pred             CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc-------------cc------
Q 045653          150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA-------------IQ------  210 (272)
Q Consensus       150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~-------------~~------  210 (272)
                      .    .+..+++|++|++.++. +..+ +......+++|+.|+++++. +..+......             ..      
T Consensus       192 ~----~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          192 K----SLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             T----TTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             H----HHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCc
Confidence            3    45678899999998855 5555 55556678999999999873 4433211100             00      


Q ss_pred             -----cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653          211 -----VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL  257 (272)
Q Consensus       211 -----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  257 (272)
                           ......+++|+.|+++++ +++.++.... ..+++|++|++++++-.
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~-~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred             chhhhHHHHhcccCCCEEECCCC-CCCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence                 001345689999999886 7777776532 57899999999988643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.40  E-value=1.7e-12  Score=110.46  Aligned_cols=62  Identities=13%  Similarity=0.068  Sum_probs=31.8

Q ss_pred             CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCC
Q 045653           10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNL   76 (272)
Q Consensus        10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c   76 (272)
                      .++++|++.++. +......+...+.+++|++|+++++..+........+    .+++|++|+++++
T Consensus        50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHT  111 (313)
T ss_dssp             CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEE
T ss_pred             ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCC
Confidence            467777777643 2220011344556677777777754444432221111    4566666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=2.7e-11  Score=103.62  Aligned_cols=224  Identities=17%  Similarity=0.190  Sum_probs=118.1

Q ss_pred             CCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccccc
Q 045653            5 PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus         5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~   84 (272)
                      +....++|++|+++++ +++.+.  +.....+++|++|++.++ .+........+    .+++|++|+++++ .++.++.
T Consensus        47 p~~~~~~l~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~Ls~n-~l~~l~~  117 (330)
T 1xku_A           47 PKDLPPDTALLDLQNN-KITEIK--DGDFKNLKNLHTLILINN-KISKISPGAFA----PLVKLERLYLSKN-QLKELPE  117 (330)
T ss_dssp             CCSCCTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSS-CCCCBCTTTTT----TCTTCCEEECCSS-CCSBCCS
T ss_pred             CccCCCCCeEEECCCC-cCCEeC--hhhhccCCCCCEEECCCC-cCCeeCHHHhc----CCCCCCEEECCCC-cCCccCh
Confidence            4444567888888875 354441  123556888999999887 34433222222    5788888888875 4555554


Q ss_pred             Cccccccc-ccc-----cc---ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCC
Q 045653           85 EVKRHSIS-SNT-----KD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAK  155 (272)
Q Consensus        85 ~~~~~~~~-~~~-----~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~  155 (272)
                      .... .+. +.+     ..   ......+.|+ .+++..+.-.. ....+..+..+++|+.|++.++++..+..     .
T Consensus       118 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~  189 (330)
T 1xku_A          118 KMPK-TLQELRVHENEITKVRKSVFNGLNQMI-VVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQ-----G  189 (330)
T ss_dssp             SCCT-TCCEEECCSSCCCBBCHHHHTTCTTCC-EEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCCS-----S
T ss_pred             hhcc-cccEEECCCCcccccCHhHhcCCcccc-EEECCCCcCCc-cCcChhhccCCCCcCEEECCCCccccCCc-----c
Confidence            3321 111 000     00   0012233444 44444432211 00122334566777777777775554211     1


Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      +  .++|++|++.++. +..+ ++..+..+++|+.|+++++ .+..+...       ....+++|+.|+++++ .++.++
T Consensus       190 ~--~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~lp  256 (330)
T 1xku_A          190 L--PPSLTELHLDGNK-ITKV-DAASLKGLNNLAKLGLSFN-SISAVDNG-------SLANTPHLRELHLNNN-KLVKVP  256 (330)
T ss_dssp             C--CTTCSEEECTTSC-CCEE-CTGGGTTCTTCCEEECCSS-CCCEECTT-------TGGGSTTCCEEECCSS-CCSSCC
T ss_pred             c--cccCCEEECCCCc-CCcc-CHHHhcCCCCCCEEECCCC-cCceeChh-------hccCCCCCCEEECCCC-cCccCC
Confidence            1  2667777776643 4444 3345666777777777765 34444311       1222466667776665 555555


Q ss_pred             CCCccccCCCcCEEeecCCCCCcccc
Q 045653          236 PGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      ...  ..+++|++|+++++ +++.++
T Consensus       257 ~~l--~~l~~L~~L~l~~N-~i~~~~  279 (330)
T 1xku_A          257 GGL--ADHKYIQVVYLHNN-NISAIG  279 (330)
T ss_dssp             TTT--TTCSSCCEEECCSS-CCCCCC
T ss_pred             hhh--ccCCCcCEEECCCC-cCCccC
Confidence            544  45666666666665 344443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.39  E-value=1.3e-11  Score=103.98  Aligned_cols=201  Identities=13%  Similarity=0.122  Sum_probs=137.4

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ..+++++++.+.+ .+++.+   +.  +..++++.|+++++. +.........    .+++|+.|+++++ .++.++...
T Consensus         7 ~~l~~l~~l~~~~-~~l~~i---p~--~~~~~l~~L~L~~N~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~   74 (290)
T 1p9a_G            7 SKVASHLEVNCDK-RNLTAL---PP--DLPKDTTILHLSENL-LYTFSLATLM----PYTRLTQLNLDRA-ELTKLQVDG   74 (290)
T ss_dssp             ECSTTCCEEECTT-SCCSSC---CS--CCCTTCCEEECTTSC-CSEEEGGGGT----TCTTCCEEECTTS-CCCEEECCS
T ss_pred             cccCCccEEECCC-CCCCcC---CC--CCCCCCCEEEcCCCc-CCccCHHHhh----cCCCCCEEECCCC-ccCcccCCC
Confidence            3567888888887 456555   22  224789999999884 4433322222    5789999999875 455554421


Q ss_pred             cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEE
Q 045653           87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLV  166 (272)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~  166 (272)
                      .               .+.|+ .+++..+.- .   .++..+..+++|+.|+++++++..+.+.    .+..+++|++|+
T Consensus        75 ~---------------l~~L~-~L~Ls~N~l-~---~l~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~  130 (290)
T 1p9a_G           75 T---------------LPVLG-TLDLSHNQL-Q---SLPLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELY  130 (290)
T ss_dssp             C---------------CTTCC-EEECCSSCC-S---SCCCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEE
T ss_pred             C---------------CCcCC-EEECCCCcC-C---cCchhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEE
Confidence            1               34444 566655432 2   4555567889999999999987764333    466789999999


Q ss_pred             EecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCc
Q 045653          167 VSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTL  246 (272)
Q Consensus       167 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L  246 (272)
                      +.++ .++.+ +...+..+++|+.|+++++ +++.++.  +.     ...+++|+.|+++++ .++.++...  ...+.|
T Consensus       131 L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~--~~-----~~~l~~L~~L~L~~N-~l~~ip~~~--~~~~~L  197 (290)
T 1p9a_G          131 LKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPA--GL-----LNGLENLDTLLLQEN-SLYTIPKGF--FGSHLL  197 (290)
T ss_dssp             CTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCT--TT-----TTTCTTCCEEECCSS-CCCCCCTTT--TTTCCC
T ss_pred             CCCC-CCCcc-ChhhcccccCCCEEECCCC-cCCccCH--HH-----hcCcCCCCEEECCCC-cCCccChhh--cccccC
Confidence            9984 56666 5566778999999999986 4665552  11     233589999999885 788888876  567789


Q ss_pred             CEEeecCCCC
Q 045653          247 QSLEATGCDN  256 (272)
Q Consensus       247 ~~L~i~~c~~  256 (272)
                      +.+++.+.+-
T Consensus       198 ~~l~L~~Np~  207 (290)
T 1p9a_G          198 PFAFLHGNPW  207 (290)
T ss_dssp             SEEECCSCCB
T ss_pred             CeEEeCCCCc
Confidence            9999987653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.39  E-value=9.9e-12  Score=108.78  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             HHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccc
Q 045653          181 MIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIF  260 (272)
Q Consensus       181 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l  260 (272)
                      .+..+++|++|+++++ .++.+..       .....+++|+.|+++++ +++.++...  ..+++|++|++++| +++.+
T Consensus       243 ~l~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~n-~l~~~  310 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYN-ELEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYG--QPIPTLKVLDLSHN-HLLHV  310 (390)
T ss_dssp             GGGGCTTCSEEECCSS-CCCEEES-------GGGTTCSSCCEEECCSS-CCCEEECSS--SCCTTCCEEECCSS-CCCCC
T ss_pred             HHcCCCCccEEECCCC-cCCCcCh-------hHccccccCCEEECCCC-cCcccCccc--CCCCCCCEEECCCC-cceec
Confidence            3556667777777665 3444431       11233588999999885 677776655  67899999999988 57677


Q ss_pred             cccc
Q 045653          261 GSEL  264 (272)
Q Consensus       261 ~~~~  264 (272)
                      |...
T Consensus       311 ~~~~  314 (390)
T 3o6n_A          311 ERNQ  314 (390)
T ss_dssp             GGGH
T ss_pred             Cccc
Confidence            6554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=111.63  Aligned_cols=139  Identities=14%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeec
Q 045653           35 SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNL  114 (272)
Q Consensus        35 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~  114 (272)
                      ..++|++|+++++. +...+.....    .+++|+.|+++++ .++.+++.....             ++.|+ .+++..
T Consensus        50 ~~~~L~~L~l~~n~-i~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~-------------l~~L~-~L~Ls~  109 (353)
T 2z80_A           50 LTEAVKSLDLSNNR-ITYISNSDLQ----RCVNLQALVLTSN-GINTIEEDSFSS-------------LGSLE-HLDLSY  109 (353)
T ss_dssp             CCTTCCEEECTTSC-CCEECTTTTT----TCTTCCEEECTTS-CCCEECTTTTTT-------------CTTCC-EEECCS
T ss_pred             ccccCcEEECCCCc-CcccCHHHhc----cCCCCCEEECCCC-ccCccCHhhcCC-------------CCCCC-EEECCC
Confidence            35799999999984 5555442222    5899999999986 566554432211             33444 555554


Q ss_pred             cCCCCccccccc-ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEe
Q 045653          115 EDKLDTSTTLFN-DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDI  193 (272)
Q Consensus       115 ~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i  193 (272)
                      +.-.    .++. .+..+++|+.|++.++++..+...   ..+..+++|++|++.++..+..+ +...+.++++|++|++
T Consensus       110 n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          110 NYLS----NLSSSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEI  181 (353)
T ss_dssp             SCCS----SCCHHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEE
T ss_pred             CcCC----cCCHhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEEC
Confidence            4322    1222 245677778888877766543220   13456777777777776666665 4445667777777777


Q ss_pred             ecCCCccee
Q 045653          194 CLCKGLLGI  202 (272)
Q Consensus       194 ~~c~~l~~~  202 (272)
                      .++. +..+
T Consensus       182 ~~n~-l~~~  189 (353)
T 2z80_A          182 DASD-LQSY  189 (353)
T ss_dssp             EETT-CCEE
T ss_pred             CCCC-cCcc
Confidence            7763 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.39  E-value=7.1e-12  Score=107.81  Aligned_cols=214  Identities=11%  Similarity=0.149  Sum_probs=109.7

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ..+++|++|+++++. ++.+    +....+++|+.|++.+|..+.....-  .    .+++|+.|+++++. +..++...
T Consensus       107 ~~l~~L~~L~l~~n~-i~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~--~----~l~~L~~L~l~~~~-~~~~~~~~  174 (347)
T 4fmz_A          107 QNLTNLRELYLNEDN-ISDI----SPLANLTKMYSLNLGANHNLSDLSPL--S----NMTGLNYLTVTESK-VKDVTPIA  174 (347)
T ss_dssp             TTCTTCSEEECTTSC-CCCC----GGGTTCTTCCEEECTTCTTCCCCGGG--T----TCTTCCEEECCSSC-CCCCGGGG
T ss_pred             cCCCcCCEEECcCCc-ccCc----hhhccCCceeEEECCCCCCcccccch--h----hCCCCcEEEecCCC-cCCchhhc
Confidence            356788888888753 3333    22556788888888888655433221  1    35666666666542 22221100


Q ss_pred             cccccc-ccc-----cc-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653           87 KRHSIS-SNT-----KD-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF  159 (272)
Q Consensus        87 ~~~~~~-~~~-----~~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l  159 (272)
                      ....+. ..+     .. ......+.++ .+.+..+.-..    +. .+..+++|+.|++.+|++..+.+      +..+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~-~L~l~~n~l~~----~~-~~~~~~~L~~L~l~~n~l~~~~~------~~~l  242 (347)
T 4fmz_A          175 NLTDLYSLSLNYNQIEDISPLASLTSLH-YFTAYVNQITD----IT-PVANMTRLNSLKIGNNKITDLSP------LANL  242 (347)
T ss_dssp             GCTTCSEEECTTSCCCCCGGGGGCTTCC-EEECCSSCCCC----CG-GGGGCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred             cCCCCCEEEccCCcccccccccCCCccc-eeecccCCCCC----Cc-hhhcCCcCCEEEccCCccCCCcc------hhcC
Confidence            000000 000     00 0011122233 33333332111    11 14556777777777775554211      3356


Q ss_pred             CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC-CC
Q 045653          160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP-GM  238 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~  238 (272)
                      ++|++|++.++ .+..+   ..+..+++|+.|++++| .+..+.         ....+++|+.|++++| .++.... ..
T Consensus       243 ~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~~~l  307 (347)
T 4fmz_A          243 SQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNN-QLGNEDMEVI  307 (347)
T ss_dssp             TTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSS-CCCGGGHHHH
T ss_pred             CCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCC-cCCCcChhHh
Confidence            77777777774 44444   34566777777777776 344432         1223477777777776 3333322 22


Q ss_pred             ccccCCCcCEEeecCCCCCccccc
Q 045653          239 HTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       239 ~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                        ..+++|++|++++|+ ++.+++
T Consensus       308 --~~l~~L~~L~L~~n~-l~~~~~  328 (347)
T 4fmz_A          308 --GGLTNLTTLFLSQNH-ITDIRP  328 (347)
T ss_dssp             --HTCTTCSEEECCSSS-CCCCGG
T ss_pred             --hccccCCEEEccCCc-cccccC
Confidence              456777777777775 544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=6.5e-14  Score=120.06  Aligned_cols=39  Identities=28%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      .+++|++|++.+|..+++. ....+..+++|++|++.+|.
T Consensus       220 ~~~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCT
T ss_pred             hCCCCCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCCC
Confidence            3555555555555544432 11234455555555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.38  E-value=1.6e-11  Score=113.35  Aligned_cols=227  Identities=13%  Similarity=0.158  Sum_probs=132.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc---c
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC---R   84 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~   84 (272)
                      .+++|++|++.++. ++.+.  +.....+++|++|++.++......+.....    .+++|+.|+++++. +....   .
T Consensus       299 ~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~l~~L~~L~l~~n~-l~~~~~~~~  370 (606)
T 3t6q_A          299 GLSTLKKLVLSANK-FENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLE----NLENLRELDLSHDD-IETSDCCNL  370 (606)
T ss_dssp             SCTTCCEEECTTCC-CSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTT----TCTTCCEEECCSSC-CCEEEESTT
T ss_pred             ccccCCEEECccCC-cCcCc--hhhhhccCcCCEEECCCCCcccccchhhhh----ccCcCCEEECCCCc-cccccCcch
Confidence            45788888888763 33331  234456788888888877433222221111    35666666666542 22221   0


Q ss_pred             Ccc-ccccc-cc-----ccc---ccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCC
Q 045653           85 EVK-RHSIS-SN-----TKD---SQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVP  153 (272)
Q Consensus        85 ~~~-~~~~~-~~-----~~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~  153 (272)
                      ... ...+. +.     +..   ......+.|+ .+++..+.-..   .. ...+..+++|+.|++.+|.+..+.+    
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~----  442 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE-LLDLAFTRLKV---KDAQSPFQNLHLLKVLNLSHSLLDISSE----  442 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS-EEECTTCCEEC---CTTCCTTTTCTTCCEEECTTCCCBTTCT----
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCC-eEECCCCcCCC---cccchhhhCcccCCEEECCCCccCCcCH----
Confidence            000 00011 00     000   0112244555 66665544321   11 2236788999999999997765322    


Q ss_pred             CCCCCCCCcCEEEEecCcCCcccc-chHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccc
Q 045653          154 AKFPRFQSLTRLVVSNCHKLKYLF-SASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLR  232 (272)
Q Consensus       154 ~~~~~l~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  232 (272)
                      ..+..+++|++|++.++.--...+ ....+..+++|+.|++++| .++.+...       ....+++|+.|+++++ +++
T Consensus       443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~  513 (606)
T 3t6q_A          443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH-------AFTSLKMMNHVDLSHN-RLT  513 (606)
T ss_dssp             TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CCC
T ss_pred             HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh-------hhccccCCCEEECCCC-ccC
Confidence            246679999999999975432111 1235788999999999998 46665421       1334599999999997 555


Q ss_pred             cccC-CCccccCCCcCEEeecCCCCCcccccc
Q 045653          233 FFYP-GMHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       233 ~~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      .... ..  ..++.| +|+++++ +++.+++.
T Consensus       514 ~~~~~~l--~~l~~L-~L~L~~N-~l~~~~~~  541 (606)
T 3t6q_A          514 SSSIEAL--SHLKGI-YLNLASN-HISIILPS  541 (606)
T ss_dssp             GGGGGGG--TTCCSC-EEECCSS-CCCCCCGG
T ss_pred             cCChhHh--Cccccc-EEECcCC-cccccCHh
Confidence            5443 33  578889 9999988 45555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.37  E-value=2.5e-11  Score=108.17  Aligned_cols=63  Identities=13%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP   77 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~   77 (272)
                      ..++|++|+++++ .++.+ . +.....+++|++|+++++......+.....    .+++|++|+++++.
T Consensus        28 l~~~l~~L~Ls~n-~i~~~-~-~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~----~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           28 LPAHVNYVDLSLN-SIAEL-N-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----GLSSLIILKLDYNQ   90 (455)
T ss_dssp             CCTTCCEEECCSS-CCCEE-C-TTTTSSCTTCCEEECCCCSTTCEECTTTTT----TCTTCCEEECTTCT
T ss_pred             CCCccCEEEecCC-ccCcC-C-hhHhccCccccEEECcCCcccceECccccc----ccccCCEEeCCCCc
Confidence            3367888888875 34444 1 234556888888888887543333332222    46777778777753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=6e-12  Score=106.47  Aligned_cols=225  Identities=17%  Similarity=0.173  Sum_probs=108.1

Q ss_pred             CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccc
Q 045653            3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTS   81 (272)
Q Consensus         3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~   81 (272)
                      .+|...+++|++|+++++ +++.+ . ......+++|++|+++++. +...+...   ... .+++|+.|+++++ .+..
T Consensus        21 ~ip~~~~~~l~~L~L~~n-~l~~i-~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~~~~L~~L~Ls~n-~i~~   92 (306)
T 2z66_A           21 SVPTGIPSSATRLELESN-KLQSL-P-HGVFDKLTQLTKLSLSSNG-LSFKGCCS---QSDFGTTSLKYLDLSFN-GVIT   92 (306)
T ss_dssp             SCCSCCCTTCCEEECCSS-CCCCC-C-TTTTTTCTTCSEEECCSSC-CCEEEEEE---HHHHSCSCCCEEECCSC-SEEE
T ss_pred             cCCCCCCCCCCEEECCCC-ccCcc-C-HhHhhccccCCEEECCCCc-cCcccCcc---cccccccccCEEECCCC-cccc
Confidence            345556678999999885 35554 1 1224568999999999873 33221000   011 4677777777765 3333


Q ss_pred             cccCccc-cccc-ccc-----cc----ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceE-ecc
Q 045653           82 FCREVKR-HSIS-SNT-----KD----SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWR  149 (272)
Q Consensus        82 ~~~~~~~-~~~~-~~~-----~~----~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~  149 (272)
                      ++..... ..++ +.+     ..    .....++.|+ .+++..+.-..   ..+..+..+++|+.|++.+|.+.. +. 
T Consensus        93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-  167 (306)
T 2z66_A           93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHTRV---AFNGIFNGLSSLEVLKMAGNSFQENFL-  167 (306)
T ss_dssp             EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC-EEECTTSCCEE---CSTTTTTTCTTCCEEECTTCEEGGGEE-
T ss_pred             ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC-EEECCCCcCCc---cchhhcccCcCCCEEECCCCccccccc-
Confidence            3321110 0000 000     00    0011122333 33333332111   122234455666666666664432 11 


Q ss_pred             CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653          150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                         |..+..+++|++|++.++ .++.+ ++..+..+++|+.|+++++. ++.+...       ....+++|+.|+++++ 
T Consensus       168 ---~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~l~~L~~L~L~~N-  233 (306)
T 2z66_A          168 ---PDIFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTF-------PYKCLNSLQVLDYSLN-  233 (306)
T ss_dssp             ---CSCCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSC-CSBCCSG-------GGTTCTTCCEEECTTS-
T ss_pred             ---hhHHhhCcCCCEEECCCC-CcCCc-CHHHhcCCCCCCEEECCCCc-cCccChh-------hccCcccCCEeECCCC-
Confidence               123445666666666663 33444 33445566666666666652 3333210       1223467777777765 


Q ss_pred             ccccccCCCccccC-CCcCEEeecCCC
Q 045653          230 KLRFFYPGMHTSEW-PTLQSLEATGCD  255 (272)
Q Consensus       230 ~l~~~~~~~~~~~~-~~L~~L~i~~c~  255 (272)
                      .++....... ..+ ++|++|++++++
T Consensus       234 ~l~~~~~~~~-~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          234 HIMTSKKQEL-QHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred             CCcccCHHHH-HhhhccCCEEEccCCC
Confidence            3443332221 344 367777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.36  E-value=7.2e-12  Score=119.12  Aligned_cols=231  Identities=13%  Similarity=-0.004  Sum_probs=129.0

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++.--..+   +...+.+++|+.|++.+|..-...+ ....    .+++|+.|+++++.-...+|....
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~----~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIP-QELM----YVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             GCTTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCCCSCCC-GGGG----GCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cCCCCCEEECcCCcccCcc---cHHHhcCCCCCEEECCCCcccCcCC-HHHc----CCCCceEEEecCCcccCcCCHHHh
Confidence            4578888888886322222   3445567888888888774321111 1111    356666666665532222222111


Q ss_pred             c-cccc-ccc-----c---cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccC-------
Q 045653           88 R-HSIS-SNT-----K---DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRS-------  150 (272)
Q Consensus        88 ~-~~~~-~~~-----~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~-------  150 (272)
                      . ..+. +.+     .   ......++.|+ .+++..+.-..   .++..+..+++|+.|++.+|++....+.       
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  563 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLA-ILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG  563 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEE---ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCC-EEECCCCcccC---cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence            0 0010 000     0   00011234444 55565554332   4555667778888888887744311110       


Q ss_pred             -----------------------------------------------------------CCCCCCCCCCCcCEEEEecCc
Q 045653          151 -----------------------------------------------------------QVPAKFPRFQSLTRLVVSNCH  171 (272)
Q Consensus       151 -----------------------------------------------------------~~~~~~~~l~~L~~L~i~~c~  171 (272)
                                                                                 ..|..+..+++|++|+++++.
T Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~  643 (768)
T 3rgz_A          564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM  643 (768)
T ss_dssp             CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred             hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence                                                                       112234456788888888754


Q ss_pred             CCccccchHHHhccccCcEEEeecCCCcc-eeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653          172 KLKYLFSASMIRSVEQLQHLDICLCKGLL-GIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE  250 (272)
Q Consensus       172 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  250 (272)
                       ++...| ..++++++|+.|+++++. ++ .++  .      .+..+++|+.|+++++.--..+|...  ..+++|++|+
T Consensus       644 -l~g~ip-~~l~~l~~L~~L~Ls~N~-l~g~ip--~------~l~~L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~  710 (768)
T 3rgz_A          644 -LSGYIP-KEIGSMPYLFILNLGHND-ISGSIP--D------EVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEID  710 (768)
T ss_dssp             -CBSCCC-GGGGGCTTCCEEECCSSC-CCSCCC--G------GGGGCTTCCEEECCSSCCEECCCGGG--GGCCCCSEEE
T ss_pred             -ccccCC-HHHhccccCCEEeCcCCc-cCCCCC--h------HHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEE
Confidence             443324 457788889999888864 43 333  1      23446899999999975444666666  7889999999


Q ss_pred             ecCCCCCcccccc
Q 045653          251 ATGCDNLKIFGSE  263 (272)
Q Consensus       251 i~~c~~l~~l~~~  263 (272)
                      +++++--..+|.+
T Consensus       711 ls~N~l~g~iP~~  723 (768)
T 3rgz_A          711 LSNNNLSGPIPEM  723 (768)
T ss_dssp             CCSSEEEEECCSS
T ss_pred             CcCCcccccCCCc
Confidence            9988544445544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.36  E-value=5.6e-12  Score=107.40  Aligned_cols=215  Identities=12%  Similarity=0.050  Sum_probs=112.9

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++ +++.+.  +.....+++|++|+++++.- .....  ..    .+++|+.|+++++ .++.++....
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~----~l~~L~~L~Ls~n-~l~~l~~~~~  100 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNVL-YETLD--LE----SLSTLRTLDLNNN-YVQELLVGPS  100 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCC--HHHHTTCTTCCEEECTTSCC-EEEEE--ET----TCTTCCEEECCSS-EEEEEEECTT
T ss_pred             cCCCCCEEECcCC-ccCcCC--HHHhhCCCcCCEEECCCCcC-Ccchh--hh----hcCCCCEEECcCC-ccccccCCCC
Confidence            3568999999885 444441  13345689999999998843 32221  11    4788888888876 4555443211


Q ss_pred             cccccc---ccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCE
Q 045653           88 RHSISS---NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTR  164 (272)
Q Consensus        88 ~~~~~~---~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~  164 (272)
                      -..+..   .+.......++.|+ .+++..+.-..   ..+..+..+++|+.|++++|.+..+.+...   ...+++|++
T Consensus       101 L~~L~l~~n~l~~~~~~~~~~L~-~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~  173 (317)
T 3o53_A          101 IETLHAANNNISRVSCSRGQGKK-NIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEH  173 (317)
T ss_dssp             CCEEECCSSCCSEEEECCCSSCE-EEECCSSCCCS---GGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCE
T ss_pred             cCEEECCCCccCCcCccccCCCC-EEECCCCCCCC---ccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCE
Confidence            110000   00000011123333 44443332211   112233455666666666665554322211   123566666


Q ss_pred             EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653          165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP  244 (272)
Q Consensus       165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  244 (272)
                      |++.++. ++.+ +  ....+++|+.|+++++ .++.++.  .      ...+++|+.|+++++ .++.++...  ..++
T Consensus       174 L~L~~N~-l~~~-~--~~~~l~~L~~L~Ls~N-~l~~l~~--~------~~~l~~L~~L~L~~N-~l~~l~~~~--~~l~  237 (317)
T 3o53_A          174 LNLQYNF-IYDV-K--GQVVFAKLKTLDLSSN-KLAFMGP--E------FQSAAGVTWISLRNN-KLVLIEKAL--RFSQ  237 (317)
T ss_dssp             EECTTSC-CCEE-E--CCCCCTTCCEEECCSS-CCCEECG--G------GGGGTTCSEEECTTS-CCCEECTTC--CCCT
T ss_pred             EECCCCc-Cccc-c--cccccccCCEEECCCC-cCCcchh--h------hcccCcccEEECcCC-cccchhhHh--hcCC
Confidence            6666633 4444 2  1224666666666665 3544431  1      222477777777775 666666654  5677


Q ss_pred             CcCEEeecCCCC
Q 045653          245 TLQSLEATGCDN  256 (272)
Q Consensus       245 ~L~~L~i~~c~~  256 (272)
                      +|+.|++++++-
T Consensus       238 ~L~~L~l~~N~~  249 (317)
T 3o53_A          238 NLEHFDLRGNGF  249 (317)
T ss_dssp             TCCEEECTTCCC
T ss_pred             CCCEEEccCCCc
Confidence            777777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.35  E-value=1.5e-11  Score=103.99  Aligned_cols=213  Identities=13%  Similarity=0.104  Sum_probs=111.4

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc---cCcc-c
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC---REVK-R   88 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~~-~   88 (272)
                      +.+++++ .+++.+   +.  +..++|++|+++++. +...+.....    .+++|+.|+++++ .+....   .... .
T Consensus        10 ~~l~c~~-~~l~~i---p~--~~~~~l~~L~L~~n~-l~~i~~~~~~----~l~~L~~L~L~~n-~l~~~~~~~~~~~~~   77 (306)
T 2z66_A           10 TEIRCNS-KGLTSV---PT--GIPSSATRLELESNK-LQSLPHGVFD----KLTQLTKLSLSSN-GLSFKGCCSQSDFGT   77 (306)
T ss_dssp             TEEECCS-SCCSSC---CS--CCCTTCCEEECCSSC-CCCCCTTTTT----TCTTCSEEECCSS-CCCEEEEEEHHHHSC
T ss_pred             CEEEcCC-CCcccC---CC--CCCCCCCEEECCCCc-cCccCHhHhh----ccccCCEEECCCC-ccCcccCcccccccc
Confidence            4555554 345555   22  235799999999984 4544433222    5899999999986 333221   1100 0


Q ss_pred             cccc-ccc-----cc--ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCC
Q 045653           89 HSIS-SNT-----KD--SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQ  160 (272)
Q Consensus        89 ~~~~-~~~-----~~--~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~  160 (272)
                      ..+. +.+     ..  ......+.|+ .+++..+.-..  ......+..+++|+.|++.+|.+..+.+.    .+..++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~  150 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLE-HLDFQHSNLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLS  150 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCC-EEECTTSEEES--STTTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCT
T ss_pred             cccCEEECCCCccccChhhcCCCCCCC-EEECCCCcccc--cccchhhhhccCCCEEECCCCcCCccchh----hcccCc
Confidence            1111 000     00  0011122222 33332221100  00012345566777777776655543222    344567


Q ss_pred             CcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcc
Q 045653          161 SLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHT  240 (272)
Q Consensus       161 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  240 (272)
                      +|++|++.++.-.... .+..+..+++|+.|+++++ .++.+..       .....+++|+.|+++++ .++.++... .
T Consensus       151 ~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~-~  219 (306)
T 2z66_A          151 SLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTFP-Y  219 (306)
T ss_dssp             TCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECT-------TTTTTCTTCCEEECTTS-CCSBCCSGG-G
T ss_pred             CCCEEECCCCcccccc-chhHHhhCcCCCEEECCCC-CcCCcCH-------HHhcCCCCCCEEECCCC-ccCccChhh-c
Confidence            7777777765422212 1234566777777777776 3544431       11234588999999886 566655422 1


Q ss_pred             ccCCCcCEEeecCCC
Q 045653          241 SEWPTLQSLEATGCD  255 (272)
Q Consensus       241 ~~~~~L~~L~i~~c~  255 (272)
                      ..+++|++|++++++
T Consensus       220 ~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          220 KCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cCcccCCEeECCCCC
Confidence            568899999999884

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.34  E-value=2.6e-11  Score=104.28  Aligned_cols=210  Identities=17%  Similarity=0.166  Sum_probs=99.7

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++ .++++    +....+++|++|++.+| .+...+.  ..    .+++|++|+++++. +..++....
T Consensus        64 ~~~~L~~L~l~~n-~i~~~----~~~~~l~~L~~L~L~~n-~i~~~~~--~~----~l~~L~~L~l~~n~-i~~~~~~~~  130 (347)
T 4fmz_A           64 YLTNLEYLNLNGN-QITDI----SPLSNLVKLTNLYIGTN-KITDISA--LQ----NLTNLRELYLNEDN-ISDISPLAN  130 (347)
T ss_dssp             GCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCCGG--GT----TCTTCSEEECTTSC-CCCCGGGTT
T ss_pred             hcCCccEEEccCC-ccccc----hhhhcCCcCCEEEccCC-cccCchH--Hc----CCCcCCEEECcCCc-ccCchhhcc
Confidence            4678888888886 44444    22556788888888877 3333211  11    45666666666542 333222100


Q ss_pred             ccccc-ccc------c-cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCC--------
Q 045653           88 RHSIS-SNT------K-DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQ--------  151 (272)
Q Consensus        88 ~~~~~-~~~------~-~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~--------  151 (272)
                      ...+. ..+      . .......+.++ .+.+..+.-..    +. .+..+++|+.|++.+|++..+..-.        
T Consensus       131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~-~L~l~~~~~~~----~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L  204 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSPLSNMTGLN-YLTVTESKVKD----VT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYF  204 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGGGTTCTTCC-EEECCSSCCCC----CG-GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             CCceeEEECCCCCCcccccchhhCCCCc-EEEecCCCcCC----ch-hhccCCCCCEEEccCCcccccccccCCCcccee
Confidence            00000 000      0 00011122333 34444332211    11 1344556666666655443321100        


Q ss_pred             ---------CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCe
Q 045653          152 ---------VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVST  222 (272)
Q Consensus       152 ---------~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~  222 (272)
                               .+ .+..+++|++|++.+|. ++.+ +.  +..+++|+.|++++| .++.+         .....+++|+.
T Consensus       205 ~l~~n~l~~~~-~~~~~~~L~~L~l~~n~-l~~~-~~--~~~l~~L~~L~l~~n-~l~~~---------~~~~~l~~L~~  269 (347)
T 4fmz_A          205 TAYVNQITDIT-PVANMTRLNSLKIGNNK-ITDL-SP--LANLSQLTWLEIGTN-QISDI---------NAVKDLTKLKM  269 (347)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GG--GTTCTTCCEEECCSS-CCCCC---------GGGTTCTTCCE
T ss_pred             ecccCCCCCCc-hhhcCCcCCEEEccCCc-cCCC-cc--hhcCCCCCEEECCCC-ccCCC---------hhHhcCCCcCE
Confidence                     00 02234555555555532 2333 21  445555555555554 23222         11334578888


Q ss_pred             eecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          223 LRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       223 L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      |+++++ .++.++. .  ..+++|++|++++|+
T Consensus       270 L~l~~n-~l~~~~~-~--~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          270 LNVGSN-QISDISV-L--NNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             EECCSS-CCCCCGG-G--GGCTTCSEEECCSSC
T ss_pred             EEccCC-ccCCChh-h--cCCCCCCEEECcCCc
Confidence            888876 5665532 2  577888888888874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.34  E-value=1.1e-11  Score=105.24  Aligned_cols=190  Identities=16%  Similarity=0.202  Sum_probs=128.3

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|.+.++ +++.+    +....+++|++|++++| .+.....  ..    .+++|+.|+++++. ++.++... 
T Consensus        39 ~l~~L~~L~l~~~-~i~~l----~~~~~l~~L~~L~L~~n-~i~~~~~--~~----~l~~L~~L~L~~n~-l~~~~~~~-  104 (308)
T 1h6u_A           39 DLDGITTLSAFGT-GVTTI----EGVQYLNNLIGLELKDN-QITDLAP--LK----NLTKITELELSGNP-LKNVSAIA-  104 (308)
T ss_dssp             HHHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGG--GT----TCCSCCEEECCSCC-CSCCGGGT-
T ss_pred             HcCCcCEEEeeCC-CccCc----hhhhccCCCCEEEccCC-cCCCChh--Hc----cCCCCCEEEccCCc-CCCchhhc-
Confidence            4678999999886 44444    24556899999999988 4444332  11    58899999999864 55543211 


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                                    .++.|+ .+++..+.-..    ++ .+..+++|+.|++.+|++..+.+      +..+++|++|++
T Consensus       105 --------------~l~~L~-~L~l~~n~l~~----~~-~l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l  158 (308)
T 1h6u_A          105 --------------GLQSIK-TLDLTSTQITD----VT-PLAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSI  158 (308)
T ss_dssp             --------------TCTTCC-EEECTTSCCCC----CG-GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEEC
T ss_pred             --------------CCCCCC-EEECCCCCCCC----ch-hhcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEc
Confidence                          134444 66666554221    22 25778899999999987665321      446889999999


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcC
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQ  247 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  247 (272)
                      .++ .+.++ +.  +..+++|+.|+++++ .+..+..         ...+++|+.|+++++ .++.++. .  ..+++|+
T Consensus       159 ~~n-~l~~~-~~--l~~l~~L~~L~l~~n-~l~~~~~---------l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~  220 (308)
T 1h6u_A          159 GNA-QVSDL-TP--LANLSKLTTLKADDN-KISDISP---------LASLPNLIEVHLKNN-QISDVSP-L--ANTSNLF  220 (308)
T ss_dssp             CSS-CCCCC-GG--GTTCTTCCEEECCSS-CCCCCGG---------GGGCTTCCEEECTTS-CCCBCGG-G--TTCTTCC
T ss_pred             cCC-cCCCC-hh--hcCCCCCCEEECCCC-ccCcChh---------hcCCCCCCEEEccCC-ccCcccc-c--cCCCCCC
Confidence            885 56666 32  778899999999886 3554432         234588999999886 6666653 3  6788999


Q ss_pred             EEeecCCC
Q 045653          248 SLEATGCD  255 (272)
Q Consensus       248 ~L~i~~c~  255 (272)
                      .|++++++
T Consensus       221 ~L~l~~N~  228 (308)
T 1h6u_A          221 IVTLTNQT  228 (308)
T ss_dssp             EEEEEEEE
T ss_pred             EEEccCCe
Confidence            99988764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.34  E-value=4.4e-11  Score=99.46  Aligned_cols=186  Identities=14%  Similarity=0.153  Sum_probs=125.6

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....+++++|+++++ +++.+ . +.....+++|++|++.++ .+...+.....    .+++|+.|+++++ .++.++
T Consensus        31 ip~~~~~~l~~L~l~~n-~l~~~-~-~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~----~l~~L~~L~l~~n-~l~~~~  101 (270)
T 2o6q_A           31 IPSNIPADTKKLDLQSN-KLSSL-P-SKAFHRLTKLRLLYLNDN-KLQTLPAGIFK----ELKNLETLWVTDN-KLQALP  101 (270)
T ss_dssp             CCSCCCTTCSEEECCSS-CCSCC-C-TTSSSSCTTCCEEECCSS-CCSCCCTTTTS----SCTTCCEEECCSS-CCCCCC
T ss_pred             cCCCCCCCCCEEECcCC-CCCee-C-HHHhcCCCCCCEEECCCC-ccCeeChhhhc----CCCCCCEEECCCC-cCCcCC
Confidence            34445568999999985 35555 1 134567899999999997 34444332222    5899999999985 455555


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ......             ++.|+ .+.+..+.-..   ..+..+..+++|+.|++.++++..+.+.    .+..+++|+
T Consensus       102 ~~~~~~-------------l~~L~-~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~  160 (270)
T 2o6q_A          102 IGVFDQ-------------LVNLA-ELRLDRNQLKS---LPPRVFDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLK  160 (270)
T ss_dssp             TTTTTT-------------CSSCC-EEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred             HhHccc-------------ccCCC-EEECCCCccCe---eCHHHhCcCcCCCEEECCCCcCCccCHh----HccCCcccc
Confidence            432221             34455 66666543222   1223457889999999999987764332    356789999


Q ss_pred             EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      +|++.++ .++.+ +...+..+++|+.|++.++ .++.++.  .     ....+++|+.|++.+.+
T Consensus       161 ~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          161 ELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPE--G-----AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCT--T-----TTTTCTTCCEEECCSSC
T ss_pred             eeEecCC-cCcEe-ChhHhccCCCcCEEECCCC-cCCcCCH--H-----HhccccCCCEEEecCCC
Confidence            9999985 56666 5556788999999999997 5665542  1     12335899999998765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=4e-11  Score=106.83  Aligned_cols=113  Identities=19%  Similarity=0.233  Sum_probs=61.4

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|++..+.+.    .+..+++|++|++.++ .+..+ ++..+..+++|+.|+++++ .++.+..   
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~---  364 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQN-FLGSI-DSRMFENLDKLEVLDLSYN-HIRALGD---  364 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSS-CCCEE-CGGGGTTCTTCCEEECCSS-CCCEECT---
T ss_pred             cccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCC-ccCCc-ChhHhcCcccCCEEECCCC-cccccCh---
Confidence            34455555555555544443222    2345566666666653 33444 3344555666666666665 3443321   


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~  256 (272)
                          .....+++|+.|+++++ +++.++.... ..+++|++|++++++-
T Consensus       365 ----~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          365 ----QSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             ----TTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred             ----hhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCCc
Confidence                11233577788887774 5666655321 4677788888777643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.33  E-value=4.2e-12  Score=108.06  Aligned_cols=63  Identities=11%  Similarity=0.108  Sum_probs=41.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP   77 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~   77 (272)
                      .+++|++|+++++.++....  +...+.+++|++|+++++. +.........    .+++|++|+++++.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~----~l~~L~~L~Ls~N~  136 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTN-VSGAIPDFLS----QIKTLVTLDFSYNA  136 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCC--CGGGGGCTTCSEEEEEEEC-CEEECCGGGG----GCTTCCEEECCSSE
T ss_pred             CCCCCCeeeCCCCCcccccC--ChhHhcCCCCCEEECcCCe-eCCcCCHHHh----CCCCCCEEeCCCCc
Confidence            56889999998655555331  3455678999999999884 3322221111    57888888888753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=1.4e-11  Score=111.07  Aligned_cols=216  Identities=13%  Similarity=0.061  Sum_probs=120.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+|+++ +++.+.  +...+.+++|+.|++++|. +.....  ..    .+++|+.|+++++ .++.++....
T Consensus        32 ~~~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~----~l~~L~~L~Ls~N-~l~~l~~~~~  100 (487)
T 3oja_A           32 SAWNVKELDLSGN-PLSQIS--AADLAPFTKLELLNLSSNV-LYETLD--LE----SLSTLRTLDLNNN-YVQELLVGPS  100 (487)
T ss_dssp             TGGGCCEEECCSS-CCCCCC--GGGGTTCTTCCEEECTTSC-CEEEEE--CT----TCTTCCEEECCSS-EEEEEEECTT
T ss_pred             cCCCccEEEeeCC-cCCCCC--HHHHhCCCCCCEEEeeCCC-CCCCcc--cc----cCCCCCEEEecCC-cCCCCCCCCC
Confidence            4568999999985 444441  2345678999999999985 333222  11    5789999999886 5555554311


Q ss_pred             cccccc---ccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCE
Q 045653           88 RHSISS---NTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTR  164 (272)
Q Consensus        88 ~~~~~~---~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~  164 (272)
                      -..+..   .+.......++.|+ .+.+..+.-..   ..+..+..+++|+.|++++|.+..+.+..+   ...+++|++
T Consensus       101 L~~L~L~~N~l~~~~~~~l~~L~-~L~L~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~  173 (487)
T 3oja_A          101 IETLHAANNNISRVSCSRGQGKK-NIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEH  173 (487)
T ss_dssp             CCEEECCSSCCCCEEECCCSSCE-EEECCSSCCCS---GGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCE
T ss_pred             cCEEECcCCcCCCCCccccCCCC-EEECCCCCCCC---CCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccE
Confidence            111100   00000011123344 44444433221   122334556777777777775555333211   114667777


Q ss_pred             EEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC
Q 045653          165 LVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP  244 (272)
Q Consensus       165 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  244 (272)
                      |+++++. ++.+ +  ....+++|+.|+++++ .+..++..        ...+++|+.|+++++ .++.++...  ..++
T Consensus       174 L~Ls~N~-l~~~-~--~~~~l~~L~~L~Ls~N-~l~~~~~~--------~~~l~~L~~L~Ls~N-~l~~lp~~l--~~l~  237 (487)
T 3oja_A          174 LNLQYNF-IYDV-K--GQVVFAKLKTLDLSSN-KLAFMGPE--------FQSAAGVTWISLRNN-KLVLIEKAL--RFSQ  237 (487)
T ss_dssp             EECTTSC-CCEE-E--CCCCCTTCCEEECCSS-CCCEECGG--------GGGGTTCSEEECTTS-CCCEECTTC--CCCT
T ss_pred             EecCCCc-cccc-c--ccccCCCCCEEECCCC-CCCCCCHh--------HcCCCCccEEEecCC-cCcccchhh--ccCC
Confidence            7777643 4444 2  1235677777777765 35554421        223477888888775 666666655  5677


Q ss_pred             CcCEEeecCCCCC
Q 045653          245 TLQSLEATGCDNL  257 (272)
Q Consensus       245 ~L~~L~i~~c~~l  257 (272)
                      +|+.|++++++-.
T Consensus       238 ~L~~L~l~~N~l~  250 (487)
T 3oja_A          238 NLEHFDLRGNGFH  250 (487)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             CCCEEEcCCCCCc
Confidence            8888888777543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.33  E-value=1.7e-11  Score=104.39  Aligned_cols=211  Identities=16%  Similarity=0.140  Sum_probs=127.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++. ++..    .+...+++|++|+++++. +...+         ..++|+.|+++++ ++..++....
T Consensus        56 ~l~~L~~L~Ls~n~-l~~~----~~~~~l~~L~~L~Ls~n~-l~~l~---------~~~~L~~L~l~~n-~l~~~~~~~~  119 (317)
T 3o53_A           56 PFTKLELLNLSSNV-LYET----LDLESLSTLRTLDLNNNY-VQELL---------VGPSIETLHAANN-NISRVSCSRG  119 (317)
T ss_dssp             TCTTCCEEECTTSC-CEEE----EEETTCTTCCEEECCSSE-EEEEE---------ECTTCCEEECCSS-CCSEEEECCC
T ss_pred             CCCcCCEEECCCCc-CCcc----hhhhhcCCCCEEECcCCc-ccccc---------CCCCcCEEECCCC-ccCCcCcccc
Confidence            56889999998853 3333    225678999999999883 43322         1345555555443 2222221111


Q ss_pred             ccccc-cc-----cc---cccccccceeecceeeeccCCCCccccccccc-CCCCCccEEEeccccceEeccCCCCCCCC
Q 045653           88 RHSIS-SN-----TK---DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDK-VRLPKLEALELHEINVEKIWRSQVPAKFP  157 (272)
Q Consensus        88 ~~~~~-~~-----~~---~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~i~~~~~~~~~~  157 (272)
                      .. +. +.     +.   .......+.|+ .+++..+.-..   ..+..+ ..+++|+.|++++|.+..+. .     ..
T Consensus       120 ~~-L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-----~~  188 (317)
T 3o53_A          120 QG-KKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDT---VNFAELAASSDTLEHLNLQYNFIYDVK-G-----QV  188 (317)
T ss_dssp             SS-CEEEECCSSCCCSGGGBCTGGGSSEE-EEECTTSCCCE---EEGGGGGGGTTTCCEEECTTSCCCEEE-C-----CC
T ss_pred             CC-CCEEECCCCCCCCccchhhhccCCCC-EEECCCCCCCc---ccHHHHhhccCcCCEEECCCCcCcccc-c-----cc
Confidence            00 00 00     00   00111244555 66666543222   112222 36799999999999887752 2     22


Q ss_pred             CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc-ccccC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL-RFFYP  236 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~  236 (272)
                      .+++|++|++.++ .++.+ +.. +..+++|+.|+++++ .++.++  ...      ..+++|+.|++++++-. ...+.
T Consensus       189 ~l~~L~~L~Ls~N-~l~~l-~~~-~~~l~~L~~L~L~~N-~l~~l~--~~~------~~l~~L~~L~l~~N~~~~~~~~~  256 (317)
T 3o53_A          189 VFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISLRNN-KLVLIE--KAL------RFSQNLEHFDLRGNGFHCGTLRD  256 (317)
T ss_dssp             CCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEECTTS-CCCEEC--TTC------CCCTTCCEEECTTCCCBHHHHHH
T ss_pred             ccccCCEEECCCC-cCCcc-hhh-hcccCcccEEECcCC-cccchh--hHh------hcCCCCCEEEccCCCccCcCHHH
Confidence            5899999999985 56666 543 788999999999997 577665  222      33599999999987543 23333


Q ss_pred             CCccccCCCcCEEeecCCCCCcc
Q 045653          237 GMHTSEWPTLQSLEATGCDNLKI  259 (272)
Q Consensus       237 ~~~~~~~~~L~~L~i~~c~~l~~  259 (272)
                      ..  ..++.|+.+++.+++.++.
T Consensus       257 ~~--~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          257 FF--SKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             HH--HTCHHHHHHHHHHHHHHHS
T ss_pred             HH--hccccceEEECCCchhccC
Confidence            33  5678888888886655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.33  E-value=5.2e-11  Score=101.94  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|...+++|++|++.++. ++.+.  +.....+++|++|++.++. +........+    .+++|++|+++++ .++.++
T Consensus        48 ip~~~~~~l~~L~l~~n~-i~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~l~  118 (332)
T 2ft3_A           48 VPKEISPDTTLLDLQNND-ISELR--KDDFKGLQHLYALVLVNNK-ISKIHEKAFS----PLRKLQKLYISKN-HLVEIP  118 (332)
T ss_dssp             CCSCCCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSSC-CCEECGGGST----TCTTCCEEECCSS-CCCSCC
T ss_pred             cCCCCCCCCeEEECCCCc-CCccC--HhHhhCCCCCcEEECCCCc-cCccCHhHhh----CcCCCCEEECCCC-cCCccC
Confidence            344455678888887743 44441  1234567888888888873 4443222222    4788888888875 455555


Q ss_pred             cC
Q 045653           84 RE   85 (272)
Q Consensus        84 ~~   85 (272)
                      ..
T Consensus       119 ~~  120 (332)
T 2ft3_A          119 PN  120 (332)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.32  E-value=1.7e-11  Score=116.54  Aligned_cols=156  Identities=14%  Similarity=0.071  Sum_probs=93.7

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      +++|++|.+.++.-...+   +.....+++|++|++++|. +........+    .+++|+.|+++++.--..+|.....
T Consensus       393 ~~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~----~l~~L~~L~L~~n~l~~~~p~~~~~  464 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKI---PPTLSNCSELVSLHLSFNY-LSGTIPSSLG----SLSKLRDLKLWLNMLEGEIPQELMY  464 (768)
T ss_dssp             TCCCCEEECCSSEEEEEC---CGGGGGCTTCCEEECCSSE-EESCCCGGGG----GCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cCCccEEECCCCcccccc---CHHHhcCCCCCEEECcCCc-ccCcccHHHh----cCCCCCEEECCCCcccCcCCHHHcC
Confidence            678999999997543333   3456678999999999984 3322222212    5899999999987544344432111


Q ss_pred             cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS  168 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~  168 (272)
                                    .+.|+ .+++..+.-..   .++..+..+++|+.|++.+|++....    |.++..+++|++|+++
T Consensus       465 --------------l~~L~-~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          465 --------------VKTLE-TLILDFNDLTG---EIPSGLSNCTNLNWISLSNNRLTGEI----PKWIGRLENLAILKLS  522 (768)
T ss_dssp             --------------CTTCC-EEECCSSCCCS---CCCGGGGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECC
T ss_pred             --------------CCCce-EEEecCCcccC---cCCHHHhcCCCCCEEEccCCccCCcC----ChHHhcCCCCCEEECC
Confidence                          23344 55555544332   34445566677777777777554322    2244456777777777


Q ss_pred             cCcCCccccchHHHhccccCcEEEeecC
Q 045653          169 NCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +|.-...+ | ..+..+++|+.|++++|
T Consensus       523 ~N~l~~~~-p-~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          523 NNSFSGNI-P-AELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             SSCCEEEC-C-GGGGGCTTCCEEECCSS
T ss_pred             CCcccCcC-C-HHHcCCCCCCEEECCCC
Confidence            65433233 3 34566777777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.32  E-value=7.8e-11  Score=101.74  Aligned_cols=220  Identities=15%  Similarity=0.121  Sum_probs=133.2

Q ss_pred             CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .+|...++++++|+|++ .+++.+..  .....+++|++|+++++..+...+.....    .+++|+++.+.++.+++.+
T Consensus        23 ~iP~~l~~~l~~L~Ls~-N~i~~i~~--~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~----~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           23 EIPSDLPRNAIELRFVL-TKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             SCCTTCCTTCSEEEEES-CCCSEECT--TSSTTCTTCCEEEEECCTTCCEECTTSBC----SCTTCCEEEEEEETTCCEE
T ss_pred             ccCcCcCCCCCEEEccC-CcCCCcCH--HHHcCCCCCCEEECcCCCCCCccChhHhh----cchhhhhhhcccCCccccc
Confidence            34555567899999988 45666611  23456889999999998655544433222    3555555555555555555


Q ss_pred             ccCcccc--ccc-ccccccc--------ccccceeecceeeeccCCCCcccccc-cccCCC-CCccEEEeccccceEecc
Q 045653           83 CREVKRH--SIS-SNTKDSQ--------DQSMTAITCSYEVNLEDKLDTSTTLF-NDKVRL-PKLEALELHEINVEKIWR  149 (272)
Q Consensus        83 ~~~~~~~--~~~-~~~~~~~--------~~~~~~l~~~l~i~~~~~~~~~~~~~-~~~~~l-~~L~~L~L~~~~l~~i~~  149 (272)
                      +++....  .+. +.+..-+        ......+. .+.+..+..+.   .++ ..+..+ ..++.|++.+++++.+..
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~l~l~~~~~i~---~l~~~~f~~~~~~l~~L~L~~N~i~~i~~  171 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV-LLDIQDNINIH---TIERNSFVGLSFESVILWLNKNGIQEIHN  171 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE-EEEEESCTTCC---EECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhh-hhhhccccccc---cccccchhhcchhhhhhccccccccCCCh
Confidence            4432221  111 0000000        00011111 33344433333   222 123333 367888888888877544


Q ss_pred             CCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653          150 SQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       150 ~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      .     .....+|+++.+.+++.++.+ +...+.++++|+.|+++++ +++.++.          ..+.+|+.|.+.++.
T Consensus       172 ~-----~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N-~l~~lp~----------~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          172 S-----AFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRT-RIHSLPS----------YGLENLKKLRARSTY  234 (350)
T ss_dssp             T-----SSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTS-CCCCCCS----------SSCTTCCEEECTTCT
T ss_pred             h-----hccccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCC-CcCccCh----------hhhccchHhhhccCC
Confidence            3     224578899999888888887 7667788999999999986 5766652          124778888888888


Q ss_pred             ccccccCCCccccCCCcCEEeecC
Q 045653          230 KLRFFYPGMHTSEWPTLQSLEATG  253 (272)
Q Consensus       230 ~l~~~~~~~~~~~~~~L~~L~i~~  253 (272)
                      +++.+|. .  ..+++|+.+++.+
T Consensus       235 ~l~~lP~-l--~~l~~L~~l~l~~  255 (350)
T 4ay9_X          235 NLKKLPT-L--EKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCCC-T--TTCCSCCEEECSC
T ss_pred             CcCcCCC-c--hhCcChhhCcCCC
Confidence            8888875 2  5788999988865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.31  E-value=4e-11  Score=110.80  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCRE   85 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~   85 (272)
                      .+++++.+.+.++ .+..+ + +.....+++|+.|++.++. +...+.....    .+++|+.|+++++. +..+++.
T Consensus        49 ~l~~l~~l~l~~~-~l~~l-p-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n~-l~~~~~~  117 (597)
T 3oja_B           49 TLNNQKIVTFKNS-TMRKL-P-AALLDSFRQVELLNLNDLQ-IEEIDTYAFA----YAHTIQKLYMGFNA-IRYLPPH  117 (597)
T ss_dssp             GGCCCSEEEESSC-EESEE-C-THHHHHCCCCSEEECTTSC-CCEECTTTTT----TCTTCCEEECCSSC-CCCCCTT
T ss_pred             cCCCceEEEeeCC-CCCCc-C-HHHHccCCCCcEEECCCCC-CCCCChHHhc----CCCCCCEEECCCCc-CCCCCHH
Confidence            4567788888774 34444 1 1123568999999999984 5554433322    58999999999864 6665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.31  E-value=1.9e-13  Score=117.07  Aligned_cols=190  Identities=17%  Similarity=0.125  Sum_probs=121.9

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ..+++|++|+++++. +... ..+.....+++|++|++.+|. +.........    .+++|++|++++|..+++.    
T Consensus        90 ~~~~~L~~L~L~~~~-l~~~-~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~----~~~~L~~L~L~~~~~l~~~----  158 (336)
T 2ast_B           90 FSPFRVQHMDLSNSV-IEVS-TLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA----KNSNLVRLNLSGCSGFSEF----  158 (336)
T ss_dssp             CCCBCCCEEECTTCE-ECHH-HHHHHHTTBCCCSEEECTTCB-CCHHHHHHHT----TCTTCSEEECTTCBSCCHH----
T ss_pred             ccCCCCCEEEccCCC-cCHH-HHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHh----cCCCCCEEECCCCCCCCHH----
Confidence            357899999999975 4322 012334568999999999994 4322111111    5799999999998665431    


Q ss_pred             cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCC-CcCE
Q 045653           87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQ-SLTR  164 (272)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~-~L~~  164 (272)
                                                          .++..+..+++|+.|++.+| ++....   ++..+..++ +|++
T Consensus       159 ------------------------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~  199 (336)
T 2ast_B          159 ------------------------------------ALQTLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQ  199 (336)
T ss_dssp             ------------------------------------HHHHHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCE
T ss_pred             ------------------------------------HHHHHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCE
Confidence                                                11112345788999999988 766410   111234578 9999


Q ss_pred             EEEecCc-CCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccC
Q 045653          165 LVVSNCH-KLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW  243 (272)
Q Consensus       165 L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  243 (272)
                      |++.+|. .+++-.....+..+++|++|++++|..++.....       .+..+++|+.|++++|..+....... ...+
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~  271 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-------EFFQLNYLQHLSLSRCYDIIPETLLE-LGEI  271 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-------GGGGCTTCCEEECTTCTTCCGGGGGG-GGGC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-------HHhCCCCCCEeeCCCCCCCCHHHHHH-HhcC
Confidence            9999886 4543212345678899999999998655432211       12334889999998887554332211 1468


Q ss_pred             CCcCEEeecCC
Q 045653          244 PTLQSLEATGC  254 (272)
Q Consensus       244 ~~L~~L~i~~c  254 (272)
                      ++|++|++++|
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            88888888887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.29  E-value=9e-11  Score=101.32  Aligned_cols=211  Identities=11%  Similarity=0.054  Sum_probs=124.4

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS   92 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~   92 (272)
                      +++..++ .+++.+   |.  +-.+++++|+++++ ++..++.....    .+++|++|+++++..++.++.+....   
T Consensus        12 ~~v~C~~-~~Lt~i---P~--~l~~~l~~L~Ls~N-~i~~i~~~~f~----~l~~L~~L~Ls~N~i~~~i~~~~f~~---   77 (350)
T 4ay9_X           12 RVFLCQE-SKVTEI---PS--DLPRNAIELRFVLT-KLRVIQKGAFS----GFGDLEKIEISQNDVLEVIEADVFSN---   77 (350)
T ss_dssp             TEEEEES-TTCCSC---CT--TCCTTCSEEEEESC-CCSEECTTSST----TCTTCCEEEEECCTTCCEECTTSBCS---
T ss_pred             CEEEecC-CCCCcc---Cc--CcCCCCCEEEccCC-cCCCcCHHHHc----CCCCCCEEECcCCCCCCccChhHhhc---
Confidence            4444443 356655   22  22478999999997 56666654433    58999999999987666665533221   


Q ss_pred             cccccccccccceeecceeeeccCCCCccccc-ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653           93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH  171 (272)
Q Consensus        93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~  171 (272)
                                .+.+. .+.+..+..+.   .+ +..+..+++|+.|++.++++..+.+.    .+....++..+.+.++.
T Consensus        78 ----------L~~l~-~~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~l~~l~l~~~~  139 (350)
T 4ay9_X           78 ----------LPKLH-EIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQKVLLDIQDNI  139 (350)
T ss_dssp             ----------CTTCC-EEEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSCCCC----TTCCBSSCEEEEEESCT
T ss_pred             ----------chhhh-hhhcccCCccc---ccCchhhhhccccccccccccccccCCch----hhcccchhhhhhhcccc
Confidence                      12222 23333444443   33 34567788999999988866653322    22244566667777666


Q ss_pred             CCccccchHHHhccc-cCcEEEeecCCCcceeeccCCc---------------cc--cCCccCCCccCeeeccccccccc
Q 045653          172 KLKYLFSASMIRSVE-QLQHLDICLCKGLLGIISEDTA---------------IQ--VTPCFVFPRVSTLRLIDLPKLRF  233 (272)
Q Consensus       172 ~l~~l~~~~~~~~l~-~L~~L~i~~c~~l~~~~~~~~~---------------~~--~~~~~~l~~L~~L~l~~c~~l~~  233 (272)
                      .+..+ +...+..+. .++.|+++++ +++.++.....               ..  ......+++|+.|++++. +++.
T Consensus       140 ~i~~l-~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~  216 (350)
T 4ay9_X          140 NIHTI-ERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHS  216 (350)
T ss_dssp             TCCEE-CTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCC
T ss_pred             ccccc-cccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCc
Confidence            66665 433333433 4566666653 35554421110               00  011234577888888775 6777


Q ss_pred             ccCCCccccCCCcCEEeecCCCCCccccc
Q 045653          234 FYPGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       234 ~~~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      ++..    .+..|++|.+.++.+++.+|.
T Consensus       217 lp~~----~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          217 LPSY----GLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             CCSS----SCTTCCEEECTTCTTCCCCCC
T ss_pred             cChh----hhccchHhhhccCCCcCcCCC
Confidence            7653    367788888888888887774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.28  E-value=9.1e-11  Score=98.72  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=126.9

Q ss_pred             ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeec
Q 045653           35 SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNL  114 (272)
Q Consensus        35 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~  114 (272)
                      .+++++++++.++ ++...+..       ..++++.|+++++ .+..++......             ++.|+ .+.+..
T Consensus         8 ~l~~l~~l~~~~~-~l~~ip~~-------~~~~l~~L~L~~N-~l~~~~~~~~~~-------------l~~L~-~L~L~~   64 (290)
T 1p9a_G            8 KVASHLEVNCDKR-NLTALPPD-------LPKDTTILHLSEN-LLYTFSLATLMP-------------YTRLT-QLNLDR   64 (290)
T ss_dssp             CSTTCCEEECTTS-CCSSCCSC-------CCTTCCEEECTTS-CCSEEEGGGGTT-------------CTTCC-EEECTT
T ss_pred             ccCCccEEECCCC-CCCcCCCC-------CCCCCCEEEcCCC-cCCccCHHHhhc-------------CCCCC-EEECCC
Confidence            4678888888875 45544432       2478999999986 355544322111             34444 555555


Q ss_pred             cCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEee
Q 045653          115 EDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDIC  194 (272)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  194 (272)
                      +.- .   .++. ...+++|+.|+++++++..+     |..+..+++|++|++.+ +.++.+ +...+..+++|+.|+++
T Consensus        65 n~l-~---~~~~-~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~l~~-N~l~~l-~~~~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           65 AEL-T---KLQV-DGTLPVLGTLDLSHNQLQSL-----PLLGQTLPALTVLDVSF-NRLTSL-PLGALRGLGELQELYLK  132 (290)
T ss_dssp             SCC-C---EEEC-CSCCTTCCEEECCSSCCSSC-----CCCTTTCTTCCEEECCS-SCCCCC-CSSTTTTCTTCCEEECT
T ss_pred             Ccc-C---cccC-CCCCCcCCEEECCCCcCCcC-----chhhccCCCCCEEECCC-CcCccc-CHHHHcCCCCCCEEECC
Confidence            432 1   2222 26789999999999977652     33456789999999998 466666 55667899999999999


Q ss_pred             cCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccccc
Q 045653          195 LCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSELS  265 (272)
Q Consensus       195 ~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~  265 (272)
                      ++ .++.++.  +.     ...+++|+.|+++++ +++.++.... ..+++|++|+++++ +++.+|.+..
T Consensus       133 ~N-~l~~~~~--~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~ip~~~~  192 (290)
T 1p9a_G          133 GN-ELKTLPP--GL-----LTPTPKLEKLSLANN-NLTELPAGLL-NGLENLDTLLLQEN-SLYTIPKGFF  192 (290)
T ss_dssp             TS-CCCCCCT--TT-----TTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CC-CCCccCh--hh-----cccccCCCEEECCCC-cCCccCHHHh-cCcCCCCEEECCCC-cCCccChhhc
Confidence            97 4665542  11     233589999999986 7888877542 46899999999987 5777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.28  E-value=1.6e-10  Score=108.22  Aligned_cols=121  Identities=16%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc-------hHHHhccccCcEEEeecCCC
Q 045653          126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS-------ASMIRSVEQLQHLDICLCKG  198 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-------~~~~~~l~~L~~L~i~~c~~  198 (272)
                      ..+..+++|+.|++++|++..+.+.    .+..+++|++|++.++ .++.+..       ...+.++++|+.|+++++ .
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~  547 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDD----MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-G  547 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-C
T ss_pred             cccccCCCCCEEECCCCCCCcCChh----hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-C
Confidence            3344555555555555544432222    2334555666655553 2332200       011345555666666554 3


Q ss_pred             cceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653          199 LLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       199 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      ++.++.       .....+++|+.|++++. +++.++.... ..+++|+.|+++++ +++.+++
T Consensus       548 l~~i~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~~~  601 (680)
T 1ziw_A          548 FDEIPV-------EVFKDLFELKIIDLGLN-NLNTLPASVF-NNQVSLKSLNLQKN-LITSVEK  601 (680)
T ss_dssp             CCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCBCCH
T ss_pred             CCCCCH-------HHcccccCcceeECCCC-CCCcCCHhHh-CCCCCCCEEECCCC-cCCccCh
Confidence            433321       11233577777777664 6666665432 46677888888776 5665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.28  E-value=2e-11  Score=113.61  Aligned_cols=222  Identities=15%  Similarity=0.119  Sum_probs=122.5

Q ss_pred             CCCCcceeeecccccccc------------------ccccccccc--ccCCccEEEEccCccceeecCCCccccceeccc
Q 045653            8 AFPLLESLTLHNLINLER------------------ICIDRLKVD--SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQ   67 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~------------------~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~   67 (272)
                      .+++|++|+++++. ++.                  +   +...+  .+++|++|++++|......+. ..+    .+++
T Consensus       204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~----~l~~  274 (636)
T 4eco_A          204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLK----ALPE  274 (636)
T ss_dssp             GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCSSCCT-TTT----TCSS
T ss_pred             cccCCCEEECcCCc-cccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCccChH-HHh----cCCC
Confidence            46789999999865 554                  3   45556  789999999999864443332 111    5889


Q ss_pred             cCeEEecCCCCccc--cccCccccccccccccccccccceeecceeeeccCCCCccccccc--ccCCCCCccEEEecccc
Q 045653           68 ISCLSLGNLPQLTS--FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFN--DKVRLPKLEALELHEIN  143 (272)
Q Consensus        68 L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~  143 (272)
                      |+.|+++++..++.  +|.......        .....+.|+ .+++..+.-.    .++.  .+..+++|+.|++.+|+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~--------~~~~l~~L~-~L~L~~n~l~----~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALA--------DAPVGEKIQ-IIYIGYNNLK----TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHH--------HSGGGGTCC-EEECCSSCCS----SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             CCEEECcCCCCCccccchHHHHhhh--------ccccCCCCC-EEECCCCcCC----ccCchhhhccCCCCCEEeCcCCc
Confidence            99999998764553  443221100        000012333 4445444321    3444  45666677777777765


Q ss_pred             ce-EeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcccc-CcEEEeecCCCcceeeccCCcccc----------
Q 045653          144 VE-KIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQ-LQHLDICLCKGLLGIISEDTAIQV----------  211 (272)
Q Consensus       144 l~-~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~-L~~L~i~~c~~l~~~~~~~~~~~~----------  211 (272)
                      +. .+     | .+..+++|++|++.++. +..+ |. .+..+++ |+.|+++++. ++.++..-.....          
T Consensus       342 l~g~i-----p-~~~~l~~L~~L~L~~N~-l~~l-p~-~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          342 LEGKL-----P-AFGSEIKLASLNLAYNQ-ITEI-PA-NFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             CEEEC-----C-CCEEEEEESEEECCSSE-EEEC-CT-TSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCS
T ss_pred             Cccch-----h-hhCCCCCCCEEECCCCc-cccc-cH-hhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcC
Confidence            55 31     1 23345666666666532 3333 32 3455555 6666666543 3333211000000          


Q ss_pred             --------CCcc-------CCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          212 --------TPCF-------VFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       212 --------~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                              ..+.       .+++|+.|+++++ .++.++... ...+++|++|+++++ +++.+|...
T Consensus       412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~  476 (636)
T 4eco_A          412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL-FSTGSPLSSINLMGN-MLTEIPKNS  476 (636)
T ss_dssp             SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH-HHTTCCCSEEECCSS-CCSBCCSSS
T ss_pred             CcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH-HccCCCCCEEECCCC-CCCCcCHHH
Confidence                    0011       3457888888775 566555532 135788888888877 455676644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.27  E-value=1.2e-10  Score=108.93  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCC----CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPA----KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~----~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      .+..+++|+.|++++|++..++....|.    .+..+++|++|++.++ .+..+ +...+.++++|+.|+++++ +++.+
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l  575 (680)
T 1ziw_A          499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEI-PVEVFKDLFELKIIDLGLN-NLNTL  575 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred             hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCC-CHHHcccccCcceeECCCC-CCCcC
Confidence            4677899999999999777655443322    3567899999999884 56666 6566788999999999875 56655


Q ss_pred             eccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCC
Q 045653          203 ISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNL  257 (272)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  257 (272)
                      +.  ..     ...+++|+.|+++++ +++.++.......+++|+.+++.++|-.
T Consensus       576 ~~--~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          576 PA--SV-----FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CT--TT-----TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CH--hH-----hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence            52  11     223589999999886 6776665432226789999999886643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.27  E-value=1.9e-10  Score=98.42  Aligned_cols=213  Identities=10%  Similarity=0.099  Sum_probs=110.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++. ++.+ . +...+.+++|++|+++++. +...+..       .+++|++|+++++ .+..++....
T Consensus        76 ~l~~L~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~l~~~-------~~~~L~~L~l~~n-~i~~~~~~~~  143 (332)
T 2ft3_A           76 GLQHLYALVLVNNK-ISKI-H-EKAFSPLRKLQKLYISKNH-LVEIPPN-------LPSSLVELRIHDN-RIRKVPKGVF  143 (332)
T ss_dssp             TCTTCCEEECCSSC-CCEE-C-GGGSTTCTTCCEEECCSSC-CCSCCSS-------CCTTCCEEECCSS-CCCCCCSGGG
T ss_pred             CCCCCcEEECCCCc-cCcc-C-HhHhhCcCCCCEEECCCCc-CCccCcc-------ccccCCEEECCCC-ccCccCHhHh
Confidence            56789999998863 4444 1 2345568899999998873 3333221       1356666666653 2333332111


Q ss_pred             cc--ccc-ccc-----c-----cccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCC
Q 045653           88 RH--SIS-SNT-----K-----DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPA  154 (272)
Q Consensus        88 ~~--~~~-~~~-----~-----~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~  154 (272)
                      ..  .+. +.+     .     ....... .++ .+++..+.-.    .++..  ..++|+.|++.++.+..+.+.    
T Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L~l~~n~l~----~l~~~--~~~~L~~L~l~~n~i~~~~~~----  211 (332)
T 2ft3_A          144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YLRISEAKLT----GIPKD--LPETLNELHLDHNKIQAIELE----  211 (332)
T ss_dssp             SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CCBCCSSBCS----SCCSS--SCSSCSCCBCCSSCCCCCCTT----
T ss_pred             CCCccCCEEECCCCccccCCCCcccccCC-ccC-EEECcCCCCC----ccCcc--ccCCCCEEECCCCcCCccCHH----
Confidence            10  000 000     0     0000000 222 2222222111    12221  125677777777755543222    


Q ss_pred             CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653          155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF  234 (272)
Q Consensus       155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  234 (272)
                      .+..+++|++|++.++ .+..+ +...+..+++|+.|++.++ .+..++  ..      ...+++|+.|+++++ .++.+
T Consensus       212 ~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~lp--~~------l~~l~~L~~L~l~~N-~l~~~  279 (332)
T 2ft3_A          212 DLLRYSKLYRLGLGHN-QIRMI-ENGSLSFLPTLRELHLDNN-KLSRVP--AG------LPDLKLLQVVYLHTN-NITKV  279 (332)
T ss_dssp             SSTTCTTCSCCBCCSS-CCCCC-CTTGGGGCTTCCEEECCSS-CCCBCC--TT------GGGCTTCCEEECCSS-CCCBC
T ss_pred             HhcCCCCCCEEECCCC-cCCcC-ChhHhhCCCCCCEEECCCC-cCeecC--hh------hhcCccCCEEECCCC-CCCcc
Confidence            3456777787777774 44555 4345667778888888776 455444  22      223477888888775 56666


Q ss_pred             cCCCccc-----cCCCcCEEeecCCCC
Q 045653          235 YPGMHTS-----EWPTLQSLEATGCDN  256 (272)
Q Consensus       235 ~~~~~~~-----~~~~L~~L~i~~c~~  256 (272)
                      +......     ..+.|+.|++.+++-
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             ChhHccccccccccccccceEeecCcc
Confidence            5533221     145677777777763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.26  E-value=5.3e-11  Score=108.95  Aligned_cols=115  Identities=15%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED  206 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  206 (272)
                      .+..+++|+.|++.+|.+..+.+.    .+..+++|++|++.+|.-....+| ..+..+++|+.|++++| .+..+.+ .
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n-~l~~~~~-~  488 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSP-T  488 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT-T
T ss_pred             hhhcCCCCCEEeCcCCcccccchh----hhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCC-ccccCCh-h
Confidence            346677888888888866654332    455678888888887653312213 34667788888888877 3555432 1


Q ss_pred             CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653          207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~  256 (272)
                            ....+++|+.|+++++ .++.++.... ..+++|++|++++++-
T Consensus       489 ------~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          489 ------AFNSLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             ------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred             ------hhhcccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCcc
Confidence                  1233588889998886 6666655322 5788888898888653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.26  E-value=5.6e-11  Score=94.17  Aligned_cols=109  Identities=19%  Similarity=0.257  Sum_probs=80.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|++....+.    .+..+++|++|++.++. +... ....+..+++|++|++++|..+..++    
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~----  153 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSA-HDDS-ILTKINTLPKVNSIDLSYNGAITDIM----  153 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSB-CBGG-GHHHHTTCSSCCEEECCSCTBCCCCG----
T ss_pred             hhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCc-cCcH-hHHHHhhCCCCCEEEccCCCCccccH----
Confidence            35689999999999976642222    45678999999999854 4543 23567889999999999986565553    


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                           ....+++|+.|+++++ .+++++ ..  ..+++|++|++++.+
T Consensus       154 -----~l~~l~~L~~L~l~~n-~i~~~~-~l--~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          154 -----PLKTLPELKSLNIQFD-GVHDYR-GI--EDFPKLNQLYAFSQT  192 (197)
T ss_dssp             -----GGGGCSSCCEEECTTB-CCCCCT-TG--GGCSSCCEEEECBC-
T ss_pred             -----hhcCCCCCCEEECCCC-CCcChH-Hh--ccCCCCCEEEeeCcc
Confidence                 1234599999999987 576665 33  678999999998764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=3.3e-10  Score=108.56  Aligned_cols=184  Identities=10%  Similarity=0.120  Sum_probs=90.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCcccee--ecCCCcccc-ce-eccccCeEEecCCCCccccc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFA--IGGEADVVT-EG-IFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~-~~-~l~~L~~L~l~~c~~l~~~~   83 (272)
                      .+++|++|.|+++.....+   +...+.+++|+.|+++++..+..  .+....... .. .+++|+.|+++++ .+..+|
T Consensus       489 ~L~~L~~L~Ls~N~l~~~i---P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip  564 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQL---PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFP  564 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSC---CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCC
T ss_pred             cCCCCCEEECcCCCCCccC---hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccC
Confidence            5789999999987655555   45566789999999999863432  111000000 00 2346666666654 233443


Q ss_pred             c--Cccc-cccc-ccc-----c-cccccccceeecceeeeccCCCCcccccccccCCCCC-ccEEEeccccceEeccC--
Q 045653           84 R--EVKR-HSIS-SNT-----K-DSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPK-LEALELHEINVEKIWRS--  150 (272)
Q Consensus        84 ~--~~~~-~~~~-~~~-----~-~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~l~~i~~~--  150 (272)
                      .  .... ..+. +.+     . ......++.|+ .+++..+.-.    .++..+..+++ |+.|++.+|++..+...  
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~-~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~  639 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT-DLKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN  639 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEES-EEECCSSCCS----CCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred             ChhhhhcCCCCCEEECCCCCcccchhhcCCCcce-EEECcCCccc----cchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence            3  1110 0111 000     0 00111123333 4444433211    33444455555 66666665533321100  


Q ss_pred             -------------------CCC---CCCC--CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653          151 -------------------QVP---AKFP--RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII  203 (272)
Q Consensus       151 -------------------~~~---~~~~--~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~  203 (272)
                                         .+|   ..+.  .+++|++|++.++ .+..+ |......+++|+.|+++++ .+..++
T Consensus       640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N-~L~~ip  713 (876)
T 4ecn_A          640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN-LMTSIP  713 (876)
T ss_dssp             TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC-CCSCCC
T ss_pred             ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC-cCCccC
Confidence                               001   0011  2347778887774 34455 6556667888888888876 455444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.25  E-value=5.3e-11  Score=110.84  Aligned_cols=120  Identities=16%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             CCCCccEEEeccccceEeccCCCCC---CCCCCCCcCEEEEecCcCCccccchHHH-hccccCcEEEeecCCCcceeecc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPA---KFPRFQSLTRLVVSNCHKLKYLFSASMI-RSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~---~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      .+++|+.|++.+|++..+.......   ....+++|++|++.++ .++.+ |.... ..+++|+.|+++++ .++.++  
T Consensus       455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~ip--  529 (636)
T 4eco_A          455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL-SDDFRATTLPYLVGIDLSYN-SFSKFP--  529 (636)
T ss_dssp             TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBC-CGGGSTTTCTTCCEEECCSS-CCSSCC--
T ss_pred             cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCCcc-ChhhhhccCCCcCEEECCCC-CCCCcC--
Confidence            4677777777777555432221100   0112337888888774 44555 43222 37788888888876 354443  


Q ss_pred             CCccccCCccCCCccCeeecccc------cccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDL------PKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c------~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      ..      +..+++|+.|+++++      .-...++...  ..+++|++|+++++. ++.+|..
T Consensus       530 ~~------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~-l~~ip~~  584 (636)
T 4eco_A          530 TQ------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSND-IRKVNEK  584 (636)
T ss_dssp             CG------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSC
T ss_pred             hh------hhcCCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCc-CCccCHh
Confidence            22      233588888888543      2344555555  678889999998885 4777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.23  E-value=2.5e-10  Score=95.10  Aligned_cols=189  Identities=15%  Similarity=0.182  Sum_probs=125.4

Q ss_pred             cCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeecc
Q 045653           36 FNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLE  115 (272)
Q Consensus        36 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~  115 (272)
                      .++|++|+++++ ++.........    .+++|+.|+++++ .++.++......             .++|+ .+++..+
T Consensus        27 ~~~l~~L~ls~n-~l~~~~~~~~~----~l~~L~~L~l~~n-~l~~~~~~~~~~-------------l~~L~-~L~L~~n   86 (276)
T 2z62_A           27 PFSTKNLDLSFN-PLRHLGSYSFF----SFPELQVLDLSRC-EIQTIEDGAYQS-------------LSHLS-TLILTGN   86 (276)
T ss_dssp             CTTCCEEECTTC-CCCEECTTTTT----TCTTCSEEECTTC-CCCEECTTTTTT-------------CTTCC-EEECTTC
T ss_pred             CCCccEEECCCC-cccccCHhHhc----cccCCcEEECCCC-cCCccCHHHccC-------------CcCCC-EEECCCC
Confidence            367999999998 45555442222    5899999999987 565555432221             34455 6666554


Q ss_pred             CCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeec
Q 045653          116 DKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICL  195 (272)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  195 (272)
                      .-..   ..+..+..+++|+.|++.++++..+.+.    .+..+++|++|++.++. +..+..+..+..+++|++|++++
T Consensus        87 ~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~  158 (276)
T 2z62_A           87 PIQS---LALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS  158 (276)
T ss_dssp             CCCE---ECTTTTTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred             ccCc---cChhhhcCCccccEEECCCCCccccCch----hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCC
Confidence            3221   1234567889999999999977764332    35578999999999854 44431134678899999999999


Q ss_pred             CCCcceeeccCCccccCCccCCCccC----eeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          196 CKGLLGIISEDTAIQVTPCFVFPRVS----TLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       196 c~~l~~~~~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                      + .++.++... .      ..+++|+    .|+++++ .++.++...  ....+|++|+++++. ++.+|...
T Consensus       159 N-~l~~~~~~~-~------~~l~~L~~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~  219 (276)
T 2z62_A          159 N-KIQSIYCTD-L------RVLHQMPLLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGI  219 (276)
T ss_dssp             S-CCCEECGGG-G------HHHHTCTTCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSC-CSCCCTTT
T ss_pred             C-CCCcCCHHH-h------hhhhhccccceeeecCCC-cccccCccc--cCCCcccEEECCCCc-eeecCHhH
Confidence            7 466654211 1      1124444    7888875 677777655  345589999999885 77776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.23  E-value=1.1e-11  Score=105.42  Aligned_cols=120  Identities=19%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             cccCCCCCccEEEeccccceEe--ccCCCCCCCCCCCCcCEEEEecCcCCccc--cchHHHhccccCcEEEeecCCCcce
Q 045653          126 NDKVRLPKLEALELHEINVEKI--WRSQVPAKFPRFQSLTRLVVSNCHKLKYL--FSASMIRSVEQLQHLDICLCKGLLG  201 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~~i--~~~~~~~~~~~l~~L~~L~i~~c~~l~~l--~~~~~~~~l~~L~~L~i~~c~~l~~  201 (272)
                      ..+..+++|+.|++++|++...  .+...  .+..+++|++|++.++ .+..+  .+.....++++|+.|+++++. +..
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~  242 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISAL--CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRD  242 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHS--CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCS
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHH--HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCc
Confidence            3456677777887777753221  00000  1245677777777774 34422  022334466777777777753 433


Q ss_pred             eeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          202 IISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      ......      ...+++|+.|+++++ +++.++...  .  ++|++|+++++ +++.+|
T Consensus       243 ~~~~~~------~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N-~l~~~p  290 (312)
T 1wwl_A          243 AAGAPS------CDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYN-RLDRNP  290 (312)
T ss_dssp             SCCCSC------CCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSS-CCCSCC
T ss_pred             ccchhh------hhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCC-CCCCCh
Confidence            321111      122367777777765 555555543  1  66777777765 455554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.23  E-value=8e-10  Score=94.37  Aligned_cols=214  Identities=11%  Similarity=0.114  Sum_probs=128.9

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++ .++.+.  +.....+++|++|+++++. +...+..       .+++|+.|+++++ .+..++....
T Consensus        74 ~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~l~~~-------~~~~L~~L~l~~n-~l~~~~~~~~  141 (330)
T 1xku_A           74 NLKNLHTLILINN-KISKIS--PGAFAPLVKLERLYLSKNQ-LKELPEK-------MPKTLQELRVHEN-EITKVRKSVF  141 (330)
T ss_dssp             TCTTCCEEECCSS-CCCCBC--TTTTTTCTTCCEEECCSSC-CSBCCSS-------CCTTCCEEECCSS-CCCBBCHHHH
T ss_pred             cCCCCCEEECCCC-cCCeeC--HHHhcCCCCCCEEECCCCc-CCccChh-------hcccccEEECCCC-cccccCHhHh
Confidence            5688999999885 344431  2345568899999999873 3333221       1356666666553 2222221100


Q ss_pred             c--cccc-cc-----c-----ccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCC
Q 045653           88 R--HSIS-SN-----T-----KDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPA  154 (272)
Q Consensus        88 ~--~~~~-~~-----~-----~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~  154 (272)
                      .  ..+. +.     +     ........+.|+ .+.+..+.-.    .++..  ..++|+.|++.+|++..+.+.    
T Consensus       142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~----~l~~~--~~~~L~~L~l~~n~l~~~~~~----  210 (330)
T 1xku_A          142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT----TIPQG--LPPSLTELHLDGNKITKVDAA----  210 (330)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC----SCCSS--CCTTCSEEECTTSCCCEECTG----
T ss_pred             cCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCccc----cCCcc--ccccCCEEECCCCcCCccCHH----
Confidence            0  0000 00     0     000112234455 5555554322    23332  238999999999988775433    


Q ss_pred             CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653          155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF  234 (272)
Q Consensus       155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  234 (272)
                      .+..+++|++|++.++ .+..+ +...+..+++|++|+++++ .+..++  ..      +..+++|+.|+++++ .++.+
T Consensus       211 ~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~lp--~~------l~~l~~L~~L~l~~N-~i~~~  278 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNN-KLVKVP--GG------LADHKYIQVVYLHNN-NISAI  278 (330)
T ss_dssp             GGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSS-CCSSCC--TT------TTTCSSCCEEECCSS-CCCCC
T ss_pred             HhcCCCCCCEEECCCC-cCcee-ChhhccCCCCCCEEECCCC-cCccCC--hh------hccCCCcCEEECCCC-cCCcc
Confidence            3557899999999985 45665 4456788999999999997 466554  22      233589999999886 67777


Q ss_pred             cCCCcc-----ccCCCcCEEeecCCCC
Q 045653          235 YPGMHT-----SEWPTLQSLEATGCDN  256 (272)
Q Consensus       235 ~~~~~~-----~~~~~L~~L~i~~c~~  256 (272)
                      +...+.     ...+.++.+++.+.+-
T Consensus       279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          279 GSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ChhhcCCcccccccccccceEeecCcc
Confidence            654321     1247788999988764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.22  E-value=2.8e-10  Score=93.53  Aligned_cols=177  Identities=16%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcccc
Q 045653           10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRH   89 (272)
Q Consensus        10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~   89 (272)
                      ++.+++++++ .+++.+   +..  ..++|+.|++.++. +.........    .+++|+.|+++++ .++.++.     
T Consensus        14 ~~~~~l~~~~-~~l~~~---p~~--~~~~l~~L~L~~n~-l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~~-----   76 (251)
T 3m19_A           14 EGKKEVDCQG-KSLDSV---PSG--IPADTEKLDLQSTG-LATLSDATFR----GLTKLTWLNLDYN-QLQTLSA-----   76 (251)
T ss_dssp             GGGTEEECTT-CCCSSC---CSC--CCTTCCEEECTTSC-CCCCCTTTTT----TCTTCCEEECTTS-CCCCCCT-----
T ss_pred             CCCeEEecCC-CCcccc---CCC--CCCCCCEEEccCCC-cCccCHhHhc----CcccCCEEECCCC-cCCccCH-----
Confidence            3456677665 344444   111  23678888888873 3333322222    4788888888874 3433222     


Q ss_pred             ccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653           90 SISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN  169 (272)
Q Consensus        90 ~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~  169 (272)
                                                          ..+..+++|+.|++.++++..+.+.    .+..+++|++|++.+
T Consensus        77 ------------------------------------~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~  116 (251)
T 3m19_A           77 ------------------------------------GVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGG  116 (251)
T ss_dssp             ------------------------------------TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCS
T ss_pred             ------------------------------------hHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCC
Confidence                                                1124456666666666655543222    344566666666666


Q ss_pred             CcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEE
Q 045653          170 CHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSL  249 (272)
Q Consensus       170 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  249 (272)
                      + .++.+ +...+..+++|+.|+++++ .+..++.  .     ....+++|+.|+++++ .++.++.... ..+++|++|
T Consensus       117 N-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~-----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L  184 (251)
T 3m19_A          117 N-QLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPA--G-----AFDKLTNLQTLSLSTN-QLQSVPHGAF-DRLGKLQTI  184 (251)
T ss_dssp             S-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T-----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEE
T ss_pred             C-cCCCc-ChhHhccCCcccEEECcCC-cCCccCH--H-----HcCcCcCCCEEECCCC-cCCccCHHHH-hCCCCCCEE
Confidence            3 44444 4344456666666666665 3444331  0     1222466666666664 4555544221 355666666


Q ss_pred             eecCCC
Q 045653          250 EATGCD  255 (272)
Q Consensus       250 ~i~~c~  255 (272)
                      ++.+++
T Consensus       185 ~l~~N~  190 (251)
T 3m19_A          185 TLFGNQ  190 (251)
T ss_dssp             ECCSCC
T ss_pred             EeeCCc
Confidence            666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.21  E-value=1e-10  Score=107.04  Aligned_cols=119  Identities=18%  Similarity=0.218  Sum_probs=81.7

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc--eeecc
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL--GIISE  205 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~--~~~~~  205 (272)
                      +..+++|+.|++.+|.+..+.+.   ..+..+++|++|++.+|. +... .+..+.++++|+.|++.+|. +.  .++  
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p--  463 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLP--  463 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTS---CTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEEC--
T ss_pred             ccccCCCCEEEccCCccccccch---hhhhcCCCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCc-Cccccch--
Confidence            45677888888887766543221   135578889999998864 3444 33456788899999998874 32  222  


Q ss_pred             CCccccCCccCCCccCeeecccccccccc-cCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFF-YPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                      .      ....+++|+.|+++++ +++.+ +..+  ..+++|++|++++| +++.++++.
T Consensus       464 ~------~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~  513 (570)
T 2z63_A          464 D------IFTELRNLTFLDLSQC-QLEQLSPTAF--NSLSSLQVLNMASN-QLKSVPDGI  513 (570)
T ss_dssp             S------CCTTCTTCCEEECTTS-CCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             h------hhhcccCCCEEECCCC-ccccCChhhh--hcccCCCEEeCCCC-cCCCCCHHH
Confidence            2      2334599999999997 56666 4444  67899999999998 577666543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.20  E-value=1.3e-10  Score=106.02  Aligned_cols=212  Identities=17%  Similarity=0.211  Sum_probs=116.1

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|...+++|++|+++++. ++.+.  +.....+++|++|+++++ .+.........    .+++|+.|+++++ .++.++
T Consensus        20 ip~~~~~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~----~l~~L~~L~Ls~n-~l~~~~   90 (549)
T 2z81_A           20 IPSGLTAAMKSLDLSFNK-ITYIG--HGDLRACANLQVLILKSS-RINTIEGDAFY----SLGSLEHLDLSDN-HLSSLS   90 (549)
T ss_dssp             CCSCCCTTCCEEECCSSC-CCEEC--SSTTSSCTTCCEEECTTS-CCCEECTTTTT----TCTTCCEEECTTS-CCCSCC
T ss_pred             ccccCCCCccEEECcCCc-cCccC--hhhhhcCCcccEEECCCC-CcCccChhhcc----ccccCCEEECCCC-ccCccC
Confidence            455566788888888854 54441  234556888888888887 44444433222    4788888888875 444443


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCc
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSL  162 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L  162 (272)
                      +.....             +++|+ .+++..+.-..  ...+..+..+++|+.|++.+|+ +..+.+.    .+..+++|
T Consensus        91 ~~~~~~-------------l~~L~-~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l~~L  150 (549)
T 2z81_A           91 SSWFGP-------------LSSLK-YLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRI----DFAGLTSL  150 (549)
T ss_dssp             HHHHTT-------------CTTCC-EEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTCCEE
T ss_pred             HHHhcc-------------CCCCc-EEECCCCcccc--cchhhhhhccCCccEEECCCCccccccCHh----hhhccccc
Confidence            321111             23333 44444433211  0122344566677777777663 4443222    34456777


Q ss_pred             CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC--CCcc
Q 045653          163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP--GMHT  240 (272)
Q Consensus       163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~  240 (272)
                      ++|++.++. +... .+..+..+++|++|++.++. +..++  ...     ...+++|+.|+++++ .++....  ....
T Consensus       151 ~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~--~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~  219 (549)
T 2z81_A          151 NELEIKALS-LRNY-QSQSLKSIRDIHHLTLHLSE-SAFLL--EIF-----ADILSSVRYLELRDT-NLARFQFSPLPVD  219 (549)
T ss_dssp             EEEEEEETT-CCEE-CTTTTTTCSEEEEEEEECSB-STTHH--HHH-----HHSTTTBSEEEEESC-BCTTCCCCCCSSC
T ss_pred             CeeeccCCc-cccc-ChhhhhccccCceEecccCc-ccccc--hhh-----HhhcccccEEEccCC-ccccccccccchh
Confidence            777776643 3333 22345566677777766643 22111  000     122578888888875 4444321  1112


Q ss_pred             ccCCCcCEEeecCCC
Q 045653          241 SEWPTLQSLEATGCD  255 (272)
Q Consensus       241 ~~~~~L~~L~i~~c~  255 (272)
                      ..+++|++|++.++.
T Consensus       220 ~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          220 EVSSPMKKLAFRGSV  234 (549)
T ss_dssp             CCCCCCCEEEEESCE
T ss_pred             hhhhcccceeccccc
Confidence            456788888888773

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=1.4e-10  Score=96.61  Aligned_cols=193  Identities=15%  Similarity=0.150  Sum_probs=129.3

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      .+++|++|.+.++. ++.+    .....+++|++|++.++. +....       .+ .+++|+.|+++++ .++.++...
T Consensus        39 ~l~~L~~L~l~~~~-i~~~----~~l~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~~~  104 (272)
T 3rfs_A           39 ELNSIDQIIANNSD-IKSV----QGIQYLPNVRYLALGGNK-LHDIS-------ALKELTNLTYLILTGN-QLQSLPNGV  104 (272)
T ss_dssp             HHTTCCEEECTTSC-CCCC----TTGGGCTTCCEEECTTSC-CCCCG-------GGTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             cccceeeeeeCCCC-cccc----cccccCCCCcEEECCCCC-CCCch-------hhcCCCCCCEEECCCC-ccCccChhH
Confidence            45789999998853 4444    345678999999999984 33321       22 5899999999986 555555432


Q ss_pred             cccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEE
Q 045653           87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLV  166 (272)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~  166 (272)
                      ...             ++.|+ .+++..+.-..   ..+..+..+++|+.|++.+|++..+.+.    .+..+++|++|+
T Consensus       105 ~~~-------------l~~L~-~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~  163 (272)
T 3rfs_A          105 FDK-------------LTNLK-ELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTNLTELD  163 (272)
T ss_dssp             TTT-------------CTTCC-EEECTTSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEE
T ss_pred             hcC-------------CcCCC-EEECCCCcCCc---cCHHHhccCCCCCEEECCCCccCccCHH----HhccCccCCEEE
Confidence            211             34455 66666654322   1223357889999999999977764332    356789999999


Q ss_pred             EecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCc
Q 045653          167 VSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTL  246 (272)
Q Consensus       167 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L  246 (272)
                      +.++ .++.+ +...+..+++|+.|++.++ .+..++.  .     ....+++|+.|++.+++-.         ..++.|
T Consensus       164 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~~~---------~~~~~l  224 (272)
T 3rfs_A          164 LSYN-QLQSL-PEGVFDKLTQLKDLRLYQN-QLKSVPD--G-----VFDRLTSLQYIWLHDNPWD---------CTCPGI  224 (272)
T ss_dssp             CCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCT--T-----TTTTCTTCCEEECCSSCBC---------CCTTTT
T ss_pred             CCCC-CcCcc-CHHHhcCCccCCEEECCCC-cCCccCH--H-----HHhCCcCCCEEEccCCCcc---------ccCcHH
Confidence            9996 56666 5556788999999999997 4655542  1     1234599999999886422         245566


Q ss_pred             CEEeecCC
Q 045653          247 QSLEATGC  254 (272)
Q Consensus       247 ~~L~i~~c  254 (272)
                      +.+++..+
T Consensus       225 ~~l~~~~n  232 (272)
T 3rfs_A          225 RYLSEWIN  232 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.18  E-value=2.6e-10  Score=109.24  Aligned_cols=121  Identities=15%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             CCCCccEEEeccccceEeccCCCC---CCCCCCCCcCEEEEecCcCCccccchHHH-hccccCcEEEeecCCCcceeecc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVP---AKFPRFQSLTRLVVSNCHKLKYLFSASMI-RSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~---~~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      .+++|+.|++++|++..+......   +...++++|++|++.+| .+..+ |.... ..+++|+.|+++++ .+..++  
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~lp--  769 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSSFP--  769 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSSCC--
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCccc--
Confidence            577888888888866653222111   01223458999999886 55565 53322 37899999999886 455543  


Q ss_pred             CCccccCCccCCCccCeeeccccc------ccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLP------KLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                      ..      ...+++|+.|++++++      -...++..+  ..+++|+.|++++|. ++.+|...
T Consensus       770 ~~------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l  825 (876)
T 4ecn_A          770 TQ------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKL  825 (876)
T ss_dssp             CG------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCC
T ss_pred             hh------hhcCCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhh
Confidence            22      2345999999997633      344455555  679999999999985 58787764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=1.1e-10  Score=92.35  Aligned_cols=87  Identities=13%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653          125 FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS  204 (272)
Q Consensus       125 ~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  204 (272)
                      +..+..+++|+.|++++|++....+.    .+..+++|++|++.+|..+.++ +  .+..+++|+.|++++|. ++.+. 
T Consensus       105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~~~-~--~l~~l~~L~~L~l~~n~-i~~~~-  175 (197)
T 4ezg_A          105 IPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAITDI-M--PLKTLPELKSLNIQFDG-VHDYR-  175 (197)
T ss_dssp             SCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCCCC-G--GGGGCSSCCEEECTTBC-CCCCT-
T ss_pred             ChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcccc-H--hhcCCCCCCEEECCCCC-CcChH-
Confidence            44457789999999999976642222    3457899999999998877777 4  57889999999999873 54432 


Q ss_pred             cCCccccCCccCCCccCeeecccc
Q 045653          205 EDTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                              ....+++|+.|++.+.
T Consensus       176 --------~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          176 --------GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             --------TGGGCSSCCEEEECBC
T ss_pred             --------HhccCCCCCEEEeeCc
Confidence                    2344699999999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.17  E-value=1.6e-10  Score=97.30  Aligned_cols=102  Identities=18%  Similarity=0.240  Sum_probs=51.6

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ..+++|+.|++.+|++..+ +     .+..+++|++|++.++ .+..+   ..+..+++|+.|++++| .+..+..    
T Consensus       109 ~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N-~l~~~~~----  173 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP----  173 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG----
T ss_pred             ccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCC-ccccchh----
Confidence            4456666666666644442 1     1334566666666653 33333   23455666666666654 2333321    


Q ss_pred             cccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                           ...+++|+.|+++++ .+++++. .  ..+++|+.|+++++
T Consensus       174 -----l~~l~~L~~L~L~~N-~i~~l~~-l--~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          174 -----LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQ  210 (291)
T ss_dssp             -----GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEEE
T ss_pred             -----hcCCCccCEEECCCC-cCCCChh-h--ccCCCCCEEECcCC
Confidence                 122356666666554 4444432 2  35566666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.17  E-value=4.6e-10  Score=100.41  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=33.1

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLT   80 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~   80 (272)
                      ..+++|++|+++++ .++.+     +.+.+++|++|++.++. +...+.   +    .+++|+.|+++++..+.
T Consensus       103 ~~l~~L~~L~L~~N-~l~~l-----~~~~l~~L~~L~l~~N~-l~~l~l---~----~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A          103 TPLTKLTYLNCDTN-KLTKL-----DVSQNPLLTYLNCARNT-LTEIDV---S----HNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             TTCTTCCEEECCSS-CCSCC-----CCTTCTTCCEEECTTSC-CSCCCC---T----TCTTCCEEECTTCSCCC
T ss_pred             CCCCcCCEEECCCC-cCCee-----cCCCCCcCCEEECCCCc-cceecc---c----cCCcCCEEECCCCCccc
Confidence            45677888888775 34433     14456777777777662 332211   0    34555555555554333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.17  E-value=6.8e-10  Score=99.32  Aligned_cols=156  Identities=16%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             CCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccC
Q 045653            6 CDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCRE   85 (272)
Q Consensus         6 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~   85 (272)
                      -..+++|++|+++++. ++.+     +.+.+++|++|+++++ .+...+   .+    .+++|+.|+++++ .++.++.+
T Consensus        81 ~~~l~~L~~L~Ls~N~-l~~~-----~~~~l~~L~~L~L~~N-~l~~l~---~~----~l~~L~~L~l~~N-~l~~l~l~  145 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNK-LTNL-----DVTPLTKLTYLNCDTN-KLTKLD---VS----QNPLLTYLNCARN-TLTEIDVS  145 (457)
T ss_dssp             CTTCTTCSEEECCSSC-CSCC-----CCTTCTTCCEEECCSS-CCSCCC---CT----TCTTCCEEECTTS-CCSCCCCT
T ss_pred             cccCCCCCEEECcCCC-Ccee-----ecCCCCcCCEEECCCC-cCCeec---CC----CCCcCCEEECCCC-ccceeccc
Confidence            4567899999999853 4444     2567899999999998 444432   11    5899999999875 44444321


Q ss_pred             ccccccc-c----c--cccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCC
Q 045653           86 VKRHSIS-S----N--TKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPR  158 (272)
Q Consensus        86 ~~~~~~~-~----~--~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~  158 (272)
                      .. ..+. +    +  +........+.|+ .+++..+.- .   .++  +..+++|+.|++.+|++..+       .+..
T Consensus       146 ~l-~~L~~L~l~~n~~~~~~~~~~l~~L~-~L~ls~n~l-~---~l~--l~~l~~L~~L~l~~N~l~~~-------~l~~  210 (457)
T 3bz5_A          146 HN-TQLTELDCHLNKKITKLDVTPQTQLT-TLDCSFNKI-T---ELD--VSQNKLLNRLNCDTNNITKL-------DLNQ  210 (457)
T ss_dssp             TC-TTCCEEECTTCSCCCCCCCTTCTTCC-EEECCSSCC-C---CCC--CTTCTTCCEEECCSSCCSCC-------CCTT
T ss_pred             cC-CcCCEEECCCCCcccccccccCCcCC-EEECCCCcc-c---eec--cccCCCCCEEECcCCcCCee-------cccc
Confidence            11 0111 0    0  0000111223333 444433321 1   111  34556666666666655442       1335


Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +++|++|+++++ .++.+ |   +..+++|+.|++.++
T Consensus       211 l~~L~~L~Ls~N-~l~~i-p---~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          211 NIQLTFLDCSSN-KLTEI-D---VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CTTCSEEECCSS-CCSCC-C---CTTCTTCSEEECCSS
T ss_pred             CCCCCEEECcCC-ccccc-C---ccccCCCCEEEeeCC
Confidence            677777777663 34444 3   456677777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=5.3e-10  Score=100.14  Aligned_cols=206  Identities=17%  Similarity=0.174  Sum_probs=106.2

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ..+++|++|+++++. ++.+    .....+++|++|++.+|. +.....  .+    .+++|+.|+++++ .++.++...
T Consensus       174 ~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~~--~~----~l~~L~~L~l~~n-~l~~~~~l~  240 (466)
T 1o6v_A          174 ANLTTLERLDISSNK-VSDI----SVLAKLTNLESLIATNNQ-ISDITP--LG----ILTNLDELSLNGN-QLKDIGTLA  240 (466)
T ss_dssp             TTCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCGG--GG----GCTTCCEEECCSS-CCCCCGGGG
T ss_pred             ccCCCCCEEECcCCc-CCCC----hhhccCCCCCEEEecCCc-cccccc--cc----ccCCCCEEECCCC-Ccccchhhh
Confidence            356889999998864 4443    334567888888888874 222211  11    4667777777665 233321100


Q ss_pred             cccccc-ccc-----cc-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653           87 KRHSIS-SNT-----KD-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF  159 (272)
Q Consensus        87 ~~~~~~-~~~-----~~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l  159 (272)
                      ....+. +.+     .. .....++.|+ .+++..+.-..    ++. +..+++|+.|++.+|++..+.+      +..+
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~-~L~l~~n~l~~----~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l  308 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAPLSGLTKLT-ELKLGANQISN----ISP-LAGLTALTNLELNENQLEDISP------ISNL  308 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGTTCTTCS-EEECCSSCCCC----CGG-GTTCTTCSEEECCSSCCSCCGG------GGGC
T ss_pred             cCCCCCEEECCCCccccchhhhcCCCCC-EEECCCCccCc----ccc-ccCCCccCeEEcCCCcccCchh------hcCC
Confidence            000000 000     00 0001122333 34443332111    111 3455666666666665444211      2356


Q ss_pred             CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653          160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH  239 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  239 (272)
                      ++|++|++.+| .+..+ +  .+..+++|+.|++.+| .+..+.         ....+++|+.|+++++ .++.... . 
T Consensus       309 ~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n-~l~~~~~-~-  371 (466)
T 1o6v_A          309 KNLTYLTLYFN-NISDI-S--PVSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP-L-  371 (466)
T ss_dssp             TTCSEEECCSS-CCSCC-G--GGGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCBCGG-G-
T ss_pred             CCCCEEECcCC-cCCCc-h--hhccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeCCCC-ccCccch-h-
Confidence            66777777665 34444 2  1456677777777665 343331         1234588888888877 4444443 2 


Q ss_pred             cccCCCcCEEeecCCC
Q 045653          240 TSEWPTLQSLEATGCD  255 (272)
Q Consensus       240 ~~~~~~L~~L~i~~c~  255 (272)
                       ..+++|+.|++.+|+
T Consensus       372 -~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          372 -ANLTRITQLGLNDQA  386 (466)
T ss_dssp             -TTCTTCCEEECCCEE
T ss_pred             -hcCCCCCEEeccCCc
Confidence             578888888888774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.16  E-value=2.6e-09  Score=102.57  Aligned_cols=163  Identities=14%  Similarity=0.192  Sum_probs=102.2

Q ss_pred             CCCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            3 KVPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         3 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .+|. ..++|++|+|+++ .++.+.  +.....+++|+.|++++|.....+......    .+++|+.|+++++ .+..+
T Consensus        18 ~vP~-lp~~l~~LdLs~N-~i~~i~--~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~----~L~~L~~L~Ls~N-~l~~~   88 (844)
T 3j0a_A           18 QVPQ-VLNTTERLLLSFN-YIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFR----NLPNLRILDLGSS-KIYFL   88 (844)
T ss_dssp             CCCS-SCTTCCEEEEESC-CCCEEC--SSSCSSCCSCSEEEECTTCCCCEECTTTTS----SCTTCCEEECTTC-CCCEE
T ss_pred             CCCC-CCCCcCEEECCCC-cCCccC--hhHCcccccCeEEeCCCCCCccccCHHHhc----CCCCCCEEECCCC-cCccc
Confidence            3565 6688999999985 345441  345567999999999999665555443333    5899999999986 44444


Q ss_pred             ccCccccccccccccccccccceeecceeeeccCCCCccccccc--ccCCCCCccEEEeccccceEeccCCCCCCCCCCC
Q 045653           83 CREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFN--DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQ  160 (272)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~  160 (272)
                      .+.....             .+.|+ .+++..+.-..   .++.  .+..+++|+.|++++|.+..+.+   +..+..++
T Consensus        89 ~p~~~~~-------------l~~L~-~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~  148 (844)
T 3j0a_A           89 HPDAFQG-------------LFHLF-ELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLN  148 (844)
T ss_dssp             CTTSSCS-------------CSSCC-CEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCS
T ss_pred             CHhHccC-------------CcccC-EeeCcCCCCCc---ccccCccccccCCCCEEECCCCccccccc---chhHhhCC
Confidence            3322221             44555 66666654332   1222  26778899999999886655321   12455788


Q ss_pred             CcCEEEEecCcCCccccchHHHhcc--ccCcEEEeecC
Q 045653          161 SLTRLVVSNCHKLKYLFSASMIRSV--EQLQHLDICLC  196 (272)
Q Consensus       161 ~L~~L~i~~c~~l~~l~~~~~~~~l--~~L~~L~i~~c  196 (272)
                      +|++|++.++ .+..+ ....+..+  ++|+.|++.++
T Consensus       149 ~L~~L~Ls~N-~i~~~-~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          149 SLKSIDFSSN-QIFLV-CEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             SCCEEEEESS-CCCCC-CSGGGHHHHHCSSCCCEECCS
T ss_pred             CCCEEECCCC-cCCee-CHHHcccccCCccceEECCCC
Confidence            9999998874 33333 22233444  56666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.15  E-value=1.3e-10  Score=105.34  Aligned_cols=37  Identities=14%  Similarity=0.148  Sum_probs=19.4

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +++|+.|+++++ +++.++... ...+++|++|++++++
T Consensus       443 l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          443 LEALQELNVASN-QLKSVPDGI-FDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCC-cCCccCHHH-hccCCcccEEECcCCC
Confidence            355666666554 455554431 1345556666665554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.15  E-value=9.2e-10  Score=101.95  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=45.7

Q ss_pred             CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653          160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH  239 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  239 (272)
                      ++|++|++.++ .++.+ +    ..+++|+.|+++++ .++.++.           .+++|+.|+++++ +++.++..+ 
T Consensus       221 ~~L~~L~Ls~N-~L~~l-p----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~~l-  280 (622)
T 3g06_A          221 SGLKELIVSGN-RLTSL-P----VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPESL-  280 (622)
T ss_dssp             TTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCGGG-
T ss_pred             CCCCEEEccCC-ccCcC-C----CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCHHH-
Confidence            45555555543 34443 2    34455666666554 3443331           2377888888876 677776654 


Q ss_pred             cccCCCcCEEeecCCCC
Q 045653          240 TSEWPTLQSLEATGCDN  256 (272)
Q Consensus       240 ~~~~~~L~~L~i~~c~~  256 (272)
                       ..+++|+.|++++++-
T Consensus       281 -~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          281 -IHLSSETTVNLEGNPL  296 (622)
T ss_dssp             -GGSCTTCEEECCSCCC
T ss_pred             -hhccccCEEEecCCCC
Confidence             6788888888888753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=1.6e-10  Score=105.32  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=22.3

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESC   47 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c   47 (272)
                      .+++|++|+++++ .++.+ . +...+.+++|++|+++++
T Consensus        48 ~l~~L~~L~Ls~n-~i~~~-~-~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           48 ACANLQVLILKSS-RINTI-E-GDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             SCTTCCEEECTTS-CCCEE-C-TTTTTTCTTCCEEECTTS
T ss_pred             cCCcccEEECCCC-CcCcc-C-hhhccccccCCEEECCCC
Confidence            4567778887775 33333 1 123445677777777766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.14  E-value=1.4e-09  Score=97.38  Aligned_cols=205  Identities=16%  Similarity=0.198  Sum_probs=119.0

Q ss_pred             CCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCc
Q 045653            7 DAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         7 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ..+++|++|.+.+  ++..+    .....+++|++|++++|. +.....  ..    .+++|+.|+++++. +...++..
T Consensus       153 ~~l~~L~~L~l~~--~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~--l~----~l~~L~~L~l~~n~-l~~~~~~~  218 (466)
T 1o6v_A          153 SGLTSLQQLSFGN--QVTDL----KPLANLTTLERLDISSNK-VSDISV--LA----KLTNLESLIATNNQ-ISDITPLG  218 (466)
T ss_dssp             TTCTTCSEEEEEE--SCCCC----GGGTTCTTCCEEECCSSC-CCCCGG--GG----GCTTCSEEECCSSC-CCCCGGGG
T ss_pred             ccCCcccEeecCC--cccCc----hhhccCCCCCEEECcCCc-CCCChh--hc----cCCCCCEEEecCCc-cccccccc
Confidence            4578899999864  33333    346678999999999985 333221  11    68999999999874 33333211


Q ss_pred             cccccc-cccc-----c-ccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCC
Q 045653           87 KRHSIS-SNTK-----D-SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRF  159 (272)
Q Consensus        87 ~~~~~~-~~~~-----~-~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l  159 (272)
                      ....+. +.+.     . ......+.|+ .+++..+.-..    +. .+..+++|+.|++.+|++..+.+      +..+
T Consensus       219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~-~L~l~~n~l~~----~~-~~~~l~~L~~L~l~~n~l~~~~~------~~~l  286 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDIGTLASLTNLT-DLDLANNQISN----LA-PLSGLTKLTELKLGANQISNISP------LAGL  286 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCS-EEECCSSCCCC----CG-GGTTCTTCSEEECCSSCCCCCGG------GTTC
T ss_pred             ccCCCCEEECCCCCcccchhhhcCCCCC-EEECCCCcccc----ch-hhhcCCCCCEEECCCCccCcccc------ccCC
Confidence            111111 0000     0 0111223344 44444433211    11 14556677777777765554211      3357


Q ss_pred             CCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCc
Q 045653          160 QSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH  239 (272)
Q Consensus       160 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  239 (272)
                      ++|++|++.++ .+..+ +  .+..+++|+.|++.+|. +..+..         ...+++|+.|+++++ .++.++ .. 
T Consensus       287 ~~L~~L~L~~n-~l~~~-~--~~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~l~~n-~l~~~~-~l-  349 (466)
T 1o6v_A          287 TALTNLELNEN-QLEDI-S--PISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLFFYNN-KVSDVS-SL-  349 (466)
T ss_dssp             TTCSEEECCSS-CCSCC-G--GGGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEECCSS-CCCCCG-GG-
T ss_pred             CccCeEEcCCC-cccCc-h--hhcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeECCCC-ccCCch-hh-
Confidence            77777777774 34454 2  25677778888887763 443331         234588999999887 566653 22 


Q ss_pred             cccCCCcCEEeecCCC
Q 045653          240 TSEWPTLQSLEATGCD  255 (272)
Q Consensus       240 ~~~~~~L~~L~i~~c~  255 (272)
                       ..+++|+.|++++|+
T Consensus       350 -~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          350 -ANLTNINWLSAGHNQ  364 (466)
T ss_dssp             -TTCTTCCEEECCSSC
T ss_pred             -ccCCCCCEEeCCCCc
Confidence             578999999998874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.13  E-value=9.8e-10  Score=90.26  Aligned_cols=161  Identities=18%  Similarity=0.196  Sum_probs=97.2

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|....+++++|++.++. +..+ . +.....+++|++|+++++ .+.........    .+++|+.|+++++ .++.++
T Consensus        29 ~p~~~~~~l~~L~L~~n~-l~~~-~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~----~l~~L~~L~L~~n-~l~~~~   99 (251)
T 3m19_A           29 VPSGIPADTEKLDLQSTG-LATL-S-DATFRGLTKLTWLNLDYN-QLQTLSAGVFD----DLTELGTLGLANN-QLASLP   99 (251)
T ss_dssp             CCSCCCTTCCEEECTTSC-CCCC-C-TTTTTTCTTCCEEECTTS-CCCCCCTTTTT----TCTTCCEEECTTS-CCCCCC
T ss_pred             cCCCCCCCCCEEEccCCC-cCcc-C-HhHhcCcccCCEEECCCC-cCCccCHhHhc----cCCcCCEEECCCC-cccccC
Confidence            455556789999999853 4444 1 234567899999999997 44444332222    5899999999975 344333


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ..                                         .+..+++|+.|+++++++..+.+.    .+..+++|+
T Consensus       100 ~~-----------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~  134 (251)
T 3m19_A          100 LG-----------------------------------------VFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLK  134 (251)
T ss_dssp             TT-----------------------------------------TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCC
T ss_pred             hh-----------------------------------------HhcccCCCCEEEcCCCcCCCcChh----HhccCCccc
Confidence            21                                         124556777777777765543222    244567777


Q ss_pred             EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                      +|++.++ .++.+ +...+..+++|+.|++.++ .+..++..       ....+++|+.|++.++
T Consensus       135 ~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          135 ELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTN-QLQSVPHG-------AFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT-------TTTTCTTCCEEECCSC
T ss_pred             EEECcCC-cCCcc-CHHHcCcCcCCCEEECCCC-cCCccCHH-------HHhCCCCCCEEEeeCC
Confidence            7777663 45555 4344566677777777765 34443310       1223466777777664

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.12  E-value=1.5e-10  Score=98.26  Aligned_cols=210  Identities=19%  Similarity=0.182  Sum_probs=122.4

Q ss_pred             CCCCcceeeecccccccccccccccc--cccCCccEEEEccCccceeecCCCcccc-ceeccccCeEEecCCCCcccccc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKV--DSFNELKTIKVESCDEIFAIGGEADVVT-EGIFAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~   84 (272)
                      .+++|++|+++++. ++..  .+...  +.+++|++|+++++. +...+ ...+.. .+.+++|+.|+++++ .+..+++
T Consensus        93 ~l~~L~~L~L~~n~-l~~~--~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~  166 (312)
T 1wwl_A           93 GISGLQELTLENLE-VTGT--APPPLLEATGPDLNILNLRNVS-WATRD-AWLAELQQWLKPGLKVLSIAQA-HSLNFSC  166 (312)
T ss_dssp             TTSCCCEEEEEEEB-CBSC--CCCCSSSCCSCCCSEEEEESCB-CSSSS-SHHHHHHTTCCTTCCEEEEESC-SCCCCCT
T ss_pred             CcCCccEEEccCCc-ccch--hHHHHHHhcCCCccEEEccCCC-Ccchh-HHHHHHHHhhcCCCcEEEeeCC-CCccchH
Confidence            36778888887753 2221  02222  567888888888763 33321 111100 001278888888875 3444443


Q ss_pred             CccccccccccccccccccceeecceeeeccCCCCcccccccc--cCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653           85 EVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND--KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL  162 (272)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L  162 (272)
                      ....             .++.|+ .+++..+.-.. ...++..  +..+++|+.|++.+|++..+. ......+..+++|
T Consensus       167 ~~~~-------------~l~~L~-~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L  230 (312)
T 1wwl_A          167 EQVR-------------VFPALS-TLDLSDNPELG-ERGLISALCPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQL  230 (312)
T ss_dssp             TTCC-------------CCSSCC-EEECCSCTTCH-HHHHHHHSCTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCC
T ss_pred             HHhc-------------cCCCCC-EEECCCCCcCc-chHHHHHHHhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCC
Confidence            2211             144555 66666654321 1112222  267889999999999666321 1000012356899


Q ss_pred             CEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCcccc
Q 045653          163 TRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSE  242 (272)
Q Consensus       163 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  242 (272)
                      ++|+++++ .+....+......+++|+.|+++++ .++.++  ...        .++|+.|+++++ +++.++. .  ..
T Consensus       231 ~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip--~~~--------~~~L~~L~Ls~N-~l~~~p~-~--~~  294 (312)
T 1wwl_A          231 QGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVP--KGL--------PAKLSVLDLSYN-RLDRNPS-P--DE  294 (312)
T ss_dssp             SEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCC--SSC--------CSEEEEEECCSS-CCCSCCC-T--TT
T ss_pred             CEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhh--hhc--------cCCceEEECCCC-CCCCChh-H--hh
Confidence            99999884 4555423234456789999999987 355444  111        178999999886 7777755 3  67


Q ss_pred             CCCcCEEeecCCC
Q 045653          243 WPTLQSLEATGCD  255 (272)
Q Consensus       243 ~~~L~~L~i~~c~  255 (272)
                      +++|++|++++.+
T Consensus       295 l~~L~~L~L~~N~  307 (312)
T 1wwl_A          295 LPQVGNLSLKGNP  307 (312)
T ss_dssp             SCEEEEEECTTCT
T ss_pred             CCCCCEEeccCCC
Confidence            8899999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.11  E-value=4.6e-11  Score=109.87  Aligned_cols=167  Identities=14%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             CCCCcceeeeccccccccccccc------------ccccccCCccEEEEccCccceeecCCCccccce--eccccCeEEe
Q 045653            8 AFPLLESLTLHNLINLERICIDR------------LKVDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSL   73 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~------------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l   73 (272)
                      .|++|++|.+.+++.+.++...+            .....+++|++|++++|. +.....     ..+  .+++|++|++
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~-----~~l~~~~~~L~~L~L  137 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL-----ELIAKSFKNFKVLVL  137 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHH-----HHHHHHCTTCCEEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHH-----HHHHHhCCCCcEEeC
Confidence            57899999999988776552111            012357899999999984 332111     111  4789999999


Q ss_pred             cCCCCccccccCccccccccccccccccccceeecceeeeccCCCC-cccccccccCCCCCccEEEeccccceEeccCCC
Q 045653           74 GNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLD-TSTTLFNDKVRLPKLEALELHEINVEKIWRSQV  152 (272)
Q Consensus        74 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~  152 (272)
                      ++|..+........            ...++.|+ .+++..|.-.. ....+......+++|+.|++.+|. ..+....+
T Consensus       138 ~~~~~~~~~~l~~~------------~~~~~~L~-~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          138 SSCEGFSTDGLAAI------------AATCRNLK-ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             ESCEEEEHHHHHHH------------HHHCTTCC-EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred             CCcCCCCHHHHHHH------------HHhCCCCC-EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence            99876554110000            00134555 66666554111 111233333467899999998874 11111111


Q ss_pred             CCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          153 PAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       153 ~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      ......+++|++|++.+|..+..+ + ..+..+++|++|++.+|
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l-~-~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKL-A-TLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHH-H-HHHHHCTTCSEEECSBC
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHH-H-HHHhcCCcceEcccccc
Confidence            111224688999999988766664 3 45667888888875443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=4.5e-09  Score=100.89  Aligned_cols=63  Identities=16%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP   77 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~   77 (272)
                      .+++|++|+++++.....+ . +.....+++|+.|+++++. +........+    .+++|+.|+++++.
T Consensus        46 ~l~~L~~LdLs~n~~~~~i-~-~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~----~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTI-D-KEAFRNLPNLRILDLGSSK-IYFLHPDAFQ----GLFHLFELRLYFCG  108 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEE-C-TTTTSSCTTCCEEECTTCC-CCEECTTSSC----SCSSCCCEECTTCC
T ss_pred             ccccCeEEeCCCCCCcccc-C-HHHhcCCCCCCEEECCCCc-CcccCHhHcc----CCcccCEeeCcCCC
Confidence            5678899999887554444 1 2445678889999998874 4443332222    46777888777763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.11  E-value=3.7e-10  Score=104.32  Aligned_cols=167  Identities=14%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|.+.++. +..+    +....+++|+.|++++|. +.....  ..    .+++|+.|+++++ .+..++..  
T Consensus        41 ~L~~L~~L~l~~n~-i~~l----~~l~~l~~L~~L~Ls~N~-l~~~~~--l~----~l~~L~~L~Ls~N-~l~~l~~l--  105 (605)
T 1m9s_A           41 ELNSIDQIIANNSD-IKSV----QGIQYLPNVTKLFLNGNK-LTDIKP--LT----NLKNLGWLFLDEN-KIKDLSSL--  105 (605)
T ss_dssp             HHTTCCCCBCTTCC-CCCC----TTGGGCTTCCEEECTTSC-CCCCGG--GG----GCTTCCEEECCSS-CCCCCTTS--
T ss_pred             cCCCCCEEECcCCC-CCCC----hHHccCCCCCEEEeeCCC-CCCChh--hc----cCCCCCEEECcCC-CCCCChhh--
Confidence            35667777776643 3333    234567778888887773 332221  11    4677777777765 34433211  


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                                   ..++.|+ .+.+..+.-..    + ..+..+++|+.|+|++|++..+  .    .+..+++|+.|++
T Consensus       106 -------------~~l~~L~-~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~L  160 (605)
T 1m9s_A          106 -------------KDLKKLK-SLSLEHNGISD----I-NGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSL  160 (605)
T ss_dssp             -------------TTCTTCC-EEECTTSCCCC----C-GGGGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEEC
T ss_pred             -------------ccCCCCC-EEEecCCCCCC----C-ccccCCCccCEEECCCCccCCc--h----hhcccCCCCEEEC
Confidence                         0123333 44444433211    1 2245566777777776655542  1    2335667777777


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                      .+| .+..+ ++  +..+++|+.|++++| .+..+.         .+..+++|+.|+++++
T Consensus       161 s~N-~l~~~-~~--l~~l~~L~~L~Ls~N-~i~~l~---------~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          161 EDN-QISDI-VP--LAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CSS-CCCCC-GG--GTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEECCSE
T ss_pred             cCC-cCCCc-hh--hccCCCCCEEECcCC-CCCCCh---------HHccCCCCCEEEccCC
Confidence            664 34444 21  566677777777665 343332         1223466777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.09  E-value=4.1e-11  Score=101.67  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=111.0

Q ss_pred             cCCccEEEEccCccceeecCCCc--cccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeee
Q 045653           36 FNELKTIKVESCDEIFAIGGEAD--VVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVN  113 (272)
Q Consensus        36 ~~~L~~L~l~~c~~l~~~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~  113 (272)
                      +++|++|++.+|. +........  .    .+++|+.|+++++.--...+.....          .....+.|+ .+.+.
T Consensus        90 ~~~L~~L~l~~n~-l~~~~~~~~~~~----~~~~L~~L~Ls~n~i~~~~~~~~~~----------~~~~~~~L~-~L~Ls  153 (310)
T 4glp_A           90 YSRLKELTLEDLK-ITGTMPPLPLEA----TGLALSSLRLRNVSWATGRSWLAEL----------QQWLKPGLK-VLSIA  153 (310)
T ss_dssp             HSCCCEEEEESCC-CBSCCCCCSSSC----CCBCCSSCEEESCCCSSTTSSHHHH----------HTTBCSCCC-EEEEE
T ss_pred             cCceeEEEeeCCE-eccchhhhhhhc----cCCCCCEEEeecccccchhhhhHHH----------HhhhccCCC-EEEee
Confidence            4668888888884 332222111  1    4788888888876422211100000          000134555 66666


Q ss_pred             ccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch---HHHhccccCcE
Q 045653          114 LEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA---SMIRSVEQLQH  190 (272)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~l~~L~~  190 (272)
                      .+.-..   ..+..+..+++|+.|++++|++.....-..+..+..+++|++|++.+| .++.+ +.   .....+++|++
T Consensus       154 ~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~l~~~l~~L~~  228 (310)
T 4glp_A          154 QAHSPA---FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETP-TGVCAALAAAGVQPHS  228 (310)
T ss_dssp             CCSSCC---CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCH-HHHHHHHHHHTCCCSS
T ss_pred             CCCcch---hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCch-HHHHHHHHhcCCCCCE
Confidence            654322   223456788999999999986432100000112346889999999985 45544 22   13467899999


Q ss_pred             EEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          191 LDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       191 L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      |+++++. +....+.. .   .....+++|++|+++++ +++.++...    .++|++|+++++ +++.+|
T Consensus       229 L~Ls~N~-l~~~~p~~-~---~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~~~~  288 (310)
T 4glp_A          229 LDLSHNS-LRATVNPS-A---PRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLNRAP  288 (310)
T ss_dssp             EECTTSC-CCCCCCSC-C---SSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCCSCC
T ss_pred             EECCCCC-CCccchhh-H---HhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCCCCc
Confidence            9999873 55442111 1   11122378888888875 677766644    378888888877 455543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.09  E-value=3.8e-12  Score=117.10  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=28.5

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeec-----CCCCCcccc
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT-----GCDNLKIFG  261 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~-----~c~~l~~l~  261 (272)
                      +++|+.|.+ +|.+++..........+++|++|++.     +|.+++..|
T Consensus       371 ~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          371 CPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             chhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            467777744 44555544333333468899999998     688887554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.08  E-value=2.1e-09  Score=98.45  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=70.8

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc-hHHHhccccCcEEEeecCCCcce-eeccC
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS-ASMIRSVEQLQHLDICLCKGLLG-IISED  206 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~  206 (272)
                      ..+++|+.|++.+|++....    +..+..+++|++|++.++ .++.+.. +..+..+++|+.|+++++. +.. ++...
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~  423 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRT  423 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCC
T ss_pred             cCCCCceEEECCCCccccch----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhh
Confidence            45677777777777555422    224456777777777763 4444311 1234566777777777653 333 22110


Q ss_pred             C--cc--------cc----CCccCC-CccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccccc
Q 045653          207 T--AI--------QV----TPCFVF-PRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       207 ~--~~--------~~----~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      .  ..        +.    .....+ ++|+.|+++++ +++.++...  ..+++|++|+++++ +++.+|.+
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~  491 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDG  491 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTT
T ss_pred             hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHH
Confidence            0  00        00    001122 57888888776 677777665  47788888888876 46677665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.06  E-value=1.7e-09  Score=91.69  Aligned_cols=175  Identities=16%  Similarity=0.235  Sum_probs=124.2

Q ss_pred             ccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceee
Q 045653           33 VDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEV  112 (272)
Q Consensus        33 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i  112 (272)
                      ...+++|++|++.+| .+...+.  ..    .+++|+.|+++++ .++.++.  ..             .++.|+ .+++
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~~--~~----~l~~L~~L~L~~n-~i~~~~~--~~-------------~l~~L~-~L~L   92 (308)
T 1h6u_A           37 QADLDGITTLSAFGT-GVTTIEG--VQ----YLNNLIGLELKDN-QITDLAP--LK-------------NLTKIT-ELEL   92 (308)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT--GG----GCTTCCEEECCSS-CCCCCGG--GT-------------TCCSCC-EEEC
T ss_pred             HHHcCCcCEEEeeCC-CccCchh--hh----ccCCCCEEEccCC-cCCCChh--Hc-------------cCCCCC-EEEc
Confidence            345899999999998 4443321  11    5899999999987 5555543  11             144555 6667


Q ss_pred             eccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEE
Q 045653          113 NLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLD  192 (272)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~  192 (272)
                      ..+.- .   .+ ..+..+++|+.|++++|++..+.      .+..+++|++|++.++ .+..+ +  .+..+++|+.|+
T Consensus        93 ~~n~l-~---~~-~~~~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~  157 (308)
T 1h6u_A           93 SGNPL-K---NV-SAIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLN-QITNI-S--PLAGLTNLQYLS  157 (308)
T ss_dssp             CSCCC-S---CC-GGGTTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSS-CCCCC-G--GGGGCTTCCEEE
T ss_pred             cCCcC-C---Cc-hhhcCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCC-ccCcC-c--cccCCCCccEEE
Confidence            66542 2   12 24578899999999999777632      2557899999999985 55666 3  278899999999


Q ss_pred             eecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          193 ICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       193 i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      +++| .+..+..         ...+++|+.|+++++ .++.++. .  ..+++|++|+++++ +++.++
T Consensus       158 l~~n-~l~~~~~---------l~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~N-~l~~~~  211 (308)
T 1h6u_A          158 IGNA-QVSDLTP---------LANLSKLTTLKADDN-KISDISP-L--ASLPNLIEVHLKNN-QISDVS  211 (308)
T ss_dssp             CCSS-CCCCCGG---------GTTCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECTTS-CCCBCG
T ss_pred             ccCC-cCCCChh---------hcCCCCCCEEECCCC-ccCcChh-h--cCCCCCCEEEccCC-ccCccc
Confidence            9997 4555442         234599999999986 6666654 3  68899999999988 455554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.05  E-value=2.4e-09  Score=98.83  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=74.7

Q ss_pred             cccCCCCCccEEEecccc-ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeec
Q 045653          126 NDKVRLPKLEALELHEIN-VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIIS  204 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~-l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~  204 (272)
                      ..+..+++|+.|++.+|+ ...+.+.    .+..+++|++|+++++ +++.+ ++..+.++++|+.|+++++ +++.+..
T Consensus       463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~----~~~~l~~L~~L~Ls~N-~L~~l-~~~~f~~l~~L~~L~Ls~N-~l~~l~~  535 (635)
T 4g8a_A          463 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHN-NFFSLDT  535 (635)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTS-CCCBCCC
T ss_pred             cccccchhhhhhhhhhcccccccCch----hhhhccccCEEECCCC-ccCCc-ChHHHcCCCCCCEEECCCC-cCCCCCh
Confidence            345567888888888873 3332222    4557888888888885 56666 4456778888888888886 4555542


Q ss_pred             cCCccccCCccCCCccCeeecccccccccccCCCccccC-CCcCEEeecCCC
Q 045653          205 EDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW-PTLQSLEATGCD  255 (272)
Q Consensus       205 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~i~~c~  255 (272)
                      .       ....+++|+.|++++. +++.++.... ..+ ++|++|+++++|
T Consensus       536 ~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          536 F-------PYKCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND  578 (635)
T ss_dssp             G-------GGTTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCC
T ss_pred             h-------HHhCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCC
Confidence            1       1233588888888875 6666655433 344 578888887644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.04  E-value=7.4e-12  Score=115.20  Aligned_cols=43  Identities=2%  Similarity=-0.096  Sum_probs=23.3

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeecC---CCCCccc
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG---CDNLKIF  260 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~---c~~l~~l  260 (272)
                      +++|+.|.+ .|.+++..........+++|++|++.+   |.+++..
T Consensus       377 ~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            456666666 344444332222223477788887773   5566654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.03  E-value=7.9e-10  Score=93.69  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc---ccCcEEEeecCCCcceeecc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV---EQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l---~~L~~L~i~~c~~l~~~~~~  205 (272)
                      ..+++|+.|++++|++..+... ....+..+++|++|+++++ .+....|. .+..+   ++|++|+++++ .++.++  
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~~~~~~~L~~L~Ls~N-~l~~lp--  267 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHN-SLRATVNP-SAPRCMWSSALNSLNLSFA-GLEQVP--  267 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTS-CCCCCCCS-CCSSCCCCTTCCCEECCSS-CCCSCC--
T ss_pred             hcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCC-CCCccchh-hHHhccCcCcCCEEECCCC-CCCchh--
Confidence            4556666666666654331110 0000123466666666653 23333121 12222   56666666654 344332  


Q ss_pred             CCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                      ...        +++|+.|+++++ +++.++. .  ..+++|+.|++++.
T Consensus       268 ~~~--------~~~L~~L~Ls~N-~l~~~~~-~--~~l~~L~~L~L~~N  304 (310)
T 4glp_A          268 KGL--------PAKLRVLDLSSN-RLNRAPQ-P--DELPEVDNLTLDGN  304 (310)
T ss_dssp             SCC--------CSCCSCEECCSC-CCCSCCC-T--TSCCCCSCEECSST
T ss_pred             hhh--------cCCCCEEECCCC-cCCCCch-h--hhCCCccEEECcCC
Confidence            111        156666666654 4554433 1  35566666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.02  E-value=2.1e-09  Score=97.33  Aligned_cols=84  Identities=14%  Similarity=0.109  Sum_probs=37.9

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ..+++|+.|++++|++....+.    .+  .++|++|+++++ +++.+ |.. +..+++|+.|+++++ .++.++..   
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~----~l--~~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~L~~N-~l~~l~~~---  462 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFR----CL--PPRIKVLDLHSN-KIKSI-PKQ-VVKLEALQELNVASN-QLKSVPDG---  462 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGG----SC--CTTCCEEECCSS-CCCCC-CGG-GGGCTTCCEEECCSS-CCCCCCTT---
T ss_pred             ccCccCCEEECcCCCCCcchhh----hh--cccCCEEECCCC-ccccc-chh-hhcCCCCCEEECCCC-cCCccCHH---
Confidence            3445555555555544321111    11  145566666553 33443 322 235566666666554 34433311   


Q ss_pred             cccCCccCCCccCeeeccccc
Q 045653          209 IQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~  229 (272)
                          ....+++|+.|++++++
T Consensus       463 ----~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          463 ----IFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ----TTTTCTTCCEEECCSSC
T ss_pred             ----HhccCCcccEEECcCCC
Confidence                11223556666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.01  E-value=7.4e-09  Score=93.33  Aligned_cols=204  Identities=15%  Similarity=0.123  Sum_probs=121.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+|+++. ++..    .+.+.+++|++|++++| .+...+.         .++|+.|+++++ .+..++....
T Consensus        56 ~l~~L~~L~Ls~N~-l~~~----~~l~~l~~L~~L~Ls~N-~l~~l~~---------~~~L~~L~L~~N-~l~~~~~~~l  119 (487)
T 3oja_A           56 PFTKLELLNLSSNV-LYET----LDLESLSTLRTLDLNNN-YVQELLV---------GPSIETLHAANN-NISRVSCSRG  119 (487)
T ss_dssp             TCTTCCEEECTTSC-CEEE----EECTTCTTCCEEECCSS-EEEEEEE---------CTTCCEEECCSS-CCCCEEECCC
T ss_pred             CCCCCCEEEeeCCC-CCCC----cccccCCCCCEEEecCC-cCCCCCC---------CCCcCEEECcCC-cCCCCCcccc
Confidence            56899999999864 4333    22667899999999998 3443321         245555555543 2222222111


Q ss_pred             ccccc-cc-----ccc---ccccccceeecceeeeccCCCCcccccccccC-CCCCccEEEeccccceEeccCCCCCCCC
Q 045653           88 RHSIS-SN-----TKD---SQDQSMTAITCSYEVNLEDKLDTSTTLFNDKV-RLPKLEALELHEINVEKIWRSQVPAKFP  157 (272)
Q Consensus        88 ~~~~~-~~-----~~~---~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~i~~~~~~~~~~  157 (272)
                      . .+. +.     +..   .....++.|+ .+++..+.-..   ..+..+. .+++|+.|++++|.+..+.+      ..
T Consensus       120 ~-~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~---~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~  188 (487)
T 3oja_A          120 Q-GKKNIYLANNKITMLRDLDEGCRSRVQ-YLDLKLNEIDT---VNFAELAASSDTLEHLNLQYNFIYDVKG------QV  188 (487)
T ss_dssp             S-SCEEEECCSSCCCSGGGBCGGGGSSEE-EEECTTSCCCE---EEGGGGGGGTTTCCEEECTTSCCCEEEC------CC
T ss_pred             C-CCCEEECCCCCCCCCCchhhcCCCCCC-EEECCCCCCCC---cChHHHhhhCCcccEEecCCCccccccc------cc
Confidence            0 000 00     000   0011244555 66666553322   2333333 68999999999998877522      22


Q ss_pred             CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc-ccccC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL-RFFYP  236 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~  236 (272)
                      .+++|++|+++++ .++.+ ++. +..+++|+.|+++++ .+..++  ..      ...+++|+.|++++++-. ..++.
T Consensus       189 ~l~~L~~L~Ls~N-~l~~~-~~~-~~~l~~L~~L~Ls~N-~l~~lp--~~------l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          189 VFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISLRNN-KLVLIE--KA------LRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             CCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEECTTS-CCCEEC--TT------CCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             cCCCCCEEECCCC-CCCCC-CHh-HcCCCCccEEEecCC-cCcccc--hh------hccCCCCCEEEcCCCCCcCcchHH
Confidence            5899999999984 56666 543 778999999999996 476665  22      233589999999987543 12222


Q ss_pred             CCccccCCCcCEEeec
Q 045653          237 GMHTSEWPTLQSLEAT  252 (272)
Q Consensus       237 ~~~~~~~~~L~~L~i~  252 (272)
                      ..  ..++.|+.+.+.
T Consensus       257 ~~--~~l~~L~~l~~~  270 (487)
T 3oja_A          257 FF--SKNQRVQTVAKQ  270 (487)
T ss_dssp             HH--TTCHHHHHHHHH
T ss_pred             HH--HhCCCCcEEecc
Confidence            22  345566665553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.00  E-value=2.4e-09  Score=82.36  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=87.0

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|.+..+  .    .+..+++|++|++.++. +... .+.....+++|+.|+++++ .++.++... 
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-  114 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLE-  114 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGG-
T ss_pred             HHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCC-ccCcchhHH-
Confidence            45678999999999987764  2    46679999999999865 4553 2346677999999999997 465543211 


Q ss_pred             ccccCCccCCCccCeeecccccccccccCC--CccccCCCcCEEeecCCCCCccccccc
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                           ....+++|+.|+++++ .++..+..  .....+++|++|++.+|. ++.+|.+.
T Consensus       115 -----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~  166 (168)
T 2ell_A          115 -----PLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDSD  166 (168)
T ss_dssp             -----GGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSSS
T ss_pred             -----HHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccccc
Confidence                 1334599999999987 66666550  112678999999999985 55566544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.00  E-value=2.8e-08  Score=92.04  Aligned_cols=64  Identities=19%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|...+++|++|++.++ +++.+   +.   .+++|++|+++++. +..++.        .+++|+.|+++++ .++.++
T Consensus        55 lp~~l~~~L~~L~L~~N-~l~~l---p~---~l~~L~~L~Ls~N~-l~~lp~--------~l~~L~~L~Ls~N-~l~~l~  117 (622)
T 3g06_A           55 LPDCLPAHITTLVIPDN-NLTSL---PA---LPPELRTLEVSGNQ-LTSLPV--------LPPGLLELSIFSN-PLTHLP  117 (622)
T ss_dssp             CCSCCCTTCSEEEECSC-CCSCC---CC---CCTTCCEEEECSCC-CSCCCC--------CCTTCCEEEECSC-CCCCCC
T ss_pred             cChhhCCCCcEEEecCC-CCCCC---CC---cCCCCCEEEcCCCc-CCcCCC--------CCCCCCEEECcCC-cCCCCC
Confidence            34445578888888875 45544   11   46888888888874 443332        3677888887764 444444


Q ss_pred             c
Q 045653           84 R   84 (272)
Q Consensus        84 ~   84 (272)
                      .
T Consensus       118 ~  118 (622)
T 3g06_A          118 A  118 (622)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.99  E-value=6.6e-09  Score=95.13  Aligned_cols=176  Identities=11%  Similarity=0.098  Sum_probs=113.8

Q ss_pred             CCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccc-cccCccccccccccccccccccceeecceeeecc
Q 045653           37 NELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTS-FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLE  115 (272)
Q Consensus        37 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~  115 (272)
                      .+|++|++.++.- ......  .    .+++|+.|+++++. +.. .+... .             ..+.++ .+++..+
T Consensus       331 ~~L~~L~l~~n~~-~~~~~~--~----~l~~L~~L~l~~n~-l~~~~~~~~-~-------------~l~~L~-~L~L~~N  387 (562)
T 3a79_B          331 MNIKMLSISDTPF-IHMVCP--P----SPSSFTFLNFTQNV-FTDSVFQGC-S-------------TLKRLQ-TLILQRN  387 (562)
T ss_dssp             CCCSEEEEESSCC-CCCCCC--S----SCCCCCEEECCSSC-CCTTTTTTC-C-------------SCSSCC-EEECCSS
T ss_pred             CcceEEEccCCCc-ccccCc--c----CCCCceEEECCCCc-cccchhhhh-c-------------ccCCCC-EEECCCC
Confidence            5688888888843 222110  1    47888888888763 333 22211 1             134444 5555554


Q ss_pred             CCCCcccccccccCCCCCccEEEeccccceE-eccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc-ccCcEEEe
Q 045653          116 DKLDTSTTLFNDKVRLPKLEALELHEINVEK-IWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV-EQLQHLDI  193 (272)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i  193 (272)
                      . +.....++..+..+++|+.|++++|++.. +...    .+..+++|++|++.++. ++...+    ..+ ++|+.|++
T Consensus       388 ~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~----~~l~~~L~~L~L  457 (562)
T 3a79_B          388 G-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR----TCAWAESILVLNLSSNM-LTGSVF----RCLPPKVKVLDL  457 (562)
T ss_dssp             C-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC----CCCCCTTCCEEECCSSC-CCGGGG----SSCCTTCSEEEC
T ss_pred             C-cCCcccchhhhcCCCCCCEEECCCCcCCCccChh----hhcCcccCCEEECCCCC-CCcchh----hhhcCcCCEEEC
Confidence            2 22111334456788999999999997765 2222    35578999999999865 333312    344 69999999


Q ss_pred             ecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCC
Q 045653          194 CLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDN  256 (272)
Q Consensus       194 ~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~  256 (272)
                      +++ +++.++  ...      ..+++|+.|+++++ +++.++... ...+++|+.|++++++-
T Consensus       458 ~~N-~l~~ip--~~~------~~l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          458 HNN-RIMSIP--KDV------THLQALQELNVASN-QLKSVPDGV-FDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CSS-CCCCCC--TTT------TSSCCCSEEECCSS-CCCCCCTTS-TTTCTTCCCEECCSCCB
T ss_pred             CCC-cCcccC--hhh------cCCCCCCEEECCCC-CCCCCCHHH-HhcCCCCCEEEecCCCc
Confidence            987 577665  222      23599999999986 788888762 26789999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.96  E-value=5.6e-09  Score=83.11  Aligned_cols=36  Identities=11%  Similarity=0.088  Sum_probs=19.3

Q ss_pred             cCCccEEEEccCccceeecCCCccccceeccccCeEEecCC
Q 045653           36 FNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNL   76 (272)
Q Consensus        36 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c   76 (272)
                      .++|++|++.++ ++.........    .+++|+.|+++++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~----~l~~L~~L~l~~n   62 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFD----ELTSLTQLYLGGN   62 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTT----TCTTCSEEECCSS
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhc----ccccCcEEECCCC
Confidence            456777777766 33333222111    3667777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.95  E-value=7.6e-10  Score=91.72  Aligned_cols=166  Identities=16%  Similarity=0.201  Sum_probs=80.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+.+++.+.+.+ ..++++    .....+++|+.|++.+| .+...+.  ..    .+++|+.|+++++ .++.++.  .
T Consensus        17 ~l~~l~~l~l~~-~~i~~~----~~~~~l~~L~~L~l~~n-~i~~l~~--l~----~l~~L~~L~L~~N-~i~~~~~--l   81 (263)
T 1xeu_A           17 GLANAVKQNLGK-QSVTDL----VSQKELSGVQNFNGDNS-NIQSLAG--MQ----FFTNLKELHLSHN-QISDLSP--L   81 (263)
T ss_dssp             HHHHHHHHHHTC-SCTTSE----ECHHHHTTCSEEECTTS-CCCCCTT--GG----GCTTCCEEECCSS-CCCCCGG--G
T ss_pred             HHHHHHHHHhcC-CCcccc----cchhhcCcCcEEECcCC-CcccchH--Hh----hCCCCCEEECCCC-ccCCChh--h
Confidence            334455555554 233333    23445778888888877 4443321  11    4778888888765 3444332  0


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                      .             .+++|+ .+++..+.-.    .++. +.. ++|+.|++++|++..+ +     .+..+++|++|++
T Consensus        82 ~-------------~l~~L~-~L~L~~N~l~----~l~~-~~~-~~L~~L~L~~N~l~~~-~-----~l~~l~~L~~L~L  135 (263)
T 1xeu_A           82 K-------------DLTKLE-ELSVNRNRLK----NLNG-IPS-ACLSRLFLDNNELRDT-D-----SLIHLKNLEILSI  135 (263)
T ss_dssp             T-------------TCSSCC-EEECCSSCCS----CCTT-CCC-SSCCEEECCSSCCSBS-G-----GGTTCTTCCEEEC
T ss_pred             c-------------cCCCCC-EEECCCCccC----CcCc-ccc-CcccEEEccCCccCCC-h-----hhcCcccccEEEC
Confidence            0             022222 3333332211    1111 111 5666666666655442 1     2335666666666


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccc
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                      .++ .++.+ +  .+..+++|+.|+++++ .+..+         .....+++|+.|+++++
T Consensus       136 s~N-~i~~~-~--~l~~l~~L~~L~L~~N-~i~~~---------~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          136 RNN-KLKSI-V--MLGFLSKLEVLDLHGN-EITNT---------GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TTS-CCCBC-G--GGGGCTTCCEEECTTS-CCCBC---------TTSTTCCCCCEEEEEEE
T ss_pred             CCC-cCCCC-h--HHccCCCCCEEECCCC-cCcch---------HHhccCCCCCEEeCCCC
Confidence            653 34444 2  3555666666666664 23332         11223466666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.95  E-value=9.1e-10  Score=92.59  Aligned_cols=109  Identities=18%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|++..+ +     .+..+++|++|++.++ .+..+   ..+..+++|+.|+++++ .+..+.    
T Consensus        86 l~~l~~L~~L~l~~n~l~~~-~-----~l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n-~l~~~~----  150 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL-S-----SLKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNN-KITDIT----  150 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG-G-----GGTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSS-CCCCCG----
T ss_pred             cccCCCCCEEECCCCcCCCC-h-----hhccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCC-cCCcch----
Confidence            46789999999999977652 1     2557899999999985 56666   35788999999999987 354441    


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                           .+..+++|+.|+++++ .++.++. .  ..+++|+.|+++++ +++.++
T Consensus       151 -----~l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~L~~N-~i~~l~  194 (291)
T 1h6t_A          151 -----VLSRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLR  194 (291)
T ss_dssp             -----GGGGCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCG
T ss_pred             -----hhccCCCCCEEEccCC-ccccchh-h--cCCCccCEEECCCC-cCCCCh
Confidence                 2334699999999987 6776655 3  68899999999987 566554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.94  E-value=1.5e-10  Score=106.43  Aligned_cols=222  Identities=14%  Similarity=0.058  Sum_probs=117.4

Q ss_pred             CCCCcceeeecccccccccccccccc------------cccCCccEEEEccCccceeecCCCccccce--eccc-cCeEE
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKV------------DSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQ-ISCLS   72 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~------------~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~-L~~L~   72 (272)
                      .|++|++|++.+|+.+.+....+...            ..+++|++|++++| .+.....     ..+  .+++ |++|+
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~-----~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL-----DRLAKARADDLETLK  144 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH-----HHHHHHHGGGCCEEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH-----HHHHHhccccCcEEE
Confidence            57899999999988765432111111            15789999999988 3332111     111  2455 99999


Q ss_pred             ecCCCCccccccCccccccccccccccccccceeecceeeeccCCCCc-ccccccccCCCCCccEEEeccccceEeccCC
Q 045653           73 LGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDT-STTLFNDKVRLPKLEALELHEINVEKIWRSQ  151 (272)
Q Consensus        73 l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~  151 (272)
                      +++|..+..-.....            ...++.|+ .+++..|.-... ...+......+++|+.|++.++++..+....
T Consensus       145 L~~~~~~~~~~l~~~------------~~~~~~L~-~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~  211 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSI------------VTHCRKIK-TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD  211 (592)
T ss_dssp             EESCEEEEHHHHHHH------------HHHCTTCS-EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred             CcCCCCcCHHHHHHH------------HhhCCCCC-EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence            998864322100000            00134455 666665532110 0012222345788888888877554221122


Q ss_pred             CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCc----------------ceeeccCC-cccc-CC
Q 045653          152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGL----------------LGIISEDT-AIQV-TP  213 (272)
Q Consensus       152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l----------------~~~~~~~~-~~~~-~~  213 (272)
                      ++..+..+++|++|++.+|. +..+ + ..+..+++|++|++.++...                +.+..... .... ..
T Consensus       212 l~~~~~~~~~L~~L~L~~~~-~~~l-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~  288 (592)
T 3ogk_B          212 LETIARNCRSLVSVKVGDFE-ILEL-V-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL  288 (592)
T ss_dssp             HHHHHHHCTTCCEEECSSCB-GGGG-H-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred             HHHHHhhCCCCcEEeccCcc-HHHH-H-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence            22223457888888888854 3344 3 46777888888888753221                11000000 0000 01


Q ss_pred             ccCCCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653          214 CFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT  252 (272)
Q Consensus       214 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~  252 (272)
                      ...+++|++|++++|. ++..........+++|++|++.
T Consensus       289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred             HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence            2235678888887775 4333221112567888888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.91  E-value=1.6e-08  Score=81.35  Aligned_cols=131  Identities=19%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             CCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeeccC
Q 045653           37 NELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLED  116 (272)
Q Consensus        37 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~  116 (272)
                      ++|+.|++.++ .+.........    .+++|+.|+++++ .+..+.                                 
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~----~l~~L~~L~Ls~N-~i~~~~---------------------------------   72 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFS----PYKKLRRIDLSNN-QISELA---------------------------------   72 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSST----TCTTCCEEECCSS-CCCEEC---------------------------------
T ss_pred             cCCCEEECCCC-cCCCcCHhHhh----CCCCCCEEECCCC-cCCCcC---------------------------------
Confidence            67888888776 34444332222    4678888888764 233221                                 


Q ss_pred             CCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          117 KLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       117 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                              +..+..+++|+.|+++++++..+.+.    .+..+++|++|++.+ +.+..+ +...+..+++|+.|++.++
T Consensus        73 --------~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           73 --------PDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNA-NKINCL-RVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             --------TTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             --------HHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCC-CCCCEe-CHHHcCCCCCCCEEECCCC
Confidence                    12234556666666666655543222    244566666666666 344444 3345556666666666664


Q ss_pred             CCcceeeccCCccccCCccCCCccCeeecccc
Q 045653          197 KGLLGIISEDTAIQVTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       197 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  228 (272)
                       .++.+...       ....+++|+.|++.+.
T Consensus       139 -~l~~~~~~-------~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          139 -KLQTIAKG-------TFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             -CCSCCCTT-------TTTTCTTCCEEECCSS
T ss_pred             -cCCEECHH-------HHhCCCCCCEEEeCCC
Confidence             34443311       1222466666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.90  E-value=1.9e-08  Score=80.94  Aligned_cols=58  Identities=12%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecC-CCccccceeccccCeEEecCCCCcccc
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGG-EADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      +++++++ .+++.+   +.  ...+.+++|+++++ .+..... ....    .+++|+.|+++++ +++.+
T Consensus        14 ~~l~~s~-n~l~~i---P~--~~~~~~~~L~L~~N-~l~~~~~~~~~~----~l~~L~~L~L~~N-~i~~i   72 (220)
T 2v70_A           14 TTVDCSN-QKLNKI---PE--HIPQYTAELRLNNN-EFTVLEATGIFK----KLPQLRKINFSNN-KITDI   72 (220)
T ss_dssp             TEEECCS-SCCSSC---CS--CCCTTCSEEECCSS-CCCEECCCCCGG----GCTTCCEEECCSS-CCCEE
T ss_pred             CEeEeCC-CCcccC---cc--CCCCCCCEEEcCCC-cCCccCchhhhc----cCCCCCEEECCCC-cCCEE
Confidence            4566655 334444   11  22456778888776 3443322 1111    4778888888764 34443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.88  E-value=2.3e-09  Score=99.00  Aligned_cols=171  Identities=16%  Similarity=0.220  Sum_probs=120.8

Q ss_pred             cccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeeccee
Q 045653           32 KVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYE  111 (272)
Q Consensus        32 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  111 (272)
                      ....+++|+.|++.+|. +...+.  ..    .+++|+.|+|+++ .+..+++.  .             .++.|+ .+.
T Consensus        38 ~~~~L~~L~~L~l~~n~-i~~l~~--l~----~l~~L~~L~Ls~N-~l~~~~~l--~-------------~l~~L~-~L~   93 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSD-IKSVQG--IQ----YLPNVTKLFLNGN-KLTDIKPL--T-------------NLKNLG-WLF   93 (605)
T ss_dssp             CHHHHTTCCCCBCTTCC-CCCCTT--GG----GCTTCCEEECTTS-CCCCCGGG--G-------------GCTTCC-EEE
T ss_pred             chhcCCCCCEEECcCCC-CCCChH--Hc----cCCCCCEEEeeCC-CCCCChhh--c-------------cCCCCC-EEE
Confidence            34568999999999884 333321  11    5899999999986 45554431  1             134555 666


Q ss_pred             eeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEE
Q 045653          112 VNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHL  191 (272)
Q Consensus       112 i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L  191 (272)
                      +..+.- .   .+ ..+..+++|+.|+|.+|++..+ +     .+..+++|+.|++.++ .+..+   ..+..+++|+.|
T Consensus        94 Ls~N~l-~---~l-~~l~~l~~L~~L~Ls~N~l~~l-~-----~l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L  158 (605)
T 1m9s_A           94 LDENKI-K---DL-SSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTL  158 (605)
T ss_dssp             CCSSCC-C---CC-TTSTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCSEEECCSS-CCCCC---GGGGSCTTCSEE
T ss_pred             CcCCCC-C---CC-hhhccCCCCCEEEecCCCCCCC-c-----cccCCCccCEEECCCC-ccCCc---hhhcccCCCCEE
Confidence            666532 2   12 2467899999999999977763 1     2557899999999985 55665   457899999999


Q ss_pred             EeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          192 DICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       192 ~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ++++| .+..+..         +..+++|+.|+++++ .++.++. +  ..+++|+.|++++|+
T Consensus       159 ~Ls~N-~l~~~~~---------l~~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          159 SLEDN-QISDIVP---------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSS-CCCCCGG---------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEECCSEE
T ss_pred             ECcCC-cCCCchh---------hccCCCCCEEECcCC-CCCCChH-H--ccCCCCCEEEccCCc
Confidence            99987 4555442         334599999999987 6777643 3  678999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.87  E-value=1.2e-08  Score=78.39  Aligned_cols=61  Identities=26%  Similarity=0.352  Sum_probs=26.5

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch---HHHhccccCcEEEeecC
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA---SMIRSVEQLQHLDICLC  196 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~l~~L~~L~i~~c  196 (272)
                      +++|+.|++.+|++..+...   ..+..+++|++|++.+++ +..+ +.   ..+..+++|+.|++.+|
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~-l~~~-~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCE-VTNL-NDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSG-GGTS-TTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCc-Ccch-HHHHHHHHHhCccCcEecCCCC
Confidence            45555555555544332110   123345555555555432 2332 21   23444555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.87  E-value=7.1e-09  Score=77.97  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED  206 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  206 (272)
                      .+..+++|+.|++.+|++..+  .    .+..+++|++|++.++. +... .+.....+++|+.|+++++. ++.++...
T Consensus        37 ~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~  107 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIE  107 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHG
T ss_pred             HHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHH
Confidence            346789999999999977764  2    46679999999999854 5553 23456779999999999974 55442111


Q ss_pred             CccccCCccCCCccCeeecccccccccccCC--CccccCCCcCEEeecC
Q 045653          207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSLEATG  253 (272)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~~  253 (272)
                      .      ...+++|+.|+++++ .++..+..  .....+++|++|++++
T Consensus       108 ~------~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          108 P------LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             G------GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             H------HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence            1      334599999999997 67776651  1226789999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.86  E-value=1e-08  Score=81.56  Aligned_cols=111  Identities=21%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.++++..+.+.    .+..+++|++|++.++ .++.+ +...+..+++|++|+++++ .+..++.  .
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~--~  118 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNG----VFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALNTN-QLQSLPD--G  118 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T
T ss_pred             hcccccCcEEECCCCccCccChh----hcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcCCC-cCcccCH--h
Confidence            34567777777777766543222    3445677777777764 44454 4344566777777777765 3444331  1


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                           ....+++|+.|+++++ .++.++.... ..+++|++|++.++
T Consensus       119 -----~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          119 -----VFDKLTQLKDLRLYQN-QLKSVPDGVF-DRLTSLQYIWLHDN  158 (208)
T ss_dssp             -----TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSC
T ss_pred             -----HhccCCcCCEEECCCC-ccceeCHHHh-ccCCCccEEEecCC
Confidence                 1223467777777664 5555554321 45677777777664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.86  E-value=4.6e-08  Score=87.37  Aligned_cols=57  Identities=21%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +..+++|+.|++.+|++..+ +.       ..++|++|++.++ .+..+ +  .+..+++|+.|+++++
T Consensus       191 ~~~l~~L~~L~l~~N~l~~l-~~-------~~~~L~~L~l~~n-~l~~l-p--~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKKL-PD-------LPLSLESIVAGNN-ILEEL-P--ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSC-CC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSS
T ss_pred             ccCCCCCCEEECCCCcCCcC-CC-------CcCcccEEECcCC-cCCcc-c--ccCCCCCCCEEECCCC
Confidence            45667777777776654431 11       1235555555554 33333 3  1445555555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.85  E-value=4.1e-08  Score=79.46  Aligned_cols=111  Identities=18%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.++++..+.+.    .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ ++..++  ..
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~lp--~~  130 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALPVG----VFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMCCN-KLTELP--RG  130 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCSCC--TT
T ss_pred             hhCccCCcEEECCCCCCCCcChh----hcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEeccCC-cccccC--cc
Confidence            35567777777777766553222    3456777777777763 55555 4444566777777777765 355443  22


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      .      ..+++|+.|+++++ +++.++.... ..+++|+.|++.+.+
T Consensus       131 ~------~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          131 I------ERLTHLTHLALDQN-QLKSIPHGAF-DRLSSLTHAYLFGNP  170 (229)
T ss_dssp             G------GGCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECTTSC
T ss_pred             c------ccCCCCCEEECCCC-cCCccCHHHH-hCCCCCCEEEeeCCC
Confidence            2      23477777777764 6666654321 456777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.85  E-value=2.3e-08  Score=80.94  Aligned_cols=151  Identities=17%  Similarity=0.121  Sum_probs=88.1

Q ss_pred             CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccc
Q 045653           11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHS   90 (272)
Q Consensus        11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~   90 (272)
                      .-+.+++++ .+++.+   +.  +..++|+.|+++++. +.........    .+++|+.|+++++ .+..++.      
T Consensus        20 s~~~v~c~~-~~l~~i---p~--~~~~~L~~L~Ls~n~-i~~~~~~~~~----~l~~L~~L~L~~N-~l~~i~~------   81 (229)
T 3e6j_A           20 SGTTVDCRS-KRHASV---PA--GIPTNAQILYLHDNQ-ITKLEPGVFD----SLINLKELYLGSN-QLGALPV------   81 (229)
T ss_dssp             ETTEEECTT-SCCSSC---CS--CCCTTCSEEECCSSC-CCCCCTTTTT----TCTTCCEEECCSS-CCCCCCT------
T ss_pred             eCCEeEccC-CCcCcc---CC--CCCCCCCEEEcCCCc-cCccCHHHhh----CccCCcEEECCCC-CCCCcCh------
Confidence            345666654 344444   21  234888999998873 4433332222    4788888888874 3333322      


Q ss_pred             cccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653           91 ISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC  170 (272)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c  170 (272)
                                                         ..+..+++|+.|++++|++..+.+.    .+..+++|++|++.+ 
T Consensus        82 -----------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~-  121 (229)
T 3e6j_A           82 -----------------------------------GVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCC-  121 (229)
T ss_dssp             -----------------------------------TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-
T ss_pred             -----------------------------------hhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccC-
Confidence                                               1134567777777777766653322    344677777777776 


Q ss_pred             cCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccc
Q 045653          171 HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       171 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      +.++.+ |. .+..+++|+.|+++++ .+..++.  .     ....+++|+.|++.+.+
T Consensus       122 N~l~~l-p~-~~~~l~~L~~L~L~~N-~l~~~~~--~-----~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          122 NKLTEL-PR-GIERLTHLTHLALDQN-QLKSIPH--G-----AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCSC-CT-TGGGCTTCSEEECCSS-CCCCCCT--T-----TTTTCTTCCEEECTTSC
T ss_pred             Cccccc-Cc-ccccCCCCCEEECCCC-cCCccCH--H-----HHhCCCCCCEEEeeCCC
Confidence            345555 42 3467777788877775 4554442  1     12234777777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.85  E-value=1.5e-08  Score=90.52  Aligned_cols=58  Identities=14%  Similarity=0.122  Sum_probs=35.9

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      .+..+++|+.|++++|++..+ +.       ..++|++|++.++ .++.+ +  .+.++++|+.|++.++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~l-p~-------~~~~L~~L~L~~n-~l~~l-~--~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKL-PD-------LPPSLEFIAAGNN-QLEEL-P--ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC-CC-------CCTTCCEEECCSS-CCSSC-C--CCTTCTTCCEEECCSS
T ss_pred             ccCCCCCCCEEECCCCcCccc-CC-------CcccccEEECcCC-cCCcC-c--cccCCCCCCEEECCCC
Confidence            356777888888887765542 11       1346777777764 44444 3  3566777777777665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.82  E-value=1.1e-07  Score=87.57  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=89.6

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED  206 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  206 (272)
                      .+..+++++.+++..+.+..+.+.    .+..+++|+.|++.++.....+ .+..+..+++|+.|++++| +++.+++..
T Consensus       440 ~~~~l~~l~~l~ls~n~l~~~~~~----~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~  513 (635)
T 4g8a_A          440 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSPTA  513 (635)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred             cccccccccccccccccccccccc----ccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC-ccCCcChHH
Confidence            346678889999988877764443    4557899999999988766655 4456788999999999998 577765321


Q ss_pred             CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccc
Q 045653          207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                             +..+++|+.|+++++ +++.++...+ ..+++|+.|+++++ +++.+++
T Consensus       514 -------f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~  559 (635)
T 4g8a_A          514 -------FNSLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLN-HIMTSKK  559 (635)
T ss_dssp             -------TTTCTTCCEEECTTS-CCCBCCCGGG-TTCTTCCEEECTTS-CCCBCCS
T ss_pred             -------HcCCCCCCEEECCCC-cCCCCChhHH-hCCCCCCEEECCCC-cCCCCCH
Confidence                   334599999999986 7877766432 57899999999987 4555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.80  E-value=1.2e-07  Score=76.12  Aligned_cols=112  Identities=16%  Similarity=0.282  Sum_probs=85.7

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.++++..+.+.    .+..+++|++|++.+ +.++.+ +...+..+++|+.|+++++ .+..+...  
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--  123 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTS-NRLENV-QHKMFKGLESLKTLMLRSN-RITCVGND--  123 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCS-SCCCCC-CGGGGTTCSSCCEEECTTS-CCCCBCTT--
T ss_pred             hccCCCCCEEECCCCcCCEECHH----HhCCCCCCCEEECCC-CccCcc-CHhHhcCCcCCCEEECCCC-cCCeECHh--
Confidence            56789999999999988876544    466899999999998 456666 5566889999999999986 46555421  


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                           ....+++|+.|+++++ +++.+....+ ..+++|++|++.+++
T Consensus       124 -----~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          124 -----SFIGLSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP  164 (220)
T ss_dssp             -----SSTTCTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred             -----HcCCCccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence                 1234599999999985 7777744322 578999999998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.77  E-value=6.6e-08  Score=83.62  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             CCCCCCCcceeeeccccccccccccccccc-ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            5 PCDAFPLLESLTLHNLINLERICIDRLKVD-SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      |....+.+++|+|++. +++.+..  .... .+++|+.|++.++ ++.........    .+++|+.|++++. +++.++
T Consensus        34 P~~~~~~l~~L~Ls~N-~l~~l~~--~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~----~l~~L~~L~Ls~N-~l~~~~  104 (361)
T 2xot_A           34 PQSLPSYTALLDLSHN-NLSRLRA--EWTPTRLTNLHSLLLSHN-HLNFISSEAFV----PVPNLRYLDLSSN-HLHTLD  104 (361)
T ss_dssp             CSSCCTTCSEEECCSS-CCCEECT--TSSSSCCTTCCEEECCSS-CCCEECTTTTT----TCTTCCEEECCSS-CCCEEC
T ss_pred             CccCCCCCCEEECCCC-CCCccCh--hhhhhcccccCEEECCCC-cCCccChhhcc----CCCCCCEEECCCC-cCCcCC
Confidence            4344455777777763 4444411  1122 4677777777766 34444332222    4677777777763 354443


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      ......             ++.|+ .+++..+.-..   ..+..+..+++|+.|+|++|++..+...... .+..+++|+
T Consensus       105 ~~~~~~-------------l~~L~-~L~L~~N~i~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~~l~~L~  166 (361)
T 2xot_A          105 EFLFSD-------------LQALE-VLLLYNNHIVV---VDRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLM  166 (361)
T ss_dssp             TTTTTT-------------CTTCC-EEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCC
T ss_pred             HHHhCC-------------CcCCC-EEECCCCcccE---ECHHHhCCcccCCEEECCCCcCCeeCHHHhc-CcccCCcCC
Confidence            322111             22333 33333322111   1123344556666666666654442221100 012355666


Q ss_pred             EEEEecCcCCccccchHHHhcccc--CcEEEeec
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQ--LQHLDICL  195 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~--L~~L~i~~  195 (272)
                      .|++.+ +.++.+ +...+..++.  |+.|++.+
T Consensus       167 ~L~L~~-N~l~~l-~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          167 LLDLSS-NKLKKL-PLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             EEECCS-SCCCCC-CHHHHHHSCHHHHTTEECCS
T ss_pred             EEECCC-CCCCcc-CHHHhhhccHhhcceEEecC
Confidence            666655 344444 4444455554  25555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.77  E-value=1.4e-07  Score=75.78  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=87.6

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED  206 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  206 (272)
                      .+..+++|+.|++.++++..+.+.    .+..+++|++|++.+ +.++.+ +...+..+++|+.|++.++ .+..+... 
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~~-  122 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQLLLLNAN-KINCLRVD-  122 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTT----TTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHH----HhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCEEECCCC-CCCEeCHH-
Confidence            346789999999999988876444    466899999999998 466776 6666788999999999996 46555421 


Q ss_pred             CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                            ....+++|+.|+++++ .++.++...+ ..+++|++|++.+.+
T Consensus       123 ------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          123 ------AFQDLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP  163 (220)
T ss_dssp             ------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             ------HcCCCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence                  2334699999999986 7777776432 578999999998865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.75  E-value=4.4e-10  Score=98.12  Aligned_cols=142  Identities=14%  Similarity=0.082  Sum_probs=85.5

Q ss_pred             ceeecceeeeccCCC-CcccccccccCCCCCccEEEeccccceEecc-CCCCCCCCCCCCcCEEEEecCcCCc-----cc
Q 045653          104 TAITCSYEVNLEDKL-DTSTTLFNDKVRLPKLEALELHEINVEKIWR-SQVPAKFPRFQSLTRLVVSNCHKLK-----YL  176 (272)
Q Consensus       104 ~~l~~~l~i~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~-~~~~~~~~~l~~L~~L~i~~c~~l~-----~l  176 (272)
                      +.|+ .+.+..+.-. .....+...+..+++|+.|++.+|++..... ...+..+..+++|++|++.++. ++     .+
T Consensus       159 ~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLR-SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL  236 (386)
T ss_dssp             CCCC-EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             CCCc-EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence            4555 6666655432 1111222345678899999999996652100 0011134578999999999865 43     22


Q ss_pred             cchHHHhccccCcEEEeecCCCcceeeccCCccccCCc--cCCCccCeeeccccccccc-----ccCCCccccCCCcCEE
Q 045653          177 FSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPC--FVFPRVSTLRLIDLPKLRF-----FYPGMHTSEWPTLQSL  249 (272)
Q Consensus       177 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L  249 (272)
                       + ..+..+++|++|++++|. +.......-..   .+  ..+++|+.|+++++ .++.     ++... ...+++|++|
T Consensus       237 -~-~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L  308 (386)
T 2ca6_A          237 -A-IALKSWPNLRELGLNDCL-LSARGAAAVVD---AFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFL  308 (386)
T ss_dssp             -H-HHGGGCTTCCEEECTTCC-CCHHHHHHHHH---HHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred             -H-HHHccCCCcCEEECCCCC-CchhhHHHHHH---HHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEE
Confidence             2 356788999999999884 43331100000   01  12589999999987 5555     44322 1357999999


Q ss_pred             eecCCC
Q 045653          250 EATGCD  255 (272)
Q Consensus       250 ~i~~c~  255 (272)
                      ++++|+
T Consensus       309 ~l~~N~  314 (386)
T 2ca6_A          309 ELNGNR  314 (386)
T ss_dssp             ECTTSB
T ss_pred             EccCCc
Confidence            999885

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.74  E-value=1.2e-07  Score=86.97  Aligned_cols=189  Identities=14%  Similarity=0.141  Sum_probs=123.5

Q ss_pred             CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccc
Q 045653           11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHS   90 (272)
Q Consensus        11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~   90 (272)
                      +|++|++.++ +++.+   +..  .+++|+.|+++++ ++..++ .       .+++|+.|+++++ .++.+|. ...  
T Consensus        60 ~L~~L~Ls~n-~L~~l---p~~--l~~~L~~L~Ls~N-~l~~ip-~-------~l~~L~~L~Ls~N-~l~~ip~-l~~--  120 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSL---PDN--LPPQITVLEITQN-ALISLP-E-------LPASLEYLDACDN-RLSTLPE-LPA--  120 (571)
T ss_dssp             TCSEEECCSS-CCSCC---CSC--CCTTCSEEECCSS-CCSCCC-C-------CCTTCCEEECCSS-CCSCCCC-CCT--
T ss_pred             CccEEEeCCC-CCCcc---CHh--HcCCCCEEECcCC-CCcccc-c-------ccCCCCEEEccCC-CCCCcch-hhc--
Confidence            7889999885 45554   222  2588999999998 455444 1       3789999999986 5666654 111  


Q ss_pred             cccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653           91 ISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC  170 (272)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c  170 (272)
                                    .|+ .+.+..+.- .   .++.   .+++|+.|++++|.+..+     |.   .+++|++|++.++
T Consensus       121 --------------~L~-~L~Ls~N~l-~---~lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          121 --------------SLK-HLDVDNNQL-T---MLPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNN  170 (571)
T ss_dssp             --------------TCC-EEECCSSCC-S---CCCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSS
T ss_pred             --------------CCC-EEECCCCcC-C---CCCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCC
Confidence                          222 555554432 2   2333   578999999999977652     21   4689999999985


Q ss_pred             cCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653          171 HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE  250 (272)
Q Consensus       171 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  250 (272)
                       .++.+ |.  +.  ++|+.|+++++ .++.++.   .... -....+.|+.|+++++ .++.++...  ..+++|+.|+
T Consensus       171 -~L~~l-p~--l~--~~L~~L~Ls~N-~L~~lp~---~~~~-L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~  236 (571)
T 3cvr_A          171 -QLTFL-PE--LP--ESLEALDVSTN-LLESLPA---VPVR-NHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTII  236 (571)
T ss_dssp             -CCSCC-CC--CC--TTCCEEECCSS-CCSSCCC---CC---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEE
T ss_pred             -CCCCc-ch--hh--CCCCEEECcCC-CCCchhh---HHHh-hhcccccceEEecCCC-cceecCHHH--hcCCCCCEEE
Confidence             46665 53  33  89999999987 5665552   1100 0011133499999886 788888766  5699999999


Q ss_pred             ecCCCCCccccc
Q 045653          251 ATGCDNLKIFGS  262 (272)
Q Consensus       251 i~~c~~l~~l~~  262 (272)
                      +++++--..+|.
T Consensus       237 L~~N~l~~~~p~  248 (571)
T 3cvr_A          237 LEDNPLSSRIRE  248 (571)
T ss_dssp             CCSSSCCHHHHH
T ss_pred             eeCCcCCCcCHH
Confidence            999864333443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.74  E-value=7.5e-08  Score=79.63  Aligned_cols=145  Identities=12%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|+++++ +++.+    +....+++|+.|+++++ .+...+.  ..    .+++|+.|+++++ +++.++....
T Consensus        39 ~l~~L~~L~l~~n-~i~~l----~~l~~l~~L~~L~L~~N-~i~~~~~--l~----~l~~L~~L~L~~N-~l~~l~~~~~  105 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSL----AGMQFFTNLKELHLSHN-QISDLSP--LK----DLTKLEELSVNRN-RLKNLNGIPS  105 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGG--GT----TCSSCCEEECCSS-CCSCCTTCCC
T ss_pred             hcCcCcEEECcCC-Ccccc----hHHhhCCCCCEEECCCC-ccCCChh--hc----cCCCCCEEECCCC-ccCCcCcccc
Confidence            4688999999986 55555    24567899999999998 4444332  11    5899999999986 5555543221


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                                      +.|+ .+++..+.- .   .+ ..+..+++|+.|++++|++..+ +     .+..+++|++|++
T Consensus       106 ----------------~~L~-~L~L~~N~l-~---~~-~~l~~l~~L~~L~Ls~N~i~~~-~-----~l~~l~~L~~L~L  157 (263)
T 1xeu_A          106 ----------------ACLS-RLFLDNNEL-R---DT-DSLIHLKNLEILSIRNNKLKSI-V-----MLGFLSKLEVLDL  157 (263)
T ss_dssp             ----------------SSCC-EEECCSSCC-S---BS-GGGTTCTTCCEEECTTSCCCBC-G-----GGGGCTTCCEEEC
T ss_pred             ----------------Cccc-EEEccCCcc-C---CC-hhhcCcccccEEECCCCcCCCC-h-----HHccCCCCCEEEC
Confidence                            2333 555665532 2   12 2467899999999999987764 1     2457899999999


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCC
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      +++ .+.++   ..+..+++|+.|++.+++
T Consensus       158 ~~N-~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          158 HGN-EITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             CCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence            984 55665   457889999999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.73  E-value=5e-09  Score=80.94  Aligned_cols=92  Identities=15%  Similarity=0.216  Sum_probs=57.2

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhcc----ccCcEEEeecCCCcceeeccCC
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSV----EQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l----~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      .+|+.|++++|.+......    .+..+++|++|++++|..+++- .-..+..+    ++|++|++++|.++++....  
T Consensus        61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII--  133 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH--
T ss_pred             ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH--
Confidence            3678888888754432111    1346788888888888887775 33344442    46888888888777654311  


Q ss_pred             ccccCCccCCCccCeeeccccccccccc
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                        +   +..+++|++|++++|+++++..
T Consensus       134 --~---L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          134 --A---LHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             --H---GGGCTTCCEEEEESCTTCCCHH
T ss_pred             --H---HhcCCCCCEEECCCCCCCCchH
Confidence              1   1224778888888777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.68  E-value=2.1e-08  Score=75.32  Aligned_cols=15  Identities=33%  Similarity=0.804  Sum_probs=7.1

Q ss_pred             HhccccCcEEEeecC
Q 045653          182 IRSVEQLQHLDICLC  196 (272)
Q Consensus       182 ~~~l~~L~~L~i~~c  196 (272)
                      +..+++|++|+++++
T Consensus       109 ~~~l~~L~~L~l~~N  123 (149)
T 2je0_A          109 LKKLENLKSLDLFNC  123 (149)
T ss_dssp             GGGCTTCCEEECTTC
T ss_pred             HhhCCCCCEEeCcCC
Confidence            344444555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.68  E-value=2.6e-07  Score=79.85  Aligned_cols=19  Identities=16%  Similarity=0.123  Sum_probs=11.5

Q ss_pred             ccccCeEEecCCCCcccccc
Q 045653           65 FAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus        65 l~~L~~L~l~~c~~l~~~~~   84 (272)
                      .+.++.|++++. +++.++.
T Consensus        38 ~~~l~~L~Ls~N-~l~~l~~   56 (361)
T 2xot_A           38 PSYTALLDLSHN-NLSRLRA   56 (361)
T ss_dssp             CTTCSEEECCSS-CCCEECT
T ss_pred             CCCCCEEECCCC-CCCccCh
Confidence            456778888764 4554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.66  E-value=2.8e-09  Score=92.97  Aligned_cols=222  Identities=11%  Similarity=0.043  Sum_probs=114.2

Q ss_pred             CCCcceeeecccccccccccc--cccccccCCccEEEEccCc--cceeecCCCc-cc-cce-eccccCeEEecCCCCccc
Q 045653            9 FPLLESLTLHNLINLERICID--RLKVDSFNELKTIKVESCD--EIFAIGGEAD-VV-TEG-IFAQISCLSLGNLPQLTS   81 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~--~l~~~~~~~~-~~-~~~-~l~~L~~L~l~~c~~l~~   81 (272)
                      +++|++|+|+++. +......  ......+++|++|++++|.  .+....+... .. ..+ .+++|+.|+++++. +..
T Consensus        31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~  108 (386)
T 2ca6_A           31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGP  108 (386)
T ss_dssp             CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCT
T ss_pred             CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCH
Confidence            5678888888762 3322110  1123457888888888872  2221100000 00 001 46788888888753 222


Q ss_pred             -----cccCccccccccccccccccccceeecceeeeccCCCCc-ccccccccCCC---------CCccEEEeccccceE
Q 045653           82 -----FCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDT-STTLFNDKVRL---------PKLEALELHEINVEK  146 (272)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~-~~~~~~~~~~l---------~~L~~L~L~~~~l~~  146 (272)
                           ++...              ...+.|+ .+.+..|.-... ...+...+..+         ++|+.|++.+|++..
T Consensus       109 ~~~~~l~~~l--------------~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A          109 TAQEPLIDFL--------------SKHTPLE-HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTHHHHHHHH--------------HHCTTCC-EEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             HHHHHHHHHH--------------HhCCCCC-EEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence                 11110              1123444 555555442110 01122223333         788888888885542


Q ss_pred             eccCCCCCCCCCCCCcCEEEEecCcCCcccc----chHHHhccccCcEEEeecCCCcc-----eeeccCCccccCCccCC
Q 045653          147 IWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF----SASMIRSVEQLQHLDICLCKGLL-----GIISEDTAIQVTPCFVF  217 (272)
Q Consensus       147 i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l~-----~~~~~~~~~~~~~~~~l  217 (272)
                      .....+...+..+++|++|++.+| .+.+..    .+..+..+++|+.|++++|. +.     .++  ..      +..+
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~--~~------l~~~  243 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA--IA------LKSW  243 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH--HH------GGGC
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH--HH------HccC
Confidence            000000012335678888888886 344210    11145678888888888874 42     111  11      2334


Q ss_pred             CccCeeecccccccccc-----cCCCccccCCCcCEEeecCCCCCcc
Q 045653          218 PRVSTLRLIDLPKLRFF-----YPGMHTSEWPTLQSLEATGCDNLKI  259 (272)
Q Consensus       218 ~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~~l~~  259 (272)
                      ++|+.|++++|. ++..     +.......+++|++|++++|. ++.
T Consensus       244 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~  288 (386)
T 2ca6_A          244 PNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL  288 (386)
T ss_dssp             TTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred             CCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence            889999998873 5443     121100237889999999884 443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.64  E-value=8.9e-08  Score=74.09  Aligned_cols=109  Identities=16%  Similarity=0.247  Sum_probs=76.9

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ  210 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  210 (272)
                      .++|+.|++++|++..+  .    .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ .+..++...    
T Consensus        41 ~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~----  107 (176)
T 1a9n_A           41 LDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNN-SLVELGDLD----  107 (176)
T ss_dssp             TTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGG----
T ss_pred             CCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCC-cCCcchhhH----
Confidence            35899999999977774  2    3557899999999884 56666 5455688999999999986 455444211    


Q ss_pred             cCCccCCCccCeeecccccccccccCCC--ccccCCCcCEEeecCCC
Q 045653          211 VTPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLEATGCD  255 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~i~~c~  255 (272)
                        ....+++|+.|+++++ .++.++...  ....++.|+.|++++++
T Consensus       108 --~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          108 --PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             --GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             --hhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence              1334588999999886 555665530  12578899999888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=1.1e-06  Score=74.97  Aligned_cols=102  Identities=14%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCc-EEEeecCCCcceeeccCCcc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQ-HLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~~~~~~~~~  209 (272)
                      +++|+.+++.++++..|...    .|..+++|+++.+.+  .++.+ +...+.++++|+ .+++.+  +++.+.  ... 
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~--~~a-  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAIE--FGA-  292 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEEC--TTT-
T ss_pred             cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEEc--hhh-
Confidence            56777777777766665444    456677777777765  26665 556677777777 777776  555554  211 


Q ss_pred             ccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE  250 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  250 (272)
                          ...+++|+.+.+.+ .+++.++...+ .++++|+.+.
T Consensus       293 ----F~~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly  327 (329)
T 3sb4_A          293 ----FMGCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIY  327 (329)
T ss_dssp             ----TTTCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEE
T ss_pred             ----hhCCccCCEEEeCC-CccCccchhhh-cCCcchhhhc
Confidence                22237777777654 36666665432 4666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.60  E-value=4.4e-09  Score=91.07  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=55.0

Q ss_pred             CccEEEeccccceEeccCCCCCCCCCC-CCcCEEEEecCcCCccccc---hHHHhc-cccCcEEEeecCCCcceeeccCC
Q 045653          133 KLEALELHEINVEKIWRSQVPAKFPRF-QSLTRLVVSNCHKLKYLFS---ASMIRS-VEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       133 ~L~~L~L~~~~l~~i~~~~~~~~~~~l-~~L~~L~i~~c~~l~~l~~---~~~~~~-l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +|+.|++++|++.......+...+..+ ++|++|++.++. +.+...   ...+.. .++|++|+++++ .+.......-
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  245 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL  245 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence            666666666654432111100011223 367777776643 444100   012222 346777777765 2433221000


Q ss_pred             ccccCCccCCCccCeeeccccc-------ccccccCCCccccCCCcCEEeecCCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLP-------KLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~-------~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      .   .....+++|+.|+++++.       .+..+....  ..++.|+.|++++++
T Consensus       246 ~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          246 K---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE  295 (362)
T ss_dssp             H---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred             H---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence            0   112334778888887764       122333333  456677777777664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.58  E-value=4.4e-09  Score=91.04  Aligned_cols=226  Identities=13%  Similarity=0.003  Sum_probs=121.7

Q ss_pred             CCcceeeeccccccccccccc--ccccccC-CccEEEEccCccceeecCCCccccce-e-ccccCeEEecCCCCcccccc
Q 045653           10 PLLESLTLHNLINLERICIDR--LKVDSFN-ELKTIKVESCDEIFAIGGEADVVTEG-I-FAQISCLSLGNLPQLTSFCR   84 (272)
Q Consensus        10 ~~L~~L~L~~~~~l~~~~~~~--~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~-~-l~~L~~L~l~~c~~l~~~~~   84 (272)
                      .+|++|+++++. +++.....  .....++ +|++|++++| .+.......... -+ . +++|++|+++++. +.....
T Consensus        22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~-l~~~~~   97 (362)
T 3goz_A           22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQ-ILAAIPANVTSLNLSGNF-LSYKSS   97 (362)
T ss_dssp             TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHH-HHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred             CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHH-HHhccCCCccEEECcCCc-CChHHH
Confidence            459999999865 44441100  2233466 8999999998 444322211110 00 1 2899999999874 443221


Q ss_pred             Ccccccccccccccccccc-ceeecceeeeccCCCCccc-ccccccCCC-CCccEEEeccccceEeccCCCCCCCCCCC-
Q 045653           85 EVKRHSISSNTKDSQDQSM-TAITCSYEVNLEDKLDTST-TLFNDKVRL-PKLEALELHEINVEKIWRSQVPAKFPRFQ-  160 (272)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~i~~~~~~~~~~-~~~~~~~~l-~~L~~L~L~~~~l~~i~~~~~~~~~~~l~-  160 (272)
                      ......         .... +.|+ .+++..+.-..... .+...+..+ ++|+.|++++|++.......++..+..++ 
T Consensus        98 ~~l~~~---------l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  167 (362)
T 3goz_A           98 DELVKT---------LAAIPFTIT-VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA  167 (362)
T ss_dssp             HHHHHH---------HHTSCTTCC-EEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred             HHHHHH---------HHhCCCCcc-EEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence            100000         0001 3444 66666554221111 122223443 59999999999666322111111122344 


Q ss_pred             CcCEEEEecCcCCccccch---HHHhcc-ccCcEEEeecCCCcceeeccCCccccCCccC-CCccCeeeccccccccccc
Q 045653          161 SLTRLVVSNCHKLKYLFSA---SMIRSV-EQLQHLDICLCKGLLGIISEDTAIQVTPCFV-FPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       161 ~L~~L~i~~c~~l~~l~~~---~~~~~l-~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~-l~~L~~L~l~~c~~l~~~~  235 (272)
                      +|++|++.+| .+++..+.   ..+... ++|++|++++|. +....... ..  ..... .++|+.|+++++ .+++..
T Consensus       168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~-l~--~~l~~~~~~L~~L~Ls~N-~l~~~~  241 (362)
T 3goz_A          168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE-LA--YIFSSIPNHVVSLNLCLN-CLHGPS  241 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH-HH--HHHHHSCTTCCEEECCSS-CCCCCC
T ss_pred             cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH-HH--HHHhcCCCCceEEECcCC-CCCcHH
Confidence            9999999986 45555221   133445 599999999874 44321100 00  00111 258999999986 565543


Q ss_pred             CC---CccccCCCcCEEeecCCC
Q 045653          236 PG---MHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       236 ~~---~~~~~~~~L~~L~i~~c~  255 (272)
                      ..   .....++.|++|++++|.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHHHhcCCCccEEEeccCC
Confidence            31   112567889999999885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.56  E-value=5.8e-08  Score=74.94  Aligned_cols=94  Identities=6%  Similarity=0.053  Sum_probs=69.8

Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCcc-CCCccCeeecccccccccccCC
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCF-VFPRVSTLRLIDLPKLRFFYPG  237 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~  237 (272)
                      -.+|++|++++|. +++. ....+..+++|++|++++|..+++...    .+..... ..++|++|++++|.++++-...
T Consensus        60 ~~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL----~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           60 KYKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL----ERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CCCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH----HHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             CceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH----HHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            3579999999997 7776 445567899999999999987765431    1110000 0157999999999999887664


Q ss_pred             CccccCCCcCEEeecCCCCCcc
Q 045653          238 MHTSEWPTLQSLEATGCDNLKI  259 (272)
Q Consensus       238 ~~~~~~~~L~~L~i~~c~~l~~  259 (272)
                      .. ..+++|++|++++|++++.
T Consensus       134 ~L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 AL-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HG-GGCTTCCEEEEESCTTCCC
T ss_pred             HH-hcCCCCCEEECCCCCCCCc
Confidence            44 4689999999999998875

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.55  E-value=1.1e-09  Score=97.68  Aligned_cols=41  Identities=17%  Similarity=0.012  Sum_probs=24.3

Q ss_pred             CCccCeeecccccccccccCCC----ccccCCCcCEEeecCCCCCcc
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGM----HTSEWPTLQSLEATGCDNLKI  259 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~----~~~~~~~L~~L~i~~c~~l~~  259 (272)
                      +++|++|+++++ .+++.....    ....++.|++|++++| +++.
T Consensus       226 ~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~  270 (461)
T 1z7x_W          226 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITA  270 (461)
T ss_dssp             CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCH
T ss_pred             CCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCH
Confidence            477777777776 444432110    1124678888888887 4554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.51  E-value=3.3e-09  Score=94.49  Aligned_cols=66  Identities=14%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             CCCCcceeeecccccccccccccccccccC----CccEEEEccCccceeecCCCccccce-eccccCeEEecCCC
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFN----ELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLP   77 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~----~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~   77 (272)
                      .+++|++|+++++. +.+... ......++    +|++|++++|. +...+.... ...+ .+++|++|+++++.
T Consensus        54 ~~~~L~~L~Ls~n~-l~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l-~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           54 VNPALAELNLRSNE-LGDVGV-HCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL-SSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             TCTTCCEEECTTCC-CHHHHH-HHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH-HHHTTSCTTCCEEECCSSB
T ss_pred             hCCCcCEEeCCCCc-CChHHH-HHHHHHHhhCCCceeEEEccCCC-CCHHHHHHH-HHHHccCCceeEEECCCCc
Confidence            35889999998854 333211 01111233    69999999884 332110000 0111 57888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.45  E-value=8.6e-07  Score=68.44  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ  210 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  210 (272)
                      .++|+.|++.++++..+.+.    .+..+++|++|++.++ .++.+ +...+..+++|+.|+++++ .++.++..     
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~-----   94 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPNG-----   94 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-----
T ss_pred             CCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC-CccccCHH-----
Confidence            36888888888876653322    3456788888888874 56665 5455677888888888876 45544411     


Q ss_pred             cCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          211 VTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                        ....+++|+.|+++++ .++.++.... ..+++|++|++.+++
T Consensus        95 --~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           95 --VFDKLTQLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP  135 (177)
T ss_dssp             --TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             --HhhCCcccCEEECcCC-cceEeCHHHh-cCCcccCEEEecCCC
Confidence              1223588888888875 6776665431 467888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.41  E-value=8e-07  Score=68.64  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccch-HHHhccccCcEEEeecC
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSA-SMIRSVEQLQHLDICLC  196 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c  196 (272)
                      ..+++|+.|++++|++..+.+.    .+..+++|++|++.++ .+..+ +. ..+..+++|+.|++.++
T Consensus        61 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~-~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           61 PLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNN-SLVEL-GDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             CCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSC-CCCCG-GGGGGGGGCTTCCEEECCSS
T ss_pred             ccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCC-cCCcc-hhhHhhhcCCCCCEEEecCC
Confidence            3456666666666655543211    1234566666666653 33444 21 23455666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=2.4e-06  Score=72.76  Aligned_cols=90  Identities=19%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             CCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccC-eeecccccccccccCC
Q 045653          159 FQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVS-TLRLIDLPKLRFFYPG  237 (272)
Q Consensus       159 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~  237 (272)
                      +++|+++++.+ .+++.+ +...+.++++|+++++.+  +++.+.  ...     ...+++|+ .+.+.+  +++.+...
T Consensus       225 ~~~L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~--~~a-----F~~~~~L~~~l~l~~--~l~~I~~~  291 (329)
T 3sb4_A          225 MPNLVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPH--NLKTIG--QRV-----FSNCGRLAGTLELPA--SVTAIEFG  291 (329)
T ss_dssp             CTTCCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TTT-----TTTCTTCCEEEEECT--TCCEECTT
T ss_pred             cCCCeEEECCC-CCccee-cHhhhhCCCCCCEEECCc--ccceeh--HHH-----hhCChhccEEEEEcc--cceEEchh
Confidence            56777777775 235666 656677788888888876  365554  222     22347888 888876  77777765


Q ss_pred             CccccCCCcCEEeecCCCCCcccccc
Q 045653          238 MHTSEWPTLQSLEATGCDNLKIFGSE  263 (272)
Q Consensus       238 ~~~~~~~~L~~L~i~~c~~l~~l~~~  263 (272)
                      .+ .+|++|+.+++.+. +++.++..
T Consensus       292 aF-~~c~~L~~l~l~~n-~i~~I~~~  315 (329)
T 3sb4_A          292 AF-MGCDNLRYVLATGD-KITTLGDE  315 (329)
T ss_dssp             TT-TTCTTEEEEEECSS-CCCEECTT
T ss_pred             hh-hCCccCCEEEeCCC-ccCccchh
Confidence            43 58888999987543 46666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.38  E-value=2.9e-06  Score=66.64  Aligned_cols=124  Identities=13%  Similarity=0.179  Sum_probs=80.6

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccc
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSIS   92 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~   92 (272)
                      +.+++++ .+++.+   +.  +..++|++|++.++ .+...+. ...    .+++|+.|++++. .++.++.        
T Consensus        13 ~~l~~~~-~~l~~i---p~--~~~~~l~~L~L~~n-~i~~ip~-~~~----~l~~L~~L~Ls~N-~i~~i~~--------   71 (193)
T 2wfh_A           13 TVVRCSN-KGLKVL---PK--GIPRDVTELYLDGN-QFTLVPK-ELS----NYKHLTLIDLSNN-RISTLSN--------   71 (193)
T ss_dssp             TEEECTT-SCCSSC---CS--CCCTTCCEEECCSS-CCCSCCG-GGG----GCTTCCEEECCSS-CCCCCCT--------
T ss_pred             CEEEcCC-CCCCcC---CC--CCCCCCCEEECCCC-cCchhHH-Hhh----cccCCCEEECCCC-cCCEeCH--------
Confidence            4566655 344444   11  23578999999987 3443321 111    5789999999874 3333221        


Q ss_pred             cccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcC
Q 045653           93 SNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHK  172 (272)
Q Consensus        93 ~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~  172 (272)
                                                       ..+..+++|+.|+++++++..+.+.    .+..+++|++|++.+ +.
T Consensus        72 ---------------------------------~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~-N~  113 (193)
T 2wfh_A           72 ---------------------------------QSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHG-ND  113 (193)
T ss_dssp             ---------------------------------TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCS-SC
T ss_pred             ---------------------------------hHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCC-CC
Confidence                                             2245678888999988877765433    355788899998888 45


Q ss_pred             CccccchHHHhccccCcEEEeecC
Q 045653          173 LKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       173 l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      ++.+ +...+..+++|+.|++.+.
T Consensus       114 l~~~-~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          114 ISVV-PEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CCBC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCee-ChhhhhcCccccEEEeCCC
Confidence            6666 5556777888888888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.36  E-value=1.4e-06  Score=68.40  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=50.3

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV  211 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  211 (272)
                      ++|+.|++.++++..+.     ..+..+++|++|++.+ +.++.+ +...+.++++|+.|+++++ .++.+...      
T Consensus        31 ~~l~~L~L~~n~i~~ip-----~~~~~l~~L~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N-~l~~i~~~------   96 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-----KELSNYKHLTLIDLSN-NRISTL-SNQSFSNMTQLLTLILSYN-RLRCIPPR------   96 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-----GGGGGCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTT------
T ss_pred             CCCCEEECCCCcCchhH-----HHhhcccCCCEEECCC-CcCCEe-CHhHccCCCCCCEEECCCC-ccCEeCHH------
Confidence            45556666555444321     1233455566666555 334444 3334455556666666554 24333311      


Q ss_pred             CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          212 TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       212 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                       ....+++|+.|++++. .++.++...+ ..+++|++|++.+.
T Consensus        97 -~f~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           97 -TFDGLKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGAN  136 (193)
T ss_dssp             -TTTTCTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSS
T ss_pred             -HhCCCCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCC
Confidence             1222355666666553 4544444321 34555666655543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.35  E-value=5e-06  Score=65.10  Aligned_cols=126  Identities=16%  Similarity=0.161  Sum_probs=80.7

Q ss_pred             ceeeecccccccccccccccccccCCccEEEEccCccceeecCC-CccccceeccccCeEEecCCCCccccccCcccccc
Q 045653           13 ESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGE-ADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSI   91 (272)
Q Consensus        13 ~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~   91 (272)
                      +++++++ .+++.+   +.  ...++|++|++.++ ++...... ...    .+++|+.|+++++ .++.+.        
T Consensus        11 ~~l~~s~-~~l~~i---p~--~~~~~l~~L~l~~n-~i~~~~~~~~~~----~l~~L~~L~Ls~N-~l~~~~--------   70 (192)
T 1w8a_A           11 TTVDCTG-RGLKEI---PR--DIPLHTTELLLNDN-ELGRISSDGLFG----RLPHLVKLELKRN-QLTGIE--------   70 (192)
T ss_dssp             TEEECTT-SCCSSC---CS--CCCTTCSEEECCSC-CCCSBCCSCSGG----GCTTCCEEECCSS-CCCCBC--------
T ss_pred             CEEEcCC-CCcCcC---cc--CCCCCCCEEECCCC-cCCccCCccccc----cCCCCCEEECCCC-CCCCcC--------
Confidence            5677766 345555   22  22458999999987 44443322 112    5789999999874 333321        


Q ss_pred             ccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc
Q 045653           92 SSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH  171 (272)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~  171 (272)
                                                       +..+..+++|+.|+++++++..+.+.    .+..+++|++|++.+ +
T Consensus        71 ---------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~-N  112 (192)
T 1w8a_A           71 ---------------------------------PNAFEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYD-N  112 (192)
T ss_dssp             ---------------------------------TTTTTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCS-S
T ss_pred             ---------------------------------HhHcCCcccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCC-C
Confidence                                             22345678888888888877775443    355678888888887 3


Q ss_pred             CCccccchHHHhccccCcEEEeecCC
Q 045653          172 KLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       172 ~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      .++.+ ++..+..+++|+.|++.+.+
T Consensus       113 ~l~~~-~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          113 QISCV-MPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEE-CTTSSTTCTTCCEEECTTCC
T ss_pred             cCCee-CHHHhhcCCCCCEEEeCCCC
Confidence            55555 33456778888888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.35  E-value=2.1e-06  Score=67.35  Aligned_cols=106  Identities=18%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             CccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccC
Q 045653          133 KLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVT  212 (272)
Q Consensus       133 ~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~  212 (272)
                      +|+.|++.++++..+.+..   .+..+++|++|++.+ +.++.+ .+..+..+++|+.|+++++ .++.+...       
T Consensus        30 ~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------   96 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDG---LFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGEN-KIKEISNK-------   96 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSS-------
T ss_pred             CCCEEECCCCcCCccCCcc---ccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEECCCC-cCCccCHH-------
Confidence            4555555555443322110   123445555555554 233333 2233445555555555543 23333311       


Q ss_pred             CccCCCccCeeecccccccccccC-CCccccCCCcCEEeecCC
Q 045653          213 PCFVFPRVSTLRLIDLPKLRFFYP-GMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       213 ~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~L~~L~i~~c  254 (272)
                      ....+++|+.|++++. +++.+.. .+  ..+++|++|++++.
T Consensus        97 ~~~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDN-QISCVMPGSF--EHLNSLTSLNLASN  136 (192)
T ss_dssp             SSTTCTTCCEEECCSS-CCCEECTTSS--TTCTTCCEEECTTC
T ss_pred             HhcCCCCCCEEECCCC-cCCeeCHHHh--hcCCCCCEEEeCCC
Confidence            0112355555555543 3333322 22  34455555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.34  E-value=5.7e-06  Score=75.77  Aligned_cols=162  Identities=19%  Similarity=0.166  Sum_probs=104.7

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      ++...+++|++|+++++ +++.+   +   +.+++|+.|+++++ ++..++.  .      ..+|+.|+++++ .++.+|
T Consensus        74 lp~~l~~~L~~L~Ls~N-~l~~i---p---~~l~~L~~L~Ls~N-~l~~ip~--l------~~~L~~L~Ls~N-~l~~lp  136 (571)
T 3cvr_A           74 LPDNLPPQITVLEITQN-ALISL---P---ELPASLEYLDACDN-RLSTLPE--L------PASLKHLDVDNN-QLTMLP  136 (571)
T ss_dssp             CCSCCCTTCSEEECCSS-CCSCC---C---CCCTTCCEEECCSS-CCSCCCC--C------CTTCCEEECCSS-CCSCCC
T ss_pred             cCHhHcCCCCEEECcCC-CCccc---c---cccCCCCEEEccCC-CCCCcch--h------hcCCCEEECCCC-cCCCCC
Confidence            45556788999999985 45544   2   45899999999998 4554333  1      238999999985 566555


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcC
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      .  .               .+.|+ .+++..+.- .   .++.   .+++|+.|++.+|++..+     |. +.  ++|+
T Consensus       137 ~--~---------------l~~L~-~L~Ls~N~l-~---~lp~---~l~~L~~L~Ls~N~L~~l-----p~-l~--~~L~  183 (571)
T 3cvr_A          137 E--L---------------PALLE-YINADNNQL-T---MLPE---LPTSLEVLSVRNNQLTFL-----PE-LP--ESLE  183 (571)
T ss_dssp             C--C---------------CTTCC-EEECCSSCC-S---CCCC---CCTTCCEEECCSSCCSCC-----CC-CC--TTCC
T ss_pred             C--c---------------Ccccc-EEeCCCCcc-C---cCCC---cCCCcCEEECCCCCCCCc-----ch-hh--CCCC
Confidence            4  1               23333 555554432 1   2333   468999999999977652     22 22  8899


Q ss_pred             EEEEecCcCCccccchHHHhccccC-------cEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccc
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQL-------QHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPK  230 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L-------~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  230 (272)
                      +|++.++ .++.+ |.  +..  +|       +.|+++++ .++.++  ...      ..+++|+.|++++++-
T Consensus       184 ~L~Ls~N-~L~~l-p~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp--~~l------~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          184 ALDVSTN-LLESL-PA--VPV--RNHHSEETEIFFRCREN-RITHIP--ENI------LSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEECCSS-CCSSC-CC--CC----------CCEEEECCSS-CCCCCC--GGG------GGSCTTEEEECCSSSC
T ss_pred             EEECcCC-CCCch-hh--HHH--hhhcccccceEEecCCC-cceecC--HHH------hcCCCCCEEEeeCCcC
Confidence            9999884 56665 43  222  55       99999886 566655  222      2258899999988743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.34  E-value=2.5e-06  Score=65.80  Aligned_cols=62  Identities=23%  Similarity=0.333  Sum_probs=34.3

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      ..+++|+.|++.++++..+.+.    .+..+++|++|++.++ .++.+ +...+..+++|++|++.++
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNG----VFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCCCccCEEECCCCCccccCHH----HhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCC
Confidence            3456666666666655542222    2345666666666653 44444 4334455666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.16  E-value=2.3e-06  Score=80.77  Aligned_cols=110  Identities=19%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeecc
Q 045653          126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      ..+..+++|+.|+|++|.+..+..     .+..+++|++|++.++ .++.+ | ..+..+++|+.|+++++. ++.++  
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~~l~~L~~L~Ls~N-~l~~l-p-~~~~~l~~L~~L~Ls~N~-l~~lp--  286 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISA-----NIFKYDFLTRLYLNGN-SLTEL-P-AEIKNLSNLRVLDLSHNR-LTSLP--  286 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCG-----GGGGCCSCSCCBCTTS-CCSCC-C-GGGGGGTTCCEEECTTSC-CSSCC--
T ss_pred             hhhccCCCCcEEECCCCCCCCCCh-----hhcCCCCCCEEEeeCC-cCccc-C-hhhhCCCCCCEEeCcCCc-CCccC--
Confidence            345678899999999997765322     2337899999999985 55655 5 457889999999999874 66554  


Q ss_pred             CCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ..      +..+++|+.|+++++ .++.++..+  ..+++|+.|++++++
T Consensus       287 ~~------~~~l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          287 AE------LGSCFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SS------GGGGTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSC
T ss_pred             hh------hcCCCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCc
Confidence            22      234589999999886 788888776  789999999999885

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=9.7e-06  Score=74.29  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=52.7

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++++|++..+     |..+..+++|+.|++.+ +.++.+ |  .+..+++|+.|+++++ .++.+.....
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~-N~l~~l-p--~l~~l~~L~~L~Ls~N-~l~~~~~p~~  528 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRAL-----PPALAALRCLEVLQASD-NALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQP  528 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCCC-----CGGGGGCTTCCEEECCS-SCCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTGG
T ss_pred             ccccccCcEeecCccccccc-----chhhhcCCCCCEEECCC-CCCCCC-c--ccCCCCCCcEEECCCC-CCCCCCCcHH
Confidence            45566666666666655532     22344566666666665 344444 3  4556666666666654 3433310011


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCC--ccccCCCcCEEe
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGM--HTSEWPTLQSLE  250 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~L~~L~  250 (272)
                            +..+++|+.|+++++ .++..+...  ....+|+|+.|+
T Consensus       529 ------l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          529 ------LVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             ------GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             ------HhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence                  223466666666654 444444322  112355555553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.05  E-value=1.5e-05  Score=61.10  Aligned_cols=84  Identities=23%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccc
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQ  210 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  210 (272)
                      .++|+.|++.++++..+.+.    .+..+++|++|++.+ ++++.+ +...+..+++|+.|+++++ .++.++.  .   
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N-~l~~~~~--~---   96 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDN-QLKSIPR--G---   96 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T---
T ss_pred             CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCC-ccCEeCH--H---
Confidence            36788888888877764333    355778888888887 456666 5555677888888888875 4655542  1   


Q ss_pred             cCCccCCCccCeeecccc
Q 045653          211 VTPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       211 ~~~~~~l~~L~~L~l~~c  228 (272)
                        ....+++|+.|++++.
T Consensus        97 --~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           97 --AFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             --TTTTCTTCCEEECCSS
T ss_pred             --HhcCCCCCCEEEeCCC
Confidence              1233578888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.02  E-value=2e-05  Score=60.76  Aligned_cols=83  Identities=18%  Similarity=0.212  Sum_probs=59.2

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV  211 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  211 (272)
                      ++|+.|+++++++..+.+.    .+..+++|++|++.+ ++++.+ +...+..+++|+.|+++++ .+..++.  .    
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N-~l~~l~~--~----   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDN-HLKSIPR--G----   99 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT--T----
T ss_pred             CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCC-ccceeCH--H----
Confidence            7888999988877764333    456788899999888 467776 5555678888999988875 4655542  1    


Q ss_pred             CCccCCCccCeeecccc
Q 045653          212 TPCFVFPRVSTLRLIDL  228 (272)
Q Consensus       212 ~~~~~l~~L~~L~l~~c  228 (272)
                       .+..+++|+.|++.+.
T Consensus       100 -~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A          100 -AFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             -TTTTCTTCSEEECCSS
T ss_pred             -HhccccCCCEEEeCCC
Confidence             1233588888888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.98  E-value=0.00094  Score=58.37  Aligned_cols=86  Identities=8%  Similarity=0.033  Sum_probs=47.1

Q ss_pred             CCCCCCCcCEEEEecCcC----CccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccc
Q 045653          155 KFPRFQSLTRLVVSNCHK----LKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPK  230 (272)
Q Consensus       155 ~~~~l~~L~~L~i~~c~~----l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  230 (272)
                      .|..+++|+.+.+.+...    ...+ +...+.++++|+.+.+.+  +++.+.  ...     ...+++|+.+.+..  +
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~--~~a-----F~~c~~L~~l~lp~--~  333 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILG--QGL-----LGGNRKVTQLTIPA--N  333 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEEC--TTT-----TTTCCSCCEEEECT--T
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEh--hhh-----hcCCCCccEEEECc--c
Confidence            355666666666654211    1123 444556666666666653  344444  111     22237777777743  4


Q ss_pred             cccccCCCccccCCCcCEEeecCC
Q 045653          231 LRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       231 l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                      ++.+...++ .++ +|+.+.+.+.
T Consensus       334 l~~I~~~aF-~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          334 VTQINFSAF-NNT-GIKEVKVEGT  355 (401)
T ss_dssp             CCEECTTSS-SSS-CCCEEEECCS
T ss_pred             ccEEcHHhC-CCC-CCCEEEEcCC
Confidence            666655443 456 7888887765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.94  E-value=3.9e-05  Score=58.76  Aligned_cols=64  Identities=20%  Similarity=0.296  Sum_probs=49.6

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      .+..+++|+.|+++++++..+.+.    .+..+++|++|++.+ +.++.+ +...+..+++|+.|++.+.
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           49 VFDRLTQLTRLDLDNNQLTVLPAG----VFDKLTQLTQLSLND-NQLKSI-PRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             hhcCcccCCEEECCCCCcCccChh----hccCCCCCCEEECCC-CccCEe-CHHHhcCCCCCCEEEeCCC
Confidence            356788999999999987764333    356789999999988 467776 5556788999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=2e-05  Score=72.24  Aligned_cols=110  Identities=18%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV  211 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  211 (272)
                      ..|+.|++++|++..+     |. +..+++|+.|++.++ .++.+ |. .+..+++|+.|+++++ .++.++   .    
T Consensus       441 ~~L~~L~Ls~n~l~~l-----p~-~~~l~~L~~L~Ls~N-~l~~l-p~-~~~~l~~L~~L~Ls~N-~l~~lp---~----  503 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVL-----CH-LEQLLLVTHLDLSHN-RLRAL-PP-ALAALRCLEVLQASDN-ALENVD---G----  503 (567)
T ss_dssp             TTCSEEECTTSCCSSC-----CC-GGGGTTCCEEECCSS-CCCCC-CG-GGGGCTTCCEEECCSS-CCCCCG---G----
T ss_pred             cCceEEEecCCCCCCC-----cC-ccccccCcEeecCcc-ccccc-ch-hhhcCCCCCEEECCCC-CCCCCc---c----
Confidence            3689999999977753     32 557899999999984 56666 53 6889999999999986 465543   1    


Q ss_pred             CCccCCCccCeeecccccccccc--cCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          212 TPCFVFPRVSTLRLIDLPKLRFF--YPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       212 ~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                        +..+++|+.|+++++ +++.+  +..+  ..+++|+.|++++++ ++.+|+..
T Consensus       504 --l~~l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~~~~  552 (567)
T 1dce_A          504 --VANLPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEEGIQ  552 (567)
T ss_dssp             --GTTCSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSSSCT
T ss_pred             --cCCCCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCccHH
Confidence              334699999999986 77777  4555  689999999999884 66666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.90  E-value=5.1e-05  Score=58.36  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      .+..+++|+.|+++++++..+.+.    .+..+++|++|++.+ +.+..+ +...+..+++|+.|++.+++
T Consensus        52 ~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~-N~l~~l-~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           52 VFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLND-NHLKSI-PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred             HhcCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCC-Ccccee-CHHHhccccCCCEEEeCCCC
Confidence            356788999999999988764332    355789999999988 566776 55567889999999998863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.87  E-value=9.5e-07  Score=69.57  Aligned_cols=107  Identities=19%  Similarity=0.150  Sum_probs=70.8

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.+|++..+     |..+..+++|++|++.++ .++.+ +  .+..+++|+.|++.++ .++.+.... 
T Consensus        66 ~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~~~-  134 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYN-QIASL-S--GIEKLVNLRVLYMSNN-KITNWGEID-  134 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEE-ECCCH-H--HHHHHHHSSEEEESEE-ECCCHHHHH-
T ss_pred             cccCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCC-cCCcC-C--ccccCCCCCEEECCCC-cCCchhHHH-
Confidence            35578999999999976642     223335689999999985 56665 3  5788999999999986 354433111 


Q ss_pred             ccccCCccCCCccCeeecccccccccccCC--------CccccCCCcCEEe
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--------MHTSEWPTLQSLE  250 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--------~~~~~~~~L~~L~  250 (272)
                           ....+++|+.|++.+++--...+..        .....+++|+.|+
T Consensus       135 -----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          135 -----KLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -----HHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             -----HHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                 1233589999999887433322221        0125688888887

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.86  E-value=0.00094  Score=58.38  Aligned_cols=109  Identities=10%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             cccCCCCCccEEEeccccce-----EeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcc
Q 045653          126 NDKVRLPKLEALELHEINVE-----KIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLL  200 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~-----~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~  200 (272)
                      ..+..+++|+.+.+.++.+.     .+...    .|..+++|+.+.+.+  .++.+ +...+.++++|+.+.+..  +++
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~--~i~~I-~~~aF~~c~~L~~l~lp~--~l~  335 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPE--SIRIL-GQGLLGGNRKVTQLTIPA--NVT  335 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCT--TCCEE-CTTTTTTCCSCCEEEECT--TCC
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCC--ceEEE-hhhhhcCCCCccEEEECc--ccc
Confidence            35678899999999887332     33333    577899999999984  57777 667888999999999965  466


Q ss_pred             eeeccCCccccCCccCCCccCeeecccccccccccCCCccccCC-CcCEEeecC
Q 045653          201 GIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWP-TLQSLEATG  253 (272)
Q Consensus       201 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~i~~  253 (272)
                      .+.  ...     .... +|+.+.+.+. .+..+..... .+++ .++.|.+..
T Consensus       336 ~I~--~~a-----F~~~-~L~~l~l~~n-~~~~l~~~~F-~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          336 QIN--FSA-----FNNT-GIKEVKVEGT-TPPQVFEKVW-YGFPDDITVIRVPA  379 (401)
T ss_dssp             EEC--TTS-----SSSS-CCCEEEECCS-SCCBCCCSSC-CCSCTTCCEEEECG
T ss_pred             EEc--HHh-----CCCC-CCCEEEEcCC-CCcccccccc-cCCCCCccEEEeCH
Confidence            665  222     2224 8999999774 5555555432 3453 677777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=1.4e-05  Score=69.07  Aligned_cols=43  Identities=12%  Similarity=0.055  Sum_probs=21.8

Q ss_pred             cccCCccEEEEccCccc-eeecC-CCccccce--eccccCeEEecCC
Q 045653           34 DSFNELKTIKVESCDEI-FAIGG-EADVVTEG--IFAQISCLSLGNL   76 (272)
Q Consensus        34 ~~~~~L~~L~l~~c~~l-~~~~~-~~~~~~~~--~l~~L~~L~l~~c   76 (272)
                      ..+++|+.|.+.+...- ....+ +......+  .+|+|+.|.++++
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT  182 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence            45788888888653110 00000 00011122  5688888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.82  E-value=1.6e-05  Score=75.02  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=66.7

Q ss_pred             eccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEecccc
Q 045653           64 IFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEIN  143 (272)
Q Consensus        64 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  143 (272)
                      .++.|+.|+++++. +..++.....              ++.|+ .+.+..+.- .   .++..+..+++|+.|+|++|+
T Consensus       222 ~l~~L~~L~Ls~n~-l~~l~~~~~~--------------l~~L~-~L~Ls~N~l-~---~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          222 DDQLWHALDLSNLQ-IFNISANIFK--------------YDFLT-RLYLNGNSL-T---ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             CCCCCCEEECTTSC-CSCCCGGGGG--------------CCSCS-CCBCTTSCC-S---CCCGGGGGGTTCCEEECTTSC
T ss_pred             cCCCCcEEECCCCC-CCCCChhhcC--------------CCCCC-EEEeeCCcC-c---ccChhhhCCCCCCEEeCcCCc
Confidence            46778888887753 4444432211              23333 444444322 1   355556778888888888887


Q ss_pred             ceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCC
Q 045653          144 VEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCK  197 (272)
Q Consensus       144 l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  197 (272)
                      +..+     |..+..+++|++|++.++ .++.+ |.. +..+++|+.|+++++.
T Consensus       282 l~~l-----p~~~~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          282 LTSL-----PAELGSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CSSC-----CSSGGGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSC
T ss_pred             CCcc-----ChhhcCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCc
Confidence            6642     334557888888888875 55665 543 7778888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.80  E-value=7.8e-07  Score=70.08  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=81.6

Q ss_pred             cccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceee
Q 045653          124 LFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGII  203 (272)
Q Consensus       124 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~  203 (272)
                      ++..+..+++|+.|++++|++..+     | .+..+++|++|++.++ .+..+ + .....+++|+.|+++++ .+..++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l-----~-~~~~l~~L~~L~l~~n-~l~~l-~-~~~~~~~~L~~L~L~~N-~l~~l~  109 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKI-----S-SLSGMENLRILSLGRN-LIKKI-E-NLDAVADTLEELWISYN-QIASLS  109 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCC-----C-CHHHHTTCCEEEEEEE-EECSC-S-SHHHHHHHCSEEEEEEE-ECCCHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCccc-----c-ccccCCCCCEEECCCC-Ccccc-c-chhhcCCcCCEEECcCC-cCCcCC
Confidence            333557789999999999977662     2 3557899999999985 45565 4 35667899999999997 465543


Q ss_pred             ccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          204 SEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       204 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                         .      ...+++|+.|+++++ .++.++.......+++|++|++.+++
T Consensus       110 ---~------~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          110 ---G------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ---H------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             ---c------cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence               1      233589999999986 56665431112578999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.75  E-value=0.0001  Score=62.88  Aligned_cols=91  Identities=14%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             ccccccCCCCCccEEEecc-ccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcce
Q 045653          123 TLFNDKVRLPKLEALELHE-INVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLG  201 (272)
Q Consensus       123 ~~~~~~~~l~~L~~L~L~~-~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~  201 (272)
                      .+|. +..+++|+.|+|++ +++..+.+.    .+..+++|++|++.++ .+..+ ++..+.++++|+.|+++++ ++..
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~   94 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKS-GLRFV-APDAFHFTPRLSRLNLSFN-ALES   94 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSS-CCCEE-CTTGGGSCSCCCEEECCSS-CCSC
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCC-cccee-CHHHhcCCcCCCEEeCCCC-ccce
Confidence            5666 77888999999997 788876544    4668999999999984 67877 5567889999999999985 5766


Q ss_pred             eeccCCccccCCccCCCccCeeeccccc
Q 045653          202 IISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      ++.  .....      ..|+.|++.+.+
T Consensus        95 ~~~--~~~~~------~~L~~l~l~~N~  114 (347)
T 2ifg_A           95 LSW--KTVQG------LSLQELVLSGNP  114 (347)
T ss_dssp             CCS--TTTCS------CCCCEEECCSSC
T ss_pred             eCH--HHccc------CCceEEEeeCCC
Confidence            652  21111      238899887653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.70  E-value=3.2e-05  Score=66.75  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             CCCCcceeeecccccccc----ccc---ccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCC
Q 045653            8 AFPLLESLTLHNLINLER----ICI---DRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLP   77 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~----~~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~   77 (272)
                      .|++|++|.+.+.. .+.    +..   .......+|+|++|.++++..+.. ..       +..++|++|.+..|.
T Consensus       137 ~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~~-------~~~~~L~~L~L~~~~  204 (362)
T 2ra8_A          137 KFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-GK-------KPRPNLKSLEIISGG  204 (362)
T ss_dssp             HHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-CS-------CBCTTCSEEEEECSB
T ss_pred             hcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-cc-------ccCCCCcEEEEecCC
Confidence            57899999986532 110    100   012234579999999998843321 11       136899999998653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.64  E-value=0.00016  Score=61.64  Aligned_cols=91  Identities=26%  Similarity=0.293  Sum_probs=69.5

Q ss_pred             CCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccc
Q 045653          152 VPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKL  231 (272)
Q Consensus       152 ~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  231 (272)
                      +|. +..+++|++|++.+.+.+..+ +...+.++++|+.|+++++ +++.++..  .     +..+++|+.|++++. ++
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~--~-----~~~l~~L~~L~l~~N-~l   92 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPD--A-----FHFTPRLSRLNLSFN-AL   92 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTT--G-----GGSCSCCCEEECCSS-CC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCC-ccceeCHH--H-----hcCCcCCCEEeCCCC-cc
Confidence            344 557899999999987888888 6667889999999999996 58777621  1     233699999999985 78


Q ss_pred             ccccCCCccccCCCcCEEeecCCC
Q 045653          232 RFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       232 ~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      +.++.... ..++ |+.|++.+.+
T Consensus        93 ~~~~~~~~-~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           93 ESLSWKTV-QGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCCSTTT-CSCC-CCEEECCSSC
T ss_pred             ceeCHHHc-ccCC-ceEEEeeCCC
Confidence            88876542 2333 9999998764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.57  E-value=8.6e-07  Score=77.01  Aligned_cols=65  Identities=17%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             CCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecC
Q 045653          131 LPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       131 l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c  196 (272)
                      .++|+.|+|.+|.+.......+...+...++|++|++.++. +.+...   ...+...++|++|++++|
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            45566666666643321111111111234556666666533 333200   122334456666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.35  E-value=4.6e-06  Score=72.40  Aligned_cols=173  Identities=16%  Similarity=0.115  Sum_probs=95.6

Q ss_pred             CCCcceeeecccccccccccc--ccc-ccccCCccEEEEccCccceeecCCCccccce--eccccCeEEecCCCCccccc
Q 045653            9 FPLLESLTLHNLINLERICID--RLK-VDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~--~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~   83 (272)
                      .++|++|+++++. +......  ... ....++|++|++++|. +.....     ..+  .+++|+.|++++| .+.+..
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~-----~~l~~~L~~L~~L~Ls~n-~l~~~~  142 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGL-----RTLLPVFLRARKLGLQLN-SLGPEA  142 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHH-----HHTHHHHHTEEEEECCSS-CCCHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHH-----HHHHHHHHhccHhhcCCC-CCCHHH
Confidence            4689999999865 3322100  001 1123689999999984 332111     111  4678999999987 343321


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCC-cccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCc
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLD-TSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSL  162 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L  162 (272)
                      .......+        ....+.|+ .+++..|.-.. +...+...+...++|+.|+|++|.+.......+...+...++|
T Consensus       143 ~~~L~~~L--------~~~~~~L~-~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          143 CKDLRDLL--------LHDQCQIT-TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             HHHHHHHH--------HSTTCCCC-EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred             HHHHHHHH--------HhcCCccc-eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence            10000000        00123444 66666654211 1112344456788999999999965532111111123456899


Q ss_pred             CEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcc
Q 045653          163 TRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLL  200 (272)
Q Consensus       163 ~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~  200 (272)
                      ++|++++| .+++...   ...+...++|++|+++++. +.
T Consensus       214 ~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~  252 (372)
T 3un9_A          214 QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LS  252 (372)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CC
T ss_pred             CeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CC
Confidence            99999986 4554311   1234456899999999874 54

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.29  E-value=0.00027  Score=54.83  Aligned_cols=12  Identities=17%  Similarity=0.196  Sum_probs=6.5

Q ss_pred             CCCccEEEeccc
Q 045653          131 LPKLEALELHEI  142 (272)
Q Consensus       131 l~~L~~L~L~~~  142 (272)
                      .++|+.|+|.+|
T Consensus        92 n~~L~~L~L~~N  103 (185)
T 1io0_A           92 NNTLKSLNVESN  103 (185)
T ss_dssp             CSSCCEEECCSS
T ss_pred             CCCcCEEECcCC
Confidence            345555555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.74  E-value=0.81  Score=39.26  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=20.2

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeec
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEAT  252 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~  252 (272)
                      .++|+++.+..  .++.+...+. .+|++|+.+++.
T Consensus       342 c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~lp  374 (394)
T 4fs7_A          342 CTSLSNINFPL--SLRKIGANAF-QGCINLKKVELP  374 (394)
T ss_dssp             CTTCCEECCCT--TCCEECTTTB-TTCTTCCEEEEE
T ss_pred             CCCCCEEEECc--cccEehHHHh-hCCCCCCEEEEC
Confidence            36677776643  3566655432 467777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.64  E-value=0.00085  Score=51.98  Aligned_cols=124  Identities=13%  Similarity=0.027  Sum_probs=72.7

Q ss_pred             cccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccc---hHHHhccccCcEEEeecCCCcce
Q 045653          126 NDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFS---ASMIRSVEQLQHLDICLCKGLLG  201 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~  201 (272)
                      ..+...++|++|+|.+| .+.......+...+...++|++|+++++. +.+-..   ...+...++|++|++++|. +..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~  107 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISG  107 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence            34566789999999998 76542111111123457899999999864 544311   1234456889999999873 433


Q ss_pred             eeccCCccccCCccCCCccCeeec--ccccccccccCCC---ccccCCCcCEEeecCCC
Q 045653          202 IISEDTAIQVTPCFVFPRVSTLRL--IDLPKLRFFYPGM---HTSEWPTLQSLEATGCD  255 (272)
Q Consensus       202 ~~~~~~~~~~~~~~~l~~L~~L~l--~~c~~l~~~~~~~---~~~~~~~L~~L~i~~c~  255 (272)
                      .....-.   ..+...++|++|++  .++ .+++-....   .....+.|++|+++++.
T Consensus       108 ~g~~~l~---~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALV---EALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHH---HGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHH---HHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            2100000   11223378999999  444 555432211   11456789999998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.32  E-value=0.015  Score=47.68  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=34.6

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccc--cCcEEEeecCC
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVE--QLQHLDICLCK  197 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~--~L~~L~i~~c~  197 (272)
                      .+|+|+.|+|++|++..+.  .++..+..+++|+.|++.+ +.+..+   ..+..+.  +|++|++.+++
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~-N~i~~~---~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSG-NELKSE---RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTT-SCCCSG---GGGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCC-CccCCc---hhhhhcccCCcceEEccCCc
Confidence            4667777777777555421  1111223567777777766 444444   1223333  77777777754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.26  E-value=0.25  Score=42.50  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+.+|+.+.+... +..+...    .+..+++|+.+.+.  ..++.+ +...+.++.+|+.+.+..  +++.+.  +.
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~----aF~~c~~L~~i~l~--~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~--~~  328 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTG----AFMNCPALQDIEFS--SRITEL-PESVFAGCISLKSIDIPE--GITQIL--DD  328 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTT----TTTTCTTCCEEECC--TTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TT
T ss_pred             eeecccccEEecccc-cceecCc----ccccccccccccCC--Cccccc-CceeecCCCCcCEEEeCC--cccEeh--Hh
Confidence            455566777766544 1122222    35567888888775  355566 556777888888888864  455554  21


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG  253 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~  253 (272)
                      .     .....+|+++.+..  .++.+...++ .+|++|+.+++.+
T Consensus       329 a-----F~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~  366 (394)
T 4gt6_A          329 A-----FAGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSG  366 (394)
T ss_dssp             T-----TTTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESS
T ss_pred             H-----hhCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECC
Confidence            1     22247888888853  4666665442 5888999988765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=94.16  E-value=0.022  Score=46.67  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=55.4

Q ss_pred             CCCCcCEEEEecCcCCccccc-hHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFS-ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP  236 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  236 (272)
                      .+++|++|++++ +++..+.+ +..+..+++|+.|++++. ++..+.   ....   ...+ +|++|.+.+.+--..++.
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~---~l~~---l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER---ELDK---IKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG---GGGG---GTTS-CCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCch---hhhh---cccC-CcceEEccCCcCccccCc
Confidence            578999999998 56666511 135568999999999985 454442   1111   2223 899999998764333331


Q ss_pred             -----CCccccCCCcCEEeec
Q 045653          237 -----GMHTSEWPTLQSLEAT  252 (272)
Q Consensus       237 -----~~~~~~~~~L~~L~i~  252 (272)
                           ......+|+|+.|+-.
T Consensus       239 ~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEESSC
T ss_pred             chhHHHHHHHHCcccCeECCc
Confidence                 1123578999988743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.21  E-value=0.24  Score=42.62  Aligned_cols=99  Identities=14%  Similarity=0.157  Sum_probs=52.6

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAI  209 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~  209 (272)
                      .+.+|+.+.+... ++.|...    .+..+.+|+++.|-+  .++.+ +...+.++.+|+.+.+..  +++.+.  +.  
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~--~v~~I-~~~aF~~c~~L~~i~lp~--~l~~I~--~~--  360 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPY--LVEEI-GKRSFRGCTSLSNINFPL--SLRKIG--AN--  360 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEEC--TT--
T ss_pred             ccccccccccccc-cceechh----hhcCCCCCCEEEeCC--cccEE-hHHhccCCCCCCEEEECc--cccEeh--HH--
Confidence            3445555555432 3332222    355667777777743  35555 445666777777777754  344444  21  


Q ss_pred             ccCCccCCCccCeeecccccccccccCCCccccCCCcCEE
Q 045653          210 QVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSL  249 (272)
Q Consensus       210 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L  249 (272)
                         +....++|+++.+..  .++.+...+  .+|++|+.+
T Consensus       361 ---aF~~C~~L~~i~lp~--~~~~~~~~F--~~c~~L~~I  393 (394)
T 4fs7_A          361 ---AFQGCINLKKVELPK--RLEQYRYDF--EDTTKFKWI  393 (394)
T ss_dssp             ---TBTTCTTCCEEEEEG--GGGGGGGGB--CTTCEEEEE
T ss_pred             ---HhhCCCCCCEEEECC--CCEEhhhee--cCCCCCcEE
Confidence               122347888888753  344443222  566666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.73  E-value=0.99  Score=38.34  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=19.0

Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEee
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDIC  194 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  194 (272)
                      +..+.+|+++.+.+ ..++.+ +...+.++.+|+.+.+.
T Consensus       282 F~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          282 CSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccc-ccccee-hhhhhcCCCCCCEEEcC
Confidence            44556666665543 223333 33445556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.36  E-value=0.87  Score=38.69  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      +..+.+|+.+.+.+  .+..+ +...+.++++|+.+.+.+. .++.+.  +..     ....++|+++.+..  .++.+.
T Consensus       259 F~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~-~i~~I~--~~a-----F~~c~~L~~i~lp~--~l~~I~  325 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNS-AIETLE--PRV-----FMDCVKLSSVTLPT--ALKTIQ  325 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCT-TCCEEC--TTT-----TTTCTTCCEEECCT--TCCEEC
T ss_pred             cceeehhccccccc--cceec-ccccccccccccccccccc-ccceeh--hhh-----hcCCCCCCEEEcCc--cccEEH
Confidence            34556666666643  34444 4445566677777766542 244443  111     22237788887743  466665


Q ss_pred             CCCccccCCCcCEEeec
Q 045653          236 PGMHTSEWPTLQSLEAT  252 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~  252 (272)
                      ..+. .+|++|+.+.+.
T Consensus       326 ~~aF-~~C~~L~~i~ip  341 (379)
T 4h09_A          326 VYAF-KNCKALSTISYP  341 (379)
T ss_dssp             TTTT-TTCTTCCCCCCC
T ss_pred             HHHh-hCCCCCCEEEEC
Confidence            5432 467777777663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=87.56  E-value=2.8  Score=35.77  Aligned_cols=82  Identities=6%  Similarity=0.135  Sum_probs=52.8

Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      |..+.+|+++.+-+  .+..+ +...+.++++|+.+.+..  .+..+.  +..     ....++|+++.+.+  .++.+.
T Consensus       261 F~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~--~~a-----F~~c~~L~~i~lp~--~v~~I~  326 (394)
T 4gt6_A          261 FDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELP--ESV-----FAGCISLKSIDIPE--GITQIL  326 (394)
T ss_dssp             TTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEEC--TTT-----TTTCTTCCEEECCT--TCCEEC
T ss_pred             eeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccC--cee-----ecCCCCcCEEEeCC--cccEeh
Confidence            55667777777753  33344 445566778888887753  455554  222     22248899999864  577776


Q ss_pred             CCCccccCCCcCEEeec
Q 045653          236 PGMHTSEWPTLQSLEAT  252 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~  252 (272)
                      ..++ .+|.+|+.+.+.
T Consensus       327 ~~aF-~~C~~L~~i~ip  342 (394)
T 4gt6_A          327 DDAF-AGCEQLERIAIP  342 (394)
T ss_dssp             TTTT-TTCTTCCEEEEC
T ss_pred             HhHh-hCCCCCCEEEEC
Confidence            6543 588999998874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=81.67  E-value=1.4  Score=31.46  Aligned_cols=34  Identities=12%  Similarity=0.058  Sum_probs=22.5

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEec
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSN  169 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~  169 (272)
                      ++|+.|+|+++++..+..+    .+..+++|+.|++.+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGA   64 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCS
T ss_pred             cCCCEEECCCCcCCccChh----hhhhccccCEEEecC
Confidence            3678888888777664333    344567777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.14
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.13
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.1
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.06
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.95
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.95
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.91
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.3
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.45
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.31

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-15  Score=126.12  Aligned_cols=214  Identities=14%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREV   86 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~   86 (272)
                      ...+|++|++++|.--... . ......+++|++|++.+|. +.....     ..+ .+++|++|++++|+.+++.....
T Consensus        44 ~~~~L~~LdLs~~~i~~~~-l-~~l~~~c~~L~~L~L~~~~-l~~~~~-----~~l~~~~~L~~L~Ls~c~~itd~~l~~  115 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVST-L-HGILSQCSKLQNLSLEGLR-LSDPIV-----NTLAKNSNLVRLNLSGCSGFSEFALQT  115 (284)
T ss_dssp             CCBCCCEEECTTCEECHHH-H-HHHHTTBCCCSEEECTTCB-CCHHHH-----HHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHH-H-HHHHHhCCCcccccccccC-CCcHHH-----HHHhcCCCCcCccccccccccccccch
Confidence            4467899999887422111 1 1224468999999999984 322111     111 57899999999998876521100


Q ss_pred             cccccccccccccccccceeecceeeeccCCCCcccccccc-cCCCCCccEEEeccc--cceEeccCCCCCCCCCCCCcC
Q 045653           87 KRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFND-KVRLPKLEALELHEI--NVEKIWRSQVPAKFPRFQSLT  163 (272)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~--~l~~i~~~~~~~~~~~l~~L~  163 (272)
                      .            ....++|+ .+.+..|...... .+... ....++|+.|++.+|  .+..   ..+......+++|+
T Consensus       116 l------------~~~~~~L~-~L~ls~c~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~i~~---~~l~~l~~~~~~L~  178 (284)
T d2astb2         116 L------------LSSCSRLD-ELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKNLQK---SDLSTLVRRCPNLV  178 (284)
T ss_dssp             H------------HHHCTTCC-EEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGGSCH---HHHHHHHHHCTTCS
T ss_pred             h------------hHHHHhcc-ccccccccccccc-cchhhhcccccccchhhhccccccccc---cccccccccccccc
Confidence            0            01134555 7777777654321 11111 123467888888876  2322   11111123578888


Q ss_pred             EEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccC
Q 045653          164 RLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEW  243 (272)
Q Consensus       164 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  243 (272)
                      +|++.+|..+++. ....+..+++|++|++.+|..+++....       .+..+|+|+.|++.+|  +.+-........+
T Consensus       179 ~L~L~~~~~itd~-~~~~l~~~~~L~~L~L~~C~~i~~~~l~-------~L~~~~~L~~L~l~~~--~~d~~l~~l~~~l  248 (284)
T d2astb2         179 HLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRCYDIIPETLL-------ELGEIPTLKTLQVFGI--VPDGTLQLLKEAL  248 (284)
T ss_dssp             EEECTTCTTCCGG-GGGGGGGCTTCCEEECTTCTTCCGGGGG-------GGGGCTTCCEEECTTS--SCTTCHHHHHHHS
T ss_pred             ccccccccCCCch-hhhhhcccCcCCEEECCCCCCCChHHHH-------HHhcCCCCCEEeeeCC--CCHHHHHHHHHhC
Confidence            8888888887765 3345667888888888888776543211       1223588888888877  2221111122456


Q ss_pred             CCcCEEeecCCCCCccc
Q 045653          244 PTLQSLEATGCDNLKIF  260 (272)
Q Consensus       244 ~~L~~L~i~~c~~l~~l  260 (272)
                      |.|+   + +|.+++.+
T Consensus       249 p~L~---i-~~~~ls~~  261 (284)
T d2astb2         249 PHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             TTSE---E-SCCCSCCT
T ss_pred             cccc---c-cCccCCCC
Confidence            6655   3 46666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-11  Score=100.46  Aligned_cols=112  Identities=17%  Similarity=0.127  Sum_probs=66.0

Q ss_pred             ccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccC
Q 045653          127 DKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISED  206 (272)
Q Consensus       127 ~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~  206 (272)
                      .+..+++|+.|++.++.+..+...    .+..+.++++|.+.++ .+..+ +......+++|+.+++.++ +++.++.. 
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~l~~L~l~~n-~l~~l-~~~~~~~l~~l~~l~l~~N-~l~~~~~~-  166 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAG-  166 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTT-
T ss_pred             ccccccccccccccccccceeecc----cccccccccccccccc-cccee-ccccccccccchhcccccc-cccccCcc-
Confidence            345567777777777654443222    2345677777777663 44454 4445566777777777765 35444311 


Q ss_pred             CccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          207 TAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       207 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                            ....+++|++|++++. +++.++.++  ...++|+.|++.+.|
T Consensus       167 ------~~~~l~~L~~L~Ls~N-~L~~lp~~~--~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         167 ------LLNGLENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ------TTTTCTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred             ------ccccccccceeecccC-CCcccChhH--CCCCCCCEEEecCCC
Confidence                  1223477777777765 577776655  456777777776644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=6.2e-11  Score=98.16  Aligned_cols=72  Identities=22%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             CCCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            4 VPCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         4 ~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      +|...++++++|+|+++ +++++..  .....+++|++|++.++... ........    .+++|+.|+++++ +++.++
T Consensus        25 lP~~l~~~l~~L~Ls~N-~i~~l~~--~~f~~l~~L~~L~l~~n~~~-~i~~~~f~----~l~~L~~L~l~~n-~l~~l~   95 (305)
T d1xkua_          25 VPKDLPPDTALLDLQNN-KITEIKD--GDFKNLKNLHTLILINNKIS-KISPGAFA----PLVKLERLYLSKN-QLKELP   95 (305)
T ss_dssp             CCCSCCTTCCEEECCSS-CCCCBCT--TTTTTCTTCCEEECCSSCCC-CBCTTTTT----TCTTCCEEECCSS-CCSBCC
T ss_pred             cCCCCCCCCCEEECcCC-cCCCcCh--hHhhcccccccccccccccc-ccchhhhh----CCCccCEecccCC-ccCcCc
Confidence            45555688999999985 5666621  23456899999999998644 33333222    5889999999886 455555


Q ss_pred             c
Q 045653           84 R   84 (272)
Q Consensus        84 ~   84 (272)
                      .
T Consensus        96 ~   96 (305)
T d1xkua_          96 E   96 (305)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.3e-11  Score=97.23  Aligned_cols=111  Identities=17%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.+++.+++++.+.+.    .+..+++|++|++.++ .+..+ +...+.++++|+.+++.++ ++..+.. ..
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N-~l~~l-~~~~f~~l~~L~~l~l~~N-~l~~i~~-~~  196 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGN-RISSV-PERAFRGLHSLDRLLLHQN-RVAHVHP-HA  196 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECT-TT
T ss_pred             cchhcccchhhhccccccccChh----HhccccchhhcccccC-ccccc-chhhhccccccchhhhhhc-cccccCh-hH
Confidence            34566777777777766654332    3445677777777764 45555 4456667777777777765 3444432 11


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGC  254 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c  254 (272)
                            +..+++|++|+++++ .+..++... ...+++|++|++++.
T Consensus       197 ------f~~l~~L~~L~l~~N-~i~~~~~~~-~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         197 ------FRDLGRLMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDN  235 (284)
T ss_dssp             ------TTTCTTCCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSS
T ss_pred             ------hhhhhhccccccccc-ccccccccc-cccccccCEEEecCC
Confidence                  233477888888775 455554322 146777888887763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.1e-13  Score=111.59  Aligned_cols=166  Identities=16%  Similarity=0.143  Sum_probs=110.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|.+.+|. +.+..  ......+++|++|++++|.+++.........   .+++|++|++++|..+++-.....
T Consensus        69 ~c~~L~~L~L~~~~-l~~~~--~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~---~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          69 QCSKLQNLSLEGLR-LSDPI--VNTLAKNSNLVRLNLSGCSGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             TBCCCSEEECTTCB-CCHHH--HHHHTTCTTCSEEECTTCBSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             hCCCcccccccccC-CCcHH--HHHHhcCCCCcCccccccccccccccchhhH---HHHhccccccccccccccccchhh
Confidence            56899999999984 43321  2334468999999999998876432111000   579999999999988764211000


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLV  166 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~  166 (272)
                      .           ....+.++ .+.+..|....+...+......+|+|++|++++| .+......    .+..+++|++|+
T Consensus       143 ~-----------~~~~~~L~-~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~----~l~~~~~L~~L~  206 (284)
T d2astb2         143 V-----------AHVSETIT-QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLS  206 (284)
T ss_dssp             H-----------HHSCTTCC-EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEE
T ss_pred             h-----------cccccccc-hhhhcccccccccccccccccccccccccccccccCCCchhhh----hhcccCcCCEEE
Confidence            0           00123444 6667665432222233333456899999999998 56542222    344689999999


Q ss_pred             EecCcCCccccchHHHhccccCcEEEeecC
Q 045653          167 VSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       167 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +.+|+.+++. ....++++++|+.|++.+|
T Consensus       207 L~~C~~i~~~-~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPE-TLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGG-GGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCChH-HHHHHhcCCCCCEEeeeCC
Confidence            9999999876 3345778999999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.9e-10  Score=91.19  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             CCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPG  237 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  237 (272)
                      .+++|++|.+.++. +.+.   ..+.++++|+.|+++++ +++.+..         +..+++|+.|+++++ ++++++. 
T Consensus       149 ~~~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~Ls~n-~l~~l~~---------l~~l~~L~~L~Ls~N-~lt~i~~-  212 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQ-VSDL---TPLANLSKLTTLKADDN-KISDISP---------LASLPNLIEVHLKNN-QISDVSP-  212 (227)
T ss_dssp             GCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCCGG---------GGGCTTCCEEECTTS-CCCBCGG-
T ss_pred             cccccccccccccc-cccc---hhhcccccceecccCCC-ccCCChh---------hcCCCCCCEEECcCC-cCCCCcc-
Confidence            34455555554432 2222   12344555555555554 3333221         122355555555554 4544432 


Q ss_pred             CccccCCCcCEEeec
Q 045653          238 MHTSEWPTLQSLEAT  252 (272)
Q Consensus       238 ~~~~~~~~L~~L~i~  252 (272)
                      .  .++++|+.|+++
T Consensus       213 l--~~l~~L~~L~ls  225 (227)
T d1h6ua2         213 L--ANTSNLFIVTLT  225 (227)
T ss_dssp             G--TTCTTCCEEEEE
T ss_pred             c--ccCCCCCEEEee
Confidence            1  345555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=2.3e-10  Score=89.74  Aligned_cols=102  Identities=18%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|+.|++.++.+..+.      .+..+++++.+.+.++ .+.+.   .....+++|+.+++.++ ++..+..   
T Consensus       108 l~~l~~L~~L~l~~~~~~~~~------~l~~l~~l~~l~~~~n-~l~~~---~~~~~l~~L~~l~l~~n-~l~~i~~---  173 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDIN------GLVHLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---  173 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG------GGGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCCCGG---
T ss_pred             ccccccccccccccccccccc------cccccccccccccccc-ccccc---ccccccccccccccccc-ccccccc---
Confidence            456788888888888544321      2346788888888764 44554   34567888888888876 3544331   


Q ss_pred             ccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecC
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATG  253 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~  253 (272)
                            ...+++|++|+++++ ++++++. .  ..+++|++|++++
T Consensus       174 ------l~~l~~L~~L~Ls~N-~i~~l~~-l--~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 ------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFS  209 (210)
T ss_dssp             ------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEE
T ss_pred             ------ccCCCCCCEEECCCC-CCCCChh-h--cCCCCCCEEEccC
Confidence                  233588999998886 6777652 3  5788888888763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.14  E-value=1.1e-10  Score=97.07  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=40.1

Q ss_pred             CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCC
Q 045653           11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNL   76 (272)
Q Consensus        11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c   76 (272)
                      .+++|+|.++ ++......+...+.+++|++|++++|.++....+...+    .+++|++|+++++
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~----~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHT  111 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEE
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccc----cccccchhhhccc
Confidence            5788888875 33332222456777899999999888777632221122    5788888888875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.5e-10  Score=89.84  Aligned_cols=182  Identities=16%  Similarity=0.139  Sum_probs=123.6

Q ss_pred             CcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccc
Q 045653           11 LLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHS   90 (272)
Q Consensus        11 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~   90 (272)
                      .+.+++.++ .+|+.+   |..  -.++|++|++++. ++...+.....    .+++|++|+++++ +++.++.      
T Consensus        11 ~~~~v~C~~-~~L~~i---P~~--lp~~l~~L~Ls~N-~i~~l~~~~f~----~l~~L~~L~L~~N-~l~~l~~------   72 (266)
T d1p9ag_          11 SHLEVNCDK-RNLTAL---PPD--LPKDTTILHLSEN-LLYTFSLATLM----PYTRLTQLNLDRA-ELTKLQV------   72 (266)
T ss_dssp             TCCEEECTT-SCCSSC---CSC--CCTTCCEEECTTS-CCSEEEGGGGT----TCTTCCEEECTTS-CCCEEEC------
T ss_pred             CCeEEEccC-CCCCee---CcC--cCcCCCEEECcCC-cCCCcCHHHhh----ccccccccccccc-ccccccc------
Confidence            344444444 345555   221  1267999999987 45544432222    5788999999875 4443221      


Q ss_pred             cccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653           91 ISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC  170 (272)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c  170 (272)
                                                           +..+++|+.|++++|++..+.     ..+..+++|+.|++.++
T Consensus        73 -------------------------------------~~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          73 -------------------------------------DGTLPVLGTLDLSHNQLQSLP-----LLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             -------------------------------------CSCCTTCCEEECCSSCCSSCC-----CCTTTCTTCCEEECCSS
T ss_pred             -------------------------------------ccccccccccccccccccccc-----ccccccccccccccccc
Confidence                                                 245789999999999776532     24567899999999986


Q ss_pred             cCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEe
Q 045653          171 HKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLE  250 (272)
Q Consensus       171 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~  250 (272)
                      .. ..+ +......+.+++.|++.++ .+..++.  ..     ...+++++.++++++ +++.++...+ ..+++|++|+
T Consensus       111 ~~-~~~-~~~~~~~l~~l~~L~l~~n-~l~~l~~--~~-----~~~l~~l~~l~l~~N-~l~~~~~~~~-~~l~~L~~L~  178 (266)
T d1p9ag_         111 RL-TSL-PLGALRGLGELQELYLKGN-ELKTLPP--GL-----LTPTPKLEKLSLANN-NLTELPAGLL-NGLENLDTLL  178 (266)
T ss_dssp             CC-CCC-CSSTTTTCTTCCEEECTTS-CCCCCCT--TT-----TTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTCCEEE
T ss_pred             cc-cee-ecccccccccccccccccc-ccceecc--cc-----ccccccchhcccccc-cccccCcccc-ccccccceee
Confidence            54 444 4455678899999999986 4555542  11     223589999999886 7887776532 5789999999


Q ss_pred             ecCCCCCcccccccc
Q 045653          251 ATGCDNLKIFGSELS  265 (272)
Q Consensus       251 i~~c~~l~~l~~~~~  265 (272)
                      ++++ +++++|.+..
T Consensus       179 Ls~N-~L~~lp~~~~  192 (266)
T d1p9ag_         179 LQEN-SLYTIPKGFF  192 (266)
T ss_dssp             CCSS-CCCCCCTTTT
T ss_pred             cccC-CCcccChhHC
Confidence            9998 4888887654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.11  E-value=3.4e-09  Score=87.37  Aligned_cols=213  Identities=11%  Similarity=0.095  Sum_probs=124.7

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++|++|++.++... .+ . +.....+++|+.|++.++ ++...+..       .++.++.|.+.+. .+..++....
T Consensus        53 ~l~~L~~L~l~~n~~~-~i-~-~~~f~~l~~L~~L~l~~n-~l~~l~~~-------~~~~l~~L~~~~n-~l~~l~~~~~  120 (305)
T d1xkua_          53 NLKNLHTLILINNKIS-KI-S-PGAFAPLVKLERLYLSKN-QLKELPEK-------MPKTLQELRVHEN-EITKVRKSVF  120 (305)
T ss_dssp             TCTTCCEEECCSSCCC-CB-C-TTTTTTCTTCCEEECCSS-CCSBCCSS-------CCTTCCEEECCSS-CCCBBCHHHH
T ss_pred             cccccccccccccccc-cc-c-hhhhhCCCccCEecccCC-ccCcCccc-------hhhhhhhhhcccc-chhhhhhhhh
Confidence            4578999999987543 33 1 234567899999999998 45544332       2567777777653 3333322111


Q ss_pred             ccc-----cc--c---cccccc---ccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCC
Q 045653           88 RHS-----IS--S---NTKDSQ---DQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPA  154 (272)
Q Consensus        88 ~~~-----~~--~---~~~~~~---~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~  154 (272)
                      ...     +.  .   ......   ....+.++ .+.+..+.-.    .++.  ..+++|+.|++.++......+.    
T Consensus       121 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~-~l~l~~n~l~----~l~~--~~~~~L~~L~l~~n~~~~~~~~----  189 (305)
T d1xkua_         121 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT----TIPQ--GLPPSLTELHLDGNKITKVDAA----  189 (305)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC----SCCS--SCCTTCSEEECTTSCCCEECTG----
T ss_pred             hccccccccccccccccccCCCccccccccccC-ccccccCCcc----ccCc--ccCCccCEEECCCCcCCCCChh----
Confidence            100     00  0   000000   11112222 3333332211    2222  2467888888888855443332    


Q ss_pred             CCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc
Q 045653          155 KFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF  234 (272)
Q Consensus       155 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  234 (272)
                      .+..++++++|.+.++ .+..+ +...+.++++|++|+++++ +++.++  ++.      ..+++|+.|+++++ +++.+
T Consensus       190 ~~~~~~~l~~L~~s~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~L~~lp--~~l------~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLNNN-KLVKVP--GGL------ADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             GGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECCSS-CCSSCC--TTT------TTCSSCCEEECCSS-CCCCC
T ss_pred             Hhhccccccccccccc-ccccc-ccccccccccceeeecccc-cccccc--ccc------ccccCCCEEECCCC-ccCcc
Confidence            3557788888888875 55666 4566778889999999887 566654  222      33588999999885 68877


Q ss_pred             cCCCc-----cccCCCcCEEeecCCC
Q 045653          235 YPGMH-----TSEWPTLQSLEATGCD  255 (272)
Q Consensus       235 ~~~~~-----~~~~~~L~~L~i~~c~  255 (272)
                      +...+     ....++|+.|++.+.+
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ChhhccCcchhcccCCCCEEECCCCc
Confidence            65321     1345678889998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=6.4e-10  Score=86.31  Aligned_cols=39  Identities=21%  Similarity=0.379  Sum_probs=23.5

Q ss_pred             ccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccc
Q 045653           35 SFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTS   81 (272)
Q Consensus        35 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~   81 (272)
                      .++++++|++.++. +.....  .+    .+++|+.|+++++ ++++
T Consensus        38 ~l~~l~~L~l~~~~-i~~l~~--l~----~l~nL~~L~Ls~N-~l~~   76 (199)
T d2omxa2          38 DLDQVTTLQADRLG-IKSIDG--VE----YLNNLTQINFSNN-QLTD   76 (199)
T ss_dssp             HHTTCCEEECTTSC-CCCCTT--GG----GCTTCCEEECCSS-CCCC
T ss_pred             HhcCCCEEECCCCC-CCCccc--cc----cCCCcCcCccccc-cccC
Confidence            46778888888773 332211  11    4778888888775 4444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.6e-09  Score=87.29  Aligned_cols=186  Identities=13%  Similarity=0.117  Sum_probs=122.6

Q ss_pred             cCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccccccccccccccccccceeecceeeecc
Q 045653           36 FNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKRHSISSNTKDSQDQSMTAITCSYEVNLE  115 (272)
Q Consensus        36 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~  115 (272)
                      .+++++|+++++ ++..++.....    .++.|+.|++++. ++..++......             .+.+. .+.+...
T Consensus        31 p~~~~~L~Ls~N-~i~~i~~~~f~----~l~~L~~L~ls~n-~l~~i~~~~~~~-------------~~~~~-~l~~~~~   90 (284)
T d1ozna_          31 PAASQRIFLHGN-RISHVPAASFR----ACRNLTILWLHSN-VLARIDAAAFTG-------------LALLE-QLDLSDN   90 (284)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTTT----TCTTCCEEECCSS-CCCEECTTTTTT-------------CTTCC-EEECCSC
T ss_pred             CCCCCEEECcCC-cCCCCCHHHhh----ccccccccccccc-cccccccccccc-------------ccccc-ccccccc
Confidence            357889999887 56666544333    4788999998864 455544432221             01111 2222222


Q ss_pred             CCCCccccc-ccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEee
Q 045653          116 DKLDTSTTL-FNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDIC  194 (272)
Q Consensus       116 ~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  194 (272)
                      ....   .+ +..+..+++|+.|++.++.+..+...    .+...++|+.+++.+ +.++.+ +...+..+++|++|++.
T Consensus        91 ~~~~---~l~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~l~l~~-N~l~~i-~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_          91 AQLR---SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQD-NALQAL-PDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             TTCC---CCCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             cccc---cccchhhcccccCCEEecCCccccccccc----ccchhcccchhhhcc-cccccc-ChhHhccccchhhcccc
Confidence            2222   12 33467889999999999976654433    355789999999997 567776 65677889999999999


Q ss_pred             cCCCcceeeccCCccccCCccCCCccCeeeccccccccccc-CCCccccCCCcCEEeecCCCCCccccc
Q 045653          195 LCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY-PGMHTSEWPTLQSLEATGCDNLKIFGS  262 (272)
Q Consensus       195 ~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~i~~c~~l~~l~~  262 (272)
                      ++ ++..+....       ...+++|+.+.+.++ +++.+. ..+  ..+++|++|+++++. +..+++
T Consensus       162 ~N-~l~~l~~~~-------f~~l~~L~~l~l~~N-~l~~i~~~~f--~~l~~L~~L~l~~N~-i~~~~~  218 (284)
T d1ozna_         162 GN-RISSVPERA-------FRGLHSLDRLLLHQN-RVAHVHPHAF--RDLGRLMTLYLFANN-LSALPT  218 (284)
T ss_dssp             SS-CCCEECTTT-------TTTCTTCCEEECCSS-CCCEECTTTT--TTCTTCCEEECCSSC-CSCCCH
T ss_pred             cC-cccccchhh-------hccccccchhhhhhc-cccccChhHh--hhhhhcccccccccc-cccccc
Confidence            97 577665321       223589999999986 555554 444  688999999998864 555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.4e-09  Score=82.33  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=33.6

Q ss_pred             CCCCCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccc
Q 045653            5 PCDAFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         5 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~   83 (272)
                      |...+.++++|++.+. .++.+..  .....+++|++|++.++......+.....    .++.++++.+..+..+..++
T Consensus        24 P~~l~~~l~~L~Ls~n-~i~~l~~--~~f~~l~~L~~L~ls~n~~~~~i~~~~f~----~l~~l~~l~~~~~n~l~~~~   95 (242)
T d1xwdc1          24 PSDLPRNAIELRFVLT-KLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLHEIRIEKANNLLYIN   95 (242)
T ss_dssp             CSCSCSCCSEEEEESC-CCCEECT--TTTTTCTTCCEEEEESCTTCCEECSSSEE----SCTTCCEEEEECCTTCCEEC
T ss_pred             CCCCCCCCCEEECcCC-cCCccCh--hHhhccchhhhhhhccccccceeeccccc----cccccccccccccccccccc
Confidence            3333446666666653 3444311  12234566666666665443333221111    24555666555555554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=5.5e-09  Score=88.44  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             HhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCcccc
Q 045653          182 IRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFG  261 (272)
Q Consensus       182 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~  261 (272)
                      ...+++++.|+++++ +++++.         +...+|+|++|+++++ ++++++. .  ..+++|++|+++++ +++.++
T Consensus       303 ~~~~~~l~~L~ls~n-~l~~l~---------~l~~l~~L~~L~L~~n-~l~~l~~-l--~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NISDIS---------PVSSLTKLQRLFFANN-KVSDVSS-L--ANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCG---------GGGGCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECCSS-CCCBCG
T ss_pred             cchhcccCeEECCCC-CCCCCc---------ccccCCCCCEEECCCC-CCCCChh-H--cCCCCCCEEECCCC-cCCCCh
Confidence            344555555555554 333322         1334588888888887 6766652 3  56888888888766 566655


Q ss_pred             c
Q 045653          262 S  262 (272)
Q Consensus       262 ~  262 (272)
                      +
T Consensus       368 ~  368 (384)
T d2omza2         368 P  368 (384)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=2.7e-09  Score=84.28  Aligned_cols=180  Identities=14%  Similarity=0.174  Sum_probs=104.5

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      +.+|++|.+.++ +++++    .....+++|++|+++++. +.....  ..    .+++|+.+.++++. ++.++.-...
T Consensus        40 l~~L~~L~l~~~-~i~~l----~~l~~l~~L~~L~ls~n~-i~~~~~--l~----~l~~l~~l~~~~n~-~~~i~~l~~l  106 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTTI----EGVQYLNNLIGLELKDNQ-ITDLAP--LK----NLTKITELELSGNP-LKNVSAIAGL  106 (227)
T ss_dssp             HHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSSC-CCCCGG--GT----TCCSCCEEECCSCC-CSCCGGGTTC
T ss_pred             cCCcCEEECCCC-CCCcc----hhHhcCCCCcEeecCCce-eecccc--cc----cccccccccccccc-cccccccccc
Confidence            467888888886 35555    234568889999988873 332211  11    46777777776652 2232211111


Q ss_pred             cccc-cccccc------cccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCC
Q 045653           89 HSIS-SNTKDS------QDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQS  161 (272)
Q Consensus        89 ~~~~-~~~~~~------~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~  161 (272)
                      ..+. ..+...      .....+.+. .+.+..+.-.     ....+...++|+.|.+.++.+... .     .+..+++
T Consensus       107 ~~L~~l~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~-~-----~l~~l~~  174 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVTPLAGLSNLQ-VLYLDLNQIT-----NISPLAGLTNLQYLSIGNAQVSDL-T-----PLANLSK  174 (227)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTCTTCC-EEECCSSCCC-----CCGGGGGCTTCCEEECCSSCCCCC-G-----GGTTCTT
T ss_pred             ccccccccccccccccchhccccchh-hhhchhhhhc-----hhhhhccccccccccccccccccc-h-----hhccccc
Confidence            1111 000000      000111111 2222222111     112245678999999999866542 1     2457899


Q ss_pred             cCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccc
Q 045653          162 LTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLID  227 (272)
Q Consensus       162 L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~  227 (272)
                      |++|++.++ +++++ +  .++++++|++|++++| +++.+.+         +..+++|+.|++++
T Consensus       175 L~~L~Ls~n-~l~~l-~--~l~~l~~L~~L~Ls~N-~lt~i~~---------l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         175 LTTLKADDN-KISDI-S--PLASLPNLIEVHLKNN-QISDVSP---------LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECCSS-CCCCC-G--GGGGCTTCCEEECTTS-CCCBCGG---------GTTCTTCCEEEEEE
T ss_pred             ceecccCCC-ccCCC-h--hhcCCCCCCEEECcCC-cCCCCcc---------cccCCCCCEEEeeC
Confidence            999999986 67877 3  4789999999999998 5877652         23358999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=8e-09  Score=87.38  Aligned_cols=188  Identities=18%  Similarity=0.225  Sum_probs=116.2

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCcc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVK   87 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~   87 (272)
                      .+++++.+.++++ .++.+    .+....++|++|++.++. +...+.  ..    .+++|+.|+++++ .++.++....
T Consensus       195 ~l~~~~~l~l~~n-~i~~~----~~~~~~~~L~~L~l~~n~-l~~~~~--l~----~l~~L~~L~l~~n-~l~~~~~~~~  261 (384)
T d2omza2         195 KLTNLESLIATNN-QISDI----TPLGILTNLDELSLNGNQ-LKDIGT--LA----SLTNLTDLDLANN-QISNLAPLSG  261 (384)
T ss_dssp             GCTTCSEEECCSS-CCCCC----GGGGGCTTCCEEECCSSC-CCCCGG--GG----GCTTCSEEECCSS-CCCCCGGGTT
T ss_pred             cccccceeeccCC-ccCCC----CcccccCCCCEEECCCCC-CCCcch--hh----cccccchhccccC-ccCCCCcccc
Confidence            4567777777664 23333    223456778888887773 332221  01    4678888888775 3444332111


Q ss_pred             ccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           88 RHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                                     .+.++ .+++..+.-.    .+ ..+..++.++.+.+.++.+..+.      .+..+++++.|++
T Consensus       262 ---------------~~~L~-~L~l~~~~l~----~~-~~~~~~~~l~~l~~~~n~l~~~~------~~~~~~~l~~L~l  314 (384)
T d2omza2         262 ---------------LTKLT-ELKLGANQIS----NI-SPLAGLTALTNLELNENQLEDIS------PISNLKNLTYLTL  314 (384)
T ss_dssp             ---------------CTTCS-EEECCSSCCC----CC-GGGTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEEC
T ss_pred             ---------------cccCC-EeeccCcccC----CC-Ccccccccccccccccccccccc------ccchhcccCeEEC
Confidence                           22333 4444433221    11 12355677788888777555421      2346889999999


Q ss_pred             ecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcC
Q 045653          168 SNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQ  247 (272)
Q Consensus       168 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~  247 (272)
                      +++ +++++ +  .+..+++|++|++++| .++.+.   .      +..+++|+.|+++++ ++++++. .  ..+++|+
T Consensus       315 s~n-~l~~l-~--~l~~l~~L~~L~L~~n-~l~~l~---~------l~~l~~L~~L~l~~N-~l~~l~~-l--~~l~~L~  376 (384)
T d2omza2         315 YFN-NISDI-S--PVSSLTKLQRLFFANN-KVSDVS---S------LANLTNINWLSAGHN-QISDLTP-L--ANLTRIT  376 (384)
T ss_dssp             CSS-CCSCC-G--GGGGCTTCCEEECCSS-CCCCCG---G------GGGCTTCCEEECCSS-CCCBCGG-G--TTCTTCS
T ss_pred             CCC-CCCCC-c--ccccCCCCCEEECCCC-CCCCCh---h------HcCCCCCCEEECCCC-cCCCChh-h--ccCCCCC
Confidence            885 66776 3  3678999999999998 566553   1      233599999999886 6777754 3  5789999


Q ss_pred             EEeecC
Q 045653          248 SLEATG  253 (272)
Q Consensus       248 ~L~i~~  253 (272)
                      .|++++
T Consensus       377 ~L~L~~  382 (384)
T d2omza2         377 QLGLND  382 (384)
T ss_dssp             EEECCC
T ss_pred             EeeCCC
Confidence            999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=3.7e-09  Score=81.89  Aligned_cols=161  Identities=17%  Similarity=0.242  Sum_probs=102.8

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      ++++++|.+.++ +++++    .....+++|++|+++++ ++.....  .+    .+++|+.|+++++. +..++     
T Consensus        39 l~~l~~L~l~~~-~i~~l----~~l~~l~nL~~L~Ls~N-~l~~~~~--l~----~l~~L~~L~l~~n~-~~~~~-----  100 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSI----DGVEYLNNLTQINFSNN-QLTDITP--LK----NLTKLVDILMNNNQ-IADIT-----  100 (199)
T ss_dssp             HTTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGG--GT----TCTTCCEEECCSSC-CCCCG-----
T ss_pred             hcCCCEEECCCC-CCCCc----cccccCCCcCcCccccc-cccCccc--cc----CCcccccccccccc-ccccc-----
Confidence            578999999985 45555    33457999999999998 5554332  11    58999999998753 22211     


Q ss_pred             cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS  168 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~  168 (272)
                                                            .+..+++|+.|++.++....+.      .+..+++|+.|++.
T Consensus       101 --------------------------------------~l~~l~~L~~L~l~~~~~~~~~------~~~~l~~L~~L~l~  136 (199)
T d2omxa2         101 --------------------------------------PLANLTNLTGLTLFNNQITDID------PLKNLTNLNRLELS  136 (199)
T ss_dssp             --------------------------------------GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECC
T ss_pred             --------------------------------------cccccccccccccccccccccc------ccchhhhhHHhhhh
Confidence                                                  1245677788888777443311      13357778888887


Q ss_pred             cCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCE
Q 045653          169 NCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQS  248 (272)
Q Consensus       169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~  248 (272)
                      ++. +..+   +.+..+++|+.|++.++ +++.+.         ++..+++|+.|+++++ ++++++. .  ..+++|++
T Consensus       137 ~n~-l~~~---~~l~~~~~L~~L~l~~n-~l~~l~---------~l~~l~~L~~L~ls~N-~i~~i~~-l--~~L~~L~~  198 (199)
T d2omxa2         137 SNT-ISDI---SALSGLTSLQQLNFSSN-QVTDLK---------PLANLTTLERLDISSN-KVSDISV-L--AKLTNLES  198 (199)
T ss_dssp             SSC-CCCC---GGGTTCTTCSEEECCSS-CCCCCG---------GGTTCTTCCEEECCSS-CCCCCGG-G--GGCTTCSE
T ss_pred             hhh-hccc---ccccccccccccccccc-cccCCc---------cccCCCCCCEEECCCC-CCCCCcc-c--cCCCCCCc
Confidence            643 4444   24567778888888775 344432         1233578888888776 5766542 2  46677776


Q ss_pred             E
Q 045653          249 L  249 (272)
Q Consensus       249 L  249 (272)
                      |
T Consensus       199 L  199 (199)
T d2omxa2         199 L  199 (199)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.95  E-value=2.8e-09  Score=88.32  Aligned_cols=69  Identities=16%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             HHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccc-cccCCCccccCCCcCEEeecCCCCCc-
Q 045653          181 MIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLR-FFYPGMHTSEWPTLQSLEATGCDNLK-  258 (272)
Q Consensus       181 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~i~~c~~l~-  258 (272)
                      ....+++|+.+++.++. +...+        ..+..+++|+.|+++++ +++ .+|..+  ..+++|++|+++++ +++ 
T Consensus       216 ~~~~~~~l~~l~~~~~~-l~~~~--------~~~~~~~~L~~L~Ls~N-~l~g~iP~~l--~~L~~L~~L~Ls~N-~l~g  282 (313)
T d1ogqa_         216 LFGSDKNTQKIHLAKNS-LAFDL--------GKVGLSKNLNGLDLRNN-RIYGTLPQGL--TQLKFLHSLNVSFN-NLCG  282 (313)
T ss_dssp             GCCTTSCCSEEECCSSE-ECCBG--------GGCCCCTTCCEEECCSS-CCEECCCGGG--GGCTTCCEEECCSS-EEEE
T ss_pred             ccccccccccccccccc-ccccc--------cccccccccccccCccC-eecccCChHH--hCCCCCCEEECcCC-cccc
Confidence            34456666777666653 22221        11233589999999987 455 677766  78999999999987 454 


Q ss_pred             cccc
Q 045653          259 IFGS  262 (272)
Q Consensus       259 ~l~~  262 (272)
                      .+|.
T Consensus       283 ~iP~  286 (313)
T d1ogqa_         283 EIPQ  286 (313)
T ss_dssp             ECCC
T ss_pred             cCCC
Confidence            4554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=6.9e-09  Score=81.03  Aligned_cols=165  Identities=14%  Similarity=0.230  Sum_probs=110.8

Q ss_pred             CCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCccccccCccc
Q 045653            9 FPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus         9 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      +.+|++|.++++ .++.+    .....+++|++|+++++ ++......  +    .+++|+.|+++++ +++.++.... 
T Consensus        45 L~~L~~L~l~~~-~i~~l----~~l~~l~~L~~L~L~~n-~i~~l~~~--~----~l~~L~~L~l~~n-~i~~l~~l~~-  110 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSV----QGIQYLPNVTKLFLNGN-KLTDIKPL--A----NLKNLGWLFLDEN-KVKDLSSLKD-  110 (210)
T ss_dssp             HHTCCEEECTTS-CCCCC----TTGGGCTTCCEEECCSS-CCCCCGGG--T----TCTTCCEEECCSS-CCCCGGGGTT-
T ss_pred             hcCccEEECcCC-CCCCc----hhHhhCCCCCEEeCCCc-cccCcccc--c----cCccccccccccc-cccccccccc-
Confidence            457889999885 44444    23456899999999998 44443321  1    5899999999986 5666542111 


Q ss_pred             cccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEe
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVS  168 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~  168 (272)
                                    ++.|+ .+.+..+....     ...+..+++|+.+++.++.+....      .+..+++|+++++.
T Consensus       111 --------------l~~L~-~L~l~~~~~~~-----~~~l~~l~~l~~l~~~~n~l~~~~------~~~~l~~L~~l~l~  164 (210)
T d1h6ta2         111 --------------LKKLK-SLSLEHNGISD-----INGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLE  164 (210)
T ss_dssp             --------------CTTCC-EEECTTSCCCC-----CGGGGGCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECC
T ss_pred             --------------ccccc-ccccccccccc-----cccccccccccccccccccccccc------cccccccccccccc
Confidence                          33444 55555544321     223567889999999988665421      23368999999999


Q ss_pred             cCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccc
Q 045653          169 NCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLID  227 (272)
Q Consensus       169 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~  227 (272)
                      ++ .+.++ +  .+.++++|++|+++++ .++.+.   .      +..+++|+.|++++
T Consensus       165 ~n-~l~~i-~--~l~~l~~L~~L~Ls~N-~i~~l~---~------l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         165 DN-QISDI-V--PLAGLTKLQNLYLSKN-HISDLR---A------LAGLKNLDVLELFS  209 (210)
T ss_dssp             SS-CCCCC-G--GGTTCTTCCEEECCSS-CCCBCG---G------GTTCTTCSEEEEEE
T ss_pred             cc-ccccc-c--cccCCCCCCEEECCCC-CCCCCh---h------hcCCCCCCEEEccC
Confidence            85 56666 3  3788999999999987 576553   1      23358999999864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.2e-08  Score=78.51  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             CCCCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccceeccccCeEEecCCCCcccc
Q 045653            8 AFPLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEGIFAQISCLSLGNLPQLTSF   82 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~   82 (272)
                      .+++|++|+++++.....+ . ......+++++++.+..+.++.........    .+++|+.|+++++ .+...
T Consensus        51 ~l~~L~~L~ls~n~~~~~i-~-~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~----~l~~L~~l~l~~~-~l~~~  118 (242)
T d1xwdc1          51 GFGDLEKIEISQNDVLEVI-E-ADVFSNLPKLHEIRIEKANNLLYINPEAFQ----NLPNLQYLLISNT-GIKHL  118 (242)
T ss_dssp             TCTTCCEEEEESCTTCCEE-C-SSSEESCTTCCEEEEECCTTCCEECTTSEE----CCTTCCEEEEESC-CCCSC
T ss_pred             ccchhhhhhhcccccccee-e-cccccccccccccccccccccccccccccc----ccccccccccchh-hhccc
Confidence            4689999999987655444 2 223345789999999999888776654433    5899999999875 44443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.8e-08  Score=73.53  Aligned_cols=108  Identities=16%  Similarity=0.246  Sum_probs=76.2

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ..+++|+.|++++|++..+ +     .+..+++|++|++.++. ++.+ +......+++|++|++.++ .+..+....  
T Consensus        38 ~~l~~L~~L~Ls~N~i~~l-~-----~~~~l~~L~~L~ls~N~-i~~l-~~~~~~~l~~L~~L~L~~N-~i~~~~~l~--  106 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNR-ICRI-GEGLDQALPDLTELILTNN-SLVELGDLD--  106 (162)
T ss_dssp             GGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSC-CCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGG--
T ss_pred             cccccCCEEECCCCCCCcc-C-----CcccCcchhhhhccccc-ccCC-Cccccccccccccceeccc-ccccccccc--
Confidence            4578999999999988875 2     24578999999999854 6676 5556678999999999987 354443111  


Q ss_pred             cccCCccCCCccCeeecccccccccccCC--CccccCCCcCEEeec
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSLEAT  252 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L~i~  252 (272)
                          ....+|+|+.|.+.++ .++..+..  .....+|+|+.|+..
T Consensus       107 ----~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         107 ----PLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ----GGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ----ccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence                2334699999999987 45555431  112568888888743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.4e-08  Score=74.63  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ....+|++|+++++++..+. .    .+..+++|+.|+++++ .+..+   +.+..+++|+.|++++| .++.++  .+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~-~----~~~~l~~L~~L~Ls~N-~i~~l---~~~~~l~~L~~L~ls~N-~i~~l~--~~~   82 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIE-N----LGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG--EGL   82 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-C----GGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC--SCH
T ss_pred             cCcCcCcEEECCCCCCCccC-c----cccccccCCEEECCCC-CCCcc---CCcccCcchhhhhcccc-cccCCC--ccc
Confidence            45678999999999887752 2    2346899999999994 67777   34678999999999998 477765  222


Q ss_pred             cccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      .     ..+++|++|+++++ .+++++.-.....+++|++|++.+|+
T Consensus        83 ~-----~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          83 D-----QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             H-----HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             c-----ccccccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            1     22599999999986 66666542222688999999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.51  E-value=3.7e-06  Score=69.39  Aligned_cols=63  Identities=19%  Similarity=0.090  Sum_probs=46.6

Q ss_pred             cccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          185 VEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       185 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                      +++|++|++++| ++..++  +         .+++|+.|+++++ ++++++.     ..++|++|++++|+ ++.+|...
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp--~---------~~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~~~  343 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELP--A---------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIP  343 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCC--C---------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             CCCCCEEECCCC-ccCccc--c---------ccCCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCccc
Confidence            578999999887 465554  1         1488999999876 6777764     24689999999986 88887654


Q ss_pred             cc
Q 045653          265 SS  266 (272)
Q Consensus       265 ~~  266 (272)
                      .+
T Consensus       344 ~~  345 (353)
T d1jl5a_         344 ES  345 (353)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.49  E-value=4.6e-07  Score=69.26  Aligned_cols=63  Identities=14%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      +..+++|+.|+++++++..+.++    .|..+++|++|++.+ +.++.+ ++..+..+++|++|++.+.
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~l~~~----~F~~l~~L~~L~L~~-N~l~~i-~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYD-NQISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCS-SCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             cccccccceeeeccccccccCHH----HHhCCCcccccccCC-cccccc-CHHHhcCCccccccccccc
Confidence            35567788888888877775444    456778888888877 456666 5566677788888887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=4e-07  Score=69.61  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             CCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCcccc
Q 045653          132 PKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQV  211 (272)
Q Consensus       132 ~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~  211 (272)
                      ++++.|+|+++++..+...   ..+..+++|++|++.+ +.+..+ +...+..+++|++|+++++ +++.++..  .   
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~-N~i~~~-~~~~~~~~~~L~~L~Ls~N-~l~~l~~~--~---   97 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGEN-KIKEISNK--M---   97 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSS--S---
T ss_pred             CCCCEEEeCCCCCcccccc---cccCCCceEeeeeccc-cccccc-cccccccccccceeeeccc-cccccCHH--H---
Confidence            4566666666655431111   1234556666666655 233333 3344555666666666654 45555421  1   


Q ss_pred             CCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          212 TPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       212 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                        ...+++|++|++++. +++.++.+.+ ..+++|+++++.+.+
T Consensus        98 --F~~l~~L~~L~L~~N-~l~~i~~~~f-~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          98 --FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP  137 (192)
T ss_dssp             --STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred             --HhCCCcccccccCCc-cccccCHHHh-cCCcccccccccccc
Confidence              122466666666653 5665555432 355666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=9.4e-07  Score=62.59  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDT  207 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~  207 (272)
                      +..+++|++|++++++++.+.     ..+..+++|+.|++.+ +.++.+ +  .+..+++|++|++.++ .+..+...+ 
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp-----~~~~~l~~L~~L~l~~-N~i~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~~~-   84 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALP-----PALAALRCLEVLQASD-NALENV-D--GVANLPRLQELLLCNN-RLQQSAAIQ-   84 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCC-----GGGGGCTTCCEEECCS-SCCCCC-G--GGTTCSSCCEEECCSS-CCCSSSTTG-
T ss_pred             cccCCCCCEEECCCCccCcch-----hhhhhhhccccccccc-cccccc-C--ccccccccCeEECCCC-ccCCCCCch-
Confidence            456667777777777665531     1234567777777776 455555 2  3566777777777664 344333111 


Q ss_pred             ccccCCccCCCccCeeecccccccccccCC--CccccCCCcCEE
Q 045653          208 AIQVTPCFVFPRVSTLRLIDLPKLRFFYPG--MHTSEWPTLQSL  249 (272)
Q Consensus       208 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~~L~~L  249 (272)
                           ....+++|+.|++++. .++..+..  .....+|+|++|
T Consensus        85 -----~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          85 -----PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -----GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -----hhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence                 1223467777777653 34333321  112345555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=6.1e-07  Score=63.61  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=71.2

Q ss_pred             cEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCc
Q 045653          135 EALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPC  214 (272)
Q Consensus       135 ~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~  214 (272)
                      +.|+++++++..+ +     .+..+++|++|++++ ++++.+ |. .+..+++|+.|+++++ .++.++   +      +
T Consensus         1 R~L~Ls~n~l~~l-~-----~l~~l~~L~~L~ls~-N~l~~l-p~-~~~~l~~L~~L~l~~N-~i~~l~---~------~   61 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-----HLEQLLLVTHLDLSH-NRLRAL-PP-ALAALRCLEVLQASDN-ALENVD---G------V   61 (124)
T ss_dssp             SEEECTTSCCSSC-C-----CGGGGTTCCEEECCS-SCCCCC-CG-GGGGCTTCCEEECCSS-CCCCCG---G------G
T ss_pred             CEEEcCCCCCCCC-c-----ccccCCCCCEEECCC-CccCcc-hh-hhhhhhcccccccccc-cccccC---c------c
Confidence            4678888866652 1     244688999999987 567776 53 4678999999999985 565553   1      2


Q ss_pred             cCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          215 FVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       215 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ..+++|++|++++. ++++++.......+++|+.|++++.+
T Consensus        62 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          62 ANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             TTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            33589999999885 67766543223678899999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.14  E-value=7.3e-05  Score=61.27  Aligned_cols=41  Identities=22%  Similarity=0.068  Sum_probs=32.2

Q ss_pred             CCccCeeecccccccccccCCCccccCCCcCEEeecCCCCCccccccc
Q 045653          217 FPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCDNLKIFGSEL  264 (272)
Q Consensus       217 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~  264 (272)
                      +++|++|++++| +++.++.     .+++|++|++++| +++++|...
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~~~  323 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPELP  323 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCCCC
T ss_pred             CCCCCEEECCCC-ccCcccc-----ccCCCCEEECCCC-cCCcccccc
Confidence            579999999997 6777664     3689999999877 688877543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.4e-06  Score=60.22  Aligned_cols=91  Identities=13%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             cccccCCCCCccEEEeccc-cceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCccee
Q 045653          124 LFNDKVRLPKLEALELHEI-NVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGI  202 (272)
Q Consensus       124 ~~~~~~~l~~L~~L~L~~~-~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~  202 (272)
                      ++..+..+++|++|++.++ .++.+...    .|..+++|+.|++.+ ++++.+ +...+..+++|+.|++++. +++.+
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~-N~l~~i-~~~~f~~l~~L~~L~Ls~N-~l~~l   95 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVK-SGLRFV-APDAFHFTPRLSRLNLSFN-ALESL   95 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCS-SCCCEE-CTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred             CcccccCccccCeeecCCCccccccCch----hhccccccCcceeec-cccCCc-ccccccccccccceeccCC-CCccc
Confidence            4444566788999999877 58876554    356789999999988 467777 6567888999999999885 46666


Q ss_pred             eccCCccccCCccCCCccCeeeccccc
Q 045653          203 ISEDTAIQVTPCFVFPRVSTLRLIDLP  229 (272)
Q Consensus       203 ~~~~~~~~~~~~~~l~~L~~L~l~~c~  229 (272)
                      +  .+....      .+|+.|++.+.+
T Consensus        96 ~--~~~~~~------~~l~~L~L~~Np  114 (156)
T d2ifga3          96 S--WKTVQG------LSLQELVLSGNP  114 (156)
T ss_dssp             C--STTTCS------CCCCEEECCSSC
T ss_pred             C--hhhhcc------ccccccccCCCc
Confidence            5  222222      568888887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.99  E-value=1.4e-07  Score=72.79  Aligned_cols=105  Identities=21%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCc
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTA  208 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~  208 (272)
                      ..+++|+.|++++|.++.+ +.    ....+++|+.|++.++ .++.+   ..+..+++|+.|+++++ .++.+....  
T Consensus        67 ~~l~~L~~L~Ls~N~i~~i-~~----~~~~~~~L~~L~l~~N-~i~~l---~~~~~l~~L~~L~L~~N-~i~~~~~~~--  134 (198)
T d1m9la_          67 SGMENLRILSLGRNLIKKI-EN----LDAVADTLEELWISYN-QIASL---SGIEKLVNLRVLYMSNN-KITNWGEID--  134 (198)
T ss_dssp             HHHTTCCEEECCEEEECSC-SS----HHHHHHHCCEEECSEE-ECCCH---HHHHHHHHSSEEEESEE-ECCCHHHHH--
T ss_pred             cCCccccChhhcccccccc-cc----cccccccccccccccc-ccccc---ccccccccccccccccc-hhccccccc--
Confidence            4578999999999877653 11    1223568999999874 66666   45778899999999886 344432111  


Q ss_pred             cccCCccCCCccCeeecccccccccccCCC---------ccccCCCcCEEe
Q 045653          209 IQVTPCFVFPRVSTLRLIDLPKLRFFYPGM---------HTSEWPTLQSLE  250 (272)
Q Consensus       209 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---------~~~~~~~L~~L~  250 (272)
                          .+..+++|+.|++++++ +.......         ....+|+|+.|+
T Consensus       135 ----~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         135 ----KLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ----HHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ----cccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence                12345899999998864 33322211         124577788776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.4e-05  Score=58.64  Aligned_cols=88  Identities=27%  Similarity=0.289  Sum_probs=55.9

Q ss_pred             CCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeeccccccccccc
Q 045653          156 FPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFY  235 (272)
Q Consensus       156 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  235 (272)
                      ++.+++|++|++.+.+.++.+ +...+.++++|+.|++.++ ++..+..  ..     ...+++|+.|++++. +++.++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N-~l~~i~~--~~-----f~~l~~L~~L~Ls~N-~l~~l~   96 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAP--DA-----FHFTPRLSRLNLSFN-ALESLS   96 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSS-CCCEECT--TG-----GGSCSCCCEEECCSS-CCSCCC
T ss_pred             ccCccccCeeecCCCcccccc-CchhhccccccCcceeecc-ccCCccc--cc-----ccccccccceeccCC-CCcccC
Confidence            445677777777766667766 5556677777777777775 4666542  11     222477777777764 677776


Q ss_pred             CCCccccCCCcCEEeecCCC
Q 045653          236 PGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       236 ~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ...  .....|++|++.+.+
T Consensus        97 ~~~--~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          97 WKT--VQGLSLQELVLSGNP  114 (156)
T ss_dssp             STT--TCSCCCCEEECCSSC
T ss_pred             hhh--hccccccccccCCCc
Confidence            655  233467777777644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.86  E-value=1.8e-07  Score=72.12  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             cccCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecCCCcceeecc
Q 045653          126 NDKVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       126 ~~~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      ..+..+++|+.|++++++++.+ +     .+..+++|++|++.++ .++++ + .....+++|+.|++.++ .++.+.  
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-----~l~~l~~L~~L~Ls~N-~i~~i-~-~~~~~~~~L~~L~l~~N-~i~~l~--  109 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-----SLSGMENLRILSLGRN-LIKKI-E-NLDAVADTLEELWISYN-QIASLS--  109 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-----CHHHHTTCCEEECCEE-EECSC-S-SHHHHHHHCCEEECSEE-ECCCHH--
T ss_pred             hHHhcccccceeECcccCCCCc-c-----cccCCccccChhhccc-ccccc-c-ccccccccccccccccc-cccccc--
Confidence            3456789999999999977763 1     2447899999999985 46666 3 23455778999999986 465542  


Q ss_pred             CCccccCCccCCCccCeeecccccccccccCCCccccCCCcCEEeecCCC
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~c~  255 (272)
                       +      ...+++|+.|+++++ ++++++.-.....+++|+.|++++++
T Consensus       110 -~------~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         110 -G------IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -H------HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             -c------ccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence             1      223489999999886 56665431112578999999999864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.89  E-value=5.3e-05  Score=62.63  Aligned_cols=120  Identities=15%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCcccc----chHHHhccccCcEEEeecCCCcceeecc
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLF----SASMIRSVEQLQHLDICLCKGLLGIISE  205 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l~~~~~~  205 (272)
                      ..+.|+.+.+.++++.......+...+..+++|++|++.+|. +.+..    ....+...++|+.|+++++. +......
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~  233 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS  233 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-ccccccc
Confidence            456777777776633221111111112346788888888754 33210    11224567788888888763 3221100


Q ss_pred             CCccccCCccCCCccCeeecccccccccccCCCc-----cccCCCcCEEeecCCC
Q 045653          206 DTAIQVTPCFVFPRVSTLRLIDLPKLRFFYPGMH-----TSEWPTLQSLEATGCD  255 (272)
Q Consensus       206 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-----~~~~~~L~~L~i~~c~  255 (272)
                      . ..  ..+...++|++|++++| .+++.....+     ....+.|++|+++++.
T Consensus       234 ~-L~--~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         234 A-LA--IALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             H-HH--HHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             c-cc--ccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            0 00  11223488899999887 3443322111     1234678899998874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00015  Score=61.33  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             CCcceeeecccccccccccccccccccCCccEEEEccCccceeecCCCccccce-eccccCeEEecCCCCccccccCccc
Q 045653           10 PLLESLTLHNLINLERICIDRLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG-IFAQISCLSLGNLPQLTSFCREVKR   88 (272)
Q Consensus        10 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~   88 (272)
                      ++|++|++++ .++.+. ........+++++.|++.+|. +...+..... ..+ .+++|+.|+++++ .+.+...    
T Consensus         2 ~~l~~ld~~~-~~i~~~-~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~-~~L~~~~~L~~LdLs~N-~i~~~~~----   72 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDA-RWAELLPLLQQCQVVRLDDCG-LTEARCKDIS-SALRVNPALAELNLRSN-ELGDVGV----   72 (460)
T ss_dssp             EEEEEEEEES-CCCCHH-HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHH-HHHHTCTTCCEEECTTC-CCHHHHH----
T ss_pred             CCCCEEEeeC-CcCChH-HHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHH-HHHhcCCCCCEEECcCC-cCChHHH----
Confidence            4689999964 666554 212333468999999999993 4432211100 011 4789999999875 3432100    


Q ss_pred             cccccccccccccccceeecceeeeccCCCCccccccccc-CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEE
Q 045653           89 HSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDK-VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVV  167 (272)
Q Consensus        89 ~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i  167 (272)
                                                       ..+...+ ...++|++|++.+|++.......++..+..+++|++|++
T Consensus        73 ---------------------------------~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1          73 ---------------------------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             ---------------------------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             ---------------------------------HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccc
Confidence                                             0121122 234589999999996654221112223456899999999


Q ss_pred             ecCcCCcc
Q 045653          168 SNCHKLKY  175 (272)
Q Consensus       168 ~~c~~l~~  175 (272)
                      .++. +.+
T Consensus       120 ~~N~-i~~  126 (460)
T d1z7xw1         120 SDNL-LGD  126 (460)
T ss_dssp             CSSB-CHH
T ss_pred             cccc-chh
Confidence            8854 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00011  Score=62.34  Aligned_cols=97  Identities=19%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CCCCcceeeecccccccccccc--cccccccCCccEEEEccCccceeecCCCccccce--eccccCeEEecCCCCccccc
Q 045653            8 AFPLLESLTLHNLINLERICID--RLKVDSFNELKTIKVESCDEIFAIGGEADVVTEG--IFAQISCLSLGNLPQLTSFC   83 (272)
Q Consensus         8 ~~~~L~~L~L~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~   83 (272)
                      .+++++.|.|.+|. +++....  ......+++|++|+++++. +...+..... ..+  ..++|++|++++|. +++..
T Consensus        25 ~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-it~~~  100 (460)
T d1z7xw1          25 LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVL-QGLQTPSCKIQKLSLQNCC-LTGAG  100 (460)
T ss_dssp             HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHH-HTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred             hCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHH-HHHhcCCCCCCEEECCCCC-ccccc
Confidence            45789999999984 4432110  1223568999999999873 4321110000 000  12579999999873 44311


Q ss_pred             cCccccccccccccccccccceeecceeeeccCCCCcccccccccCCCCCccEEEeccccce
Q 045653           84 REVKRHSISSNTKDSQDQSMTAITCSYEVNLEDKLDTSTTLFNDKVRLPKLEALELHEINVE  145 (272)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~  145 (272)
                                                           ...++..+..+++|++|++.++.+.
T Consensus       101 -------------------------------------~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         101 -------------------------------------CGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             -------------------------------------HHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             -------------------------------------cccccchhhccccccccccccccch
Confidence                                                 0123444567899999999998544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.16  E-value=9.2e-05  Score=61.09  Aligned_cols=125  Identities=17%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             cccccCCCCCccEEEeccccceEeccCC----C-----CCCCCCCCCcCEEEEecCcCCcccc---chHHHhccccCcEE
Q 045653          124 LFNDKVRLPKLEALELHEINVEKIWRSQ----V-----PAKFPRFQSLTRLVVSNCHKLKYLF---SASMIRSVEQLQHL  191 (272)
Q Consensus       124 ~~~~~~~l~~L~~L~L~~~~l~~i~~~~----~-----~~~~~~l~~L~~L~i~~c~~l~~l~---~~~~~~~l~~L~~L  191 (272)
                      +...+...++|+.|++.+|.+.......    +     .......+.|+.+.+.+. .+.+-.   -...+...+.|+.|
T Consensus       113 l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         113 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             hhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhhhccc
Confidence            3334456789999999988442210000    0     000123578899988773 333320   11235567899999


Q ss_pred             EeecCCCcceeeccCCccccCCccCCCccCeeecccccccccc-----cCCCccccCCCcCEEeecCCC
Q 045653          192 DICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFF-----YPGMHTSEWPTLQSLEATGCD  255 (272)
Q Consensus       192 ~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~L~~L~i~~c~  255 (272)
                      ++.+|. +.........  .......++|+.|+++++. ++..     ....  ..++.|++|++++|.
T Consensus       192 ~L~~n~-i~~~g~~~~l--~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l--~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         192 KMVQNG-IRPEGIEHLL--LEGLAYCQELKVLDLQDNT-FTHLGSSALAIAL--KSWPNLRELGLNDCL  254 (344)
T ss_dssp             ECCSSC-CCHHHHHHHH--HTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHG--GGCTTCCEEECTTCC
T ss_pred             cccccc-ccccccccch--hhhhcchhhhccccccccc-ccccccccccccc--cccccchhhhhhcCc
Confidence            998873 4321100000  0123345899999998863 4332     2222  578999999999995

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.00021  Score=52.38  Aligned_cols=63  Identities=17%  Similarity=0.104  Sum_probs=32.4

Q ss_pred             CCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCcCCccccchHHHhccccCcEEEeecC
Q 045653          130 RLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCHKLKYLFSASMIRSVEQLQHLDICLC  196 (272)
Q Consensus       130 ~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  196 (272)
                      .+++|+.|++++|++..+.+  ++..+..+++|+.|++++ +.++++ +.-......+|+.|++.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~-N~i~~l-~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTT-SCCCCG-GGHHHHTTCCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCccccCCch--hHHHHhhCCccccccccc-Cccccc-hhhhhhhccccceeecCCC
Confidence            46777777777776655311  111122456666666665 444554 2211222334566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.86  E-value=0.0018  Score=47.42  Aligned_cols=43  Identities=14%  Similarity=0.064  Sum_probs=19.7

Q ss_pred             cCCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecC
Q 045653          128 KVRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNC  170 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c  170 (272)
                      +...++|++|+|++|.+.......+-..+...++|++|++.+|
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            3445667777777664432111110001123455666666654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.85  E-value=0.002  Score=46.98  Aligned_cols=12  Identities=8%  Similarity=-0.025  Sum_probs=6.2

Q ss_pred             ccccCeEEecCC
Q 045653           65 FAQISCLSLGNL   76 (272)
Q Consensus        65 l~~L~~L~l~~c   76 (272)
                      .++|++|++++|
T Consensus        45 n~~L~~L~Ls~n   56 (166)
T d1io0a_          45 NTYVKKFSIVGT   56 (166)
T ss_dssp             CCSCCEEECTTS
T ss_pred             CCccCeeeccCC
Confidence            345555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.56  E-value=0.0049  Score=44.95  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=33.2

Q ss_pred             CCCCCccEEEeccccceEeccCCCCCCCCCCCCcCEEEEecCc--CCcccc---chHHHhccccCcEEEeec
Q 045653          129 VRLPKLEALELHEINVEKIWRSQVPAKFPRFQSLTRLVVSNCH--KLKYLF---SASMIRSVEQLQHLDICL  195 (272)
Q Consensus       129 ~~l~~L~~L~L~~~~l~~i~~~~~~~~~~~l~~L~~L~i~~c~--~l~~l~---~~~~~~~l~~L~~L~i~~  195 (272)
                      ...+.|+.|+|.+|++.......+-..+...++|++|++.++.  .+.+-.   -...+..-++|++|++.+
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            3456778888877744331111000123356778888776532  121100   012334457777777655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.0086  Score=43.30  Aligned_cols=85  Identities=21%  Similarity=0.188  Sum_probs=53.0

Q ss_pred             CCCCcCEEEEecCcCCccccc-hHHHhccccCcEEEeecCCCcceeeccCCccccCCccCCCccCeeecccccccccccC
Q 045653          158 RFQSLTRLVVSNCHKLKYLFS-ASMIRSVEQLQHLDICLCKGLLGIISEDTAIQVTPCFVFPRVSTLRLIDLPKLRFFYP  236 (272)
Q Consensus       158 ~l~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  236 (272)
                      .+++|++|++++ ++++++.+ ...+..+++|+.|+++++ .+..+..... .      ...+|+.|++.+.+--.....
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~-l------~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK-I------KGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHH-H------TTCCCSSCCCTTSTTSSSSSS
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccC-ccccchhhhh-h------hccccceeecCCCCcCcCccc
Confidence            478999999998 45666522 234678999999999985 4655442111 1      125789999987643222111


Q ss_pred             C-----CccccCCCcCEEee
Q 045653          237 G-----MHTSEWPTLQSLEA  251 (272)
Q Consensus       237 ~-----~~~~~~~~L~~L~i  251 (272)
                      .     .+...+|+|+.|+-
T Consensus       134 ~~~y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLDG  153 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEETT
T ss_pred             chhHHHHHHHHCCCCCEECc
Confidence            1     12356888888873

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.31  E-value=0.01  Score=42.99  Aligned_cols=16  Identities=0%  Similarity=-0.091  Sum_probs=9.1

Q ss_pred             cCCCCCccEEEecccc
Q 045653          128 KVRLPKLEALELHEIN  143 (272)
Q Consensus       128 ~~~l~~L~~L~L~~~~  143 (272)
                      +...++|++|++++|.
T Consensus        42 l~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             HTTCCSCCEEECTTSC
T ss_pred             HhcCCccCeeeccCCc
Confidence            3445566666666663