Citrus Sinensis ID: 045659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MAEIQQSLSTDARTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
cccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
MAEIQQSLSTDARTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAicpiicipWIFMNKLLLtlgqdplvshnaqkysLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPyvmysssckdTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILssgflpnprletsglSICLAITTLHFiipygigaaastrvsnelgagnpEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGvsrgcgwqhiGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
maeiqqslstdartastrlVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
MAEIQQSLSTDARTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVgfsflsglagglETLCGQAFGAQQYQRLGIHTNsaiisliaicpiicipwiFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGaaaaFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYlvglpvggvlgfvvhlrgKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
****************TRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGA***EAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNW***
*******************VLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
************RTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
***************STRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNK*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
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MAEIQQSLSTDARTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query461 2.2.26 [Sep-21-2011]
Q8GXM8476 MATE efflux family protei yes no 0.952 0.922 0.555 1e-138
Q8RWF5483 MATE efflux family protei no no 0.950 0.906 0.550 1e-138
Q9SIA4476 MATE efflux family protei no no 0.952 0.922 0.555 1e-134
Q9SIA1477 MATE efflux family protei no no 0.950 0.918 0.525 1e-133
Q9SIA5476 MATE efflux family protei no no 0.941 0.911 0.539 1e-133
Q9SIA3476 MATE efflux family protei no no 0.952 0.922 0.542 1e-132
Q9LUH2477 MATE efflux family protei no no 0.960 0.928 0.384 2e-82
Q9LUH3469 MATE efflux family protei no no 0.937 0.921 0.392 9e-79
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.984 0.895 0.334 2e-71
Q8K0H1 567 Multidrug and toxin extru yes no 0.956 0.777 0.300 4e-56
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  493 bits (1269), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/439 (55%), Positives = 320/439 (72%)

Query: 23  GEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSF 82
           G+   E KK+SR+AAPM  + +  YLL V+S M+ GH+G+L+LA VA+ATS TNV GFS 
Sbjct: 22  GQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSI 81

Query: 83  LSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDP 142
           + GL G LETLCGQA+GA+QY+++G +T SA+ S I IC II I WI++ KLL+TLGQ+P
Sbjct: 82  MFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEP 141

Query: 143 LVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFK 202
            +S  A  YSL L+PALFA+AI  P+TRF+  Q L+  +L +    L FHI VCW LVF 
Sbjct: 142 DISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFA 201

Query: 203 LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSAL 262
           L LG  GAA A SLS W   V++S +V + SSC+ TR  +S +   +IKQ+F +G+PSA 
Sbjct: 202 LGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAG 261

Query: 263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGA 322
           ++CL WW  E+LIL SG LPNP+LETS LSICL I TLH++IP G+ AA STRVSN+LGA
Sbjct: 262 LICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNKLGA 321

Query: 323 GNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSI 382
           GNP+ AR +  + + +  +E+   ST+LF+CR I+GY +SN K+VVD++A ++PL+CLS 
Sbjct: 322 GNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSF 381

Query: 383 ILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGS 442
           ILD L AV  GV+RGCGWQHIGA IN VA+YLVG PVG  L F     GKGLW G++VGS
Sbjct: 382 ILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVGS 441

Query: 443 AVQSTMLCLITCFTNWNKQ 461
           AVQ+T+L ++T   NW +Q
Sbjct: 442 AVQATLLAIVTASMNWKEQ 460

Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
255574294470 TRANSPARENT TESTA 12 protein, putative [ 1.0 0.980 0.624 1e-161
224077218475 predicted protein [Populus trichocarpa] 0.947 0.92 0.645 1e-158
359488145494 PREDICTED: MATE efflux family protein 5- 0.952 0.888 0.630 1e-156
147782271489 hypothetical protein VITISV_044050 [Viti 0.952 0.897 0.628 1e-155
219921318470 putative MATE transporter [Nicotiana tab 0.943 0.925 0.6 1e-154
357508229479 Protein TRANSPARENT TESTA [Medicago trun 0.947 0.912 0.597 1e-153
388497886485 unknown [Medicago truncatula] 0.945 0.898 0.598 1e-153
356567250462 PREDICTED: MATE efflux family protein DT 0.943 0.941 0.611 1e-152
356515374480 PREDICTED: MATE efflux family protein DT 0.943 0.906 0.611 1e-152
296087229501 unnamed protein product [Vitis vinifera] 0.902 0.830 0.641 1e-151
>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/461 (62%), Positives = 353/461 (76%)

Query: 1   MAEIQQSLSTDARTASTRLVLVGEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHL 60
           M ++ +S +          +  G F++E KK S IAAPMV + +  YLLQVVS MMVGHL
Sbjct: 1   MVQLMESGAEAGSEEKKWAITWGGFMEELKKESYIAAPMVVVSVLQYLLQVVSVMMVGHL 60

Query: 61  GQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAI 120
           G+L L+SVAIATS+TN VGFS LSG+AGG+ETLCGQA+GAQQY +LG +T SAIISL+ +
Sbjct: 61  GELALSSVAIATSLTNAVGFSLLSGMAGGVETLCGQAYGAQQYHKLGTYTFSAIISLVMV 120

Query: 121 CPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICP 180
           CP IC+ WIFM++LL  +GQD  +S+ A KYS+ LIPALF +AIL+P+TRF+QTQS+I P
Sbjct: 121 CPPICLLWIFMDRLLPLIGQDSEISNQACKYSIWLIPALFGSAILKPVTRFLQTQSVIFP 180

Query: 181 MLITYFCILCFHIPVCWILVFKLKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRA 240
           ML++   IL FH   CW  V+KL+LG  G A AFSLS WLNV+L+  Y+ YSS+C  TR+
Sbjct: 181 MLLSSLFILFFHTLACWTFVYKLELGYKGPALAFSLSVWLNVILLGFYIKYSSACNKTRS 240

Query: 241 KLSKEAFLAIKQFFAFGLPSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTL 300
            LSK AF  + +FF  G+PSA+M+CL+WWSME+L L SG LPNP+LETS LSICL I+TL
Sbjct: 241 PLSKHAFYGVGEFFRLGVPSAVMVCLKWWSMELLTLLSGLLPNPKLETSVLSICLTISTL 300

Query: 301 HFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYA 360
           HF IPYG GAAASTRVSNELGAGNP++AR A   A+ +A  EA I S  +F  R ++GYA
Sbjct: 301 HFTIPYGFGAAASTRVSNELGAGNPQSARLAVMVAICLAGAEAAIVSATVFFSRHVLGYA 360

Query: 361 YSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVG 420
           YSN+KQVV+++A M PLICLS ILD+L AV  GV+RGCGWQ IGA IN  AFYLVGLPVG
Sbjct: 361 YSNNKQVVNYVAIMAPLICLSFILDSLQAVLSGVARGCGWQKIGAYINLGAFYLVGLPVG 420

Query: 421 GVLGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNKQ 461
            VLGFV HL+GKGLW GI+ GS VQST+L LIT  TNW KQ
Sbjct: 421 AVLGFVSHLKGKGLWIGIIAGSIVQSTLLSLITGSTNWKKQ 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147782271|emb|CAN69572.1| hypothetical protein VITISV_044050 [Vitis vinifera] Back     alignment and taxonomy information
>gi|219921318|emb|CAQ51477.1| putative MATE transporter [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|357508229|ref|XP_003624403.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355499418|gb|AES80621.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|388497886|gb|AFK37009.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356567250|ref|XP_003551834.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|296087229|emb|CBI33603.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.952 0.922 0.487 1.4e-112
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.952 0.922 0.485 6.1e-110
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.947 0.904 0.485 1e-109
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.941 0.911 0.472 2.7e-107
TAIR|locus:2050225476 AT2G04070 "AT2G04070" [Arabido 0.952 0.922 0.471 1.1e-105
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.952 0.912 0.457 5.8e-105
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.947 0.901 0.455 7.7e-103
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.952 0.901 0.432 3.3e-102
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.952 0.910 0.444 4.9e-101
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.952 0.901 0.428 7.1e-100
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 214/439 (48%), Positives = 288/439 (65%)

Query:    23 GEFVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVXXXX 82
             G+   E KK+SR+AAPM  + +  YLL V+S M+ GH+G+L+LA VA+ATS TNV     
Sbjct:    22 GQVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSI 81

Query:    83 XXXXXXXXETLCGQAFGAQQYQRLGIHTNXXXXXXXXXXXXXXXXXXFMNKLLLTLGQDP 142
                     ETLCGQA+GA+QY+++G +T                   ++ KLL+TLGQ+P
Sbjct:    82 MFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEP 141

Query:   143 LVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFK 202
              +S  A  YSL L+PALFA+AI  P+TRF+  Q L+  +L +    L FHI VCW LVF 
Sbjct:   142 DISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFA 201

Query:   203 LKLGILGXXXXFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSAL 262
             L LG  G     SLS W   V++S +V + SSC+ TR  +S +   +IKQ+F +G+PSA 
Sbjct:   202 LGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAG 261

Query:   263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGA 322
             ++CL WW  E+LIL SG LPNP+LETS LSICL I TLH++IP G+ AA STRVSN+LGA
Sbjct:   262 LICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNKLGA 321

Query:   323 GNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSI 382
             GNP+ AR +  + + +  +E+   ST+LF+CR I+GY +SN K+VVD++A ++PL+CLS 
Sbjct:   322 GNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSF 381

Query:   383 ILDTLHAVFQGVSRGCGWQHIGACINFVAFYXXXXXXXXXXXXXXXXXXKGLWTGIVVGS 442
             ILD L AV  GV+RGCGWQHIGA IN VA+Y                  KGLW G++VGS
Sbjct:   382 ILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVGS 441

Query:   443 AVQSTMLCLITCFTNWNKQ 461
             AVQ+T+L ++T   NW +Q
Sbjct:   442 AVQATLLAIVTASMNWKEQ 460
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050225 AT2G04070 "AT2G04070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GXM8MATE7_ARATHNo assigned EC number0.55580.95220.9222yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-162
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-53
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 5e-53
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-49
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 5e-35
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-34
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 8e-31
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-25
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-25
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-25
pfam01554161 pfam01554, MatE, MatE 6e-21
pfam01554161 pfam01554, MatE, MatE 1e-18
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 9e-18
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 7e-17
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 7e-13
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-12
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-11
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 6e-11
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 9e-11
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-09
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-09
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 1e-06
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 4e-06
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 8e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-05
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-04
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 0.001
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 0.001
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 0.002
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  465 bits (1199), Expect = e-162
 Identities = 193/434 (44%), Positives = 280/434 (64%), Gaps = 1/434 (0%)

Query: 28  EFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLA 87
           E KKL R+AAP+V   L  Y L VVS + VGHLG+L+LA+ ++A+S  NV GFS L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 88  GGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHN 147
             L+TLCGQAFGA+ Y+ +G++   A++ L+  C  I + W+    +LL LGQDP ++  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 148 AQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKLKLGI 207
           A +Y   LIP LFA A+ +P+ R++Q Q ++ P++      L  +I + ++LVF L LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 208 LGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTRAKLSKEAFLAIKQFFAFGLPSALMLCLR 267
           +GAA A S+S WL VVL+  Y+ +S   K T    S+EAF     F    +PSALMLCL 
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 268 WWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEA 327
           WW+ E+L+L +G LP   +  +  SICL  T+L ++IP GI  AAS RV NELGAGNP+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 328 ARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTL 387
           A+ AA  A+ ++ +  V+ + +L   R +  Y +++D++V+  +A + P++ L  I D L
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 388 HAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFVVHLRGKGLWTGIVVGSAVQST 447
            AV  GV RGCG Q +GA +N VA+YL+GLPVG +L FV+ L  KGLW G++ G  +Q+ 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 448 MLCLITCFTNWNKQ 461
           +L LI   T+W+K+
Sbjct: 420 ILLLIILRTDWDKE 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.97
PRK00187464 multidrug efflux protein NorA; Provisional 99.9
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.9
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
PRK01766456 multidrug efflux protein; Reviewed 99.89
TIGR01695502 mviN integral membrane protein MviN. This model re 99.85
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.82
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.8
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.8
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.78
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.75
PRK10459492 colanic acid exporter; Provisional 99.72
PRK15099416 O-antigen translocase; Provisional 99.69
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.68
COG2244480 RfbX Membrane protein involved in the export of O- 99.62
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.4
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.31
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.17
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.93
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.58
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.49
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.24
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.19
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.12
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.96
COG4267467 Predicted membrane protein [Function unknown] 97.63
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.41
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-57  Score=439.24  Aligned_cols=430  Identities=25%  Similarity=0.363  Sum_probs=411.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659           27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL  106 (461)
Q Consensus        27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~  106 (461)
                      +..|+++++++|.+++++.+.+++.+|+.++||+|++++++.+++.++..+. ..+..|++.++++.+||++|+||++++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            6899999999999999999999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 045659          107 GIHTNSAIISLIAICPIICIP-WIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITY  185 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  185 (461)
                      ++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++....+.+|+.||+|.+++.+
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~  172 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL  172 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            999999999999999888876 9999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhcCcc-cchhccCCCHHHHHHHHHHHHHhhHHHH
Q 045659          186 FCILCFHIPVCWILVFK-LK-LGILGAAAAFSLSTWLNVVLVSPYVMYSSS-CKDTRAKLSKEAFLAIKQFFAFGLPSAL  262 (461)
Q Consensus       186 ~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~~~  262 (461)
                      +.+.++|+++|++++++ ++ +|+.|+++||++++.+..++..+++.|+++ ......+..+.+++.+|++++.|+|.++
T Consensus       173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~  252 (455)
T COG0534         173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL  252 (455)
T ss_pred             HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence            99999999999999998 56 999999999999999999999999987764 2222233335568999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 045659          263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVATLE  342 (461)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (461)
                      ++......+...+.+.+++|  ++.+|+|+++.++.++..+++.+++++..|.+++++|+||.|++++..+.+.++++.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~  330 (455)
T COG0534         253 ESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI  330 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHHHH
Q 045659          343 AVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGV  422 (461)
Q Consensus       343 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~  422 (461)
                      +...+.+++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.++|.||+|.+++.++.+.|.+.+|+.++
T Consensus       331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~  410 (455)
T COG0534         331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYL  410 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCchhHhhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045659          423 LGFVVHLRGKGLWTGIVVGSAVQSTMLCLITCFTNWNK  460 (461)
Q Consensus       423 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w~~  460 (461)
                      +...+ +|..|+|++..+++.+..++..++++|++|++
T Consensus       411 l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~  447 (455)
T COG0534         411 LGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR  447 (455)
T ss_pred             Hhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            98775 79999999999999999999999999999975

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 133/316 (42%), Gaps = 25/316 (7%)
Query: 151 YSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKL----KLG 206
           Y   +I A+ A  + Q +  F    SL  P ++  F  L  +IP+ WI V+      +LG
Sbjct: 132 YMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELG 191
Query: 207 ILGXXXXFSLSTWLNVVLVSPYVMYSSSCKDTRA--KLSKEAFLAIKQFFAFGLP--SAL 262
            +G     ++  W+ ++L+  Y++ S      +      K     + + F  G P  +AL
Sbjct: 192 GVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAAL 251
Query: 263 MLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGA 322
              +  +++  L+++    P      +   + L  ++L F+ P  IGAA S RV ++LG 
Sbjct: 252 FFEVTLFAVVALLVA----PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307
Query: 323 GNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSI 382
            + + A  AA   +      A I + +    R  +   Y+ ++ VV    AM  L+  +I
Sbjct: 308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVAL--AMQLLLFAAI 365
Query: 383 I--LDTLHAVFQGVSRGCGWQHIGACIN--FVAFYXXXXXXXXXX-----XXXXXXXXKG 433
              +D +  V  G  RG  ++ + A  +  F++++                       KG
Sbjct: 366 YQCMDAVQVVAAGSLRG--YKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423
Query: 434 LWTGIVVGSAVQSTML 449
            W G ++G +  + ML
Sbjct: 424 FWLGFIIGLSAAALML 439

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-91
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  283 bits (725), Expect = 5e-91
 Identities = 97/438 (22%), Positives = 182/438 (41%), Gaps = 14/438 (3%)

Query: 25  FVKEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLS 84
           + KE   L ++A P++   +    +  V T+M G +  + +A+V+IA S+       F  
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGV 65

Query: 85  GLAGGLETLCGQAFGAQQYQRLGIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLV 144
           GL   L  +  Q  GA +  ++    +  +I  + +   I         ++  +  +  +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 145 SHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYFCILCFHIPVCWILVFKL- 203
           +     Y   +I A+ A  + Q +  F    SL  P ++  F  L  +IP+ WI V+   
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 204 ---KLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKDTR--AKLSKEAFLAIKQFFAFGL 258
              +LG +G   A ++  W+ ++L+  Y++ S      +      K     + + F  G 
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 259 PSALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSN 318
           P A  L        ++ L    L +  +  +   + L  ++L F+ P  IGAA S RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 319 ELGAGNPEAARRAAWSAVFVATLEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLI 378
           +LG  + + A  AA   +      A I + +    R  +   Y+ ++ VV     +    
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 379 CLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVGGVLGFV-----VHLRGKG 433
            +   +D +  V  G  RG           F++++++GLP G +LG         L  KG
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKG 423

Query: 434 LWTGIVVGSAVQSTMLCL 451
            W G ++G +  + ML  
Sbjct: 424 FWLGFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 94.31
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 92.34
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.9e-50  Score=394.41  Aligned_cols=429  Identities=23%  Similarity=0.346  Sum_probs=397.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHhhCCcchhhH
Q 045659           27 KEFKKLSRIAAPMVGIFLFDYLLQVVSTMMVGHLGQLQLASVAIATSVTNVVGFSFLSGLAGGLETLCGQAFGAQQYQRL  106 (461)
Q Consensus        27 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~  106 (461)
                      +..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|+.|++|+|+.
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            7899999999999999999999999999999999999999999999998887 888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 045659          107 GIHTNSAIISLIAICPIICIPWIFMNKLLLTLGQDPLVSHNAQKYSLCLIPALFANAILQPITRFMQTQSLICPMLITYF  186 (461)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  186 (461)
                      ++.+++++.+..+.+++.+++..+.++++.+++.|++..+.+..|+++..++.++..+.....+.+|+.||++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF  167 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99999999999999999877778889999888889999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHhcCcccch-h-ccCCCHHHHHHHHHHHHHhhHH
Q 045659          187 CILCFHIPVCWILVFK----LKLGILGAAAAFSLSTWLNVVLVSPYVMYSSSCKD-T-RAKLSKEAFLAIKQFFAFGLPS  260 (461)
Q Consensus       187 ~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~~~~~~~p~  260 (461)
                      ++.++|+++++++++.    +++|+.|+++++.+++.+..++..++++|+++.+. + ++++.+.+++..|+++++++|.
T Consensus       168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  247 (460)
T 3mkt_A          168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV  247 (460)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHH
Confidence            9999999999999975    37999999999999999999988888776543321 1 1222234567899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 045659          261 ALMLCLRWWSMEMLILSSGFLPNPRLETSGLSICLAITTLHFIIPYGIGAAASTRVSNELGAGNPEAARRAAWSAVFVAT  340 (461)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (461)
                      ++++.........++.++++++  ++++++|+++.++.++...+..+++++..|.+++++|+||.+++++..+++.++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~  325 (460)
T 3mkt_A          248 AAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGL  325 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999986  88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccccCcHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhhhHH
Q 045659          341 LEAVIASTILFSCRFIVGYAYSNDKQVVDFIAAMTPLICLSIILDTLHAVFQGVSRGCGWQHIGACINFVAFYLVGLPVG  420 (461)
Q Consensus       341 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  420 (461)
                      .++++.++++.++++++..+|++|+|+.+.+..++++++++.++.+++....+++++.||+|.+++.++.+.|++++|++
T Consensus       326 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  405 (460)
T 3mkt_A          326 ATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTG  405 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888899999999999999999999999999999999999999999999989999999


Q ss_pred             HHHHHh----cC-CchhHhhHHHHHHHHHHHHHHHHHHHhcCC
Q 045659          421 GVLGFV----VH-LRGKGLWTGIVVGSAVQSTMLCLITCFTNW  458 (461)
Q Consensus       421 ~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~w  458 (461)
                      +++...    ++ +|+.|+|+++.+++.+..++..++++|...
T Consensus       406 ~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~  448 (460)
T 3mkt_A          406 YILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred             HHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999876    56 899999999999999999988877776543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00