Citrus Sinensis ID: 045670

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MDLIVSHEAADPLPSQGFSIEKNEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGTGTSCHLQRKK
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccc
ccccccccccccccccccccccccccccccccccccHHHEccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccEcccccccccHEEEEEEEEEEEEEEEEHccccccccccccccEccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccHccccc
mdlivsheaadplpsqgfsiekneimngTITRREMFLACIGfyeffspkMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTvplsgghmspVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLggcliagngtsagiSAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITvtqkpgyagvglnparclgpallhggplwkghwVFWVGPFLACVVYYGFaktlpeeglvwedKFEHDIINLARVwrngtgtschlqrkk
mdlivsheaadplpsqgfsieknEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLArvwrngtgtschlqrkk
MDLIVSHEAADPLPSQGFSIEKNEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGTGTSCHLQRKK
**********************NEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGTGTSC******
************************************LACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGL*******************************
MDLIVSHEAADPLPSQGFSIEKNEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGT**********
****VSHEAADPLPSQGFSIE*****NGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGT**********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRRoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDLIVSHEAADPLPSQGFSIEKNEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEHDIINLARVWRNGTGTSCHLQRKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.680 0.769 0.301 2e-20
Q7Y1E6280 Probable aquaporin PIP2-8 no no 0.689 0.785 0.308 4e-20
Q9SV31286 Probable aquaporin PIP2-5 yes no 0.673 0.751 0.306 5e-19
Q9XF58285 Aquaporin PIP2-5 OS=Zea m N/A no 0.667 0.747 0.305 1e-18
Q9FWV6264 Probable aquaporin TIP3-1 no no 0.645 0.780 0.334 1e-18
Q9AT75266 Aquaporin TIP3-2 OS=Zea m N/A no 0.645 0.774 0.321 1e-18
Q9ZVX8278 Probable aquaporin PIP2-8 no no 0.673 0.773 0.304 2e-18
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.680 0.769 0.312 3e-18
Q9ATL7262 Aquaporin TIP3-1 OS=Zea m N/A no 0.645 0.786 0.308 3e-18
Q8GRI8283 Aquaporin PIP2-5 OS=Oryza no no 0.673 0.759 0.3 6e-18
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function desciption
 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 22/239 (9%)

Query: 51  WRAAFTELVATAFLVFTLTTSIISCLDSHVSEQ-----KLLVPIAVFIIAFLFLMVTVPL 105
           +RA   E +AT   ++    ++I       ++Q      L +  A   + F+ +  T  +
Sbjct: 37  YRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGI 96

Query: 106 SGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCL 165
           SGGH++P  TF   L   V++ RA  Y++AQCLG IVG  I+  +M H    +Y+  G  
Sbjct: 97  SGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKH----QYNANGG- 151

Query: 166 IAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIA 224
              N  ++G S  TAL  E   TFV+++   +    KR  ++  + V+  +  G A+ + 
Sbjct: 152 -GANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMV 210

Query: 225 VFVSITVTQKPGYAGVGLNPARCLGPALLHG-GPLWKGHWVFWVGPF---LACVVYYGF 279
              +I +T      G G+NPAR +G A+++     W  HW+FW GPF   LA   Y+ +
Sbjct: 211 HLATIPIT------GTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQY 263
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q7Y1E6|PIP28_ORYSJ Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1 Back     alignment and function description
>sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1 Back     alignment and function description
>sp|Q9XF58|PIP25_MAIZE Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FWV6|TIP31_ORYSJ Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT75|TIP32_MAIZE Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q9ATL7|TIP31_MAIZE Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GRI8|PIP25_ORYSJ Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
356540958331 PREDICTED: aquaporin PIP2-5-like [Glycin 0.940 0.906 0.647 1e-103
409168116299 XIP aquaporin [Lotus japonicus] 0.871 0.929 0.638 3e-97
356544056312 PREDICTED: aquaporin TIP1-2-like [Glycin 0.902 0.923 0.587 1e-96
255637684319 unknown [Glycine max] 0.902 0.902 0.583 7e-95
388502222306 unknown [Lotus japonicus] 0.846 0.882 0.616 2e-88
224103259240 aquaporin, MIP family, PIP subfamily [Po 0.730 0.970 0.684 8e-86
255586851309 aquaporin transporter, putative [Ricinus 0.877 0.906 0.544 2e-85
255586960285 aquaporin transporter, putative [Ricinus 0.833 0.933 0.583 3e-85
449464720319 PREDICTED: probable aquaporin TIP3-1-lik 0.852 0.852 0.585 5e-84
255586958303 aquaporin transporter, putative [Ricinus 0.862 0.907 0.543 1e-83
>gi|356540958|ref|XP_003538951.1| PREDICTED: aquaporin PIP2-5-like [Glycine max] Back     alignment and taxonomy information
 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/306 (64%), Positives = 233/306 (76%), Gaps = 6/306 (1%)

Query: 1   MDLIVSHEAADPLPSQGFSIEKNEIMNGTITRREMFLACIGFYEFFSPKMWRAAFTELVA 60
           MD   SH     LP    S +   +M     +R+ F A IG +E F P+MW+AA TEL A
Sbjct: 1   MDSANSHVVVKQLPCSVQSSKPICLMGKNSLKRKCF-ASIGAHEIFRPEMWKAALTELTA 59

Query: 61  TAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAAL 120
           TA L+FTLTTSII+CLDSH  + KLLVP AVF IAFLFL+VTVPL+GGHMSPVFTFIAAL
Sbjct: 60  TASLMFTLTTSIIACLDSHEIDPKLLVPFAVFTIAFLFLIVTVPLTGGHMSPVFTFIAAL 119

Query: 121 QGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNG----TSAGIS 176
           +G+VTL RA  YVLAQC+GSI+GF I+  VM    A  YSLGGC I+G G    +S GI 
Sbjct: 120 KGVVTLTRALIYVLAQCIGSIIGFFILKCVMDPKLAYTYSLGGCAISGQGVINSSSGGIK 179

Query: 177 AETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPG 236
              AL++EFTCTFVVLFVGVT+AFDK+R ++LGL +VC +VAGAMA+AVFVSITVT + G
Sbjct: 180 PLDALLVEFTCTFVVLFVGVTLAFDKKRSRDLGLPMVCLVVAGAMALAVFVSITVTGRAG 239

Query: 237 YAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKTLPEEGLVWEDKFEH 296
           YAGVGLNPARCLGPALLHGG LW+GHWVFW+GPFLACVVYY  +  LP EGLVW D  E+
Sbjct: 240 YAGVGLNPARCLGPALLHGGLLWEGHWVFWLGPFLACVVYYAVSINLPREGLVWVDG-EY 298

Query: 297 DIINLA 302
           D++ LA
Sbjct: 299 DVLKLA 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|409168116|emb|CCI69207.1| XIP aquaporin [Lotus japonicus] Back     alignment and taxonomy information
>gi|356544056|ref|XP_003540471.1| PREDICTED: aquaporin TIP1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|255637684|gb|ACU19165.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388502222|gb|AFK39177.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224103259|ref|XP_002312986.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|222849394|gb|EEE86941.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255586851|ref|XP_002534036.1| aquaporin transporter, putative [Ricinus communis] gi|223525953|gb|EEF28349.1| aquaporin transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255586960|ref|XP_002534078.1| aquaporin transporter, putative [Ricinus communis] gi|223525885|gb|EEF28306.1| aquaporin transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449464720|ref|XP_004150077.1| PREDICTED: probable aquaporin TIP3-1-like [Cucumis sativus] gi|449489783|ref|XP_004158414.1| PREDICTED: probable aquaporin TIP3-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255586958|ref|XP_002534077.1| aquaporin transporter, putative [Ricinus communis] gi|223525884|gb|EEF28305.1| aquaporin transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.670 0.748 0.344 5.3e-24
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.689 0.791 0.336 3.8e-23
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.670 0.745 0.323 2.6e-22
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.689 0.785 0.327 3.4e-22
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.673 0.754 0.317 5.5e-22
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.673 0.754 0.313 2.4e-21
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.689 0.769 0.303 2.4e-21
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.695 0.768 0.280 4.4e-20
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.692 0.772 0.296 5.7e-20
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.689 0.766 0.294 9.2e-20
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 81/235 (34%), Positives = 119/235 (50%)

Query:    51 WRAAFTELVATA-FLVFTLTTSI--ISCLDSHVS-EQKLLVPIAVFIIAF---LFLMV-- 101
             +RA   E +AT  FL  T+ T I   S  D  ++ +Q   V +     AF   +F++V  
Sbjct:    37 YRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYC 96

Query:   102 TVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSL 161
             T  +SGGH++P  TF   L   VTL RA  Y++AQCLG+I G  ++ +  S    R Y  
Sbjct:    97 TAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTR-YG- 154

Query:   162 GGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAM 221
             GG     NG S G S  T +  E   TFV+++   +    KR  ++  + V+  +  G  
Sbjct:   155 GGA----NGLSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG-- 208

Query:   222 AIAVFVSITVTQKPGYAGVGLNPARCLGPALLHG-GPLWKGHWVFWVGPFLACVV 275
               AVF+ + +   P   G G+NPAR LG A+++     W  HW+FWVGPF    +
Sbjct:   209 -FAVFI-VHLATIP-ITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAI 260
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0006833 "water transport" evidence=RCA;IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-29
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 8e-24
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-21
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 5e-21
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-18
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 8e-14
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 2e-12
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-10
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-10
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 3e-10
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-09
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-09
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-07
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  110 bits (276), Expect = 7e-29
 Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 23/230 (10%)

Query: 44  EFFSPKMWRAAFTELVATAFLVFTLTTSIISC--LDSHVSEQKLLVPIAVFIIAFLFLMV 101
           E  S   WRA   E +AT   VF    S +    L   +    L   +A+F + +    +
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYGGLLAVALAFGLALFTLVYCTGHI 60

Query: 102 TVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSL 161
               SG H++P  TF   +   ++L RA  Y++AQ LG+I G  ++  V          L
Sbjct: 61  ----SGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVT-------NGL 109

Query: 162 GGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAGAM 221
                  N  + G++A  A ++E   TF +++  V    D  R   LG      +   A+
Sbjct: 110 QRAGGFANSLAPGVNAGQAFVVEIILTFQLVYT-VFATTDDPRNGSLG-----HVAPLAI 163

Query: 222 AIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFL 271
             AVF++        Y G  +NPAR  GPA++     W  HWV+WVGP +
Sbjct: 164 GFAVFLNHLAGGP--YTGASMNPARSFGPAVVLW--KWDDHWVYWVGPLI 209

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.52
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.48
PLN00026298 aquaporin NIP; Provisional 99.46
PLN00183274 putative aquaporin NIP7; Provisional 99.45
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.39
PLN00184 296 aquaporin NIP1; Provisional 99.39
PLN00166250 aquaporin TIP2; Provisional 99.36
PLN00167256 aquaporin TIP5; Provisional 99.29
PLN00027252 aquaporin TIP; Provisional 99.28
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.26
PTZ00016 294 aquaglyceroporin; Provisional 99.17
PRK05420231 aquaporin Z; Provisional 99.11
COG0580241 GlpF Glycerol uptake facilitator and related perme 98.92
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 98.9
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.66
COG2116265 FocA Formate/nitrite family of transporters [Inorg 91.79
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-49  Score=355.32  Aligned_cols=226  Identities=28%  Similarity=0.484  Sum_probs=187.4

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCcchHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHhc
Q 045670           43 YEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQG  122 (319)
Q Consensus        43 ~~~~~~~~~r~~~aEfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g  122 (319)
                      .+..+.+.+|++++||++|++++|++|+++..............+++.+|+.+++++++++++||||+|||||+++++.|
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~   82 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGG   82 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhC
Confidence            35567899999999999999999999998776543222233456899999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhhhhHHHHHHHHHHhhcccchhhhccCcceeecCCCCCCCcChhHHHHHHHHHHHHHHHHHHHhhccc
Q 045670          123 IVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDK  202 (319)
Q Consensus       123 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~E~~~TfiLv~~il~~~~d~  202 (319)
                      ++++.+++.|+++|++|+++|+.+.+.+.+.+...   .+.   ..+.++++.+..|+++.|++.||+|+++++...+|+
T Consensus        83 ~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~---~~~---~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~  156 (238)
T KOG0223|consen   83 KISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNR---KGL---GLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDP  156 (238)
T ss_pred             CCcHHHhHHHHHHHHHHHHHHHHHHheecCccccc---CCc---ceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecC
Confidence            99999999999999999999999999999885111   111   112234689999999999999999999998878898


Q ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccchhhHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHHhh
Q 045670          203 RRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYYGFAKT  282 (319)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~ig~~v~~~~~~~~~~~~tG~~~NPAr~lg~al~~~~~~~~~~wvywvgP~~Gai~a~l~~~~  282 (319)
                      |+.     ...++.+|+++++.+    ..+  .++||++|||||+|||+++.+  .|++|||||+||++|+++++++|++
T Consensus       157 ~~~-----~~a~l~IG~~v~~~~----l~~--g~~TG~sMNPArSfGpAvv~~--~w~~hwiYwvgP~~Ga~~a~~~y~~  223 (238)
T KOG0223|consen  157 RRS-----ELAPLAIGFSVGLNI----LAA--GPFTGASMNPARSFGPAVVYG--SWDDHWIYWVGPLLGAILAALIYRL  223 (238)
T ss_pred             CCc-----ccHHHHHHHHHHHHH----Hee--cCcCcCccCcHHHhhHHHHhc--CCCcEEEEEhhHHHHHHHHHHHHHH
Confidence            876     223344454444444    333  489999999999999999998  6999999999999999999999999


Q ss_pred             cCCCc
Q 045670          283 LPEEG  287 (319)
Q Consensus       283 ~~~~~  287 (319)
                      +....
T Consensus       224 v~~~~  228 (238)
T KOG0223|consen  224 VFIPD  228 (238)
T ss_pred             hccCc
Confidence            97654

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 3e-20
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-20
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-20
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-20
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 7e-20
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-18
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 8e-18
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-17
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 8e-17
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-16
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-15
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 5e-15
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 8e-15
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-14
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-13
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-11
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 8e-06
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 1e-05
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 3e-05
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 6e-04
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Query: 51  WRAAFTELVATA-FLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMV--TVPLSG 107
           WRAA  E +AT  FL  T+ T I    ++ V     L+ IA      +F++V  T  +SG
Sbjct: 38  WRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISG 97
Query: 108 GHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIA 167
           GH++P  TF   L   V+L RA  Y++AQCLG+I G  ++ + M          GG    
Sbjct: 98  GHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMK---GPYNQFGG---G 151
Query: 168 GNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAIVAG-AMAIAVF 226
            N  + G +  TAL  E   TFV+++   +    KR  ++  + ++  +  G A+ +   
Sbjct: 152 ANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHL 211
Query: 227 VSITVTQKPGYAGVGLNPARCLGPALL-HGGPLWKGHWVFWVGPFLACVV 275
            +I +T      G G+NPAR  G A++ +   +W   W+FWVGPF+   V
Sbjct: 212 ATIPIT------GTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAV 255
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-38
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-37
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-37
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 8e-37
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 8e-37
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-36
2o9g_A234 Aquaporin Z; integral membrane protein, structural 6e-35
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-34
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-33
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-33
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-27
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-21
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-16
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
 Score =  135 bits (342), Expect = 4e-38
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 31/245 (12%)

Query: 44  EFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLF-LMVT 102
           EF     WRA   E +A    +F    S +       S Q          ++  F L + 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 103 V------PLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAA 156
                   +SG H++P  T    L   +++ RA  Y++AQC+G+IV   I++ + S    
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP- 122

Query: 157 RRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAI 216
                    +  N  + G+++   L +E   T  ++   V    D+RR    G      +
Sbjct: 123 ------DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLC-VLATTDRRRRDLGGSG---PL 172

Query: 217 VAG-AMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPF----L 271
             G ++A+   ++I  T      G G+NPAR  G +++     ++ HW+FWVGPF    L
Sbjct: 173 AIGFSVALGHLLAIDYT------GCGINPARSFGSSVITHN--FQDHWIFWVGPFIGAAL 224

Query: 272 ACVVY 276
           A ++Y
Sbjct: 225 AVLIY 229
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.51
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.22
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.21
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.19
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.17
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.16
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.15
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.11
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.09
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.08
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.05
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.03
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.01
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=3.6e-51  Score=382.17  Aligned_cols=229  Identities=25%  Similarity=0.484  Sum_probs=183.2

Q ss_pred             cccccCcchHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--CCCcchHHHHHHHHHHHHHHHHHhccCCcccChHHHHH
Q 045670           40 IGFYEFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSH--VSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFI  117 (319)
Q Consensus        40 ~~~~~~~~~~~~r~~~aEfigTf~lvf~~~~~~~~~~~~~--~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla  117 (319)
                      ....+.++.++||++++||+|||+|+|++++++++.....  ...+++.+++++|+++++.+++++++||||+|||||++
T Consensus        41 ~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTla  120 (340)
T 3iyz_A           41 VAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVA  120 (340)
T ss_pred             hhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHH
Confidence            3456778889999999999999999999999887642111  12345678999999999999999999999999999999


Q ss_pred             HHHhccccccchhhhhhhhhhHHHHHHHHHHhhcccchhhhccCcceeecCCCCCCCcChhHHHHHHHHHHHHHHHHHHH
Q 045670          118 AALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVT  197 (319)
Q Consensus       118 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~~~~~E~~~TfiLv~~il~  197 (319)
                      +++.|+++|.+++.||++|++||++|+++++.++++....  ..+.+     .+.++.+..++|+.|+++||+|+++++.
T Consensus       121 l~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~--~lg~~-----~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila  193 (340)
T 3iyz_A          121 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG--GLGVT-----TVHGNLTAGHGLLVELIITFQLVFTIFA  193 (340)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC--ceeec-----cCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998765321  11211     1224678899999999999999999987


Q ss_pred             hhcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccchhhHHHHHHhCCCCCCcceehhhhHHHHHHHHH
Q 045670          198 IAFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVVYY  277 (319)
Q Consensus       198 ~~~d~~~~~~~~~~~~~~~i~~~ig~~v~~~~~~~~~~~~tG~~~NPAr~lg~al~~~~~~~~~~wvywvgP~~Gai~a~  277 (319)
                      +. |+++....+  ..++.||++    +.++...+  .++||++||||||||||++.+  +|+++||||+||++|+++|+
T Consensus       194 ~~-d~~~~~~~~--~~pl~IGl~----v~i~~~~g--~~~TG~amNPARdlGPal~~~--~w~~~WVywvgPiiGailaa  262 (340)
T 3iyz_A          194 SC-DDKRTDVTG--SVALAIGFS----VAIGHLFA--INYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIGAVLAG  262 (340)
T ss_pred             hh-cCccCCccc--chhhHHHHH----HHHHHHhc--cCCccccccHHHHHHHHHHcc--CCCcEeehhHHHHHHHHHHH
Confidence            64 444432222  223444444    43333332  468999999999999999987  79999999999999999999


Q ss_pred             HHHhhcCCC
Q 045670          278 GFAKTLPEE  286 (319)
Q Consensus       278 l~~~~~~~~  286 (319)
                      ++|+++..+
T Consensus       263 llY~~l~~p  271 (340)
T 3iyz_A          263 ALYEYVFCP  271 (340)
T ss_pred             HHHHHHhCC
Confidence            999988654
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-23
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-21
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-21
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 7e-18
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.3 bits (231), Expect = 6e-23
 Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 25/239 (10%)

Query: 44  EFFSPKMWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQK-------LLVPIAVFIIAF 96
           EF     WRA   E +A    +F    S +       S Q        + V +A  +   
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 97  LFLMVTVPLSGGHMSPVFTFIAALQGIVTLARAATYVLAQCLGSIVGFLIINSVMSHNAA 156
                   +SG H++P  T    L   +++ RA  Y++AQC+G+IV            + 
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATA-------ILSG 116

Query: 157 RRYSLGGCLIAGNGTSAGISAETALILEFTCTFVVLFVGVTIAFDKRRCKELGLVVVCAI 216
              SL    +  N  + G+++   L +E   T  ++   +    D+RR    G       
Sbjct: 117 ITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSG----- 170

Query: 217 VAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLHGGPLWKGHWVFWVGPFLACVV 275
               +AI   V++       Y G G+NPAR  G +++     ++ HW+FWVGPF+   +
Sbjct: 171 ---PLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHN--FQDHWIFWVGPFIGAAL 224
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.17
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.11
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.04
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 98.95
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.5e-47  Score=343.68  Aligned_cols=229  Identities=15%  Similarity=0.140  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCcchHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHhccccccch
Q 045670           50 MWRAAFTELVATAFLVFTLTTSIISCLDSHVSEQKLLVPIAVFIIAFLFLMVTVPLSGGHMSPVFTFIAALQGIVTLARA  129 (319)
Q Consensus        50 ~~r~~~aEfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~  129 (319)
                      +.|+|++||+|||+|+|+++++++.....+...+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|.+.
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~   81 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKV   81 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcHHHh
Confidence            46899999999999999999987766555555566789999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHhhcccchhhhccCcceee-----------cCCCCCCCcChhHHHHHHHHHHHHHHHHHHHh
Q 045670          130 ATYVLAQCLGSIVGFLIINSVMSHNAARRYSLGGCLI-----------AGNGTSAGISAETALILEFTCTFVVLFVGVTI  198 (319)
Q Consensus       130 ~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~s~~~~~~~E~~~TfiLv~~il~~  198 (319)
                      +.|+++|++|+++|+++.+.++++...+.........           ..+.+.++.+..++++.|+++||+|+++++..
T Consensus        82 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~il~~  161 (254)
T d1fx8a_          82 IPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILAL  161 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998876543321110000           01112357889999999999999999998877


Q ss_pred             hcccCcccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccchhhHHHHHHh-----------CCCCCCcceehhh
Q 045670          199 AFDKRRCKELGLVVVCAIVAGAMAIAVFVSITVTQKPGYAGVGLNPARCLGPALLH-----------GGPLWKGHWVFWV  267 (319)
Q Consensus       199 ~~d~~~~~~~~~~~~~~~i~~~ig~~v~~~~~~~~~~~~tG~~~NPAr~lg~al~~-----------~~~~~~~~wvywv  267 (319)
                      ..++++.....  ..++.+|+.+...+....      ++||++||||||||||++.           ++.+|+|+||||+
T Consensus       162 ~~~~~~~~~~~--~~~l~iG~~v~~~~~~~g------~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~v  233 (254)
T d1fx8a_         162 TDDGNGVPRGP--LAPLLIGLLIAVIGASMG------PLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF  233 (254)
T ss_dssp             HCTTSSSCCGG--GHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHH
T ss_pred             hcCccCCCccc--ccchHHHHHHHHHHhhcc------cccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhH
Confidence            66655433222  334455555554444332      4679999999999999985           3468999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCC
Q 045670          268 GPFLACVVYYGFAKTLPEE  286 (319)
Q Consensus       268 gP~~Gai~a~l~~~~~~~~  286 (319)
                      ||++|+++++++||++..+
T Consensus       234 gP~~Ga~ia~~~y~~l~~~  252 (254)
T d1fx8a_         234 GPIVGAIVGAFAYRKLIGR  252 (254)
T ss_dssp             TTHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988654
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure