Citrus Sinensis ID: 045675

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MTTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHcccHHHHHHcccccccHHHHcccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccEEEcccccccccccEEEEEEccEEEEEEEcccccEEEEEccccccEEEccccccccccccccEEEEEEEEEccccccEEEEEEEEEccccccEEEEEEcccccEEEEcccccccEEEccccEEEEcccEEEEEEccccccccEEEEEEEccccEEEEEcccccccccccEEEEcccEEEEEEcccccEEcccccEEEEEEEcccccEEEEEEEcccccccEEEEEEccEEEEEEccEEEEEEcccccEEEEEEEccccccEEEEEEEccEEcccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEcccEEEEccccccccccccccccccccccccccEEEEEEcccEEEEEEEEccccccEEEEccccccEEEEccccccccccccEEEEEEEEccccccccEEEEEEEEcccccccEEEEEEcccccEEEEEccccccccccccccEEEEEEEEEEEEEcccccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccccccccEEEEEEEcccccHHEEEEEcccccccEEEEEEccEEEEEEccEEEEEEccccEEEEEEEEcccccccEEEEEcccHEEccccccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mttndtttvssvPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLkqhqvelppleglstfpkivgscngllcLDVSSAFGMAFVLwnpatnefkglptpsltesrLKTFWMVSLgfgfnqdtnDYVLVRIVNFQARYDAIAEVYStstgkwkevaagtgscviyggQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWrtampelptdcYVKALSYDQSLALAvypglgfrsrlSNRFELWVmnegkgwtrTFNTAFEriawpvgsfrdskIIMKSVDqfflfnpktkrnfilpidsgmgysyKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Flexible Loop (DISEMBL)
mttndtttvssvplvIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVyststgkwkeVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Low Complexity Region (SEG)
MTTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Disordered region (IsUnstruct)
*********SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVN*********************
Disordered Region (DISOPRED)
*************LVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIV************************
Disordered Region (DISEMBL)
*********SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Disordered Region (DISPRO)
*********SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGEND*KEVEAQ**G*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQIEGMVHDGSN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q8GXC7	427	F-box/kelch-repeat protei	yes	no	0.869	0.777	0.274	3e-20
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.662	0.612	0.230	3e-15
Q9SSQ2	423	F-box protein At1g52490 O	no	no	0.740	0.669	0.248	9e-14
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.531	0.557	0.266	2e-13
Q9LUU3	386	Putative F-box/kelch-repe	no	no	0.591	0.585	0.239	6e-13
A8MS20	401	F-box protein At2g43440 O	no	no	0.667	0.635	0.237	3e-12
Q9LU24	360	Putative F-box protein At	no	no	0.557	0.591	0.231	6e-12
Q9FHP3	392	F-box protein At5g65850 O	no	no	0.845	0.823	0.250	8e-12
Q0WRU9	405	F-box/kelch-repeat protei	no	no	0.662	0.624	0.253	9e-12
Q9C800	441	Putative F-box protein At	no	no	0.5	0.433	0.264	3e-11

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 176/404 (43%), Gaps = 72/404 (17%)

Query: 12  VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHS-------LIV 64
           +P  IIT+ILL+LP KSI RF+CVSK +  L     F   HL+  +RN S       LIV
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 65  R----------------------YYNHAFGNDSGLM--LLRSDLKQH-------QVELPP 93
                                   +N+   +D  +   ++R+ +  H        ++L  
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNA 155

Query: 94  LEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPT---PSLTESRLKTFW 150
                 + +IVGS NGL+C  +S   G  F L+NP T + K LP    P   E     F 
Sbjct: 156 KSYRRNWVEIVGSSNGLVC--ISPGEGAVF-LYNPTTGDSKRLPENFRPKSVEYERDNFQ 212

Query: 151 MVSLGFGFNQDTNDYVLVRIVNFQARYDAI--AEVYSTSTGKWKEVAAGTGSCVIYGGQD 208
             + GFGF+  T+DY LV++V   A  + I  A VYS     W+ +              
Sbjct: 213 --TYGFGFDGLTDDYKLVKLV---ATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTS 267

Query: 209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALA 268
            V   G +HW+        N++ VV++D+  E F    +P+   DC  +  ++       
Sbjct: 268 GVHFNGAIHWVF--TESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNF------- 318

Query: 269 VYPGLGFRSRLSN-----RFELWVMN---EGKGWTRTFNTAFERIAWPVGSFRDSKIIMK 320
           V   L  R  + N       ++WVM+   E K W+R       R   P+ S ++ + ++ 
Sbjct: 319 VVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLL 378

Query: 321 SVD-QFFLFNPKTKRNFILPIDSGMGYS--YKVFTYVDSIVAVN 361
            +D    L+N +T  +  L I  G+  S  ++  TYV+S+++ N
Sbjct: 379 ELDGDLVLYNFETNASSNLGI-CGVKLSDGFEANTYVESLISPN 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 138/338 (40%), Gaps = 85/338 (25%)

Query: 9   VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYN 68
           ++++P+ I+ DI L+LP K++VR + +SK    LI   +F+ +HL+  ++          
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQT--------- 51

Query: 69  HAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFP---------KIVGSCNGLLCLDVSSAF 119
                D  ++LLR  L+ + V+L  L+ +S            ++ GS NGL+ L  S   
Sbjct: 52  ----GDHLMILLRGALRLYSVDLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPT- 106

Query: 120 GMAFVLWNPATNEFKGLPTPSL-----TESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ 174
                ++NP+T +   LP  S+     + +R   F+    G G++  ++DY +VR+V F+
Sbjct: 107 --DLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFY----GLGYDSVSDDYKVVRMVQFK 160

Query: 175 --------ARYDAIAEVYSTSTGKWKEVAAGTGSC---------VIYGGQDAVAVKGVLH 217
                     +    +V+S     WK + +   S          ++Y     V     LH
Sbjct: 161 IDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLH 220

Query: 218 WIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTD--------------CYVKALSYDQ 263
           W+      L+    +V +D+ LE F     PE   +              C     +YDQ
Sbjct: 221 WVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQ 280

Query: 264 SLALAVYPGLGFRSRLSNRFELWVMNE---GKGWTRTF 298
           S                   ++W+M E      WT+ F
Sbjct: 281 SYV-----------------DVWMMKEYNVRDSWTKVF 301

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSQ2|FB55_ARATH F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 134/318 (42%), Gaps = 35/318 (11%)

Query: 12  VPLVIITDILLQLPIKSIVRFKCVSKSWLLLI-KSSEFVTAHLNCSIRN--HSLIVRYYN 68
           +PL +I +IL +LP KS++RF+CVSK W  +I K  +FV + +  S+R   H L V  ++
Sbjct: 55  LPLDLIVEILKKLPTKSLMRFRCVSKPWSFIISKRRDFVESIMARSLRQPPHKLPVFIFH 114

Query: 69  HAFGNDSGLMLLRSDLKQHQVE-----LPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAF 123
                D G     S       +     +P     + F        G +C   SS + +  
Sbjct: 115 QC---DPGTFFTVSSTFSQSTKPKVSIMPGRNHYNAFR--YQYVRGFICCS-SSVYDLV- 167

Query: 124 VLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEV 183
            ++NP T +   LP P +    L         FG++   N+Y ++ +VN          V
Sbjct: 168 TIYNPTTRQ--CLPLPKIESMVLSPKRHKHCYFGYDHVMNEYKVLAMVNDSQELTQTFHV 225

Query: 184 YS--TSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVN--EKFVVSYDMNL 239
           ++      +W+++       +I   +  V + G ++++A       N  E F++S+D+  
Sbjct: 226 FTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMMSFDVKS 285

Query: 240 ELFWRTAMPEL--PTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN--EGKGWT 295
           E F+    PE      C  + L   Q         LG  S   N   +W+M   E + W+
Sbjct: 286 ERFYHVRTPETLWSPKCTERGLFNHQG-------KLGCISSNENNISMWIMENAEKQEWS 338

Query: 296 RTFNTAFERIAWPVGSFR 313
              N  F  + +P G FR
Sbjct: 339 ---NITFGLLEYPGGDFR 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 30/233 (12%)

Query: 2   TTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAH---LNCSIR 58
           TT +  +  ++PL ++ +ILL+LP+KS+ RFKCV  SW  LI  + F   H   L  S  
Sbjct: 4   TTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKA 63

Query: 59  NHSL--------IVRYY-----NHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVG 105
             S           RY+      H+  N S + +      +H  EL   +    + ++VG
Sbjct: 64  TTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYV-----SEHDGELLGRD----YYQVVG 114

Query: 106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDY 165
           +C+GL+C  V   +  +  LWNP     + L +  L  S  +   +V+ GFG+++  +DY
Sbjct: 115 TCHGLVCFHVD--YDKSLYLWNPTIKLQQRLSSSDLETSDDEC--VVTYGFGYDESEDDY 170

Query: 166 VLVRIVNFQARYDAIAEVYSTSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLH 217
            +V ++  + +     ++YST    W+   +  +G  V    +  + + G L+
Sbjct: 171 KVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLN 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUU3|FBK58_ARATH Putative F-box/kelch-repeat protein At3g17280 OS=Arabidopsis thaliana GN=At3g17280 PE=4 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 7   TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRY 66
           TT+S +P  ++ +IL +LP KSI + K   K W  L K  +FV   L  + R    ++ +
Sbjct: 2   TTISDLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNH 61

Query: 67  YNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPK-------IVGSCNGLLCLDVSSAF 119
             ++   D     +    K + V +    G  T P+        +  CNGL    + +  
Sbjct: 62  EVNSISVD-----IHGIPKGYSVSM-DFTGTLTIPEGSDLEIFRIHHCNGLF---LCATM 112

Query: 120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDT--NDYVLVRIVNFQARY 177
               V+WNP T +   +    +  +R  +  + +LG G ++ +  + Y ++R  +   + 
Sbjct: 113 NCRLVVWNPCTGQITWI----IPRTRYDSDDIYALGCGDDKSSSLHSYKILRCCDDNQK- 167

Query: 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDM 237
             ++E+Y  S+  W+ +   T +C I    + VA+K   +W A+        KF++ +D 
Sbjct: 168 KPVSEIYDFSSSSWRVLDGVTANCFIEC--NGVALKESAYWYASDKRETPKGKFILRFDF 225

Query: 238 NLELFWRTAMP 248
             E F R  +P
Sbjct: 226 ATERFARLCLP 236

Arabidopsis thaliana (taxid: 3702)

>sp|A8MS20|FB350_ARATH F-box protein At2g43440 OS=Arabidopsis thaliana GN=At2g43440 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 56/311 (18%)

Query: 5   DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIV 64
           +T ++  VP  ++ DI L+LP+KSI++FK VS+ W  +++S  FV    N   ++H  I+
Sbjct: 7   NTNSIYIVP-ELLEDIFLRLPLKSILKFKTVSRQWRSILESKLFVERRGNLQ-KHHRKIL 64

Query: 65  RYYN------------HAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLC 112
             YN              F  D  ++ L  D  Q  +                +C+GLLC
Sbjct: 65  AAYNCNYFMRPSIFPESRFEGDEEIVYLHCDAAQPSM----------------TCDGLLC 108

Query: 113 LDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVN 172
           +     F +     NP+  + +  P         +  W+  LGFG +  T  Y +VR+  
Sbjct: 109 ITEPGWFNVL----NPSAGQLRRFPPGPGPVKGPQENWL--LGFGRDNVTGRYKIVRMCF 162

Query: 173 FQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFV 232
                  I ++    TG W ++ +   +  +  G  +V V G ++W+    G +     +
Sbjct: 163 HDCYEFGILDI---ETGVWSKLRSPPHN--MLPGSKSVCVNGSIYWLQISAGYI-----I 212

Query: 233 VSYDMNLELFWRTAMPELPTDCYVKA---LSYDQSLALAVYPGLGFRSRLSNRFELWVMN 289
           ++ D++ E +    +  LP     +    ++ +  LA+A+   +G    L    E+W M+
Sbjct: 213 LAMDLHEESY--HGVHHLPATWVTQETQLVNLEDRLAMAMTTNVGPEWIL----EIWSMD 266

Query: 290 -EGKGWTRTFN 299
            EGKGW++ ++
Sbjct: 267 IEGKGWSKGYS 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 29/242 (11%)

Query: 12  VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAF 71
           +P  +  +IL++L +K + RF+CV K+W  LI    F   + + S    +  V +Y    
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMS---PAKFVSFY---- 57

Query: 72  GNDSGLMLLRSDLKQ----HQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWN 127
             D    +L  + K     ++++ P  + +      V  C+G LC+ + +      ++WN
Sbjct: 58  --DKNFYMLDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNH---TLMVWN 112

Query: 128 PATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD-AIAEVYST 186
           P + +FK +P P + +          LGFG++   +DY   ++V F  R D + A V+  
Sbjct: 113 PFSKQFKIVPNPGIYQDS------NILGFGYDPVHDDY---KVVTFIDRLDVSTAHVFEF 163

Query: 187 STGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA 246
            TG W E    +     Y  +    +   L+WIA        ++F++ ++++   + +  
Sbjct: 164 RTGSWGESLRISYPDWHYRDRRGTFLDQYLYWIAYRSSA---DRFILCFNLSTHEYRKLP 220

Query: 247 MP 248
           +P
Sbjct: 221 LP 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHP3|FB300_ARATH F-box protein At5g65850 OS=Arabidopsis thaliana GN=At5g65850 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 152/395 (38%), Gaps = 72/395 (18%)

Query: 4   NDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLI 63
           N T     +P+ II +ILL+LP KSI   +CVSK W+ +I   +F    L  S+    L+
Sbjct: 27  NKTEKSVQIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRPQLL 86

Query: 64  VRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFP---KIVGSCNGLLCLDVSSAFG 120
                     D  L    S   Q+  E      L  F    KI    NGL+C        
Sbjct: 87  F-----CCKKDGNLFFFSSPQLQNPYENSSAISLKNFSLCYKISRPVNGLICFKRKEMNE 141

Query: 121 MAFVLWNPATNEFKGLPTP---SLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY 177
              V+ NP+T     LP P   S+  SR   +  +   F              V    + 
Sbjct: 142 TVTVICNPSTGHTLSLPKPMKTSIGPSRFFVYEPIQKQFK-------------VLLSYKS 188

Query: 178 DAIAEVYSTSTGK--WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSY 235
           D   +V +  TG+  W+ +       +   G   + + GVL++ A  I +   +  +V +
Sbjct: 189 DE-HQVLTLGTGELSWRIIECSMPHIL---GMSEICINGVLYYPA--INLSSGDYIIVCF 242

Query: 236 DMNLELF-WRTAMPELPTDCYVKA------LSYDQSLALAVYPGLGFRSRLSNRFELWVM 288
           D+  E F + T M E     ++KA      ++Y+  LA  V     F    S   ELWV+
Sbjct: 243 DVRSEKFRFITVMEE-----FIKAAHDGTLINYNGKLASLVSERYCFVDGRSKSIELWVL 297

Query: 289 N--EGKGWTR--------------TFNTAFERIAWPVGSFRDSKIIMKSVDQ-----FFL 327
              E K W++              T N  F      VG  R ++I++    Q      + 
Sbjct: 298 QDAEKKEWSKHTYVLPAWWQHRIGTLNLRF------VGVTRTNEIMLSPCYQTVPFDVYY 351

Query: 328 FNPKTKRNFILPIDSGMGYS-YKVFTYVDSIVAVN 361
           FN + K    + I     +  + VFTY+D +  V 
Sbjct: 352 FNIERKTMMSVAIQGMEAFQGHLVFTYLDHVENVK 386

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WRU9|FBK44_ARATH F-box/kelch-repeat protein At2g43445 OS=Arabidopsis thaliana GN=At2g43445 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 140/288 (48%), Gaps = 35/288 (12%)

Query: 16  IITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDS 75
           ++ +I L LP+KSI++FK VSK W  +++S+ FV        +NH  I+  YN  +    
Sbjct: 17  LLEEIFLGLPLKSILKFKTVSKQWRSILESNLFVERRRTLQ-KNHPKILAAYNCDYCTRP 75

Query: 76  GLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKG 135
           G+ L +S  +  + E+  L   +T P +  +C+GL+C+     F +     N +T + + 
Sbjct: 76  GI-LPKSQFEGDE-EIVYLHTDATQPSM--TCDGLVCITEPGWFNVL----NVSTGQLRR 127

Query: 136 -LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEV 194
            LP P   +   +  W+  LGFG ++ T  Y +VR+         I ++ S   G+W ++
Sbjct: 128 FLPGP---DPGPQANWL--LGFGRDKVTGKYKIVRMCFHDCYEFGILDIES---GEWSKL 179

Query: 195 AAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDC 254
            +     ++  G  +V V G ++W+   +  +     +++ D++ E F    +  LP   
Sbjct: 180 MSPPH--IMRVGSKSVCVNGSIYWLQISVSYI-----ILALDLHQETF--NGVYHLPATW 230

Query: 255 Y---VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN-EGKGWTRTF 298
                + ++ +  LA+A+   +G    L    E+W M+ E KGW++ +
Sbjct: 231 VTQDTQLVNLEDRLAMAMTTKVGPEWIL----EIWSMDIEEKGWSKRY 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 43/234 (18%)

Query: 2   TTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHS 61
           + ++TT    +P V++ +IL +LP+K +VR K +SK W  LI+S      HL    + + 
Sbjct: 87  SCSETTLAVELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYG 146

Query: 62  L------IVRYYNHA-----FGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGL 110
           L      + R  + +     F   SG+  + SD                  ++ GSCNGL
Sbjct: 147 LKEIKITVERSTSKSICIKFFSRRSGMNAINSDSDD-------------LLRVPGSCNGL 193

Query: 111 LCL-DVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVR 169
           +C+ ++ S +     L NP T   + L  P  T+        +S+GFG +  T  Y ++ 
Sbjct: 194 VCVYELDSVY---IYLLNPMTGVTRTLTPPRGTK--------LSVGFGIDVVTGTYKVMV 242

Query: 170 IVNFQARYDAIAEVYSTSTGKWKEVAAGTG----SCVIYGGQDAVAVKGVLHWI 219
           +  F  R   +  V+   T KW++     G    SC+    ++ V V G L W+
Sbjct: 243 LYGFD-RVGTV--VFDLDTNKWRQRYKTAGPMPLSCIPTPERNPVFVNGSLFWL 293

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
224118272	387	predicted protein [Populus trichocarpa]	0.937	0.925	0.381	2e-64
224135169	392	predicted protein [Populus trichocarpa]	0.942	0.918	0.372	8e-63
224132792	379	predicted protein [Populus trichocarpa]	0.856	0.862	0.311	2e-35
296090345	423	unnamed protein product [Vitis vinifera]	0.884	0.799	0.314	3e-34
224119696	367	predicted protein [Populus trichocarpa]	0.850	0.885	0.295	4e-28
316996547	393	hypothetical protein [Pyrus pyrifolia]	0.887	0.862	0.295	8e-28
147785389	485	hypothetical protein VITISV_041940 [Viti	0.709	0.558	0.314	4e-26
224120796	409	predicted protein [Populus trichocarpa]	0.908	0.848	0.288	1e-25
316996536	393	hypothetical protein [Pyrus pyrifolia]	0.890	0.865	0.290	1e-25
125995264	393	MdSFBB3-beta [Malus x domestica]	0.793	0.770	0.291	1e-25

>gi|224118272|ref|XP_002317776.1| predicted protein [Populus trichocarpa] gi|222858449|gb|EEE95996.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 219/383 (57%), Gaps = 25/383 (6%)

Query: 11  SVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHA 70
           ++P   +TDIL +LPIKS+ RF+ VSK +  LI S  F++AHL  S R+ S   R++N+ 
Sbjct: 6   TLPQETLTDILSRLPIKSLTRFQSVSKPFSALINSPAFISAHLRRSSRHSSFFFRHFNNP 65

Query: 71  FGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPAT 130
            G++    L  + +    VE+P L  L  FPKIVGSCNGL+CLD+SS +   FVLWN A 
Sbjct: 66  SGSNFSFFLNNNLISD--VEVPLLGCLIRFPKIVGSCNGLVCLDISSCYARGFVLWNIAR 123

Query: 131 NEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD----AIAEVYST 186
            ++  LP+P +++SR + FWMVS GFGF+   NDY +VRIV+F    D     +AEV+S 
Sbjct: 124 KQYSCLPSPRISDSR-RPFWMVSTGFGFDLKKNDYKVVRIVSFSCEKDESPVVMAEVFSW 182

Query: 187 STGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA 246
            T  W+ + A  G+C I+ GQ+ V V G LHW+ N  G    +KF+VS+D++ E F +  
Sbjct: 183 RTFCWRVIEASIGACAIHEGQNGVVVNGGLHWLGNSAGKSGIQKFIVSFDLDTEEFRKIP 242

Query: 247 MPELPTDCYVKALSYDQSLALAVYPGLGF-------RSRLSNRFELWVMNE-----GKGW 294
           +P+ P    VK + +  SLALA YP           R  +++  E  V +E     GK W
Sbjct: 243 IPDFPAGICVKIMGFKGSLALAFYPAKEVDVHSRHGRPGVADWIEFCVWDECDGADGKCW 302

Query: 295 TRTFNTAFERIAWPVGSFRDSKIIMKSV-----DQFFLFNPKTKRNFILPIDSGMGYSYK 349
           T+  +     + +PVG   ++ +I+K +      QF LF+P  +    + I     YS  
Sbjct: 303 TKLNSIQLTTVGYPVGVANETGLIIKKLMEGQGAQFILFDPSNQYYRGMHI-CDASYSCD 361

Query: 350 VFTYVDSIVAVNGENDEKEVEAQ 372
           V +YV+S+V V+G   ++ +E +
Sbjct: 362 VHSYVESLVPVSGGGHDQVIEEE 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135169|ref|XP_002322000.1| predicted protein [Populus trichocarpa] gi|222868996|gb|EEF06127.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 222/381 (58%), Gaps = 21/381 (5%)

Query: 10  SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNH 69
           +++P   +TDIL +LPIKS+ RF+ VSK +  LI S +F++AHL+ S R+ +  +R++++
Sbjct: 12  TTLPQETLTDILSRLPIKSLTRFESVSKPFSALINSPDFISAHLHRSSRHFTFFIRHFHN 71

Query: 70  AFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPA 129
             G++    L  ++ +   VE+P L  L  FPKIVGS NGL+CLD+SS +   FVLWN A
Sbjct: 72  PSGSNFSFSL--TNNQPIDVEIPLLGSLIRFPKIVGSSNGLVCLDISSCYARGFVLWNIA 129

Query: 130 TNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD----AIAEVYS 185
             ++  LP+P +++SR   FWMVS GFGF+++ NDY +VRIV F          + EV+S
Sbjct: 130 RKQYSCLPSPIISDSR-GPFWMVSTGFGFDREKNDYKVVRIVGFACEKGESPVVMVEVFS 188

Query: 186 TSTGKWKEV-AAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVN-EKFVVSYDMNLELFW 243
             TG WK +     G+CVI+ G + V + G LHW+ N  G     +KF++S+D+N E F 
Sbjct: 189 WRTGCWKVIDGRAIGACVIHEGHNGVVINGGLHWLGNSAGKSGGIQKFILSFDLNTEEFR 248

Query: 244 RTAMPELPTDCYVKALSYDQSLALAVYPGLGF--RSRLSNRFELWVMN-----EGKGWTR 296
           +   PE      VK + +   LALA YP  G   R   ++R E+ V +     +GK WT+
Sbjct: 249 KIPTPEFSAGVCVKIMGFKGLLALAYYPSKGLVGRPAATDRVEICVWDDYGGADGKYWTK 308

Query: 297 TFNTAFERIAWPVGSFRDSKIIMKSVD----QFFLFNPKTKRNFILPIDSGMGYSYKVFT 352
             +     + +PVG   ++ +IM+ +D    QFFL +P  +    L I     YS  + +
Sbjct: 309 LNSLQLNALGYPVGVTNETGLIMRKLDGQFTQFFLCDPSNQNYRRLHICEAT-YSCDIHS 367

Query: 353 YVDSIVAVNGENDEKEVEAQI 373
           YV+S+V V+  +D + +E ++
Sbjct: 368 YVESLVPVSAGHDHRVIEEEV 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132792|ref|XP_002321411.1| predicted protein [Populus trichocarpa] gi|222868407|gb|EEF05538.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 196/382 (51%), Gaps = 55/382 (14%)

Query: 16  IITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDS 75
           ++ DIL +LP+K+++RFK VSK  L +I +  F+T+HL+ S +N SL+  + +  F    
Sbjct: 13  MVIDILSRLPVKTLLRFKSVSKPMLSVITNPRFITSHLHQSTKNSSLVFHFSHDEF--PI 70

Query: 76  GLMLLRSDLKQHQVELPP-LEGLSTFP--KIVGSCNGLLCLDVSSAFGM-AFVLWNPATN 131
            ++          V +PP ++  S  P  +I GSC GLL +++     M  +  WNPAT 
Sbjct: 71  SMLYYTEPTTLRVVHIPPSMKDHSLKPRIRIKGSCGGLLFMEIYFGCCMFHYGFWNPATR 130

Query: 132 EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF-----------QARYDAI 180
           +FK +  P       +   +++ GFG+    NDY LVRI  F           + R D++
Sbjct: 131 QFKKVTGPQ------QCINLLAEGFGYGSKINDYKLVRIGYFLHPRTLITRYDRRRVDSV 184

Query: 181 --AEVYSTSTGKWKEVAAGTGSCVIYGGQ--DAVAVKGVLHWIANGIGVLVNEKFVVSYD 236
             A V+S  T  W+ V  G     + GG+  DAVAVKG L+W  +G+  L NE  V+++D
Sbjct: 185 VRALVFSWKTDSWRTVEDG----ALLGGRFSDAVAVKGDLYWKVSGVENLANEG-VLAFD 239

Query: 237 MNLELFWRTAMPELPTDCYVKALS---YDQSLALAVYPGLGFRSRLSNRFELWVMNEG-- 291
            + ++F R  +P L       +++   +  SL L V+         ++ F+LWV+NE   
Sbjct: 240 SDTDMFRRIELPGLNQSSPNYSMTITGFKDSLGLFVF----LEGSSNSSFDLWVLNESRM 295

Query: 292 ----KGWTRTFNTA-FERIAWPVGSFRDSKIIMKSV---DQFFLFNPKTKRNFILPIDSG 343
               K W++        RI WP+ ++R  KII+KS    D FFL++P ++    +PI S 
Sbjct: 296 GGNIKSWSKLLTVGPMSRIGWPISAWR-GKIILKSPNEKDGFFLYDPISQEVIDVPISSS 354

Query: 344 MGYSYKVFTYVDSIVAVNGEND 365
             Y      Y +++ +V+G ++
Sbjct: 355 GAYD-----YAETLASVDGTSN 371

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 179/362 (49%), Gaps = 24/362 (6%)

Query: 17  ITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDSG 76
           + DI L+LP+KSIVRF+CV KSW  L    +F++ HL  +  N +  +  + H   ++  
Sbjct: 25  LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRL-LFKHLSSSEQE 83

Query: 77  LMLLRSDLKQHQVEL--PPLEGLSTFPKIVGSCNGLLCLDVS----SAFGMAFVLWNPAT 130
           +  LRS++   +V     P+   + + +IVGS NGL+CL  S    S   +   LWNPA 
Sbjct: 84  IYSLRSNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAI 143

Query: 131 NEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK 190
            EF+ LP   +  +      +V LGF F+   NDY +VRIV F     + A+VYS  TG 
Sbjct: 144 REFQTLPKYHIN-NFTSPLMVVGLGFAFHPVINDYKVVRIVYFMRNKTSEADVYSLRTGS 202

Query: 191 WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVN-EKFVVSYDMNLELFWRTAMPE 249
           W++V A    C I+       + G LHW+A     + N +  ++S+DM  ++F    +P+
Sbjct: 203 WRKVDANI-CCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKEIMLPD 261

Query: 250 LPTDCYVKALSYDQSLALAVYPGLGFRSRLSNR-FELWVMNE---GKGWTRTFNTAFE-R 304
              D  ++    D   +L+V   L + +  SN   ++WVM E    K WT+ F    E  
Sbjct: 262 FGYDELIRKCLADYKGSLSV---LFYDAYHSNENCDVWVMEEYGVAKSWTKHFTIRHEIE 318

Query: 305 IAWPVGSFRDSKIIM--KSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNG 362
           I  P   F + + I+  K    F  +NP   R      D G+    ++  Y++S+V+  G
Sbjct: 319 IIIPFEFFDNGEAILQKKKSGGFISWNPDGIRF----RDLGVSGPARLVEYMESLVSPRG 374

Query: 363 EN 364
            N
Sbjct: 375 GN 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 172/366 (46%), Gaps = 41/366 (11%)

Query: 12  VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAF 71
           +P  +I +IL  LP+K++++FKCV KSW  +I SS F++ HLN    NH   ++   H  
Sbjct: 9   LPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLN----NHYNNIK-SGHLL 63

Query: 72  GNDSGLMLLR-------SDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFV 124
            +     LL        +DL  HQ   PP+ G     ++ G CNG+  +D   + G    
Sbjct: 64  AHFVCPQLLELFQDESLTDLS-HQGLDPPIRG-----RLCGPCNGIFYVDSEDSSGSG-- 115

Query: 125 LWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY------- 177
           LWNPAT EFK LP     +S L  ++  S GFGF+  TNDY +V I     R        
Sbjct: 116 LWNPATKEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFP 175

Query: 178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDM 237
            ++  VY+  T  W+   +      + G      V GV +W A G GV +N   ++S++M
Sbjct: 176 SSLVIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVDGVYYWQA-GHGVHMN--VILSFNM 232

Query: 238 NLELFWRTAMPELPTDCY-VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTR 296
             + F     P+     Y  + + Y  S+A +          +    ++WV+NEG  W R
Sbjct: 233 ATDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTV------HNVEKFLDIWVLNEG-CWIR 285

Query: 297 TFNT-AFERIAWPVGSFRDSKIIMKSV-DQFFLFNPKTKRNFILPIDSGMGYSYKVFTYV 354
            F +     +  PV  +++  +I+ S  DQ  L++   +    L    G G  Y++  Y 
Sbjct: 286 QFKSRPLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRF-KGTGVCYEILVYR 344

Query: 355 DSIVAV 360
           +S+V++
Sbjct: 345 ESLVSI 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316996547|dbj|BAJ52237.1| hypothetical protein [Pyrus pyrifolia]

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 118/400 (29%), Positives = 187/400 (46%), Gaps = 61/400 (15%)

Query: 10  SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNH------SLI 63
           +  P   + +IL +LP KS++RFKC+ KSW  LI S  FV  HLN S  N        L+
Sbjct: 7   TETPEDKMVEILSRLPPKSLMRFKCIRKSWFTLINSPSFVAKHLNNSTDNKLSSSTCILL 66

Query: 64  VRYYNHAFGNDS-------GLMLLRSDLKQHQVE-------LP-PLEGLSTFPKIVGSCN 108
            R   H F + S         + L  D  +H +        +P PLE    F  I G CN
Sbjct: 67  NRSQAHIFPDQSWKQEVFWSTINLSIDSDEHNLHYDVEDLIIPFPLED-HDFVLIFGYCN 125

Query: 109 GLLCLDVSSAFGMAFVLWNPATNEFKGLP------TPSLTESRLKTFWMVSLGFGFNQDT 162
           G+LC+DV    G   +L NPAT +F+ LP       P   +  L+T +  +LGFG++ ++
Sbjct: 126 GILCVDV----GKNVLLCNPATRQFRQLPDSCLLLPPPKGKFELETTFQ-ALGFGYDCNS 180

Query: 163 NDYVLVRIVN----------FQAR--YDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAV 210
            +Y +VRI+           F  R      AEVY+T+   WKE+     S   Y    +V
Sbjct: 181 KEYKVVRIIENCEYSDDEQTFHHRIALPHTAEVYTTTANSWKEIKIDISS-QTYHCSCSV 239

Query: 211 AVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVY 270
            +KG  +W A+      NE++++S+ +  E F    +P      +     + ++ +LA +
Sbjct: 240 YLKGFCYWFASD-----NEEYILSFYLGDETFHIIQLPSRRESGFTFDYIFLRNESLASF 294

Query: 271 PGLGFRSRLSNRFELWVMNEGKG----WTRTFNTA-FERIAWPVGSFRDSKIIMKSVDQF 325
                 S  S  FE+WVM++  G    WT+      F+ I +P+  ++  +++M + D  
Sbjct: 295 CSPYSPSEDSKLFEIWVMDDNDGVKSSWTKLLTVGPFKGIEYPLTLWKCDELLMLASDGR 354

Query: 326 FLFNPKTKRNF----ILPIDSGMGYSYKVFTYVDSIVAVN 361
            +    +  NF    ILPI + +   ++   YV SIV +N
Sbjct: 355 AISYNSSTGNFKYLHILPILNKV-VDFEGLIYVKSIVPLN 393

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785389|emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera]

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 147/302 (48%), Gaps = 31/302 (10%)

Query: 17  ITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSI--RNHSLIVRYYNHAFGND 74
           + D+LL+LP+KSI+RFKCV +SW  L    +F+  HL  +I   N  ++++Y +    ++
Sbjct: 88  LVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMHLRRAITHNNCCMLLKYLS---SSE 144

Query: 75  SGLMLLRSD-----LKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFG----MAFVL 125
             +  LR D      ++ QV   P+   + +  IVGS NGL+CL  S+  G    +   L
Sbjct: 145 EEVYSLRCDKDFAEFRRLQV---PVPSKTDYYHIVGSSNGLICLTESNNKGSYVTVDTFL 201

Query: 126 WNPA-TNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY 184
           WNP+ T ++K LP   +       F +V LGF F+   +DY +VRIV F         VY
Sbjct: 202 WNPSVTAQWKPLPKYLINNMMTSPFMVVGLGFAFHPQIDDYKVVRIVYFLKSKTYEVHVY 261

Query: 185 STSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIA--NGIGVLVNEKFVVSYDMNLELF 242
           S     WK + A    C I+       V G LHW+A     G   ++  ++S+DM  +  
Sbjct: 262 SLKQDAWKNIDAKV-HCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDLILSFDMVEDNL 320

Query: 243 WRTAMPELPTD--CYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNE---GKGWTR 296
               +PE   D     K L+ Y   L++ VY       R ++  ++WVM+E      WT+
Sbjct: 321 REMILPEFGYDESSTQKCLADYKGLLSVLVYNA----HRCNDNCDIWVMDEYGVASSWTK 376

Query: 297 TF 298
            F
Sbjct: 377 RF 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120796|ref|XP_002318419.1| predicted protein [Populus trichocarpa] gi|222859092|gb|EEE96639.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 187/419 (44%), Gaps = 72/419 (17%)

Query: 8   TVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLN-CSIRNHSLIVRY 66
           +VS +P  IIT+IL +LP+KS++RFK VSK W  LI S EF+ AHL+  S +  S+++R 
Sbjct: 10  SVSILPEEIITEILTRLPVKSLLRFKLVSKDWYSLITSPEFIPAHLHKYSTQKSSILLRG 69

Query: 67  YNHAFGNDSGLMLLRSDLKQ-HQVELP-PLEGLSTF-------PKI--------VGSCNG 109
           +     + +   L R D    H + +P  L    TF       P+I        +GS  G
Sbjct: 70  FRWPEHSSTLSFLHRKDTTTFHSLHIPQSLMYNHTFMRNYFLNPQISPNLSFILIGSSGG 129

Query: 110 LLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVR 169
           LLC+ +    G+ +VLWNPAT +FK +  P       + F ++  GFG N   NDY+LV+
Sbjct: 130 LLCIKLCDYHGIDYVLWNPATRKFKYVKHPQ------QDFQLLMDGFGHNGKMNDYMLVK 183

Query: 170 I--VNFQARYDAI----------------AEVYSTSTGKWKEVAAGTGSCVIYG------ 205
           I  +     +DA+                A VYS  T  W+ V      C I        
Sbjct: 184 IGRLFHSPNFDAVDDDQLYEKEERDFVLRALVYSWRTDSWRLVY----DCRILADDFCSR 239

Query: 206 GQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL----SY 261
           GQ AV++KG  +W  +G+        ++++D    +F     P       V+        
Sbjct: 240 GQ-AVSLKGEFYWHLDGL-----RDIILAFDTAKHVFRWINFPPWNQSTLVEVRLVSGGI 293

Query: 262 DQSLALAVYPGLGFRSRLSNRFELWVMNE-GKG------WTRTFNTAFERIAWPVGSFRD 314
             SLA  V+P   +    S   ++WV++E G G      WT+  +  F      V ++ D
Sbjct: 294 KDSLACCVFP---YDGSTSITMDIWVVDESGSGVGNEESWTKFLSIPFLGTLHQVFTWGD 350

Query: 315 SKIIMKSVDQFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVAVNGENDEKEVEAQI 373
             I+    D   L         I    +    SY +  YV+S+V+V+G N+ +   A +
Sbjct: 351 KVIVNGKRDGHILIYDPISHEIIYDFLNPYFSSYHLDGYVESLVSVDGPNNLEAEHAPV 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316996536|dbj|BAJ52227.1| hypothetical protein [Pyrus pyrifolia]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 187/399 (46%), Gaps = 59/399 (14%)

Query: 10  SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNH------SLI 63
           + +P   + +IL +LP KS++RFKC+ KSW  LI +  FV  HLN S+ N         +
Sbjct: 7   NEIPEDKVVEILSRLPPKSLMRFKCMRKSWCTLINNPSFVAKHLNNSMDNKLSSSTCIFL 66

Query: 64  VRYYNHAFGNDS-------GLMLLRSDLKQHQVE-------LP-PLEGLSTFPKIVGSCN 108
            R   H F + S        ++ L  D  +H +        +P PLE    F  I G CN
Sbjct: 67  NRSQAHIFPDQSWKQEVFWSMIKLSIDSDEHNLHYDVEDLNIPFPLED-HDFVLIFGYCN 125

Query: 109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPT------PSLTESRLKTFWMVSLGFGFNQDT 162
           G+LC +     G   +L NPAT EFK LP       P   +  L+T +  +LGFG++ + 
Sbjct: 126 GILCAEA----GKMVLLCNPATREFKQLPVSCLLLPPPKGKFELETTFQ-ALGFGYDCNA 180

Query: 163 NDYVLVRIV-------NFQARYDAI-----AEVYSTSTGKWKEVAAGTGSCVIYGGQDAV 210
            DY +VRI+       + Q  Y  I     AEVY+TS+  WKE+     S  IY    +V
Sbjct: 181 EDYKVVRIIENCEYSDDEQTFYHRIALPHTAEVYTTSSKSWKEIKIDISS-DIYSCSSSV 239

Query: 211 AVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVY 270
            +KG  +W A+G      E++++S+ +  E F     P      +     + Q+ +LA +
Sbjct: 240 YLKGFCYWYASG-----GEEYILSFHVGDEAFHIIQFPSGRESGFTFDYIFLQNDSLASF 294

Query: 271 PGLGFRSRLSNRFELWVMNEGKG----WTRTFNTA-FERIAWPVGSFRDSKIIMKSV-DQ 324
               + S  S  F++WVM++  G    WT+      F+ I +P+  ++  +++M +   +
Sbjct: 295 CSPHYPSEDSKLFQIWVMDDYDGIESSWTKLLTVGPFKGIQYPLTLWKCDELLMLAFGGK 354

Query: 325 FFLFNPKTK--RNFILPIDSGMGYSYKVFTYVDSIVAVN 361
              +N  T+  ++  +P        +K   YV SIV + 
Sbjct: 355 TTSYNTSTRNLKSLHIPPILDRVVDFKALIYVKSIVPLK 393

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125995264|dbj|BAF47180.1| MdSFBB3-beta [Malus x domestica]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 167/357 (46%), Gaps = 54/357 (15%)

Query: 10  SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNH------SLI 63
           S  P   + +IL +LP KS++RFKC+ KSW  LI    FV  HLN S+ N        L+
Sbjct: 7   SETPEDKVVEILCRLPPKSLMRFKCIRKSWCTLINRPSFVAKHLNNSVDNKLSSSTCILL 66

Query: 64  VRYYNHAFGNDS-------GLMLLRSDLKQHQVE-------LP-PLEGLSTFPKIVGSCN 108
            R   H F + S         + L  D  +H +        +P PLE    F  I G CN
Sbjct: 67  NRSQAHIFPDQSWKQEVFWSTINLSIDSDEHNLHYDVEDLIIPFPLED-HDFVLIFGYCN 125

Query: 109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMV-----SLGFGFNQDTN 163
           G++C+D     G   +L NPAT EF+ LP   L +   K  + +     +LGFG++ +  
Sbjct: 126 GIVCVDA----GKNVLLCNPATREFRQLPDSCLLQPPPKGKFELETTFQALGFGYDCNAK 181

Query: 164 DYVLVRIV-------NFQARYDAI-----AEVYSTSTGKWKEVAAGTGSCVIYGGQDAVA 211
           +Y +VRIV       + Q  Y  I     AEVY+T+   WKE+     S   Y    +V 
Sbjct: 182 EYKVVRIVENCEYSDDEQTFYHRIALPHTAEVYTTAANFWKEIKIDI-SIKTYHCSCSVY 240

Query: 212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYP 271
           +KG  +W A+      NE++++++ +  E F    +P      +     + ++ +LA + 
Sbjct: 241 LKGFCYWFASD-----NEEYILAFYLGDETFHIIQLPSRRESGFTFDYIFLRNESLASFC 295

Query: 272 GLGFRSRLSNRFELWVMNEGKG----WTRTFNTA-FERIAWPVGSFRDSKIIMKSVD 323
                S  S  FE+WVM++  G    WT+      F+ + +P+  ++  +++M + D
Sbjct: 296 SPYNPSEDSKLFEIWVMDDYDGVSSSWTKLLTVGPFKGVEYPLTLWKCDELLMLASD 352

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.641	0.573	0.285	7.7e-21
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.882	0.925	0.238	4.5e-17
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.719	0.665	0.259	1.8e-12
TAIR|locus:2088985	386	AT3G17280 "AT3G17280" [Arabido	0.604	0.598	0.252	3.3e-12
TAIR|locus:2152064	392	AT5G65850 "AT5G65850" [Arabido	0.871	0.849	0.259	6e-12
TAIR|locus:2135079	378	AT4G04690 "AT4G04690" [Arabido	0.701	0.708	0.255	1.5e-11
TAIR|locus:2018017	383	AT1G62270 "AT1G62270" [Arabido	0.717	0.715	0.242	2.1e-11
TAIR|locus:2041016	420	AT2G43260 [Arabidopsis thalian	0.696	0.633	0.240	2.7e-11
TAIR|locus:2058136	401	AT2G43440 "AT2G43440" [Arabido	0.534	0.508	0.275	4.5e-11
TAIR|locus:2076309	389	AT3G10240 "AT3G10240" [Arabido	0.688	0.676	0.262	4.8e-11

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
 Identities = 78/273 (28%), Positives = 124/273 (45%)

Query:   102 KIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPT---PSLTESRLKTFWMVSLGFGF 158
             +IVGS NGL+C  +S   G  F L+NP T + K LP    P   E     F   + GFGF
Sbjct:   164 EIVGSSNGLVC--ISPGEGAVF-LYNPTTGDSKRLPENFRPKSVEYERDNFQ--TYGFGF 218

Query:   159 NQDTNDYVLVRIVNFQARYDAI-AEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLH 217
             +  T+DY LV++V      D + A VYS     W+ +               V   G +H
Sbjct:   219 DGLTDDYKLVKLV--ATSEDILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIH 276

Query:   218 WIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQ-SL--ALAVYPGLG 274
             W+        N++ VV++D+  E F    +P+   DC  +  ++   SL   L V     
Sbjct:   277 WVFTESRH--NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV---- 330

Query:   275 FRSRLSNRFELWVMNE---GKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNP 330
               S      ++WVM+E    K W+R       R   P+ S ++ + ++  +D    L+N 
Sbjct:   331 -NSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNF 389

Query:   331 KTKRNFILPIDSGMGYS--YKVFTYVDSIVAVN 361
             +T  +  L I  G+  S  ++  TYV+S+++ N
Sbjct:   390 ETNASSNLGI-CGVKLSDGFEANTYVESLISPN 421

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.5e-17, P = 4.5e-17
 Identities = 91/382 (23%), Positives = 170/382 (44%)

Query:     2 TTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHL-------- 53
             TT +  +  ++PL ++ +ILL+LP+KS+ RFKCV  SW  LI  + F   H         
Sbjct:     4 TTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKA 63

Query:    54 NCSIRN-HSLIV--RYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGL 110
               S ++ + +I   RY+  +    S        + +H  EL   +    + ++VG+C+GL
Sbjct:    64 TTSTKSPYGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRD----YYQVVGTCHGL 119

Query:   111 LCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRI 170
             +C  V   +  +  LWNP     + L +  L  S  +   +V+ GFG+++  +DY +V +
Sbjct:   120 VCFHVD--YDKSLYLWNPTIKLQQRLSSSDLETSDDEC--VVTYGFGYDESEDDYKVVAL 175

Query:   171 VNFQARYDAIAEVYSTSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNE 229
             +  + +     ++YST    W+   +  +G  V    +  + + G L+W A       + 
Sbjct:   176 LQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSS---SS 232

Query:   230 KFVVSYDMNLELFWRTAMPEL-PTDCYVKALSYDQS-LALAVYPGLGFRSRLSNRFELWV 287
               ++SYDM+ + F     P      C+   L   +  L++  Y       + +N  ++WV
Sbjct:   233 WTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCY------CKGANA-DVWV 285

Query:   288 MNE-GK--GWTRTFN----TAFERIAWPVGSFRDSKIIMKSVDQ-FFLFNPKTKRNFILP 339
             M E G+   W++  +    T F R  W      D  +++        L+N    R F  P
Sbjct:   286 MKEFGEVYSWSKLLSIPGLTDFVRPLW----ISDGLVVLLEFRSGLALYNCSNGR-FHYP 340

Query:   340 IDSGMGYSYKVFTYVDSIVAVN 361
             + + +        Y+ ++V+ N
Sbjct:   341 VSNSISGCRDAKVYLKTMVSPN 362

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 82/316 (25%), Positives = 141/316 (44%)

Query:     9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIR--NHSLIV-R 65
             ++++P+ I+ DI L+LP K++VR + +SK    LI   +F+ +HL+  ++  +H +I+ R
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    66 YYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVL 125
                  +  D   +   SD     VE P   G  T  ++ GS NGL+ L  +S   +A  +
Sbjct:    61 GALRLYSVDLDSLDSVSD-----VEHPMKRGGPT--EVFGSSNGLIGLS-NSPTDLA--V 110

Query:   126 WNPATNEFKGLPTPSLT-ESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-RYDAIA-- 181
             +NP+T +   LP  S+       T   V  G G++  ++DY +VR+V F+    D +   
Sbjct:   111 FNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCS 170

Query:   182 -----EVYSTSTGKWKEVAAGTGSC---------VIYGGQDAVAVKGVLHWIANGIGVLV 227
                  +V+S     WK + +   S          ++Y     V     LHW+      L+
Sbjct:   171 FPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLI 230

Query:   228 NEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPG-LGFRSRLSNRF-EL 285
                 +V +D+ LE F     PE   +  V     D  + + V  G L         + ++
Sbjct:   231 AFNLIVRFDLALEEFEIVRFPEAVANGNV-----DIQMDIGVLDGCLCLMCNYDQSYVDV 285

Query:   286 WVMNEGK---GWTRTF 298
             W+M E      WT+ F
Sbjct:   286 WMMKEYNVRDSWTKVF 301

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2088985 AT3G17280 "AT3G17280" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 62/246 (25%), Positives = 110/246 (44%)

Query:     7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRY 66
             TT+S +P  ++ +IL +LP KSI + K   K W  L K  +FV   L  + R    ++ +
Sbjct:     2 TTISDLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNH 61

Query:    67 YNHAFGND-SGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGL-LCLDVSSAFGMAFV 124
               ++   D  G+    S        L   EG       +  CNGL LC    +      V
Sbjct:    62 EVNSISVDIHGIPKGYSVSMDFTGTLTIPEGSDLEIFRIHHCNGLFLC----ATMNCRLV 117

Query:   125 LWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTN--DYVLVRIVNFQARYDAIAE 182
             +WNP T +   +    +  +R  +  + +LG G ++ ++   Y ++R  +   +   ++E
Sbjct:   118 VWNPCTGQITWI----IPRTRYDSDDIYALGCGDDKSSSLHSYKILRCCDDNQK-KPVSE 172

Query:   183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF 242
             +Y  S+  W+ +   T +C I    + VA+K   +W A+        KF++ +D   E F
Sbjct:   173 IYDFSSSSWRVLDGVTANCFIEC--NGVALKESAYWYASDKRETPKGKFILRFDFATERF 230

Query:   243 WRTAMP 248
              R  +P
Sbjct:   231 ARLCLP 236

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2152064 AT5G65850 "AT5G65850" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 6.0e-12, P = 6.0e-12
 Identities = 98/377 (25%), Positives = 157/377 (41%)

Query:     4 NDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLI 63
             N T     +P+ II +ILL+LP KSI   +CVSK W+ +I   +F    L  S+    L+
Sbjct:    27 NKTEKSVQIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRPQLL 86

Query:    64 VRYYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFP---KIVGSCNGLLCLDVSSAFG 120
                       D  L    S   Q+  E      L  F    KI    NGL+C        
Sbjct:    87 F-----CCKKDGNLFFFSSPQLQNPYENSSAISLKNFSLCYKISRPVNGLICFKRKEMNE 141

Query:   121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAI 180
                V+ NP+T     LP P      +KT    S  F +      + +  ++++++  D  
Sbjct:   142 TVTVICNPSTGHTLSLPKP------MKTSIGPSRFFVYEPIQKQFKV--LLSYKS--DE- 190

Query:   181 AEVYSTSTGK--WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMN 238
              +V +  TG+  W+ +       +   G   + + GVL++ A  I +   +  +V +D+ 
Sbjct:   191 HQVLTLGTGELSWRIIECSMPHIL---GMSEICINGVLYYPA--INLSSGDYIIVCFDVR 245

Query:   239 LELF-WRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMN--EGKGW 294
              E F + T M E     +   L +Y+  LA  V     F    S   ELWV+   E K W
Sbjct:   246 SEKFRFITVMEEFIKAAHDGTLINYNGKLASLVSERYCFVDGRSKSIELWVLQDAEKKEW 305

Query:   295 TR-TFNT-AF--ERIAWP----VGSFRDSKIIMKSVDQ---F--FLFNPKTKRNFILPID 341
             ++ T+   A+   RI       VG  R ++I++    Q   F  + FN + K    + I 
Sbjct:   306 SKHTYVLPAWWQHRIGTLNLRFVGVTRTNEIMLSPCYQTVPFDVYYFNIERKTMMSVAIQ 365

Query:   342 SGMGYS-YKVFTYVDSI 357
                 +  + VFTY+D +
Sbjct:   366 GMEAFQGHLVFTYLDHV 382

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135079 AT4G04690 "AT4G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 77/301 (25%), Positives = 129/301 (42%)

Query:    11 SVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHA 70
             S+P  ++ +IL + P +S+ RFK   K W  +I S  F+  HL+ S       +R  +H 
Sbjct:    10 SLPFELVEEILKKTPAESLNRFKSTCKQWYGIITSKRFMYNHLDHSPER---FIRIDDHK 66

Query:    71 FGNDSGLML-LRSDLKQHQVELPPLEGLSTFPKIVGSCNGL-LCLDVSSAFGMA----FV 124
                    M  + SD     V   P     +F  +V  C+GL LC+   S++         
Sbjct:    67 TVQIMDPMTGIFSDSPVPDVFRSP----HSFASMV-HCDGLMLCICSDSSYERTREANLA 121

Query:   125 LWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGF-NQDTNDYVLVRIVNFQARYDAIAEV 183
             +WNP T + K +  P   +S  +T +    G G+ N    +Y +VR     +  D   E+
Sbjct:   122 VWNPVTKKIKWIE-P--LDSYYETDYF---GIGYDNTCRENYKIVRFSGPMSFDDTECEI 175

Query:   184 YSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW 243
             Y   +  W+ +   T    +Y     V+VKG ++WIA+       EKF++ +D ++E F 
Sbjct:   176 YEFKSDSWRTL--DTKYWDVYTQCRGVSVKGNMYWIAD-----TKEKFILRFDFSMETFK 228

Query:   244 RTAM-PELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN----EGKGWTRTF 298
                + P +     +   S D+   L      G    +S    +W+ N    E   +T+ F
Sbjct:   229 NVCVCPPIGCTGRLGCFSGDRLPLLLQDTDFGGEEEVSTDIAVWLTNKLSDEVVSFTKYF 288

Query:   299 N 299
             N
Sbjct:   289 N 289

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2018017 AT1G62270 "AT1G62270" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 75/309 (24%), Positives = 136/309 (44%)

Query:     1 MTTNDTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNH 60
             MTT  T++ SS+P  ++ DIL ++P  S+ R +   K W  L     F   H + + +  
Sbjct:     1 MTTLKTSSFSSLPWDLVEDILARVPATSLKRLRSTCKQWNFLFNDQIFTKMHFDKAEKQF 60

Query:    61 S-LIVRYYNHAFGNDSGLMLLRSDLKQH-QV--EL----PPLEGLSTFPKIVGSCNGLL- 111
               LI+R Y         L  L  ++    +V  EL    P      TF   V  CNGLL 
Sbjct:    61 LVLILRLYT-VCSMSLDLRGLHDNIDPSIEVKGELSLIDPHCSSRKTFVSKVFHCNGLLL 119

Query:   112 CLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIV 171
             C  ++   G+  V+WNP T++ + + T  +  +R   +   +LG+G  +   +Y +++ +
Sbjct:   120 CTTMT---GL--VVWNPCTDQTRWIKT-EVPHNRNDKY---ALGYGNYKSCYNYKIMKFL 170

Query:   172 NFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEK- 230
             + ++ +D   E+Y  ++  W+ +   T    I    + V+++G  +WIA+     + E+ 
Sbjct:   171 DLES-FDL--EIYEVNSNSWRVLGTVTPDFTIPLDAEGVSLRGNSYWIASHKREEIEEEE 227

Query:   231 ----------FVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLS 280
                       F++S+D   E F       LP  C     +   S        L F+   +
Sbjct:   228 EEENEYFINDFLISFDFTTERFGPRV--SLPFKCESSWDTISLSCVREERLSLFFQDDGT 285

Query:   281 NRFELWVMN 289
              + E+W+ N
Sbjct:   286 LKMEIWMTN 294

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 75/312 (24%), Positives = 151/312 (48%)

Query:    16 IITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRN-HSLIVRYYNHAFGND 74
             ++ ++LL+LP KSI++ + VSK W  L++SS F   H+  S++N    I+  YN   G  
Sbjct:    17 LLEEVLLRLPTKSILKCRIVSKQWRSLLESSRFAERHM--SLQNSRRRILAAYNCDCGGR 74

Query:    75 SGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFK 134
               L L  S  +  + E+  L   ++ P +  +C G++C           ++ NP+T++ +
Sbjct:    75 RKL-LPESRFEGDE-EIVYLHCDASRPSM--TCQGVICFPEQDWI----IVLNPSTSQLR 126

Query:   135 GLPTPSLTESRL-----KTF----WMVSLGFGFNQDTNDYVLVRI--VNFQARYDA-IAE 182
               P+      R      KTF    W+  +GFG ++    Y +VR+    ++ R +  + E
Sbjct:   127 RFPSGLNHNCRFRIGLWKTFSPGNWV--MGFGRDKVNGRYKVVRMSFAFWRVRQEEPVVE 184

Query:   183 --VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE 240
               V    TG+W++++      V+  G  +V V G ++W+   I  +     +++ D++ E
Sbjct:   185 CGVLDVDTGEWRKLSPPP--YVVNVGSKSVCVNGSIYWLH--IQTVYR---ILALDLHKE 237

Query:   241 LFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRF--ELWVMNEGKG-WTRT 297
              F +  +P        + ++ +  L LA+       +R+S  +  E+W M+  K  W++T
Sbjct:   238 EFHKVPVPPTQITVDTQMVNLEDRLVLAI-------TRVSPEWILEVWGMDTYKEKWSKT 290

Query:   298 FNTAFER--IAW 307
             ++ + +   ++W
Sbjct:   291 YSISLDHRVVSW 302

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2058136 AT2G43440 "AT2G43440" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
 Identities = 62/225 (27%), Positives = 110/225 (48%)

Query:     5 DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIV 64
             +T ++  VP  ++ DI L+LP+KSI++FK VS+ W  +++S  FV    N   ++H  I+
Sbjct:     7 NTNSIYIVP-ELLEDIFLRLPLKSILKFKTVSRQWRSILESKLFVERRGNLQ-KHHRKIL 64

Query:    65 RYYN-HAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAF 123
               YN + F   S  +   S  +  + E+  L   +  P +  +C+GLLC+     F    
Sbjct:    65 AAYNCNYFMRPS--IFPESRFEGDE-EIVYLHCDAAQPSM--TCDGLLCITEPGWFN--- 116

Query:   124 VLWNPATNEFKGLPT-PSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE 182
             VL NP+  + +  P  P   +   +  W+  LGFG +  T  Y +VR+  F   Y+    
Sbjct:   117 VL-NPSAGQLRRFPPGPGPVKGPQEN-WL--LGFGRDNVTGRYKIVRMC-FHDCYEF--G 169

Query:   183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLV 227
             +    TG W ++ +   + +   G  +V V G ++W+    G ++
Sbjct:   170 ILDIETGVWSKLRSPPHNML--PGSKSVCVNGSIYWLQISAGYII 212

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 78/297 (26%), Positives = 127/297 (42%)

Query:    10 SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFV---TAH----LNCSIRNHSL 62
             SS+PL ++++ILL+LP KS+ RF+CVSK W  +     F+   T      L C   N   
Sbjct:    25 SSIPLDLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINLLTTRSPRLLLCFKANEKF 84

Query:    63 IVR---YYNHAFGNDSGLMLLRSDLKQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAF 119
              V     +   F   +        + ++ +E    E ++ FP    S NGL+C   S+  
Sbjct:    85 FVSSIPQHRQTFETWNKSHSYSQLIDRYHMEFS--EEMNYFPP-TESVNGLICFQESARL 141

Query:   120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA 179
                 ++WNP+T +   LP P+   + L  F    LG+   +  +    V  + F A YD 
Sbjct:   142 ----IVWNPSTRQLLILPKPNGNSNDLTIF----LGYDPVEGKHK---VMCMEFSATYDT 190

Query:   180 IAEVYSTSTGK-WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMN 238
                +   S  K W+ V         Y       + GV++ IA    + V    ++S+D+ 
Sbjct:   191 CRVLTLGSAQKLWRTVKTHNKHRSDYYDSGR-CINGVVYHIAYVKDMCV--WVLMSFDVR 247

Query:   239 LELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWT 295
              E+F    M ELP+    K +  D +  LA    +G      N   LW++ +   W+
Sbjct:   248 SEIF---DMIELPSSDVHKDVLIDYNGRLAC---VGREIIEKNGIRLWILEKHNKWS 298

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	5e-16
pfam00646	48	pfam00646, F-box, F-box domain	9e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-05

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 24/202 (11%)

Query: 104 VGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTN 163
           V  C+GL+C           V+WNP+T + + LPTP    S  ++    +   G++    
Sbjct: 1   VVPCDGLICFSYGKRL----VVWNPSTGQSRWLPTPKSRRSNKES---DTYFLGYDPIEK 53

Query: 164 DYVLVRIVNFQARYDAIA-EVYSTSTGKWKEVAAGTGSCVIYGGQ-DAVAVKGVLHWIAN 221
            Y ++   +     +    +VY+  +  W+ +     S   +  +   V + GVL+++A 
Sbjct: 54  QYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTI---ECSPPHHPLKSRGVCINGVLYYLAY 110

Query: 222 GIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPG-LG--FRSR 278
            +    +  F+VS+D++ E F       +P  C          L+L  Y G L    + +
Sbjct: 111 TLKTNPDY-FIVSFDVSSERF----KEFIPLPC--GNSDSVDYLSLINYKGKLAVLKQKK 163

Query: 279 LSNRFELWVMNEGKG--WTRTF 298
            +N F+LWV+N+     W++ F
Sbjct: 164 DTNNFDLWVLNDAGKQEWSKLF 185

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 10 SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF 48
            +P  ++ +IL +L  K ++R   VSK W  L+ S + 
Sbjct: 4  LDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 13 PLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF 48
          P  I+ +IL +L  K ++R + VS+ W  LI S +F
Sbjct: 2  PDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.66
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.64
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.61
PHA02713	557	hypothetical protein; Provisional	99.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.53
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.51
PHA02713	557	hypothetical protein; Provisional	99.5
PHA03098	534	kelch-like protein; Provisional	99.44
PHA02790	480	Kelch-like protein; Provisional	99.41
PLN02153	341	epithiospecifier protein	99.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.25
PHA03098	534	kelch-like protein; Provisional	99.21
PLN02193	470	nitrile-specifier protein	99.15
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.15
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.14
PHA02790	480	Kelch-like protein; Provisional	99.12
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.97
PLN02153	341	epithiospecifier protein	98.96
PLN02193	470	nitrile-specifier protein	98.94
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.83
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.82
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.78
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.77
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.73
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.41
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.41
KOG1230	521	consensus Protein containing repeated kelch motifs	98.18
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.64
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.6
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.48
KOG1230	521	consensus Protein containing repeated kelch motifs	97.29
PF13964	50	Kelch_6: Kelch motif	97.03
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	96.58
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	96.51
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.45
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	95.76
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	95.72
smart00284	255	OLF Olfactomedin-like domains.	95.69
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.49
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	94.8
PF13964	50	Kelch_6: Kelch motif	94.6
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	94.56
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.35
KOG2055	514	consensus WD40 repeat protein [General function pr	94.32
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.3
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	94.3
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.86
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.73
COG4946	668	Uncharacterized protein related to the periplasmic	93.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.94
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.94
smart00612	47	Kelch Kelch domain.	92.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.12
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	92.09
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	92.03
smart00612	47	Kelch Kelch domain.	91.99
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.61
KOG4341	483	consensus F-box protein containing LRR [General fu	90.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.43
PF13415	49	Kelch_3: Galactose oxidase, central domain	89.67
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	89.33
KOG3545	249	consensus Olfactomedin and related extracellular m	89.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	88.95
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	88.52
PLN02772	398	guanylate kinase	88.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	88.41
PRK04043	419	tolB translocation protein TolB; Provisional	87.51
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	87.01
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	86.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	85.89
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	85.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	85.25
PRK11028	330	6-phosphogluconolactonase; Provisional	84.74
COG1520	370	FOG: WD40-like repeat [Function unknown]	84.55
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	84.21
KOG0310	487	consensus Conserved WD40 repeat-containing protein	83.58
cd01207	111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	83.47
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.88
PF13415	49	Kelch_3: Galactose oxidase, central domain	81.79
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	80.91
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	80.36

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=7.8e-33  Score=243.37  Aligned_cols=214  Identities=24%  Similarity=0.484  Sum_probs=163.0

Q ss_pred             eeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-CCCCEEE
Q 045675          104 VGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-RYDAIAE  182 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~  182 (382)
                      ++|||||||+...    ..++||||+||+++.||+++.....  ... ..++||||+.+++||||++..... .....++
T Consensus         1 ~~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~--~~~-~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~   73 (230)
T TIGR01640         1 VVPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSN--KES-DTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQ   73 (230)
T ss_pred             CcccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccc--ccc-ceEEEeecccCCcEEEEEEEeecCCCCCccEE
Confidence            4799999998765    3799999999999999977642111  111 257999999999999999987421 2346899


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCC--CeeeEE
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTD--CYVKAL  259 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~--~~~~l~  259 (382)
                      ||++++++||.++..+..... . +.+|++||.+||+....... ....|++||+.+|+|+ .+++|.....  ....|+
T Consensus        74 Vys~~~~~Wr~~~~~~~~~~~-~-~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        74 VYTLGSNSWRTIECSPPHHPL-K-SRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI  150 (230)
T ss_pred             EEEeCCCCccccccCCCCccc-c-CCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence            999999999998854332222 2 35999999999999764221 1138999999999999 5898876432  356799


Q ss_pred             EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC--eeEEEEeecCCc------ccceEEeeCCcEEEEEcC---e-EEE
Q 045675          260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG--WTRTFNTAFERI------AWPVGSFRDSKIIMKSVD---Q-FFL  327 (382)
Q Consensus       260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~--W~~~~~i~~~~~------~~~~~~~~~g~l~l~~~~---~-~~~  327 (382)
                      +++|+||++...  .    ....++||+|++++.  |+++++|++...      ..|+++.++|+|++...+   . ++.
T Consensus       151 ~~~G~L~~v~~~--~----~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~  224 (230)
T TIGR01640       151 NYKGKLAVLKQK--K----DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFY  224 (230)
T ss_pred             EECCEEEEEEec--C----CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEE
Confidence            999999999986  3    235699999998743  999999975322      347888889998888774   3 999


Q ss_pred             EeCCCC
Q 045675          328 FNPKTK  333 (382)
Q Consensus       328 yd~~t~  333 (382)
                      ||++++
T Consensus       225 y~~~~~  230 (230)
T TIGR01640       225 YNVGEN  230 (230)
T ss_pred             EeccCC
Confidence            999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.66  E-value=8.9e-15  Score=121.26  Aligned_cols=140  Identities=20%  Similarity=0.331  Sum_probs=100.4

Q ss_pred             eEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCC--CCeeeEEE-eCCeEEEEEecCCCccCCCCCeEE
Q 045675          209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPT--DCYVKALS-YDQSLALAVYPGLGFRSRLSNRFE  284 (382)
Q Consensus       209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~--~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~  284 (382)
                      +|++||.+||++...... ....|++||+++|+| +.+++|....  .....|++ .+++||++...  .    ....++
T Consensus         1 gV~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~--~----~~~~~~   73 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC--D----ETSKIE   73 (164)
T ss_pred             CEEECCEEEeeEEecCCC-CceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec--c----CCccEE
Confidence            589999999999977432 112799999999999 8889998765  25677754 47899999765  2    356799


Q ss_pred             EEEECCCC---C-eeEEEEeecCCc---c-----cceEEeeCCcEEEEEcC--------eEEEEeCCCCcEEEEeeeCCC
Q 045675          285 LWVMNEGK---G-WTRTFNTAFERI---A-----WPVGSFRDSKIIMKSVD--------QFFLFNPKTKRNFILPIDSGM  344 (382)
Q Consensus       285 iW~l~~~~---~-W~~~~~i~~~~~---~-----~~~~~~~~g~l~l~~~~--------~~~~yd~~t~~~~~v~~~~~~  344 (382)
                      ||+|++++   . |+|.++|++...   .     ..+.+..++++++..+.        .+++|+ +++..+++.+....
T Consensus        74 IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~  152 (164)
T PF07734_consen   74 IWVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKS  152 (164)
T ss_pred             EEEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCC
Confidence            99999642   2 999999976543   1     22333344556666543        377888 77788888775433


Q ss_pred             CCeEEEEEEeec
Q 045675          345 GYSYKVFTYVDS  356 (382)
Q Consensus       345 ~~~~~~~~y~~S  356 (382)
                      ..++.++.|+||
T Consensus       153 ~~~~~~~~YvpS  164 (164)
T PF07734_consen  153 SCWPSICNYVPS  164 (164)
T ss_pred             CCCCCEEEECCC
Confidence            336778899987

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.64  E-value=2.5e-13  Score=123.91  Aligned_cols=297  Identities=11%  Similarity=0.031  Sum_probs=156.4

Q ss_pred             CCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhhcCCHHHHHHHHccCCCceeeEEEeeccCCCCce-eeeeecCCC
Q 045675            7 TTVSSVPLVIITDILLQLP-IKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRNHSLIVRYYNHAFGNDS-GLMLLRSDL   84 (382)
Q Consensus         7 ~~~~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~li~sp~F~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   84 (382)
                      ..|+.||+||+..|..||| ..++.|||+|||+||+.+....= +.++...  ..+++.... ...+... .......+.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNPFRTR--PLILFNPIN-PSETLTDDRSYISRPGA   77 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCCcccc--cccccCccc-CCCCccccccccccccc
Confidence            4689999999999999998 57999999999999998774110 0000000  011111100 0000000 000000000


Q ss_pred             ---cceeecCCCCCCCCCCCeeeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeE----EEEEE-
Q 045675           85 ---KQHQVELPPLEGLSTFPKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWM----VSLGF-  156 (382)
Q Consensus        85 ---~~~~~~~p~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~----~~~~~-  156 (382)
                         ...-+..+.         ..++..|+|.-.+......++.+.||+++....+|+.....-   +..+    ..+.+ 
T Consensus        78 ~ls~~~~~r~~~---------~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll---~f~v~ei~~~y~l~  145 (373)
T PLN03215         78 FLSRAAFFRVTL---------SSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLL---EFTVSEIREAYQVL  145 (373)
T ss_pred             eeeeeEEEEeec---------CCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceee---eeEEEEccceEEEE
Confidence               000001110         013568999765543125688999999999777774322110   1100    01111 


Q ss_pred             EeeCC------------------C-CCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEE
Q 045675          157 GFNQD------------------T-NDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLH  217 (382)
Q Consensus       157 g~d~~------------------~-~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~ly  217 (382)
                      +.+..                  . .+|-|+++...     .++....  .+.|..++.. .. ..   ...++.+|++|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~-----g~l~~w~--~~~Wt~l~~~-~~-~~---~DIi~~kGkfY  213 (373)
T PLN03215        146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD-----GKINYWD--GNVLKALKQM-GY-HF---SDIIVHKGQTY  213 (373)
T ss_pred             ecccccccccceeEEEEEEeecCCCcceEEEEEeec-----CcEeeec--CCeeeEccCC-Cc-ee---eEEEEECCEEE
Confidence            11100                  0 11223333221     0111122  4788888643 22 22   48899999999


Q ss_pred             EEeecccccccccEEEEEECCCceeeEeCCC-----C-CCCCCeeeEEEeCCeEEEEEecCCCcc---------CCCCCe
Q 045675          218 WIANGIGVLVNEKFVVSYDMNLELFWRTAMP-----E-LPTDCYVKALSYDQSLALAVYPGLGFR---------SRLSNR  282 (382)
Q Consensus       218 wl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P-----~-~~~~~~~~l~~~~g~L~~~~~~~~~~~---------~~~~~~  282 (382)
                      .+...+       .+.++|..- +.+.+..+     . ........|++..|.|++|........         ...+..
T Consensus       214 AvD~~G-------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~  285 (373)
T PLN03215        214 ALDSIG-------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVG  285 (373)
T ss_pred             EEcCCC-------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeE
Confidence            996554       666777432 12222211     1 111235779999999999998511100         012357


Q ss_pred             EEEEEECCCCC-eeEEEEeecCCc----ccceEEe-------eCCcEEEEEcCeEEEEeCCCCcEEEEe
Q 045675          283 FELWVMNEGKG-WTRTFNTAFERI----AWPVGSF-------RDSKIIMKSVDQFFLFNPKTKRNFILP  339 (382)
Q Consensus       283 ~~iW~l~~~~~-W~~~~~i~~~~~----~~~~~~~-------~~g~l~l~~~~~~~~yd~~t~~~~~v~  339 (382)
                      ++||+++...+ |+++..+.-..+    -..+++.       ..+.||+..+....+||++.++..-+.
T Consensus       286 f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~  354 (373)
T PLN03215        286 FKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIE  354 (373)
T ss_pred             EEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceE
Confidence            99999987644 999987753332    1111111       223488888778889999999866553

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.61  E-value=8.9e-14  Score=136.58  Aligned_cols=218  Identities=16%  Similarity=0.062  Sum_probs=158.7

Q ss_pred             eeeeccCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCC
Q 045675          102 KIVGSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY  177 (382)
Q Consensus       102 ~~~~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~  177 (382)
                      .-++..+|.|.+..+.+    ....+..+||-+++|..+|+++..+          .++|.....+.-.+|+... +...
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R----------~~~~v~~l~g~iYavGG~d-g~~~  394 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR----------SDFGVAVLDGKLYAVGGFD-GEKS  394 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc----------ccceeEEECCEEEEEeccc-cccc
Confidence            34566688888776653    2567999999999999999998743          2344444444555555544 3445


Q ss_pred             CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCee
Q 045675          178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYV  256 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~  256 (382)
                      ...+|.|++.++.|..++.+...+..   ..++.++|.+|-+++..........+.+||+.+++|+.+ +++..+  ...
T Consensus       395 l~svE~YDp~~~~W~~va~m~~~r~~---~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--~~~  469 (571)
T KOG4441|consen  395 LNSVECYDPVTNKWTPVAPMLTRRSG---HGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--SGF  469 (571)
T ss_pred             cccEEEecCCCCcccccCCCCcceee---eEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--ccc
Confidence            56999999999999999999655544   588999999999999765544567999999999999998 677666  566


Q ss_pred             eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEe
Q 045675          257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFN  329 (382)
Q Consensus       257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd  329 (382)
                      .+++++|+|+++++.  .+ ......++.+-...+ .|..+..|....-..-+.+ .++.+|++.+.       .+-.||
T Consensus       470 g~a~~~~~iYvvGG~--~~-~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~~~~~l~~ve~yd  544 (571)
T KOG4441|consen  470 GVAVLNGKIYVVGGF--DG-TSALSSVERYDPETN-QWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFDGNNNLNTVECYD  544 (571)
T ss_pred             eEEEECCEEEEECCc--cC-CCccceEEEEcCCCC-ceeEcccCccccccccEEE-ECCEEEEEecccCccccceeEEcC
Confidence            789999999999997  32 223445565555544 5999976644332222233 35667776653       799999


Q ss_pred             CCCCcEEEEee
Q 045675          330 PKTKRNFILPI  340 (382)
Q Consensus       330 ~~t~~~~~v~~  340 (382)
                      +++++|+...-
T Consensus       545 p~~d~W~~~~~  555 (571)
T KOG4441|consen  545 PETDTWTEVTE  555 (571)
T ss_pred             CCCCceeeCCC
Confidence            99999999854

>PHA02713 hypothetical protein; Provisional

Probab=99.58  E-value=1.7e-13  Score=135.10  Aligned_cols=222  Identities=12%  Similarity=0.006  Sum_probs=148.4

Q ss_pred             eeccCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCC
Q 045675          104 VGSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA  179 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~  179 (382)
                      .+..+|.|.+..+..    ....++.+||.+++|..+|+++....          .++.....+...|++... ......
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~----------~~~~~~~~g~IYviGG~~-~~~~~~  367 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC----------RFSLAVIDDTIYAIGGQN-GTNVER  367 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh----------ceeEEEECCEEEEECCcC-CCCCCc
Confidence            455678877666531    13568899999999999999886432          111111223344444432 122235


Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeeccccc-----------------ccccEEEEEECCCcee
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVL-----------------VNEKFVVSYDMNLELF  242 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----------------~~~~~i~~fD~~~~~~  242 (382)
                      .+++|++.+++|..++.++.+...   ..++.++|++|.+++.....                 .....+.+||+.+++|
T Consensus       368 sve~Ydp~~~~W~~~~~mp~~r~~---~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W  444 (557)
T PHA02713        368 TIECYTMGDDKWKMLPDMPIALSS---YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW  444 (557)
T ss_pred             eEEEEECCCCeEEECCCCCccccc---ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence            799999999999999988655443   57889999999998754210                 0135799999999999


Q ss_pred             eEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE
Q 045675          243 WRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS  321 (382)
Q Consensus       243 ~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~  321 (382)
                      +.+ ++|..+  ....+++++|+|+++++.  .........++.+-.+.++.|+.+..|+.......+++. +|.||+..
T Consensus       445 ~~v~~m~~~r--~~~~~~~~~~~IYv~GG~--~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~G  519 (557)
T PHA02713        445 ETLPNFWTGT--IRPGVVSHKDDIYVVCDI--KDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTIMMLH  519 (557)
T ss_pred             eecCCCCccc--ccCcEEEECCEEEEEeCC--CCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEEEEEe
Confidence            988 555554  456788999999999886  210001123455554441259999888765444444444 67788776


Q ss_pred             cC----eEEEEeCCCCcEEEEeeeCCC
Q 045675          322 VD----QFFLFNPKTKRNFILPIDSGM  344 (382)
Q Consensus       322 ~~----~~~~yd~~t~~~~~v~~~~~~  344 (382)
                      +.    .+-+||++|++|..+.-....
T Consensus       520 g~~~~~~~e~yd~~~~~W~~~~~~~~~  546 (557)
T PHA02713        520 CYESYMLQDTFNVYTYEWNHICHQHSN  546 (557)
T ss_pred             eecceeehhhcCcccccccchhhhcCC
Confidence            53    588999999999999755433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.53  E-value=1.1e-12  Score=129.02  Aligned_cols=237  Identities=17%  Similarity=0.100  Sum_probs=161.0

Q ss_pred             ccCceEEEeeCCCC----ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675          106 SCNGLLCLDVSSAF----GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA  181 (382)
Q Consensus       106 s~~Gll~~~~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  181 (382)
                      ++.+.|.+..+...    ...+..+||.+++|..+.+++.....        ++.+.-  .+...|++....+......+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~--------~~~~~~--~~~lYv~GG~~~~~~~l~~v  351 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR--------VGVAVL--NGKLYVVGGYDSGSDRLSSV  351 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc--------ccEEEE--CCEEEEEccccCCCcccceE
Confidence            55566655554321    45678899999999999999865421        122222  22233333322112344699


Q ss_pred             EEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE
Q 045675          182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS  260 (382)
Q Consensus       182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~  260 (382)
                      +.|++.+++|..++.+...+..   ...+.++|.+|.+++.++. .....+..||+.+++|..+ +++..+  .....++
T Consensus       352 e~YD~~~~~W~~~a~M~~~R~~---~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r--~~~gv~~  425 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPMNTKRSD---FGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRR--SGHGVAV  425 (571)
T ss_pred             EEecCCCCceeccCCccCcccc---ceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcce--eeeEEEE
Confidence            9999999999999999665544   5889999999999997743 3566899999999999998 566644  6788899


Q ss_pred             eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCC
Q 045675          261 YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTK  333 (382)
Q Consensus       261 ~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~  333 (382)
                      ++|+||++++.  .........++.+-...+ .|+.+..|........+++. ++.||.+.+.       .+-.||++++
T Consensus       426 ~~g~iYi~GG~--~~~~~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  426 LGGKLYIIGGG--DGSSNCLNSVECYDPETN-TWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ECCEEEEEcCc--CCCccccceEEEEcCCCC-ceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence            99999999997  321113456666665554 59999988766555555655 6678877763       5899999999


Q ss_pred             cEEEEeeeCCCCCeEEEEEEeeceeecCC
Q 045675          334 RNFILPIDSGMGYSYKVFTYVDSIVAVNG  362 (382)
Q Consensus       334 ~~~~v~~~~~~~~~~~~~~y~~SLv~~~~  362 (382)
                      +|..+...........+......|--+++
T Consensus       502 ~W~~v~~m~~~rs~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  502 QWTMVAPMTSPRSAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             ceeEcccCccccccccEEEECCEEEEEec
Confidence            99999633211112334444444444443

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.51  E-value=3.2e-13  Score=107.26  Aligned_cols=106  Identities=23%  Similarity=0.454  Sum_probs=81.3

Q ss_pred             eEEECceEEEEeecccccccccEEEEEECCCceeeEeCCC--CCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEE
Q 045675          209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMP--ELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELW  286 (382)
Q Consensus       209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P--~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW  286 (382)
                      ++++||.+||++....  .....|++||+.+|+|+.+++|  .........|.+++|+|+++...  ...  ....++||
T Consensus         1 gicinGvly~~a~~~~--~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~--~~~--~~~~~~iW   74 (129)
T PF08268_consen    1 GICINGVLYWLAWSED--SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN--DQG--EPDSIDIW   74 (129)
T ss_pred             CEEECcEEEeEEEECC--CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec--CCC--CcceEEEE
Confidence            5889999999998721  1357999999999999999998  22223678899999999999987  310  13579999


Q ss_pred             EECCCCC--eeEEEEe-ecC-------CcccceEEeeCCcEEEE
Q 045675          287 VMNEGKG--WTRTFNT-AFE-------RIAWPVGSFRDSKIIMK  320 (382)
Q Consensus       287 ~l~~~~~--W~~~~~i-~~~-------~~~~~~~~~~~g~l~l~  320 (382)
                      +|+|++.  |++.+.+ +..       ....+.++.++|+|++.
T Consensus        75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            9998854  9988764 332       12567788888998887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=99.50  E-value=2.9e-12  Score=126.35  Aligned_cols=221  Identities=13%  Similarity=0.023  Sum_probs=140.7

Q ss_pred             eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCee
Q 045675          122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSC  201 (382)
Q Consensus       122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~  201 (382)
                      .+..+||.+++|..++++|.....        .+.+  ...+.-.|++...........++.|++.++.|..++.++..+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~--------~~~a--~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R  342 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN--------YASA--IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR  342 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc--------eEEE--EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence            567899999999999988864311        1111  112333333322111112357999999999999998886544


Q ss_pred             EEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccC---
Q 045675          202 VIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRS---  277 (382)
Q Consensus       202 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~---  277 (382)
                      ..   ..++.++|++|.+++..... ....+.+||+.+++|+.+ ++|..+  .....++++|+|+++++.  ....   
T Consensus       343 ~~---~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~--~~~~~~~  414 (557)
T PHA02713        343 CR---FSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGR--TEHIDYT  414 (557)
T ss_pred             hc---eeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCccc--ccccEEEECCEEEEEeCC--Ccccccc
Confidence            33   47889999999999865321 245799999999999998 666655  455677899999999986  2100   


Q ss_pred             --------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC--------eEEEEeCCC-Cc
Q 045675          278 --------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD--------QFFLFNPKT-KR  334 (382)
Q Consensus       278 --------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--------~~~~yd~~t-~~  334 (382)
                                    .....++.+-...+ .|+.+..|+.......+++. +|.||+..+.        .+.+||+++ ++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~  492 (557)
T PHA02713        415 SVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG  492 (557)
T ss_pred             cccccccccccccccccceEEEECCCCC-eEeecCCCCcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence                          00123333333332 49988877654433334443 6778877642        467999999 89


Q ss_pred             EEEEeeeCCCCCeEEEEEEeeceeecCC
Q 045675          335 NFILPIDSGMGYSYKVFTYVDSIVAVNG  362 (382)
Q Consensus       335 ~~~v~~~~~~~~~~~~~~y~~SLv~~~~  362 (382)
                      |+.+...........+..+...|--+++
T Consensus       493 W~~~~~m~~~r~~~~~~~~~~~iyv~Gg  520 (557)
T PHA02713        493 WELITTTESRLSALHTILHDNTIMMLHC  520 (557)
T ss_pred             eeEccccCcccccceeEEECCEEEEEee
Confidence            9998643322223444444444444544

>PHA03098 kelch-like protein; Provisional

Probab=99.44  E-value=2e-11  Score=120.90  Aligned_cols=215  Identities=14%  Similarity=0.090  Sum_probs=137.9

Q ss_pred             cCceEEEeeCCC----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          107 CNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       107 ~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      .++.|.+..+..    ....++.+||.|++|..+|+++.....        ++...  ..+...|++... .......++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~--------~~~~~--~~~~lyv~GG~~-~~~~~~~v~  361 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN--------PGVTV--FNNRIYVIGGIY-NSISLNTVE  361 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc--------ceEEE--ECCEEEEEeCCC-CCEecceEE
Confidence            356665554421    134688999999999999988753211        11111  123333443322 122345899


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEe
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSY  261 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~  261 (382)
                      +|+..+++|+..+.++.++..   +.++.++|.+|.+++..........+..||+.+++|+.+ ++|...  .....+..
T Consensus       362 ~yd~~~~~W~~~~~lp~~r~~---~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~  436 (534)
T PHA03098        362 SWKPGESKWREEPPLIFPRYN---PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYH  436 (534)
T ss_pred             EEcCCCCceeeCCCcCcCCcc---ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEE
Confidence            999999999998877554433   577889999999988532221245799999999999988 556544  34456778


Q ss_pred             CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCC
Q 045675          262 DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTK  333 (382)
Q Consensus       262 ~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~  333 (382)
                      +|+|+++++.  .........-.+|..+...+ |+.+..++........++. ++.|++..+.       .+..||++++
T Consensus       437 ~~~iyv~GG~--~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        437 DGKIYVIGGI--SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCEEEEECCc--cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            9999999886  21000001123666665434 9988766543332333333 6677776642       7899999999


Q ss_pred             cEEEEee
Q 045675          334 RNFILPI  340 (382)
Q Consensus       334 ~~~~v~~  340 (382)
                      +|+.+..
T Consensus       514 ~W~~~~~  520 (534)
T PHA03098        514 TWTLFCK  520 (534)
T ss_pred             EEEecCC
Confidence            9998864

>PHA02790 Kelch-like protein; Provisional

Probab=99.41  E-value=2.2e-11  Score=118.34  Aligned_cols=198  Identities=12%  Similarity=0.033  Sum_probs=133.7

Q ss_pred             cCceEEEeeCCC---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEE
Q 045675          107 CNGLLCLDVSSA---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEV  183 (382)
Q Consensus       107 ~~Gll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~v  183 (382)
                      .++.|.+..+.+   ....+..+||.+++|..+|+++.....        .+..  ...+...+++...    ....++.
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~--------~~~v--~~~~~iYviGG~~----~~~sve~  335 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY--------ASGV--PANNKLYVVGGLP----NPTSVER  335 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc--------ceEE--EECCEEEEECCcC----CCCceEE
Confidence            566666555431   134677899999999999998764321        1111  1123344444322    1246899


Q ss_pred             EECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeC
Q 045675          184 YSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYD  262 (382)
Q Consensus       184 yss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~  262 (382)
                      |++.+++|..++.++.++..   ..++.++|.+|.+++....   ...+.+||+.+++|+.+ ++|..+  .....++.+
T Consensus       336 ydp~~n~W~~~~~l~~~r~~---~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r--~~~~~~~~~  407 (480)
T PHA02790        336 WFHGDAAWVNMPSLLKPRCN---PAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH--YKSCALVFG  407 (480)
T ss_pred             EECCCCeEEECCCCCCCCcc---cEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc--ccceEEEEC
Confidence            99999999999888654433   5788999999999886422   24688999999999998 444444  345667899


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCCcE
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRN  335 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~  335 (382)
                      |+|+++++.           .+++-.+.+ .|+.+..|+.......+++. +|.||+..+.       .+.+||+++++|
T Consensus       408 ~~IYv~GG~-----------~e~ydp~~~-~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        408 RRLFLVGRN-----------AEFYCESSN-TWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CEEEEECCc-----------eEEecCCCC-cEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            999998763           244444332 49988877654433334443 6778887652       688999999999


Q ss_pred             EEEe
Q 045675          336 FILP  339 (382)
Q Consensus       336 ~~v~  339 (382)
                      +..+
T Consensus       475 ~~~~  478 (480)
T PHA02790        475 NIWD  478 (480)
T ss_pred             EecC
Confidence            8653

>PLN02153 epithiospecifier protein

Probab=99.28  E-value=1.1e-09  Score=102.03  Aligned_cols=223  Identities=10%  Similarity=-0.002  Sum_probs=129.7

Q ss_pred             eccCceEEEeeCCC-----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCC
Q 045675          105 GSCNGLLCLDVSSA-----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA  179 (382)
Q Consensus       105 ~s~~Gll~~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~  179 (382)
                      ...++.|.+..+..     ....++++||.+.+|..+|+....+..      ...++......+...|++... ......
T Consensus        29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~------~~~~~~~~~~~~~iyv~GG~~-~~~~~~  101 (341)
T PLN02153         29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRI------SCLGVRMVAVGTKLYIFGGRD-EKREFS  101 (341)
T ss_pred             EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCC------ccCceEEEEECCEEEEECCCC-CCCccC
Confidence            44566776654421     024689999999999998865422110      011111111123344443322 122234


Q ss_pred             EEEEEECCCCCeeeecCC-----CCeeEEeCCcceEEECceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCC
Q 045675          180 IAEVYSTSTGKWKEVAAG-----TGSCVIYGGQDAVAVKGVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPE  249 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~-----~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~  249 (382)
                      .+++|++.+++|+.++.+     +..+..   +.++..+|++|.+++.....     .....+.+||+.+++|..++.+.
T Consensus       102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~  178 (341)
T PLN02153        102 DFYSYDTVKNEWTFLTKLDEEGGPEARTF---HSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG  178 (341)
T ss_pred             cEEEEECCCCEEEEeccCCCCCCCCCcee---eEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence            799999999999988765     223333   57788999999998864211     01246899999999999885432


Q ss_pred             C--CCCCeeeEEEeCCeEEEEEecCCC---ccCC--CCCeEEEEEECCCCCeeEEEEe---ecCCcccceEEeeCCcEEE
Q 045675          250 L--PTDCYVKALSYDQSLALAVYPGLG---FRSR--LSNRFELWVMNEGKGWTRTFNT---AFERIAWPVGSFRDSKIIM  319 (382)
Q Consensus       250 ~--~~~~~~~l~~~~g~L~~~~~~~~~---~~~~--~~~~~~iW~l~~~~~W~~~~~i---~~~~~~~~~~~~~~g~l~l  319 (382)
                      .  .......++..+|+|+++......   .+..  ....++++.++.. .|+++...   |.........+ -++.||+
T Consensus       179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~-~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv  256 (341)
T PLN02153        179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG-KWTEVETTGAKPSARSVFAHAV-VGKYIII  256 (341)
T ss_pred             CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC-cEEeccccCCCCCCcceeeeEE-ECCEEEE
Confidence            1  111344567889999998764100   0000  1223444433333 49988643   22221222222 3456766


Q ss_pred             EEcC----------------eEEEEeCCCCcEEEEe
Q 045675          320 KSVD----------------QFFLFNPKTKRNFILP  339 (382)
Q Consensus       320 ~~~~----------------~~~~yd~~t~~~~~v~  339 (382)
                      ....                .++.||+++++|+.+.
T Consensus       257 ~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        257 FGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             ECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            5541                6899999999999985

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.25  E-value=2.5e-09  Score=99.98  Aligned_cols=242  Identities=10%  Similarity=0.039  Sum_probs=142.1

Q ss_pred             eccCceEEEeeCCCCceeEEEEcc--cccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-----CC
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNP--ATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-----RY  177 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~~  177 (382)
                      +..++-|.+..+.. ...++++|+  .+++|..+|+++.....       .+++..  ..+...|++......     ..
T Consensus        14 ~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~-------~~~~~~--~~~~iYv~GG~~~~~~~~~~~~   83 (346)
T TIGR03547        14 AIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRN-------QAVAAA--IDGKLYVFGGIGKANSEGSPQV   83 (346)
T ss_pred             EEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcc-------cceEEE--ECCEEEEEeCCCCCCCCCccee
Confidence            34567776655432 346777774  78889999988732111       111111  123444444432111     01


Q ss_pred             CCEEEEEECCCCCeeeecCC-CCeeEEeCCcceE-EECceEEEEeeccccc-----------------------------
Q 045675          178 DAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAV-AVKGVLHWIANGIGVL-----------------------------  226 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v-~~~G~lywl~~~~~~~-----------------------------  226 (382)
                      ...++.|++.+++|+.++.+ +....  + +.++ .++|++|.+++.....                             
T Consensus        84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~--~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T TIGR03547        84 FDDVYRYDPKKNSWQKLDTRSPVGLL--G-ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP  160 (346)
T ss_pred             cccEEEEECCCCEEecCCCCCCCccc--c-eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence            24799999999999998743 22221  1 2344 6899999998864210                             


Q ss_pred             ----ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE--ECCCC-CeeEEE
Q 045675          227 ----VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV--MNEGK-GWTRTF  298 (382)
Q Consensus       227 ----~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~--l~~~~-~W~~~~  298 (382)
                          .....+.+||+.+++|+.+ ++|.... ....++..+|+|++++..  ...  .....++|.  ++... .|..+.
T Consensus       161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-~~~~~~~~~~~iyv~GG~--~~~--~~~~~~~~~y~~~~~~~~W~~~~  235 (346)
T TIGR03547       161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-AGSAIVHKGNKLLLINGE--IKP--GLRTAEVKQYLFTGGKLEWNKLP  235 (346)
T ss_pred             hhHcCccceEEEEECCCCceeECccCCCCcC-CCceEEEECCEEEEEeee--eCC--CccchheEEEEecCCCceeeecC
Confidence                0025799999999999998 5664221 345677899999999986  210  122334544  44332 399988


Q ss_pred             EeecCCc------ccceEEeeCCcEEEEEcC------------------------eEEEEeCCCCcEEEEeeeCCCCCeE
Q 045675          299 NTAFERI------AWPVGSFRDSKIIMKSVD------------------------QFFLFNPKTKRNFILPIDSGMGYSY  348 (382)
Q Consensus       299 ~i~~~~~------~~~~~~~~~g~l~l~~~~------------------------~~~~yd~~t~~~~~v~~~~~~~~~~  348 (382)
                      .|+....      .....+.-++.||+....                        .+-+||+++++|+.+..........
T Consensus       236 ~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~  315 (346)
T TIGR03547       236 PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYG  315 (346)
T ss_pred             CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceee
Confidence            7764321      111122346678776541                        4679999999999986332222233


Q ss_pred             EEEEEeeceeecCCCC
Q 045675          349 KVFTYVDSIVAVNGEN  364 (382)
Q Consensus       349 ~~~~y~~SLv~~~~~~  364 (382)
                      .+......|.-+.+..
T Consensus       316 ~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       316 VSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EEEEcCCEEEEEeccC
Confidence            4445566666666544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA03098 kelch-like protein; Provisional

Probab=99.21  E-value=8.8e-10  Score=109.18  Aligned_cols=222  Identities=12%  Similarity=0.057  Sum_probs=137.5

Q ss_pred             eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCee
Q 045675          122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSC  201 (382)
Q Consensus       122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~  201 (382)
                      .+.-+|+.+++|..+++.+...           .++.....+...|++...........+..|++.+++|...+.++.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R  333 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHYVY-----------CFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR  333 (534)
T ss_pred             eeeecchhhhhcccccCccccc-----------cceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc
Confidence            4556789999999887665321           11111112233333322211112347899999999999988875444


Q ss_pred             EEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCC
Q 045675          202 VIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLS  280 (382)
Q Consensus       202 ~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~  280 (382)
                      ..   ..++.++|.+|.+++.... .....+..||+.+++|+.+ ++|..+  .....+..+|+|+++++.  .......
T Consensus       334 ~~---~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r--~~~~~~~~~~~iYv~GG~--~~~~~~~  405 (534)
T PHA03098        334 KN---PGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPR--YNPCVVNVNNLIYVIGGI--SKNDELL  405 (534)
T ss_pred             cc---ceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCC--ccceEEEECCEEEEECCc--CCCCccc
Confidence            33   5788999999999986522 1345789999999999988 566554  445667889999999885  2111112


Q ss_pred             CeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC----------eEEEEeCCCCcEEEEeeeCCCCCeEEE
Q 045675          281 NRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD----------QFFLFNPKTKRNFILPIDSGMGYSYKV  350 (382)
Q Consensus       281 ~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~----------~~~~yd~~t~~~~~v~~~~~~~~~~~~  350 (382)
                      ..+++|..+.. .|.....++...... ..+..++.||+..+.          .+.+||+++++|+.+............
T Consensus       406 ~~v~~yd~~t~-~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~  483 (534)
T PHA03098        406 KTVECFSLNTN-KWSKGSPLPISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL  483 (534)
T ss_pred             ceEEEEeCCCC-eeeecCCCCccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence            34444444332 499887665443322 233346677776642          389999999999998633222212344


Q ss_pred             EEEeeceeecCCCC
Q 045675          351 FTYVDSIVAVNGEN  364 (382)
Q Consensus       351 ~~y~~SLv~~~~~~  364 (382)
                      ..+...|.-+++..
T Consensus       484 ~~~~~~iyv~GG~~  497 (534)
T PHA03098        484 CIFNNKIYVVGGDK  497 (534)
T ss_pred             EEECCEEEEEcCCc
Confidence            55555666555443

>PLN02193 nitrile-specifier protein

Probab=99.15  E-value=5e-09  Score=101.65  Aligned_cols=217  Identities=9%  Similarity=0.010  Sum_probs=130.2

Q ss_pred             ccCceEEEeeCCC-----CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCE
Q 045675          106 SCNGLLCLDVSSA-----FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAI  180 (382)
Q Consensus       106 s~~Gll~~~~~~~-----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~  180 (382)
                      ..++.|.+..+..     ....++++||.+.+|..+|+....+..  ..  ..+.+...  .+...|++... .......
T Consensus       173 ~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~--~~--~~~~~v~~--~~~lYvfGG~~-~~~~~nd  245 (470)
T PLN02193        173 QVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHL--SC--LGVRMVSI--GSTLYVFGGRD-ASRQYNG  245 (470)
T ss_pred             EECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCC--cc--cceEEEEE--CCEEEEECCCC-CCCCCcc
Confidence            3455565544421     024589999999999988754211110  00  01111111  12233333222 1123358


Q ss_pred             EEEEECCCCCeeeecCC---CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCC--CCe
Q 045675          181 AEVYSTSTGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPT--DCY  255 (382)
Q Consensus       181 ~~vyss~t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~--~~~  255 (382)
                      +++|++.+++|+.++.+   +.++..   +.++.+++++|.+++..... ....+.+||+.+++|+.++.|....  ...
T Consensus       246 v~~yD~~t~~W~~l~~~~~~P~~R~~---h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~  321 (470)
T PLN02193        246 FYSFDTTTNEWKLLTPVEEGPTPRSF---HSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG  321 (470)
T ss_pred             EEEEECCCCEEEEcCcCCCCCCCccc---eEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence            99999999999998766   333433   57788999999998864321 2356889999999999886543211  134


Q ss_pred             eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEe---ecCCcccceEEeeCCcEEEEEcC--------
Q 045675          256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNT---AFERIAWPVGSFRDSKIIMKSVD--------  323 (382)
Q Consensus       256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~~--------  323 (382)
                      ..++..+|+|+++...  ..    ...-.+|.++-.. .|+++..+   |.........+ -++.|++....        
T Consensus       322 ~~~~~~~gkiyviGG~--~g----~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~  394 (470)
T PLN02193        322 AGLEVVQGKVWVVYGF--NG----CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAH  394 (470)
T ss_pred             cEEEEECCcEEEEECC--CC----CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccc
Confidence            5567789999999886  21    1123456665443 49998765   22222222333 35567665541        


Q ss_pred             --------eEEEEeCCCCcEEEEee
Q 045675          324 --------QFFLFNPKTKRNFILPI  340 (382)
Q Consensus       324 --------~~~~yd~~t~~~~~v~~  340 (382)
                              .+++||+.+++|+++..
T Consensus       395 ~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        395 VGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             cCccceeccEEEEEcCcCEEEEccc
Confidence                    48999999999999863

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.15  E-value=1.8e-08  Score=93.24  Aligned_cols=220  Identities=9%  Similarity=0.029  Sum_probs=128.8

Q ss_pred             eEEEE-ccccc-ceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCe----eeec
Q 045675          122 AFVLW-NPATN-EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKW----KEVA  195 (382)
Q Consensus       122 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W----~~~~  195 (382)
                      .++++ +|..+ +|..++++|.....       ..+..+   .+...|++... .......++.|+..++.|    +..+
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-------~~~~~~---~~~lyviGG~~-~~~~~~~v~~~d~~~~~w~~~~~~~~  108 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAY-------GASVSV---ENGIYYIGGSN-SSERFSSVYRITLDESKEELICETIG  108 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccc-------eEEEEE---CCEEEEEcCCC-CCCCceeEEEEEEcCCceeeeeeEcC
Confidence            45655 45433 79998877754311       111111   23333333322 122235889999999988    5555


Q ss_pred             CCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeC-CCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675          196 AGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA-MPELPTDCYVKALSYDQSLALAVYPGLG  274 (382)
Q Consensus       196 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~~~l~~~~g~L~~~~~~~~~  274 (382)
                      .++.++..   +.++.++|++|.+++..... ....+.+||+.+++|+.++ +|.... .....+..+++|++++..  .
T Consensus       109 ~lp~~~~~---~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r-~~~~~~~~~~~iYv~GG~--~  181 (323)
T TIGR03548       109 NLPFTFEN---GSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPR-VQPVCVKLQNELYVFGGG--S  181 (323)
T ss_pred             CCCcCccC---ceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCC-CcceEEEECCEEEEEcCC--C
Confidence            55444333   57788999999998853211 2457999999999999984 664322 344557889999999986  2


Q ss_pred             ccCCCCCeEEEEEECCCC-CeeEEEEeecCCc-----ccceEEeeCCcEEEEEc--------------------------
Q 045675          275 FRSRLSNRFELWVMNEGK-GWTRTFNTAFERI-----AWPVGSFRDSKIIMKSV--------------------------  322 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~-----~~~~~~~~~g~l~l~~~--------------------------  322 (382)
                          ......+|..+-.. .|+++..++....     .....+..++.||+...                          
T Consensus       182 ----~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (323)
T TIGR03548       182 ----NIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK  257 (323)
T ss_pred             ----CccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence                12223455665432 3998765532111     11112233456666543                          


Q ss_pred             -------------CeEEEEeCCCCcEEEEeeeC-CCCCeEEEEEEeeceeecCCC
Q 045675          323 -------------DQFFLFNPKTKRNFILPIDS-GMGYSYKVFTYVDSIVAVNGE  363 (382)
Q Consensus       323 -------------~~~~~yd~~t~~~~~v~~~~-~~~~~~~~~~y~~SLv~~~~~  363 (382)
                                   +.+.+||+++++|+.+.-.. .......+......|.-+.+.
T Consensus       258 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       258 EYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             HHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence                         25899999999999986321 111123445555566655543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.14  E-value=1.3e-08  Score=96.03  Aligned_cols=242  Identities=10%  Similarity=-0.006  Sum_probs=141.1

Q ss_pred             eeccCceEEEeeCCCCceeEEEEccc--ccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-----C
Q 045675          104 VGSCNGLLCLDVSSAFGMAFVLWNPA--TNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-----R  176 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~  176 (382)
                      .+..++-|.+..+.. ...++++++.  +++|..+|+++.....         +++.....+...|++......     .
T Consensus        34 ~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~---------~~~~v~~~~~IYV~GG~~~~~~~~~~~  103 (376)
T PRK14131         34 GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPRE---------QAVAAFIDGKLYVFGGIGKTNSEGSPQ  103 (376)
T ss_pred             EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcc---------cceEEEECCEEEEEcCCCCCCCCCcee
Confidence            455677776654432 3356777764  5789999877632111         111111124444444432100     0


Q ss_pred             CCCEEEEEECCCCCeeeecCC-CCeeEEeCCcceEE-ECceEEEEeeccccc----------------------------
Q 045675          177 YDAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVA-VKGVLHWIANGIGVL----------------------------  226 (382)
Q Consensus       177 ~~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~-~~G~lywl~~~~~~~----------------------------  226 (382)
                      ....+++|+..+++|+.++.. +....  + +.++. .+|++|.+++.....                            
T Consensus       104 ~~~~v~~YD~~~n~W~~~~~~~p~~~~--~-~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~  180 (376)
T PRK14131        104 VFDDVYKYDPKTNSWQKLDTRSPVGLA--G-HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK  180 (376)
T ss_pred             EcccEEEEeCCCCEEEeCCCCCCCccc--c-eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence            124799999999999998753 22221  2 34444 799999998864210                            


Q ss_pred             -----ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE--CCCC-CeeEE
Q 045675          227 -----VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM--NEGK-GWTRT  297 (382)
Q Consensus       227 -----~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l--~~~~-~W~~~  297 (382)
                           .....+.+||+.+++|+.+ ++|.... ....++..+++|++++.....    .....++|.+  +... .|+++
T Consensus       181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~-~~~a~v~~~~~iYv~GG~~~~----~~~~~~~~~~~~~~~~~~W~~~  255 (376)
T PRK14131        181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT-AGSAVVIKGNKLWLINGEIKP----GLRTDAVKQGKFTGNNLKWQKL  255 (376)
T ss_pred             ChhhcCcCceEEEEECCCCeeeECCcCCCCCC-CcceEEEECCEEEEEeeeECC----CcCChhheEEEecCCCcceeec
Confidence                 0124799999999999998 5664221 345667789999999986111    1334556544  3332 39998


Q ss_pred             EEeecCCc-------ccceEEeeCCcEEEEEcC------------------------eEEEEeCCCCcEEEEeeeCCCCC
Q 045675          298 FNTAFERI-------AWPVGSFRDSKIIMKSVD------------------------QFFLFNPKTKRNFILPIDSGMGY  346 (382)
Q Consensus       298 ~~i~~~~~-------~~~~~~~~~g~l~l~~~~------------------------~~~~yd~~t~~~~~v~~~~~~~~  346 (382)
                      ..|+....       ....++.-++.||+....                        .+-+||+++++|+.+........
T Consensus       256 ~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~  335 (376)
T PRK14131        256 PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA  335 (376)
T ss_pred             CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence            87754321       111123345667766531                        24579999999998863322221


Q ss_pred             eEEEEEEeeceeecCCC
Q 045675          347 SYKVFTYVDSIVAVNGE  363 (382)
Q Consensus       347 ~~~~~~y~~SLv~~~~~  363 (382)
                      ...+......|+-+.+.
T Consensus       336 ~~~av~~~~~iyv~GG~  352 (376)
T PRK14131        336 YGVSVSWNNGVLLIGGE  352 (376)
T ss_pred             ceEEEEeCCEEEEEcCC
Confidence            34455566666666654

>PHA02790 Kelch-like protein; Provisional

Probab=99.12  E-value=6e-09  Score=101.38  Aligned_cols=170  Identities=7%  Similarity=-0.000  Sum_probs=121.3

Q ss_pred             CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCee
Q 045675          178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYV  256 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~  256 (382)
                      ...++.|++.+++|..++.++.++..   ..++.++|.+|.+++...    ...+..||+.+++|..+ ++|..+  ...
T Consensus       286 ~~~v~~Ydp~~~~W~~~~~m~~~r~~---~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~~~~l~~~r--~~~  356 (480)
T PHA02790        286 HNNAIAVNYISNNWIPIPPMNSPRLY---ASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVNMPSLLKPR--CNP  356 (480)
T ss_pred             CCeEEEEECCCCEEEECCCCCchhhc---ceEEEECCEEEEECCcCC----CCceEEEECCCCeEEECCCCCCCC--ccc
Confidence            35789999999999999988654433   467889999999998642    24689999999999988 666555  456


Q ss_pred             eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcCeEEEEeCCCCcEE
Q 045675          257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNF  336 (382)
Q Consensus       257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~~~~~yd~~t~~~~  336 (382)
                      ..++++|+|+++++.  ..   ....++.|..+.+ .|+.+..++........+ .-+|.||+..+ .+.+||+++++|+
T Consensus       357 ~~~~~~g~IYviGG~--~~---~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG-~~e~ydp~~~~W~  428 (480)
T PHA02790        357 AVASINNVIYVIGGH--SE---TDTTTEYLLPNHD-QWQFGPSTYYPHYKSCAL-VFGRRLFLVGR-NAEFYCESSNTWT  428 (480)
T ss_pred             EEEEECCEEEEecCc--CC---CCccEEEEeCCCC-EEEeCCCCCCccccceEE-EECCEEEEECC-ceEEecCCCCcEe
Confidence            778999999999986  31   2345677755443 599987776544333233 34666776654 5678999999999


Q ss_pred             EEeeeCCCCCeEEEEEEeeceeecCCCC
Q 045675          337 ILPIDSGMGYSYKVFTYVDSIVAVNGEN  364 (382)
Q Consensus       337 ~v~~~~~~~~~~~~~~y~~SLv~~~~~~  364 (382)
                      .+...........+..+...|.-+++.+
T Consensus       429 ~~~~m~~~r~~~~~~v~~~~IYviGG~~  456 (480)
T PHA02790        429 LIDDPIYPRDNPELIIVDNKLLLIGGFY  456 (480)
T ss_pred             EcCCCCCCccccEEEEECCEEEEECCcC
Confidence            9864333222456667777777776654

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.97  E-value=4.5e-10  Score=71.99  Aligned_cols=43  Identities=21%  Similarity=0.420  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHH
Q 045675            9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTA   51 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~   51 (382)
                      |..||+|++.+||+.|+++++.++++|||+|+.++.++.+-+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~   43 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR   43 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence            5789999999999999999999999999999999988765544

>PLN02153 epithiospecifier protein

Probab=98.96  E-value=9.9e-08  Score=89.02  Aligned_cols=189  Identities=12%  Similarity=0.019  Sum_probs=110.5

Q ss_pred             eeccCceEEEeeCCC---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC----
Q 045675          104 VGSCNGLLCLDVSSA---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR----  176 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~----  176 (382)
                      ..++++.|.+..+..   ....++++||.|++|..+++++..... ...  ..+....  ..+...|++.......    
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p-~~R--~~~~~~~--~~~~iyv~GG~~~~~~~~~~  155 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP-EAR--TFHSMAS--DENHVYVFGGVSKGGLMKTP  155 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC-CCc--eeeEEEE--ECCEEEEECCccCCCccCCC
Confidence            455677776665531   134689999999999998865211000 000  1111111  1233444444321110    


Q ss_pred             -CCCEEEEEECCCCCeeeecCCC-CeeEEeCCcceEEECceEEEEeecccc-------cccccEEEEEECCCceeeEeC-
Q 045675          177 -YDAIAEVYSTSTGKWKEVAAGT-GSCVIYGGQDAVAVKGVLHWIANGIGV-------LVNEKFVVSYDMNLELFWRTA-  246 (382)
Q Consensus       177 -~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~-------~~~~~~i~~fD~~~~~~~~i~-  246 (382)
                       ....+++|+..+++|+.++.+. .+... ..+..+.++|++|.+.+....       ......+.+||+.+++|+.+. 
T Consensus       156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~  234 (341)
T PLN02153        156 ERFRTIEAYNIADGKWVQLPDPGENFEKR-GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET  234 (341)
T ss_pred             cccceEEEEECCCCeEeeCCCCCCCCCCC-CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence             1247899999999999987652 11222 224677899999998764210       011246999999999999884 


Q ss_pred             ---CCCCCCCCeeeEEEeCCeEEEEEecCCCc--cC-CC-CCeEEEEEECCCCC-eeEEEEe
Q 045675          247 ---MPELPTDCYVKALSYDQSLALAVYPGLGF--RS-RL-SNRFELWVMNEGKG-WTRTFNT  300 (382)
Q Consensus       247 ---~P~~~~~~~~~l~~~~g~L~~~~~~~~~~--~~-~~-~~~~~iW~l~~~~~-W~~~~~i  300 (382)
                         +|..+  .....+..+++|++++......  +. .. ...-++|.++-... |+++...
T Consensus       235 ~g~~P~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~  294 (341)
T PLN02153        235 TGAKPSAR--SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC  294 (341)
T ss_pred             cCCCCCCc--ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence               35444  3456678899999999961000  00 00 11227888886534 9988643

>PLN02193 nitrile-specifier protein

Probab=98.94  E-value=2.4e-07  Score=90.01  Aligned_cols=175  Identities=12%  Similarity=0.037  Sum_probs=107.2

Q ss_pred             CEEEEEECCCCCeeeecCC--CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CC---CCCCC
Q 045675          179 AIAEVYSTSTGKWKEVAAG--TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AM---PELPT  252 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~--~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~---P~~~~  252 (382)
                      ..+++|+..+++|...+..  .+.... ..+.++.++++||.+++..... ....+.+||+.+++|+.+ ++   |..+ 
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~-~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R-  269 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSC-LGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPR-  269 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcc-cceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCc-
Confidence            4699999999999987654  121111 1246788999999998864321 235789999999999998 33   3333 


Q ss_pred             CCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEe---ecCCcccceEEeeCCcEEEEEc------
Q 045675          253 DCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNT---AFERIAWPVGSFRDSKIIMKSV------  322 (382)
Q Consensus       253 ~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~------  322 (382)
                       ....++..+++|++++..  .. .....  .+|.++-.. .|..+...   +...-...+.+. ++.|++...      
T Consensus       270 -~~h~~~~~~~~iYv~GG~--~~-~~~~~--~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~  342 (470)
T PLN02193        270 -SFHSMAADEENVYVFGGV--SA-TARLK--TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEV  342 (470)
T ss_pred             -cceEEEEECCEEEEECCC--CC-CCCcc--eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCcc
Confidence             345567789999999886  21 11123  344554332 49876432   111112223333 567776654      


Q ss_pred             CeEEEEeCCCCcEEEEeee---CCCCCeEEEEEEeeceeecCCC
Q 045675          323 DQFFLFNPKTKRNFILPID---SGMGYSYKVFTYVDSIVAVNGE  363 (382)
Q Consensus       323 ~~~~~yd~~t~~~~~v~~~---~~~~~~~~~~~y~~SLv~~~~~  363 (382)
                      +.+.+||+++++|+++...   +.......+..+...|.-+.+.
T Consensus       343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~  386 (470)
T PLN02193        343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGE  386 (470)
T ss_pred             CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence            2799999999999998643   1111124444555555555543

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.83  E-value=8.4e-07  Score=83.84  Aligned_cols=152  Identities=15%  Similarity=0.096  Sum_probs=96.6

Q ss_pred             CEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeeccccc--ccccEEEEEECCCceeeEe-CCCCCCCC-
Q 045675          179 AIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVL--VNEKFVVSYDMNLELFWRT-AMPELPTD-  253 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~--~~~~~i~~fD~~~~~~~~i-~~P~~~~~-  253 (382)
                      ..+++|+..++.|+..+.++. .+..   +..+.+++++|.+++.....  ........||+.+.+|+.+ .+|..... 
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~---~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~  265 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAG---SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS  265 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCc---ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence            479999999999999887643 3322   47788899999999853211  1223455678899999988 56654321 


Q ss_pred             -----CeeeEEEeCCeEEEEEecCCCccC----------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEe
Q 045675          254 -----CYVKALSYDQSLALAVYPGLGFRS----------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSF  312 (382)
Q Consensus       254 -----~~~~l~~~~g~L~~~~~~~~~~~~----------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~  312 (382)
                           .....++.+|+|++++..  ....                .....++++..+.. .|+.+..+|...... .++.
T Consensus       266 ~~~~~~~~~a~~~~~~iyv~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-~W~~~~~lp~~r~~~-~av~  341 (376)
T PRK14131        266 SQEGVAGAFAGYSNGVLLVAGGA--NFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG-KWQKVGELPQGLAYG-VSVS  341 (376)
T ss_pred             cCCccceEeceeECCEEEEeecc--CCCCChhhhhcCCcccccCCcceeehheEEecCC-cccccCcCCCCccce-EEEE
Confidence                 112246789999999986  2100                00013455665543 599887776533222 3343


Q ss_pred             eCCcEEEEEcC--------eEEEEeCCCCcEEE
Q 045675          313 RDSKIIMKSVD--------QFFLFNPKTKRNFI  337 (382)
Q Consensus       313 ~~g~l~l~~~~--------~~~~yd~~t~~~~~  337 (382)
                      -++.||+....        .+..|+++++++..
T Consensus       342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            45678777642        68888888776653

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.82  E-value=1.6e-09  Score=69.84  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHH
Q 045675            9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAH   52 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~   52 (382)
                      +..||+|++.+||.+|+++++.++++|||+|+.++.++.+...+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            46799999999999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.78  E-value=9.4e-07  Score=82.67  Aligned_cols=137  Identities=13%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             CEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeecccccccccEEEE--EECCCceeeEe-CCCCCCCC-
Q 045675          179 AIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVS--YDMNLELFWRT-AMPELPTD-  253 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~--fD~~~~~~~~i-~~P~~~~~-  253 (382)
                      ..+++|++.+++|+.++.++. .+..   +.++.++|++|.+++..........+..  +|+.+++|+.+ ++|..+.. 
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~  244 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAG---SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS  244 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCC---ceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc
Confidence            579999999999999988753 2322   4677899999999886421111123434  45577799988 56553211 


Q ss_pred             ----CeeeEEEeCCeEEEEEecCCCccC----------------CCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee
Q 045675          254 ----CYVKALSYDQSLALAVYPGLGFRS----------------RLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR  313 (382)
Q Consensus       254 ----~~~~l~~~~g~L~~~~~~~~~~~~----------------~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~  313 (382)
                          .....++++|+|++++..  ....                .....+++|..+.. .|+.+..||...... ..+.-
T Consensus       245 ~~~~~~~~a~~~~~~Iyv~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-~W~~~~~lp~~~~~~-~~~~~  320 (346)
T TIGR03547       245 QEGLAGAFAGISNGVLLVAGGA--NFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG-KWSKVGKLPQGLAYG-VSVSW  320 (346)
T ss_pred             cccccEEeeeEECCEEEEeecC--CCCCchhhhhcCCccccCCCCceeEeeEEEecCC-cccccCCCCCCceee-EEEEc
Confidence                123366889999999986  2100                00125778887754 699998776533222 22333


Q ss_pred             CCcEEEEEc
Q 045675          314 DSKIIMKSV  322 (382)
Q Consensus       314 ~g~l~l~~~  322 (382)
                      ++.|++...
T Consensus       321 ~~~iyv~GG  329 (346)
T TIGR03547       321 NNGVLLIGG  329 (346)
T ss_pred             CCEEEEEec
Confidence            566777665

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.77  E-value=4.4e-09  Score=65.27  Aligned_cols=39  Identities=38%  Similarity=0.663  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 045675           12 VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVT   50 (382)
Q Consensus        12 LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~   50 (382)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999988754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.73  E-value=1.7e-06  Score=80.08  Aligned_cols=151  Identities=10%  Similarity=-0.087  Sum_probs=92.2

Q ss_pred             eccCceEEEeeCCC---CceeEEEEcccccce----eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCC
Q 045675          105 GSCNGLLCLDVSSA---FGMAFVLWNPATNEF----KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARY  177 (382)
Q Consensus       105 ~s~~Gll~~~~~~~---~~~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~  177 (382)
                      ++.++-|.+..+..   ....++.+|+.+++|    ..+|++|.....      .. +..+   .+...|++... ....
T Consensus        69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~------~~-~~~~---~~~iYv~GG~~-~~~~  137 (323)
T TIGR03548        69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN------GS-ACYK---DGTLYVGGGNR-NGKP  137 (323)
T ss_pred             EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC------ce-EEEE---CCEEEEEeCcC-CCcc
Confidence            34466665554421   135788899999987    678877654321      11 1111   12333333321 1123


Q ss_pred             CCEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC-CCC---CC
Q 045675          178 DAIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM-PEL---PT  252 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~~---~~  252 (382)
                      ...+++|++.+++|..++.++. .+..   +.++.++|++|.+++.....  ...+.+||+.+++|+.+.. +..   ..
T Consensus       138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~---~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~  212 (323)
T TIGR03548       138 SNKSYLFNLETQEWFELPDFPGEPRVQ---PVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPIS  212 (323)
T ss_pred             CceEEEEcCCCCCeeECCCCCCCCCCc---ceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCcee
Confidence            4589999999999999887642 3322   46678999999998764221  2347899999999998843 211   10


Q ss_pred             C-CeeeEEEeCCeEEEEEec
Q 045675          253 D-CYVKALSYDQSLALAVYP  271 (382)
Q Consensus       253 ~-~~~~l~~~~g~L~~~~~~  271 (382)
                      . ....++..+++|++++..
T Consensus       213 ~~~~~~~~~~~~~iyv~GG~  232 (323)
T TIGR03548       213 LLGAASIKINESLLLCIGGF  232 (323)
T ss_pred             ccceeEEEECCCEEEEECCc
Confidence            0 223345568999999886

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.41  E-value=1.1e-05  Score=69.11  Aligned_cols=221  Identities=12%  Similarity=0.096  Sum_probs=133.1

Q ss_pred             ceeEEEEcccccceec------cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec-CCCCCEEEEEECCCCCee
Q 045675          120 GMAFVLWNPATNEFKG------LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ-ARYDAIAEVYSTSTGKWK  192 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~------LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~-~~~~~~~~vyss~t~~W~  192 (382)
                      ...++-++|-|.+|+.      +|+....+.        ++-+|     +...|++.+..+ ......+++++..|..||
T Consensus       104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs--------AcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr  170 (392)
T KOG4693|consen  104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHS--------ACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWR  170 (392)
T ss_pred             cceeeeeccccccccccceeeecCCccCCce--------eeEEC-----cEEEEecChHHHHHhhhccceeEeccceeee
Confidence            4457888999999986      444444321        11222     344555544322 224568999999999999


Q ss_pred             eecCC-CCeeEEeCCcceEEECceEEEEeeccccc--------ccccEEEEEECCCceeeEeC----CCCCCCCCeeeEE
Q 045675          193 EVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVL--------VNEKFVVSYDMNLELFWRTA----MPELPTDCYVKAL  259 (382)
Q Consensus       193 ~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~~~~~i~~fD~~~~~~~~i~----~P~~~~~~~~~l~  259 (382)
                      .+... .+++.. .-+.++.++|.+|-.+++....        ..-..|++||+.|+.|...+    .|..+  ......
T Consensus       171 ~~~Tkg~PprwR-DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR--RSHS~f  247 (392)
T KOG4693|consen  171 EMHTKGDPPRWR-DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR--RSHSTF  247 (392)
T ss_pred             ehhccCCCchhh-hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc--cccceE
Confidence            98766 222222 3378889999999999876532        23458999999999998762    23322  455667


Q ss_pred             EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEee-cCC-cccceEEeeCCcEEEEEcCeEEEEeCC-----
Q 045675          260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTA-FER-IAWPVGSFRDSKIIMKSVDQFFLFNPK-----  331 (382)
Q Consensus       260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~-~~~-~~~~~~~~~~g~l~l~~~~~~~~yd~~-----  331 (382)
                      +++|++++++..  .. .-...--++|.++.... |.+...-. .+. -.+..++.-++++++.....-....+-     
T Consensus       248 vYng~~Y~FGGY--ng-~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP~~~~~~Spt~~  324 (392)
T KOG4693|consen  248 VYNGKMYMFGGY--NG-TLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSPLPCHPLSPTNY  324 (392)
T ss_pred             EEcceEEEeccc--ch-hhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCCCCCCCCCcccc
Confidence            899999999987  31 11123347899887644 98765331 111 145566666777887776522111111     


Q ss_pred             CCcEEEEeeeCCCCCeEEEEEEeeceeecC
Q 045675          332 TKRNFILPIDSGMGYSYKVFTYVDSIVAVN  361 (382)
Q Consensus       332 t~~~~~v~~~~~~~~~~~~~~y~~SLv~~~  361 (382)
                      ++......+-.  .+-..+.-|.|||-.+.
T Consensus       325 ~G~~~~~~LiD--~SDLHvLDF~PsLKTLa  352 (392)
T KOG4693|consen  325 NGMISPSGLID--LSDLHVLDFAPSLKTLA  352 (392)
T ss_pred             CCCCCcccccc--cccceeeecChhHHHHH
Confidence            11111111111  12367788888886654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.41  E-value=5.9e-06  Score=70.84  Aligned_cols=211  Identities=12%  Similarity=0.089  Sum_probs=126.8

Q ss_pred             ceeEEEEcccccceeccCCCCCccc-c--ccceeEEEEEEEeeCCCCCeEEEEEEe----ecCC-----CCCEEEEEECC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTES-R--LKTFWMVSLGFGFNQDTNDYVLVRIVN----FQAR-----YDAIAEVYSTS  187 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~-~--~~~~~~~~~~~g~d~~~~~ykvv~~~~----~~~~-----~~~~~~vyss~  187 (382)
                      +..+.+.|..+-+|..+|+--.... .  ..-..+.++|         ..||.+-+    ++.+     .-..+..|+++
T Consensus        43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG---------HtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~  113 (392)
T KOG4693|consen   43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG---------HTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE  113 (392)
T ss_pred             cceeEEeeccceeEEecCcccccccccCCCCccchhhcC---------ceEEEEcceEEEEcCccCcccccceeeeeccc
Confidence            5678999999999999998422110 0  0000001111         22332211    1111     12378889999


Q ss_pred             CCCeeeecCC---CCeeEEeCCcceEEECceEEEEeecccc-cccccEEEEEECCCceeeEeC---CCCCCCCCeeeEEE
Q 045675          188 TGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIGV-LVNEKFVVSYDMNLELFWRTA---MPELPTDCYVKALS  260 (382)
Q Consensus       188 t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~~~~i~~fD~~~~~~~~i~---~P~~~~~~~~~l~~  260 (382)
                      ++.|.+.+..   |+.+   .++.+++++..+|-.++.... ..+..-+-+||+.|.+|+.+.   .|+.-. ......+
T Consensus       114 t~~W~~p~v~G~vPgaR---DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR-DFH~a~~  189 (392)
T KOG4693|consen  114 TNVWKKPEVEGFVPGAR---DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR-DFHTASV  189 (392)
T ss_pred             cccccccceeeecCCcc---CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh-hhhhhhh
Confidence            9999986554   3333   347899999999999886532 234457889999999999983   344432 2344567


Q ss_pred             eCCeEEEEEecCCCccC----CCCCeEEEEEECCCCC-eeEEEEeecCCc--ccceEEeeCCcEEEEEcC---------e
Q 045675          261 YDQSLALAVYPGLGFRS----RLSNRFELWVMNEGKG-WTRTFNTAFERI--AWPVGSFRDSKIIMKSVD---------Q  324 (382)
Q Consensus       261 ~~g~L~~~~~~~~~~~~----~~~~~~~iW~l~~~~~-W~~~~~i~~~~~--~~~~~~~~~g~l~l~~~~---------~  324 (382)
                      ++|..++++...+..+.    .+.-.-+|-.++-..+ |.+...-.+...  ..-..+..+|++++....         .
T Consensus       190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~Hfnd  269 (392)
T KOG4693|consen  190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFND  269 (392)
T ss_pred             ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcc
Confidence            78999999887322111    0111223444443323 887643222111  222334458888876652         7


Q ss_pred             EEEEeCCCCcEEEEeeeCC
Q 045675          325 FFLFNPKTKRNFILPIDSG  343 (382)
Q Consensus       325 ~~~yd~~t~~~~~v~~~~~  343 (382)
                      ++.||++|..|..|...+.
T Consensus       270 Ly~FdP~t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  270 LYCFDPKTSMWSVISVRGK  288 (392)
T ss_pred             eeecccccchheeeeccCC
Confidence            9999999999999987643

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.18  E-value=0.00016  Score=65.93  Aligned_cols=211  Identities=13%  Similarity=0.151  Sum_probs=126.0

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec--CCC-----C-CEEEEEECCCCCe
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ--ARY-----D-AIAEVYSTSTGKW  191 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~--~~~-----~-~~~~vyss~t~~W  191 (382)
                      ...+|++|--+.+|+.+-.+..++.+      ..+.....++.    ++.+++..  +..     + ..+.+|++.+++|
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pR------sshq~va~~s~----~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw  166 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPR------SSHQAVAVPSN----ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW  166 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCC------ccceeEEeccC----eEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence            34689999999999986433332222      12223333433    22222211  111     1 2788999999999


Q ss_pred             eeecCCCCeeEEeCCcceEEECceEEEEeeccccc---ccccEEEEEECCCceeeEeCCCCCCC--CCeeeEEEe-CCeE
Q 045675          192 KEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVL---VNEKFVVSYDMNLELFWRTAMPELPT--DCYVKALSY-DQSL  265 (382)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~---~~~~~i~~fD~~~~~~~~i~~P~~~~--~~~~~l~~~-~g~L  265 (382)
                      ..+...-.+... .+++.|.....|.-.++-....   ..-.-+.+||+.+=+|+.+..+....  .+.+.+.+. +|.+
T Consensus       167 eql~~~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i  245 (521)
T KOG1230|consen  167 EQLEFGGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGI  245 (521)
T ss_pred             eeeccCCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence            998776222222 2256776666655555422211   12346899999999999995543211  144555555 8999


Q ss_pred             EEEEecCCCc----cCCCCCeEEEEEECCCCC------eeEEEEeecC---CcccceEEeeCCc-EEEEE--c-------
Q 045675          266 ALAVYPGLGF----RSRLSNRFELWVMNEGKG------WTRTFNTAFE---RIAWPVGSFRDSK-IIMKS--V-------  322 (382)
Q Consensus       266 ~~~~~~~~~~----~~~~~~~~~iW~l~~~~~------W~~~~~i~~~---~~~~~~~~~~~g~-l~l~~--~-------  322 (382)
                      +|.++..+..    .+.....-..|.|+...+      |.++..+.+.   ...-.+++++++. ++|..  +       
T Consensus       246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs  325 (521)
T KOG1230|consen  246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES  325 (521)
T ss_pred             EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence            9988863311    122345668899975432      8888766432   2244566777766 44432  1       


Q ss_pred             ------CeEEEEeCCCCcEEEEeee
Q 045675          323 ------DQFFLFNPKTKRNFILPID  341 (382)
Q Consensus       323 ------~~~~~yd~~t~~~~~v~~~  341 (382)
                            +.++.||+..++|....+.
T Consensus       326 l~g~F~NDLy~fdlt~nrW~~~qlq  350 (521)
T KOG1230|consen  326 LSGEFFNDLYFFDLTRNRWSEGQLQ  350 (521)
T ss_pred             hhhhhhhhhhheecccchhhHhhhc
Confidence                  1699999999999987655

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.64  E-value=0.0029  Score=61.70  Aligned_cols=201  Identities=9%  Similarity=-0.035  Sum_probs=122.7

Q ss_pred             eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeec-CCCCCEEEEEECCCCCeeeecCC---
Q 045675          122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQ-ARYDAIAEVYSTSTGKWKEVAAG---  197 (382)
Q Consensus       122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~-~~~~~~~~vyss~t~~W~~~~~~---  197 (382)
                      .++++|--+..|.........+..  .........+      ++-++...... ......+..|+..|++|+.....   
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~--r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~  160 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSP--RYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP  160 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCc--ccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC
Confidence            599999999888876543332211  0000111111      22222222211 22335899999999999987666   


Q ss_pred             CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCC----CCCCCCCeeeEEEeCCeEEEEEecCC
Q 045675          198 TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM----PELPTDCYVKALSYDQSLALAVYPGL  273 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~----P~~~~~~~~~l~~~~g~L~~~~~~~~  273 (382)
                      |+.+..   +.++..+-++|..++.+........+.+||+.+.+|..+..    |..+  ....+++.+++++++...  
T Consensus       161 P~~r~~---Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR--~gH~~~~~~~~~~v~gG~--  233 (482)
T KOG0379|consen  161 PPPRAG---HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPR--YGHAMVVVGNKLLVFGGG--  233 (482)
T ss_pred             CCCccc---ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCC--CCceEEEECCeEEEEecc--
Confidence            233332   67888888888888876544456789999999999999843    3322  456778889999999987  


Q ss_pred             CccCCCCCeEEEEEECCCCC-eeEEEEe---ecCCcccceEEeeCCcEEEEEcC---------eEEEEeCCCCcEEEEee
Q 045675          274 GFRSRLSNRFELWVMNEGKG-WTRTFNT---AFERIAWPVGSFRDSKIIMKSVD---------QFFLFNPKTKRNFILPI  340 (382)
Q Consensus       274 ~~~~~~~~~~~iW~l~~~~~-W~~~~~i---~~~~~~~~~~~~~~g~l~l~~~~---------~~~~yd~~t~~~~~v~~  340 (382)
                      ..  .....=.+|.++-... |.++...   +-........+. +..+++....         .++.||++++.|.++..
T Consensus       234 ~~--~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  234 DD--GDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES  310 (482)
T ss_pred             cc--CCceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeec
Confidence            21  1233447788776533 8855433   222223334433 2234444322         57899999999999853

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.60  E-value=0.0016  Score=58.20  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             CCCCC----HHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHH
Q 045675            9 VSSVP----LVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAH   52 (382)
Q Consensus         9 ~~~LP----~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~   52 (382)
                      +..||    +++.+.||+.|...+|..|..|||+|+.+++++-.-+.-
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL  122 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL  122 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence            35689    999999999999999999999999999999998776653

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.54  E-value=0.0026  Score=62.01  Aligned_cols=167  Identities=12%  Similarity=-0.024  Sum_probs=104.4

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC-CCCEEEEEECCCCCeeeecCC-C
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR-YDAIAEVYSTSTGKWKEVAAG-T  198 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~vyss~t~~W~~~~~~-~  198 (382)
                      ..+..+|+.|++|..+.+....+..   .  ..+.+...   +++-+|........ ....++||+..+.+|.++... +
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~---r--~~Hs~~~~---g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~  210 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPP---R--AGHSATVV---GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE  210 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCC---c--ccceEEEE---CCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence            4789999999999998654431111   0  11111111   13333333322122 456999999999999998776 3


Q ss_pred             CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe----CCCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPELPTDCYVKALSYDQSLALAVYPGLG  274 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~~~~~~~l~~~~g~L~~~~~~~~~  274 (382)
                      .+.+. ..+..+.+++.++.+.+.........-+..||+.+.+|..+    ..|..+  ....++..+..+.+++..  .
T Consensus       211 ~P~pR-~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~--~  285 (482)
T KOG0379|consen  211 APSPR-YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGG--T  285 (482)
T ss_pred             CCCCC-CCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCC--c
Confidence            33333 33678888888888777663333556899999999999844    233333  456666777888888887  3


Q ss_pred             ccCCCCCeEEEEEECCCCC-eeEEEEee
Q 045675          275 FRSRLSNRFELWVMNEGKG-WTRTFNTA  301 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~~-W~~~~~i~  301 (382)
                      .. ....--++|.++..+. |..+..+.
T Consensus       286 ~~-~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  286 DP-KQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cc-ccccccccccccccccceeeeeccc
Confidence            10 0014567888876545 98886554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=7.3e-05  Score=65.73  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=39.3

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 045675            5 DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF   48 (382)
Q Consensus         5 ~~~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F   48 (382)
                      ..-.|..|||||+..||+.|+.|+|.++..|||+|+++.++...
T Consensus        94 pgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen   94 PGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             CCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            34568899999999999999999999999999999999876554

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.29  E-value=0.049  Score=50.29  Aligned_cols=146  Identities=15%  Similarity=0.161  Sum_probs=92.2

Q ss_pred             EEEEEECCCCCeeeecCC--CCeeEEeCCcceEEEC-ceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCC
Q 045675          180 IAEVYSTSTGKWKEVAAG--TGSCVIYGGQDAVAVK-GVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELP  251 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~--~~~~~~~~~~~~v~~~-G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~  251 (382)
                      .+..|+..++.|+.+..+  |+++..   +.+|.+- |.+|..++....+     ..-.-+..||+.+.+|..+.++...
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pRss---hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P  175 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPRSS---HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP  175 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCCcc---ceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence            788899999999998887  444433   4566555 7555554443221     1112477899999999999776543


Q ss_pred             CC-CeeeEEEeCCeEEEEEecCCCccCCCC-CeEEEEEEC--CCCCeeEEEEeec----CCcccceEEeeCCcEEEEEcC
Q 045675          252 TD-CYVKALSYDQSLALAVYPGLGFRSRLS-NRFELWVMN--EGKGWTRTFNTAF----ERIAWPVGSFRDSKIIMKSVD  323 (382)
Q Consensus       252 ~~-~~~~l~~~~g~L~~~~~~~~~~~~~~~-~~~~iW~l~--~~~~W~~~~~i~~----~~~~~~~~~~~~g~l~l~~~~  323 (382)
                      .. +..+++....+|.++++.  ++..... .-=.||.++  .+ .|.++.. +-    ..-...+.+...|.|++..+.
T Consensus       176 S~RSGHRMvawK~~lilFGGF--hd~nr~y~YyNDvy~FdLdty-kW~Klep-sga~PtpRSGcq~~vtpqg~i~vyGGY  251 (521)
T KOG1230|consen  176 SPRSGHRMVAWKRQLILFGGF--HDSNRDYIYYNDVYAFDLDTY-KWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVYGGY  251 (521)
T ss_pred             CCCccceeEEeeeeEEEEcce--ecCCCceEEeeeeEEEeccce-eeeeccC-CCCCCCCCCcceEEecCCCcEEEEcch
Confidence            32 667888999999999998  4211111 112455554  44 5999864 32    111333445556777776541


Q ss_pred             ----------------eEEEEeCCC
Q 045675          324 ----------------QFFLFNPKT  332 (382)
Q Consensus       324 ----------------~~~~yd~~t  332 (382)
                                      .++..++++
T Consensus       252 sK~~~kK~~dKG~~hsDmf~L~p~~  276 (521)
T KOG1230|consen  252 SKQRVKKDVDKGTRHSDMFLLKPED  276 (521)
T ss_pred             hHhhhhhhhhcCceeeeeeeecCCc
Confidence                            588889988

>PF13964 Kelch_6: Kelch motif

Probab=97.03  E-value=0.002  Score=41.45  Aligned_cols=43  Identities=21%  Similarity=0.138  Sum_probs=35.0

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCC
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPE  249 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~  249 (382)
                      +.++.++|.+|.+++..........+..||+.+++|+.+ ++|.
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            478899999999999875323457999999999999998 5554

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.58  E-value=0.0068  Score=38.24  Aligned_cols=42  Identities=24%  Similarity=0.162  Sum_probs=35.4

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCC
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMP  248 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P  248 (382)
                      ..++.++|.+|.+++..........+..||+.+++|..+ ++|
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            478899999999999876445678999999999999988 443

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=96.51  E-value=0.47  Score=41.96  Aligned_cols=122  Identities=13%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             CCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCC----------CeeeEEEeCCeEEEEEecCC
Q 045675          205 GGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTD----------CYVKALSYDQSLALAVYPGL  273 (382)
Q Consensus       205 ~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~----------~~~~l~~~~g~L~~~~~~~~  273 (382)
                      .+.+.|..||.+|......      ..|+.||+.++... ...+|.....          ..+.+++.+..|.++...  
T Consensus        70 ~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat--  141 (250)
T PF02191_consen   70 QGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT--  141 (250)
T ss_pred             ccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec--
Confidence            3358899999999987643      58999999999998 7788865431          467789999999999887  


Q ss_pred             CccCCCCCeEEEEEECCCC-C----eeEEEEeecCCcccceEEeeCCcEEEEEcC------eEEEEeCCCCcEEEEeee
Q 045675          274 GFRSRLSNRFELWVMNEGK-G----WTRTFNTAFERIAWPVGSFRDSKIIMKSVD------QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       274 ~~~~~~~~~~~iW~l~~~~-~----W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~------~~~~yd~~t~~~~~v~~~  341 (382)
                      ..   ....+.|=.|+..+ .    |.-.+  +-.. ..-.+ .-+|.|+.....      -.++||..+++-+.+.+.
T Consensus       142 ~~---~~g~ivvskld~~tL~v~~tw~T~~--~k~~-~~naF-mvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~  213 (250)
T PF02191_consen  142 ED---NNGNIVVSKLDPETLSVEQTWNTSY--PKRS-AGNAF-MVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP  213 (250)
T ss_pred             CC---CCCcEEEEeeCcccCceEEEEEecc--Cchh-hccee-eEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence            31   23468888888652 1    65321  2112 22222 236766665543      357999999988887665

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.45  E-value=0.0019  Score=57.16  Aligned_cols=46  Identities=13%  Similarity=0.188  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHhcCCh-----hhhhhhhccchhhHhhcCCHHHHHHHHc
Q 045675            9 VSSVPLVIITDILLQLPI-----KSIVRFKCVSKSWLLLIKSSEFVTAHLN   54 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~-----~sl~r~r~VcK~W~~li~sp~F~~~~~~   54 (382)
                      +..|||||+.+||.+.=.     .++.++.+|||.|+-...+|.|-+....
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            467999999999987654     8999999999999999999999876544

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.76  E-value=0.17  Score=45.98  Aligned_cols=178  Identities=14%  Similarity=0.202  Sum_probs=112.6

Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECc-eEEEEeeccccc--------------------------------
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKG-VLHWIANGIGVL--------------------------------  226 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~~~--------------------------------  226 (382)
                      .++.|++.+++|...+...+.... + +.++.+++ .+|+.++-....                                
T Consensus       114 d~Y~y~p~~nsW~kl~t~sP~gl~-G-~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d  191 (381)
T COG3055         114 DAYRYDPSTNSWHKLDTRSPTGLV-G-ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED  191 (381)
T ss_pred             eeEEecCCCChhheeccccccccc-c-ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence            789999999999998887333322 3 46666666 888887654310                                


Q ss_pred             -ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE--CCCC-CeeEEEEee
Q 045675          227 -VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM--NEGK-GWTRTFNTA  301 (382)
Q Consensus       227 -~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l--~~~~-~W~~~~~i~  301 (382)
                       .....+++||+.+++|+.. ..|.... .-..++..+++|.++....+.    ...+-++|+.  .... .|.++...|
T Consensus       192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~-aGsa~~~~~n~~~lInGEiKp----GLRt~~~k~~~~~~~~~~w~~l~~lp  266 (381)
T COG3055         192 YFFNKEVLSYDPSTNQWRNLGENPFYGN-AGSAVVIKGNKLTLINGEIKP----GLRTAEVKQADFGGDNLKWLKLSDLP  266 (381)
T ss_pred             hcccccccccccccchhhhcCcCcccCc-cCcceeecCCeEEEEcceecC----CccccceeEEEeccCceeeeeccCCC
Confidence             2445799999999999998 5776543 234455567789999887433    3445555554  3331 299986654


Q ss_pred             cCC---cccceEEe---eCCcEEEEEc--------------------------CeEEEEeCCCCcEEEEe-eeCCCCCeE
Q 045675          302 FER---IAWPVGSF---RDSKIIMKSV--------------------------DQFFLFNPKTKRNFILP-IDSGMGYSY  348 (382)
Q Consensus       302 ~~~---~~~~~~~~---~~g~l~l~~~--------------------------~~~~~yd~~t~~~~~v~-~~~~~~~~~  348 (382)
                      ...   .....+..   .++++++...                          +.|+.+|  .+.|+.+. ++.+.. .-
T Consensus       267 ~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~-YG  343 (381)
T COG3055         267 APIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA-YG  343 (381)
T ss_pred             CCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc-ce
Confidence            321   12222222   1233333321                          1577777  88999996 444444 46


Q ss_pred             EEEEEeeceeecCCCCchH
Q 045675          349 KVFTYVDSIVAVNGENDEK  367 (382)
Q Consensus       349 ~~~~y~~SLv~~~~~~~~~  367 (382)
                      -...|-+.+..+.+.....
T Consensus       344 ~s~~~nn~vl~IGGE~~~G  362 (381)
T COG3055         344 VSLSYNNKVLLIGGETSGG  362 (381)
T ss_pred             EEEecCCcEEEEccccCCC
Confidence            6778888998888766553

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=95.72  E-value=0.033  Score=35.47  Aligned_cols=41  Identities=12%  Similarity=0.017  Sum_probs=33.3

Q ss_pred             cceEEECceEEEEeec--ccccccccEEEEEECCCceeeEeCC
Q 045675          207 QDAVAVKGVLHWIANG--IGVLVNEKFVVSYDMNLELFWRTAM  247 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~--~~~~~~~~~i~~fD~~~~~~~~i~~  247 (382)
                      +.++.++|+||.+++.  .........+..||+++++|+.+..
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            5788999999999998  2233456689999999999998843

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00284 OLF Olfactomedin-like domains

Probab=95.69  E-value=1.3  Score=39.01  Aligned_cols=120  Identities=12%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCC-C---------CCeeeEEEeCCeEEEEEecCCCc
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELP-T---------DCYVKALSYDQSLALAVYPGLGF  275 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~-~---------~~~~~l~~~~g~L~~~~~~~~~~  275 (382)
                      ...|+.||.+|......      ..|+.||+.+++.... .+|... .         ...+.+++.+..|.++-..  ..
T Consensus        77 tG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat--~~  148 (255)
T smart00284       77 TGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYAT--EQ  148 (255)
T ss_pred             ccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEec--cC
Confidence            58999999999965443      5899999999998643 577432 1         1568899999999999876  21


Q ss_pred             cCCCCCeEEEEEECCCC-C----eeEEEEeecCCcccceEEeeCCcEEEEEc----C--eEEEEeCCCCcEEEEeee
Q 045675          276 RSRLSNRFELWVMNEGK-G----WTRTFNTAFERIAWPVGSFRDSKIIMKSV----D--QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       276 ~~~~~~~~~iW~l~~~~-~----W~~~~~i~~~~~~~~~~~~~~g~l~l~~~----~--~~~~yd~~t~~~~~v~~~  341 (382)
                         ....|.|=+|+... .    |.--+  +-.. ....++ -+|.|+....    +  -.++||..|++-+.+.+.
T Consensus       149 ---~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s-a~naFm-vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~  218 (255)
T smart00284      149 ---NAGKIVISKLNPATLTIENTWITTY--NKRS-ASNAFM-ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP  218 (255)
T ss_pred             ---CCCCEEEEeeCcccceEEEEEEcCC--Cccc-ccccEE-EeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence               34678888888652 1    55422  2122 222233 3577776653    1  477999999987777665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.49  E-value=1.6  Score=38.36  Aligned_cols=202  Identities=18%  Similarity=0.071  Sum_probs=109.8

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      ...+|-|+..+..  ...++.++|.+++...+..+.            ..|+.++...+.+. ++..       ....++
T Consensus         8 d~~~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~-v~~~-------~~~~~~   65 (246)
T PF08450_consen    8 DPRDGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLY-VADS-------GGIAVV   65 (246)
T ss_dssp             ETTTTEEEEEETT--TTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEEE-EEET-------TCEEEE
T ss_pred             ECCCCEEEEEEcC--CCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEEE-EEEc-------CceEEE
Confidence            3446777666654  568999999999876544333            12556663333332 2221       245677


Q ss_pred             ECCCCCeeeecCCC-C--eeEEeCCcceEEECceEEEEeecccccccc--cEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          185 STSTGKWKEVAAGT-G--SCVIYGGQDAVAVKGVLHWIANGIGVLVNE--KFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       185 ss~t~~W~~~~~~~-~--~~~~~~~~~~v~~~G~lywl~~~~~~~~~~--~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      +..++.++.....+ .  .... ...-++--+|.+|.-..........  ..|..+|.. .+.+.+.-...   ..-.++
T Consensus        66 d~~~g~~~~~~~~~~~~~~~~~-~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~  140 (246)
T PF08450_consen   66 DPDTGKVTVLADLPDGGVPFNR-PNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIA  140 (246)
T ss_dssp             ETTTTEEEEEEEEETTCSCTEE-EEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEE
T ss_pred             ecCCCcEEEEeeccCCCcccCC-CceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceE
Confidence            88898887765541 1  1111 1123445578977766544322122  589999999 55554421111   111233


Q ss_pred             -EeCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe-ecCCc---ccceEEeeCCcEEEEEc--CeEEEEeC
Q 045675          260 -SYDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT-AFERI---AWPVGSFRDSKIIMKSV--DQFFLFNP  330 (382)
Q Consensus       260 -~~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i-~~~~~---~~~~~~~~~g~l~l~~~--~~~~~yd~  330 (382)
                       .-+|+ |++....        ...+..+.++...+ +.....+ ++...   ..-+++..+|.|++...  +++..||+
T Consensus       141 ~s~dg~~lyv~ds~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  141 FSPDGKTLYVADSF--------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EETTSSEEEEEETT--------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             ECCcchheeecccc--------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence             34565 6655544        44544444544323 5443333 43332   33456666788888764  39999999


Q ss_pred             CCCcEEEEeee
Q 045675          331 KTKRNFILPID  341 (382)
Q Consensus       331 ~t~~~~~v~~~  341 (382)
                      +.+....+.++
T Consensus       213 ~G~~~~~i~~p  223 (246)
T PF08450_consen  213 DGKLLREIELP  223 (246)
T ss_dssp             TSCEEEEEE-S
T ss_pred             CccEEEEEcCC
Confidence            97778878776

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=94.80  E-value=0.27  Score=38.78  Aligned_cols=75  Identities=9%  Similarity=0.139  Sum_probs=53.2

Q ss_pred             EEEEEECCCc--eeeEeCCCCCCCC------------CeeeEEEeCCeEEEEEecCCCccC--CCCCeEEEEEECCC---
Q 045675          231 FVVSYDMNLE--LFWRTAMPELPTD------------CYVKALSYDQSLALAVYPGLGFRS--RLSNRFELWVMNEG---  291 (382)
Q Consensus       231 ~i~~fD~~~~--~~~~i~~P~~~~~------------~~~~l~~~~g~L~~~~~~~~~~~~--~~~~~~~iW~l~~~---  291 (382)
                      .|+.+|+..+  .++.+++|.....            ..-.+++.+|+|-++.........  .....+.+|+|...   
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            6889999765  6778888876431            233467789999999987221111  24668999999883   


Q ss_pred             CC-eeEEEEeecCCc
Q 045675          292 KG-WTRTFNTAFERI  305 (382)
Q Consensus       292 ~~-W~~~~~i~~~~~  305 (382)
                      .. |.+.++++...+
T Consensus        87 ~~~W~~d~~v~~~di  101 (131)
T PF07762_consen   87 SWEWKKDCEVDLSDI  101 (131)
T ss_pred             CCCEEEeEEEEhhhc
Confidence            22 999999987665

>PF13964 Kelch_6: Kelch motif

Probab=94.60  E-value=0.08  Score=33.79  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             eccCceEEEeeCCC----CceeEEEEcccccceeccCCCCC
Q 045675          105 GSCNGLLCLDVSSA----FGMAFVLWNPATNEFKGLPTPSL  141 (382)
Q Consensus       105 ~s~~Gll~~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~  141 (382)
                      .+.+|-|.+..+..    ....+.++||.|++|..+|+++.
T Consensus         8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            45566766655432    15689999999999999998875

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.56  E-value=1.1  Score=42.74  Aligned_cols=162  Identities=13%  Similarity=0.153  Sum_probs=82.1

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC--CeeeecCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG--KWKEVAAG  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~--~W~~~~~~  197 (382)
                      .+.+.|+|-+|+||.. |...-....      -+.++||-..+.+..|++.+-.-.  ...=+.|.+...  .|+++...
T Consensus        56 iDELHvYNTatnqWf~-PavrGDiPp------gcAA~GfvcdGtrilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~  126 (830)
T KOG4152|consen   56 IDELHVYNTATNQWFA-PAVRGDIPP------GCAAFGFVCDGTRILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPK  126 (830)
T ss_pred             hhhhhhhccccceeec-chhcCCCCC------chhhcceEecCceEEEEccEeeec--cccchHHHhhhhhhhHhhcCCC
Confidence            5678999999999985 221111100      122444444444444444443211  223345555544  56665433


Q ss_pred             -----CCeeEEeCCcceEEECceEEEEeeccccc--------c--cccEEEEEECCCce--eeEe----CCCCCCCCCee
Q 045675          198 -----TGSCVIYGGQDAVAVKGVLHWIANGIGVL--------V--NEKFVVSYDMNLEL--FWRT----AMPELPTDCYV  256 (382)
Q Consensus       198 -----~~~~~~~~~~~~v~~~G~lywl~~~~~~~--------~--~~~~i~~fD~~~~~--~~~i----~~P~~~~~~~~  256 (382)
                           +++++.++ +.-...+.++|.+++-..++        .  .+.+|+-+-..+..  |...    .+|..+. ++.
T Consensus       127 ~p~nG~pPCPRlG-HSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRE-SHT  204 (830)
T KOG4152|consen  127 TPKNGPPPCPRLG-HSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRE-SHT  204 (830)
T ss_pred             CCCCCCCCCCccC-ceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcc-cce
Confidence                 34666644 46667778999988765443        1  22344444444432  3321    3444432 222


Q ss_pred             eE--EEeCC---eEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEE
Q 045675          257 KA--LSYDQ---SLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTF  298 (382)
Q Consensus       257 ~l--~~~~g---~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~  298 (382)
                      .+  .+.|.   ++++++..  .    .-.--++|.|+-+.- |.+-.
T Consensus       205 AViY~eKDs~~skmvvyGGM--~----G~RLgDLW~Ldl~Tl~W~kp~  246 (830)
T KOG4152|consen  205 AVIYTEKDSKKSKMVVYGGM--S----GCRLGDLWTLDLDTLTWNKPS  246 (830)
T ss_pred             eEEEEeccCCcceEEEEccc--c----cccccceeEEecceeeccccc
Confidence            22  23333   45555554  2    234458999987522 88753

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.35  E-value=0.99  Score=39.62  Aligned_cols=163  Identities=15%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             EEEEEECCCCCeeeecCC-CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCC----ceeeEeC--CCCCCC
Q 045675          180 IAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL----ELFWRTA--MPELPT  252 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~----~~~~~i~--~P~~~~  252 (382)
                      ...+|++.+++++..... ...+..    .++.-||.+.-.++...   ....+-.|++.+    ..|.+..  |-..+ 
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSg----g~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R-  118 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSG----GAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGR-  118 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccC----cCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCC-
Confidence            466788888888876654 222221    44556787776665542   235677788765    5566542  22222 


Q ss_pred             CCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCC-CC---eeEEEEee---cCCcccceEEeeCCcEEEEEcCe
Q 045675          253 DCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEG-KG---WTRTFNTA---FERIAWPVGSFRDSKIIMKSVDQ  324 (382)
Q Consensus       253 ~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~-~~---W~~~~~i~---~~~~~~~~~~~~~g~l~l~~~~~  324 (382)
                       +......+ ||++.++++.  .     ....+.|=-... .+   |.......   ...++--+.+..+|+||+....+
T Consensus       119 -WYpT~~~L~DG~vlIvGG~--~-----~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~  190 (243)
T PF07250_consen  119 -WYPTATTLPDGRVLIVGGS--N-----NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG  190 (243)
T ss_pred             -ccccceECCCCCEEEEeCc--C-----CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence             44444544 8999999987  2     555666544221 12   32222111   11235556677899999999988


Q ss_pred             EEEEeCCCCcE-EEEe-eeCCCCCeEEEEEEeeceeecCC
Q 045675          325 FFLFNPKTKRN-FILP-IDSGMGYSYKVFTYVDSIVAVNG  362 (382)
Q Consensus       325 ~~~yd~~t~~~-~~v~-~~~~~~~~~~~~~y~~SLv~~~~  362 (382)
                      -.+||.+++++ +.+. ++++    .+.++...|-|-++-
T Consensus       191 s~i~d~~~n~v~~~lP~lPg~----~R~YP~sgssvmLPl  226 (243)
T PF07250_consen  191 SIIYDYKTNTVVRTLPDLPGG----PRNYPASGSSVMLPL  226 (243)
T ss_pred             cEEEeCCCCeEEeeCCCCCCC----ceecCCCcceEEecC
Confidence            88899999976 5554 4332    456777776554443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.32  E-value=1.7  Score=40.99  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             CCEEEEEECCCCCeeeecCC-CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCC-
Q 045675          178 DAIAEVYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDC-  254 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~-  254 (382)
                      +..+.+|......=..+.++ ...++. . ....+-+|. .-+.+++.      .++.+||+.+.+...+..|...... 
T Consensus       234 d~~lrifqvDGk~N~~lqS~~l~~fPi-~-~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~  305 (514)
T KOG2055|consen  234 DGTLRIFQVDGKVNPKLQSIHLEKFPI-Q-KAEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKS  305 (514)
T ss_pred             CCcEEEEEecCccChhheeeeeccCcc-c-eeeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccch
Confidence            34788887765443344444 333333 2 144455776 55554443      6999999999999999888776532 


Q ss_pred             --eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE-cC-eEEEEeC
Q 045675          255 --YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS-VD-QFFLFNP  330 (382)
Q Consensus       255 --~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~  330 (382)
                        .+.+.- ++...++.+.        ...|.+-..+.. .|...+.|  .....-+.+..+|+.++.. .+ .|+++|+
T Consensus       306 ~e~FeVSh-d~~fia~~G~--------~G~I~lLhakT~-eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl  373 (514)
T KOG2055|consen  306 MERFEVSH-DSNFIAIAGN--------NGHIHLLHAKTK-ELITSFKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNL  373 (514)
T ss_pred             hheeEecC-CCCeEEEccc--------CceEEeehhhhh-hhhheeee--ccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence              222222 3443333332        334444333333 25544444  3445556666677754444 44 9999999


Q ss_pred             CCCcEEEE
Q 045675          331 KTKRNFIL  338 (382)
Q Consensus       331 ~t~~~~~v  338 (382)
                      +.+.....
T Consensus       374 ~~~~~~~r  381 (514)
T KOG2055|consen  374 RQNSCLHR  381 (514)
T ss_pred             CCcceEEE
Confidence            99965544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.30  E-value=5.2  Score=38.28  Aligned_cols=144  Identities=13%  Similarity=0.124  Sum_probs=81.7

Q ss_pred             CEEEEEECCCC-----CeeeecCC-CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCce---eeEeCCCC
Q 045675          179 AIAEVYSTSTG-----KWKEVAAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL---FWRTAMPE  249 (382)
Q Consensus       179 ~~~~vyss~t~-----~W~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~---~~~i~~P~  249 (382)
                      ..+.+.+...+     .|+.+... .....     ..-+.++.+|.++..+.   ....|++.|+.+..   |..+-.|.
T Consensus       252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~-----~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~  323 (414)
T PF02897_consen  252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEY-----YVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPE  323 (414)
T ss_dssp             EEEEEEECCCTTTSS-SEEEEEESSSS-EE-----EEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred             CeEEEEeccccCCCcCCcEEEeCCCCceEE-----EEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCC
Confidence            45555565553     56665443 22111     23345888998887542   24699999998765   66443333


Q ss_pred             CCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEe--e-CCcEEEEEcC---
Q 045675          250 LPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSF--R-DSKIIMKSVD---  323 (382)
Q Consensus       250 ~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~--~-~g~l~l~~~~---  323 (382)
                      ........+...++.|.+....  .    ....+.++.++.  +|.. ..+++.......++.  . ..++++...+   
T Consensus       324 ~~~~~l~~~~~~~~~Lvl~~~~--~----~~~~l~v~~~~~--~~~~-~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~  394 (414)
T PF02897_consen  324 DEDVSLEDVSLFKDYLVLSYRE--N----GSSRLRVYDLDD--GKES-REIPLPEAGSVSGVSGDFDSDELRFSYSSFTT  394 (414)
T ss_dssp             SSSEEEEEEEEETTEEEEEEEE--T----TEEEEEEEETT---TEEE-EEEESSSSSEEEEEES-TT-SEEEEEEEETTE
T ss_pred             CCceeEEEEEEECCEEEEEEEE--C----CccEEEEEECCC--CcEE-eeecCCcceEEeccCCCCCCCEEEEEEeCCCC
Confidence            2211233445568888887776  3    466777777772  3443 345444433223332  2 2346666654   


Q ss_pred             --eEEEEeCCCCcEEEEe
Q 045675          324 --QFFLFNPKTKRNFILP  339 (382)
Q Consensus       324 --~~~~yd~~t~~~~~v~  339 (382)
                        .++.||+++++.+.+.
T Consensus       395 P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  395 PPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             EEEEEEEETTTTCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEE
Confidence              8999999999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=94.30  E-value=0.097  Score=33.18  Aligned_cols=39  Identities=10%  Similarity=0.051  Sum_probs=24.9

Q ss_pred             cceEEE-CceEEEEeecccccccccEEEEEECCCceeeEe
Q 045675          207 QDAVAV-KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT  245 (382)
Q Consensus       207 ~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i  245 (382)
                      +.++.+ ++.+|..++.........-+..||+.+++|+.+
T Consensus         5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            466767 589999988765423445788999999999998

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.86  E-value=4  Score=35.36  Aligned_cols=188  Identities=11%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST  186 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss  186 (382)
                      -+|.|++...   ...++.+|+.|++.+.--..+.....  .           +...+=+|+....     ...+..++.
T Consensus        35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~~~~~~~--~-----------~~~~~~~v~v~~~-----~~~l~~~d~   93 (238)
T PF13360_consen   35 DGGRVYVASG---DGNLYALDAKTGKVLWRFDLPGPISG--A-----------PVVDGGRVYVGTS-----DGSLYALDA   93 (238)
T ss_dssp             ETTEEEEEET---TSEEEEEETTTSEEEEEEECSSCGGS--G-----------EEEETTEEEEEET-----TSEEEEEET
T ss_pred             eCCEEEEEcC---CCEEEEEECCCCCEEEEeeccccccc--e-----------eeecccccccccc-----eeeeEeccc
Confidence            5788877755   56899999999985542222211100  0           0001112222211     126777776


Q ss_pred             CCC--Cee-eecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee--eE-eCCCCCCC------CC
Q 045675          187 STG--KWK-EVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF--WR-TAMPELPT------DC  254 (382)
Q Consensus       187 ~t~--~W~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~--~~-i~~P~~~~------~~  254 (382)
                      .++  .|+ .....+..... ........++.+|.....+       .|.++|+.+.+-  .. +..|....      +.
T Consensus        94 ~tG~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~  165 (238)
T PF13360_consen   94 KTGKVLWSIYLTSSPPAGVR-SSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI  165 (238)
T ss_dssp             TTSCEEEEEEE-SSCTCSTB---SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred             CCcceeeeeccccccccccc-cccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence            666  798 44332211111 1123334466676665444       899999987544  33 23333211      01


Q ss_pred             eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCC
Q 045675          255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKT  332 (382)
Q Consensus       255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t  332 (382)
                      ...+...+|.+++....        ...+.+ .+...+. |+..  +  .. ........++.|++...+ .++++|++|
T Consensus       166 ~~~~~~~~~~v~~~~~~--------g~~~~~-d~~tg~~~w~~~--~--~~-~~~~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  166 NGSPVISDGRVYVSSGD--------GRVVAV-DLATGEKLWSKP--I--SG-IYSLPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EEEEECCTTEEEEECCT--------SSEEEE-ETTTTEEEEEEC--S--S--ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred             ccceEEECCEEEEEcCC--------CeEEEE-ECCCCCEEEEec--C--CC-ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence            23344456766665544        223443 4444421 6322  2  12 111123334446666644 999999999


Q ss_pred             CcEEE
Q 045675          333 KRNFI  337 (382)
Q Consensus       333 ~~~~~  337 (382)
                      ++..+
T Consensus       232 G~~~W  236 (238)
T PF13360_consen  232 GKVVW  236 (238)
T ss_dssp             TEEEE
T ss_pred             CCEEe
Confidence            98654

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.73  E-value=1.1  Score=41.11  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=73.5

Q ss_pred             ceEEE--CceEEEEeecccccccccEEEEEECCCceeeEe---CCCCCC---CC---CeeeEEE---eCCeEEEEEecCC
Q 045675          208 DAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT---AMPELP---TD---CYVKALS---YDQSLALAVYPGL  273 (382)
Q Consensus       208 ~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~~P~~~---~~---~~~~l~~---~~g~L~~~~~~~~  273 (382)
                      .+++.  +|.+||++..+       .|...|++.+.-...   .+-...   .+   .-..+..   -.|+|++..+.+ 
T Consensus       188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g-  259 (342)
T PF06433_consen  188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG-  259 (342)
T ss_dssp             --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred             ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC-
Confidence            44444  36799988776       899999988765443   111111   01   1122222   367899877653 


Q ss_pred             CccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEE-c-C-eEEEEeCCCCcEEEE
Q 045675          274 GFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKS-V-D-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       274 ~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~-~-~-~~~~yd~~t~~~~~v  338 (382)
                      ..+++....=+||+++-..+ .++.+|+++.-...+.+..+.+ +++.. . + .+++||..|++..+.
T Consensus       260 ~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  260 GEGSHKDPGTEVWVYDLKTH-KRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             -TT-TTS-EEEEEEEETTTT-EEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             CCCCccCCceEEEEEECCCC-eEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence            33456778899999987645 6778888765556788887766 55543 3 3 799999999975543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=93.22  E-value=8  Score=36.89  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             cEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc
Q 045675          230 KFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP  308 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~  308 (382)
                      ..+..||..+.+-..+.-+...   ...+.+. +|+-.++.          ...+++|+.+-..|=.++..-+-..+..-
T Consensus       382 D~l~iyd~~~~e~kr~e~~lg~---I~av~vs~dGK~~vva----------Ndr~el~vididngnv~~idkS~~~lItd  448 (668)
T COG4946         382 DKLGIYDKDGGEVKRIEKDLGN---IEAVKVSPDGKKVVVA----------NDRFELWVIDIDNGNVRLIDKSEYGLITD  448 (668)
T ss_pred             ceEEEEecCCceEEEeeCCccc---eEEEEEcCCCcEEEEE----------cCceEEEEEEecCCCeeEecccccceeEE
Confidence            4899999999998888766542   3344443 66644433          34678999875434111111111223444


Q ss_pred             eEEeeCCc-EEEEEcC-----eEEEEeCCCCcEEEEe
Q 045675          309 VGSFRDSK-IIMKSVD-----QFFLFNPKTKRNFILP  339 (382)
Q Consensus       309 ~~~~~~g~-l~l~~~~-----~~~~yd~~t~~~~~v~  339 (382)
                      +..+++++ +-.....     .+-.||+.+++.-.+.
T Consensus       449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            44555555 3233322     5677777777766663

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.96  E-value=7.8  Score=36.09  Aligned_cols=166  Identities=14%  Similarity=0.054  Sum_probs=89.5

Q ss_pred             EEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC--eeeecCC---CCeeEEeCCcceEEECc-eEEEEeecccc
Q 045675          152 VSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK--WKEVAAG---TGSCVIYGGQDAVAVKG-VLHWIANGIGV  225 (382)
Q Consensus       152 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~--W~~~~~~---~~~~~~~~~~~~v~~~G-~lywl~~~~~~  225 (382)
                      ..+.+.++|..+...|.-+      ....+.+|+...+.  .......   ....+.   +-...-+| .+|.+....  
T Consensus       145 h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~s--  213 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNELS--  213 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETTT--
T ss_pred             cceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCCC--
Confidence            3456777886544433322      22478888887665  5432211   222222   22333366 466655443  


Q ss_pred             cccccEEEEEECC--CceeeEe----CCCCCCCC--CeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-ee
Q 045675          226 LVNEKFVVSYDMN--LELFWRT----AMPELPTD--CYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WT  295 (382)
Q Consensus       226 ~~~~~~i~~fD~~--~~~~~~i----~~P~~~~~--~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~  295 (382)
                          ..|.+|+..  +..++.+    .+|.....  ....+... +|+..++...       ....+.++.++...| -.
T Consensus       214 ----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-------~~~sI~vf~~d~~~g~l~  282 (345)
T PF10282_consen  214 ----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-------GSNSISVFDLDPATGTLT  282 (345)
T ss_dssp             ----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-------TTTEEEEEEECTTTTTEE
T ss_pred             ----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-------cCCEEEEEEEecCCCceE
Confidence                356666665  6666654    34543322  23444443 6765444443       388999999976545 56


Q ss_pred             EEEEeecCC-cccceEEeeCCc-EEEEEcC--eEE--EEeCCCCcEEEEe
Q 045675          296 RTFNTAFER-IAWPVGSFRDSK-IIMKSVD--QFF--LFNPKTKRNFILP  339 (382)
Q Consensus       296 ~~~~i~~~~-~~~~~~~~~~g~-l~l~~~~--~~~--~yd~~t~~~~~v~  339 (382)
                      .+..++... .-+-+.+..+|+ |++...+  .+.  ..|.++++++.+.
T Consensus       283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  283 LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence            566666533 244566667888 4555544  444  4577899988875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.94  E-value=11  Score=37.55  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHH
Q 045675            7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTA   51 (382)
Q Consensus         7 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~   51 (382)
                      .-+..||.++...||..|+.+++.++++||+.|+.++.+......
T Consensus       106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~  150 (537)
T KOG0274|consen  106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR  150 (537)
T ss_pred             chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence            456789999999999999999999999999999999987776553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.94  E-value=7.3  Score=35.66  Aligned_cols=116  Identities=11%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             CceEEEEeecccccccccEEEEEECCCceeeEe---CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEEC
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT---AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN  289 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~  289 (382)
                      +|..-|...-+     ...|..||+........   .+++.. +.+.-+..-+|+++.+...  .     ..++.+|..+
T Consensus       155 ~~~~l~v~DLG-----~Dri~~y~~~dg~L~~~~~~~v~~G~-GPRHi~FHpn~k~aY~v~E--L-----~stV~v~~y~  221 (346)
T COG2706         155 DGRYLVVPDLG-----TDRIFLYDLDDGKLTPADPAEVKPGA-GPRHIVFHPNGKYAYLVNE--L-----NSTVDVLEYN  221 (346)
T ss_pred             CCCEEEEeecC-----CceEEEEEcccCccccccccccCCCC-CcceEEEcCCCcEEEEEec--c-----CCEEEEEEEc
Confidence            56666766665     46888888886655543   333332 2445556778998888887  3     8899999999


Q ss_pred             CCCC-eeEEEEeec-C-Cc-----ccceEEeeCCcEEEEEcC-----eEEEEeCCCCcEEEEeee
Q 045675          290 EGKG-WTRTFNTAF-E-RI-----AWPVGSFRDSKIIMKSVD-----QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       290 ~~~~-W~~~~~i~~-~-~~-----~~~~~~~~~g~l~l~~~~-----~~~~yd~~t~~~~~v~~~  341 (382)
                      ...+ -+.+.+|+. + .+     ..-+.+..+|..+.+++.     .++..|..+++++-+..-
T Consensus       222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~  286 (346)
T COG2706         222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT  286 (346)
T ss_pred             CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence            8634 666666632 1 12     556777788985555543     677779999998888654

>smart00612 Kelch Kelch domain

Probab=92.80  E-value=0.21  Score=30.91  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=24.0

Q ss_pred             CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECc
Q 045675          179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKG  214 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G  214 (382)
                      ..+++|++.+++|+..+.++..+..   +.++.++|
T Consensus        15 ~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~~~~g   47 (47)
T smart00612       15 KSVEVYDPETNKWTPLPSMPTPRSG---HGVAVING   47 (47)
T ss_pred             eeEEEECCCCCeEccCCCCCCcccc---ceEEEeCC
Confidence            4899999999999998877554433   35555554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.12  E-value=7.3  Score=33.68  Aligned_cols=134  Identities=11%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             EEEEEECCCC--CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCee
Q 045675          180 IAEVYSTSTG--KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYV  256 (382)
Q Consensus       180 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~  256 (382)
                      .+..++..++  .|+..-........   ..++.-+|.+|.....+       .|.++|..+.+-. ...++...   ..
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~---~~   70 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPV---ATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPI---SG   70 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEE---ETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCG---GS
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCcc---ceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeeccccc---cc
Confidence            5677887766  68874321111111   12455788888875444       8999998665432 22444432   12


Q ss_pred             eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeE-EEEeecCCcccc-eEEeeCCcEEEEEcC-eEEEEeC
Q 045675          257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTR-TFNTAFERIAWP-VGSFRDSKIIMKSVD-QFFLFNP  330 (382)
Q Consensus       257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~-~~~i~~~~~~~~-~~~~~~g~l~l~~~~-~~~~yd~  330 (382)
                      .....++.+++....        .   .++.++...|   |.. ...-+......+ .....++.+++...+ .++.+|+
T Consensus        71 ~~~~~~~~v~v~~~~--------~---~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  139 (238)
T PF13360_consen   71 APVVDGGRVYVGTSD--------G---SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP  139 (238)
T ss_dssp             GEEEETTEEEEEETT--------S---EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred             eeeecccccccccce--------e---eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence            247778888777643        2   5666653324   984 433222222222 222234446666644 9999999


Q ss_pred             CCCcEEE
Q 045675          331 KTKRNFI  337 (382)
Q Consensus       331 ~t~~~~~  337 (382)
                      ++++...
T Consensus       140 ~tG~~~w  146 (238)
T PF13360_consen  140 KTGKLLW  146 (238)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            9998644

...

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=92.09  E-value=4.5  Score=35.13  Aligned_cols=137  Identities=9%  Similarity=0.127  Sum_probs=76.6

Q ss_pred             EECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCC---CCC-eeeEEEe--CC--eEEEEEecCCCccCCCCCe
Q 045675          211 AVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELP---TDC-YVKALSY--DQ--SLALAVYPGLGFRSRLSNR  282 (382)
Q Consensus       211 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~---~~~-~~~l~~~--~g--~L~~~~~~~~~~~~~~~~~  282 (382)
                      .+||-+ ++...       ..+...|+.|+++..++.|...   ... ...++-.  .+  ++..+...  . +......
T Consensus         3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~--~-~~~~~~~   71 (230)
T TIGR01640         3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDR--S-GNRNQSE   71 (230)
T ss_pred             ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEee--c-CCCCCcc
Confidence            468888 44433       2799999999999999766532   111 1223211  12  22222211  0 0112467


Q ss_pred             EEEEEECCCCCeeEEEEeecCCc-ccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEE-EeeeCCCC---CeEEE
Q 045675          283 FELWVMNEGKGWTRTFNTAFERI-AWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFI-LPIDSGMG---YSYKV  350 (382)
Q Consensus       283 ~~iW~l~~~~~W~~~~~i~~~~~-~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~-v~~~~~~~---~~~~~  350 (382)
                      ++|+.++.+ .|......+.... ... ++.-+|.|+.....       .++.||+++.+++. +..+....   .....
T Consensus        72 ~~Vys~~~~-~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L  149 (230)
T TIGR01640        72 HQVYTLGSN-SWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL  149 (230)
T ss_pred             EEEEEeCCC-CccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEE
Confidence            889999876 6998763221111 222 55557877655431       59999999999995 66543221   12345


Q ss_pred             EEEeeceeec
Q 045675          351 FTYVDSIVAV  360 (382)
Q Consensus       351 ~~y~~SLv~~  360 (382)
                      ..+...|.-+
T Consensus       150 ~~~~G~L~~v  159 (230)
T TIGR01640       150 INYKGKLAVL  159 (230)
T ss_pred             EEECCEEEEE
Confidence            5555555443

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=92.03  E-value=8.5  Score=35.87  Aligned_cols=147  Identities=10%  Similarity=0.011  Sum_probs=81.7

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCC----
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD----  178 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~----  178 (382)
                      .++..+.-|+..+.   .....|+|+.|+....+|.+......  .   ..+.+     .+.  +..+........    
T Consensus        71 F~al~gskIv~~d~---~~~t~vyDt~t~av~~~P~l~~pk~~--p---isv~V-----G~~--LY~m~~~~~~~~~~~~  135 (342)
T PF07893_consen   71 FFALHGSKIVAVDQ---SGRTLVYDTDTRAVATGPRLHSPKRC--P---ISVSV-----GDK--LYAMDRSPFPEPAGRP  135 (342)
T ss_pred             EEEecCCeEEEEcC---CCCeEEEECCCCeEeccCCCCCCCcc--e---EEEEe-----CCe--EEEeeccCccccccCc
Confidence            33444555555555   34689999999999999987653221  1   11111     222  333322111110    


Q ss_pred             --CEEEEE--E--------CCCCCeeeecCCC-CeeE------EeCCcceEEECceEEEEeecccccccccEEEEEECCC
Q 045675          179 --AIAEVY--S--------TSTGKWKEVAAGT-GSCV------IYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL  239 (382)
Q Consensus       179 --~~~~vy--s--------s~t~~W~~~~~~~-~~~~------~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~  239 (382)
                        ..+|++  .        ..+.+|+..+.+| ....      + . .-+|+ +|.--|++..+.    ...-.+||..+
T Consensus       136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i-~-sYavv-~g~~I~vS~~~~----~~GTysfDt~~  208 (342)
T PF07893_consen  136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRI-T-SYAVV-DGRTIFVSVNGR----RWGTYSFDTES  208 (342)
T ss_pred             cceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceE-E-EEEEe-cCCeEEEEecCC----ceEEEEEEcCC
Confidence              155555  2        2234788876652 1110      2 1 24556 898888876651    13689999999


Q ss_pred             ceeeEe---CCCCCCCC-----CeeeEE--EeC--CeEEEEEec
Q 045675          240 ELFWRT---AMPELPTD-----CYVKAL--SYD--QSLALAVYP  271 (382)
Q Consensus       240 ~~~~~i---~~P~~~~~-----~~~~l~--~~~--g~L~~~~~~  271 (382)
                      .+|+..   .||.....     ....++  ..+  +.||.+...
T Consensus       209 ~~W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~  252 (342)
T PF07893_consen  209 HEWRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVS  252 (342)
T ss_pred             cceeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEecc
Confidence            999987   88876541     222333  333  477776665

>smart00612 Kelch Kelch domain

Probab=91.99  E-value=0.5  Score=29.11  Aligned_cols=44  Identities=16%  Similarity=0.007  Sum_probs=26.5

Q ss_pred             EEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeC
Q 045675          216 LHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYD  262 (382)
Q Consensus       216 lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~  262 (382)
                      +|.+++... ......+..||+.+++|+.+ ++|..+  .....+.++
T Consensus         2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~   46 (47)
T smart00612        2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPR--SGHGVAVIN   46 (47)
T ss_pred             EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCcc--ccceEEEeC
Confidence            455554332 11245789999999999987 555544  334444444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.72  E-value=4  Score=36.21  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +++.-+|-|-...-.  ...+...||.++.-..+|.+......   .  .  .+..|+-.    -+.+...   ....++
T Consensus       194 i~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~g---s--R--riwsdpig----~~wittw---g~g~l~  257 (353)
T COG4257         194 ICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKAG---S--R--RIWSDPIG----RAWITTW---GTGSLH  257 (353)
T ss_pred             eEECCCCcEEEEecc--ccceEEcccccCCcceecCCCccccc---c--c--ccccCccC----cEEEecc---CCceee
Confidence            334445555443221  23456679999988888877763221   0  0  22323321    2222221   234788


Q ss_pred             EEECCCCCeeeecCC-CCeeEEeCCcceEEEC-ceEEEEeecccccccccEEEEEECCCceeeEeCCCCCC
Q 045675          183 VYSTSTGKWKEVAAG-TGSCVIYGGQDAVAVK-GVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELP  251 (382)
Q Consensus       183 vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~~-G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~  251 (382)
                      -|++.+.+|.+-..+ ....     ..+++++ --.-|+..-+     ...|..||+++++|+++++|...
T Consensus       258 rfdPs~~sW~eypLPgs~ar-----pys~rVD~~grVW~sea~-----agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         258 RFDPSVTSWIEYPLPGSKAR-----PYSMRVDRHGRVWLSEAD-----AGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             EeCcccccceeeeCCCCCCC-----cceeeeccCCcEEeeccc-----cCceeecCcccceEEEecCCCCC
Confidence            899999999876554 1111     1233343 2456775544     46999999999999999888754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.61  E-value=7.7  Score=36.15  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=69.5

Q ss_pred             CceEEEEeecccccccccEEEEEECCCce--eeE---eCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWR---TAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV  287 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~---i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~  287 (382)
                      +|...|+...+     ...|..|++..+.  ...   +.+|.... .+.....-+|+..++...       ....+.++.
T Consensus       154 dg~~v~v~dlG-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e-------~s~~v~v~~  220 (345)
T PF10282_consen  154 DGRFVYVPDLG-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNE-------LSNTVSVFD  220 (345)
T ss_dssp             TSSEEEEEETT-----TTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEET-------TTTEEEEEE
T ss_pred             CCCEEEEEecC-----CCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecC-------CCCcEEEEe
Confidence            57777777665     3578888887665  533   45665542 222223346665555554       388999999


Q ss_pred             ECCCCC-eeEEEEeecC--Cc-----ccceEEeeCCc-EEEEEcC--eEEEEeC--CCCcEEEEee
Q 045675          288 MNEGKG-WTRTFNTAFE--RI-----AWPVGSFRDSK-IIMKSVD--QFFLFNP--KTKRNFILPI  340 (382)
Q Consensus       288 l~~~~~-W~~~~~i~~~--~~-----~~~~~~~~~g~-l~l~~~~--~~~~yd~--~t~~~~~v~~  340 (382)
                      ++...+ +....+++.-  ..     ..-+.+..+|+ ||+....  .+.+|++  ++++++.+..
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence            985435 7777777532  11     33456667888 5555544  7777776  6678888753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.53  E-value=0.18  Score=47.05  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=35.0

Q ss_pred             CCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCC
Q 045675            7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKS   45 (382)
Q Consensus         7 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~s   45 (382)
                      ...-.||.|++..||+-|..+++.|++.+|+.|+-+..+
T Consensus        70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD  108 (483)
T KOG4341|consen   70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD  108 (483)
T ss_pred             cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            344579999999999999999999999999999998654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.43  E-value=12  Score=33.17  Aligned_cols=135  Identities=13%  Similarity=0.082  Sum_probs=78.9

Q ss_pred             CCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCC-ceeeEeCCCCCCCCCee
Q 045675          178 DAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL-ELFWRTAMPELPTDCYV  256 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~-~~~~~i~~P~~~~~~~~  256 (382)
                      ...+..|+..+++=......+... + + .....+++.+|-|+...      .....||..+ +.-..++.|.    .-.
T Consensus        67 ~S~l~~~d~~tg~~~~~~~l~~~~-F-g-EGit~~~d~l~qLTWk~------~~~f~yd~~tl~~~~~~~y~~----EGW  133 (264)
T PF05096_consen   67 QSSLRKVDLETGKVLQSVPLPPRY-F-G-EGITILGDKLYQLTWKE------GTGFVYDPNTLKKIGTFPYPG----EGW  133 (264)
T ss_dssp             EEEEEEEETTTSSEEEEEE-TTT----E-EEEEEETTEEEEEESSS------SEEEEEETTTTEEEEEEE-SS----S--
T ss_pred             cEEEEEEECCCCcEEEEEECCccc-c-c-eeEEEECCEEEEEEecC------CeEEEEccccceEEEEEecCC----cce
Confidence            358999999998754444443333 3 3 37778899999999987      5889999986 3334455553    345


Q ss_pred             eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc------eEEeeCCcEEEEE--cCeEEEE
Q 045675          257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP------VGSFRDSKIIMKS--VDQFFLF  328 (382)
Q Consensus       257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~------~~~~~~g~l~l~~--~~~~~~y  328 (382)
                      .|+..+..|.+-.+.         .  .++.++.. ....+.+|....-..|      +-.. +|.|+--.  .+.++..
T Consensus       134 GLt~dg~~Li~SDGS---------~--~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  134 GLTSDGKRLIMSDGS---------S--RLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEECSSCEEEE-SS---------S--EEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEcCCCEEEEECCc---------c--ceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            666556666654443         3  44455533 3455655644322222      3333 67666333  3499999


Q ss_pred             eCCCCcEEEE
Q 045675          329 NPKTKRNFIL  338 (382)
Q Consensus       329 d~~t~~~~~v  338 (382)
                      |++|+++...
T Consensus       201 dp~tG~V~~~  210 (264)
T PF05096_consen  201 DPETGKVVGW  210 (264)
T ss_dssp             ETTT-BEEEE
T ss_pred             eCCCCeEEEE
Confidence            9999997764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=89.67  E-value=1.4  Score=27.75  Aligned_cols=39  Identities=13%  Similarity=0.008  Sum_probs=26.9

Q ss_pred             CceEEEEeecc-cccccccEEEEEECCCceeeEe-CCCCCC
Q 045675          213 KGVLHWIANGI-GVLVNEKFVVSYDMNLELFWRT-AMPELP  251 (382)
Q Consensus       213 ~G~lywl~~~~-~~~~~~~~i~~fD~~~~~~~~i-~~P~~~  251 (382)
                      ++++|..++.. ........+.+||+.+.+|+.+ .+|..+
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R   41 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPR   41 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCc
Confidence            35666666655 2233456889999999999998 555544

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.33  E-value=0.32  Score=30.36  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             CCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC
Q 045675          163 NDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG  197 (382)
Q Consensus       163 ~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~  197 (382)
                      +...|++...........+++|+..+++|+..+.+
T Consensus        12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen   12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence            44555555442123446999999999999998765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]

Probab=89.22  E-value=12  Score=32.70  Aligned_cols=120  Identities=12%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCC----------CeeeEEEeCCeEEEEEecCCCc
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTD----------CYVKALSYDQSLALAVYPGLGF  275 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~----------~~~~l~~~~g~L~~~~~~~~~~  275 (382)
                      ...|+.+|.+|......      ..|+.||+.++.- ....+|.....          ....+++.+..|.++-..  .+
T Consensus        71 Tg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat--~~  142 (249)
T KOG3545|consen   71 TGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYAT--PE  142 (249)
T ss_pred             cceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecc--cc
Confidence            58899999999987543      5899999998543 33456644321          457788888889888886  31


Q ss_pred             cCCCCCeEEEEEECCC----CC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-----eE-EEEeCCCCcEEEEeee
Q 045675          276 RSRLSNRFELWVMNEG----KG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-----QF-FLFNPKTKRNFILPID  341 (382)
Q Consensus       276 ~~~~~~~~~iW~l~~~----~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-----~~-~~yd~~t~~~~~v~~~  341 (382)
                         ....+.|=.|+..    +. |.-..  +-....  -++.-+|.|+.+..-     .+ ++||..+++-+.+.++
T Consensus       143 ---~~g~iv~skLdp~tl~~e~tW~T~~--~k~~~~--~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip  212 (249)
T KOG3545|consen  143 ---NAGTIVLSKLDPETLEVERTWNTTL--PKRSAG--NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP  212 (249)
T ss_pred             ---cCCcEEeeccCHHHhheeeeecccc--CCCCcC--ceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence               3556666777763    11 64222  111111  122235666665542     33 6999999999888765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=88.95  E-value=18  Score=33.13  Aligned_cols=148  Identities=14%  Similarity=0.073  Sum_probs=86.5

Q ss_pred             CEEEEEECCCCCeeeecCC---CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEe----CCCCC
Q 045675          179 AIAEVYSTSTGKWKEVAAG---TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPEL  250 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~---~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~  250 (382)
                      .++.+|+...+.-......   +...+.   +-..+-||+ +|.++.-.    .+-.+..+|....++..+    .+|..
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPR---Hi~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~d  239 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPR---HIVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPED  239 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcc---eEEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCccc
Confidence            3888999987765544433   221111   223344664 56665544    234666677777888776    56776


Q ss_pred             CCC--CeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCc-ccceEEeeCCcEEEEE-cC-
Q 045675          251 PTD--CYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERI-AWPVGSFRDSKIIMKS-VD-  323 (382)
Q Consensus       251 ~~~--~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~-~~~~~~~~~g~l~l~~-~~-  323 (382)
                      ..+  +...+- .-+|+...+.-.       .-..|.++..++..+ =+.+...+.... -+-+-+..+|+++++. .+ 
T Consensus       240 F~g~~~~aaIhis~dGrFLYasNR-------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         240 FTGTNWAAAIHISPDGRFLYASNR-------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             cCCCCceeEEEECCCCCEEEEecC-------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            654  222332 347775544443       255777788887745 444444454443 4455666677755444 33 


Q ss_pred             ---eEEEEeCCCCcEEEEee
Q 045675          324 ---QFFLFNPKTKRNFILPI  340 (382)
Q Consensus       324 ---~~~~yd~~t~~~~~v~~  340 (382)
                         .++.-|.+|+++..+..
T Consensus       313 d~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         313 DNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             CcEEEEEEcCCCceEEeccc
Confidence               67788999999888753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=88.52  E-value=16  Score=31.93  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=68.3

Q ss_pred             ceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE--eCCeEEEEEecCCCccCCCCCeE
Q 045675          208 DAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS--YDQSLALAVYPGLGFRSRLSNRF  283 (382)
Q Consensus       208 ~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~~~~~~~  283 (382)
                      .+++.  +|.+||.....      ..|..+|+.+++...+..|..     ..++.  -+|+|++....          .+
T Consensus         4 gp~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~~~~~~~~-----~G~~~~~~~g~l~v~~~~----------~~   62 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVEVIDLPGP-----NGMAFDRPDGRLYVADSG----------GI   62 (246)
T ss_dssp             EEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEESSSE-----EEEEEECTTSEEEEEETT----------CE
T ss_pred             ceEEECCCCEEEEEEcCC------CEEEEEECCCCeEEEEecCCC-----ceEEEEccCCEEEEEEcC----------ce
Confidence            45555  69999997655      589999999999988877762     23333  47888776654          12


Q ss_pred             EEEEECCCCC-eeEEEEeecC--Cc--ccceEEeeCCcEEEEEcC----------eEEEEeCCCCcEEEE
Q 045675          284 ELWVMNEGKG-WTRTFNTAFE--RI--AWPVGSFRDSKIIMKSVD----------QFFLFNPKTKRNFIL  338 (382)
Q Consensus       284 ~iW~l~~~~~-W~~~~~i~~~--~~--~~~~~~~~~g~l~l~~~~----------~~~~yd~~t~~~~~v  338 (382)
                      .+.  +...+ ++.....+..  ..  ..-+.+..+|.|++....          +++.++.. ++.+.+
T Consensus        63 ~~~--d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~  129 (246)
T PF08450_consen   63 AVV--DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV  129 (246)
T ss_dssp             EEE--ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred             EEE--ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence            222  32223 7777776422  23  334666677888877642          48899998 665555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02772 guanylate kinase

Probab=88.47  E-value=3.5  Score=38.87  Aligned_cols=76  Identities=9%  Similarity=0.001  Sum_probs=54.9

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCceeeEe----CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCe
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNR  282 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~  282 (382)
                      +.++..+.++|.++++.........+..||..|.+|..-    ..|..+ +.+..+..-+++|.++...       ....
T Consensus        28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r-~GhSa~v~~~~rilv~~~~-------~~~~   99 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC-KGYSAVVLNKDRILVIKKG-------SAPD   99 (398)
T ss_pred             ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC-CcceEEEECCceEEEEeCC-------CCCc
Confidence            688999999999998654322345899999999999864    233333 2455555668999998876       2455


Q ss_pred             EEEEEECC
Q 045675          283 FELWVMNE  290 (382)
Q Consensus       283 ~~iW~l~~  290 (382)
                      =.||.|.-
T Consensus       100 ~~~w~l~~  107 (398)
T PLN02772        100 DSIWFLEV  107 (398)
T ss_pred             cceEEEEc
Confidence            78999864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=88.41  E-value=11  Score=35.74  Aligned_cols=107  Identities=11%  Similarity=0.113  Sum_probs=61.6

Q ss_pred             ceEEECceEEEEeecccccccccEEEEEECCCc--eeeEeCCCCCCC--------CCeeeEEEeCCeEEEEEecCCCccC
Q 045675          208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWRTAMPELPT--------DCYVKALSYDQSLALAVYPGLGFRS  277 (382)
Q Consensus       208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i~~P~~~~--------~~~~~l~~~~g~L~~~~~~~~~~~~  277 (382)
                      .++..+|.+|.....+       .+.+||..+.  .|+. .++....        ......+..+|++++....      
T Consensus        64 sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~------  129 (394)
T PRK11138         64 HPAVAYNKVYAADRAG-------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK------  129 (394)
T ss_pred             ccEEECCEEEEECCCC-------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC------
Confidence            5678899999987655       8999998754  4543 3322100        0112245667887764332      


Q ss_pred             CCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          278 RLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                         .  .+..++...|   |+...  +-.....|+.  .++.|++...+ .++.+|.++++..+
T Consensus       130 ---g--~l~ald~~tG~~~W~~~~--~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W  184 (394)
T PRK11138        130 ---G--QVYALNAEDGEVAWQTKV--AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW  184 (394)
T ss_pred             ---C--EEEEEECCCCCCcccccC--CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence               2  3444543223   87643  2111133433  24556666555 89999999998554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=87.51  E-value=28  Score=33.49  Aligned_cols=191  Identities=10%  Similarity=0.088  Sum_probs=103.1

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+++.|..|++...|-..+..          .....+.|.+ ...++....   .....+.+++..++.++.+...+.
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g~----------~~~~~~SPDG-~~la~~~~~---~g~~~Iy~~dl~~g~~~~LT~~~~  277 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQGM----------LVVSDVSKDG-SKLLLTMAP---KGQPDIYLYDTNTKTLTQITNYPG  277 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCCc----------EEeeEECCCC-CEEEEEEcc---CCCcEEEEEECCCCcEEEcccCCC
Confidence            45788899999888777543221          1122344432 333333221   234578888988888887654422


Q ss_pred             eeEEeCCcceEEECc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCe-EEEEEecCCCccC
Q 045675          200 SCVIYGGQDAVAVKG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQS-LALAVYPGLGFRS  277 (382)
Q Consensus       200 ~~~~~~~~~~v~~~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~-L~~~~~~~~~~~~  277 (382)
                      ..    ......-+| .+|+.....+    ...|...|+.+.+.+.+-.-..   .... ..-+|+ |.++...  ....
T Consensus       278 ~d----~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~---~~~~-~SPDG~~Ia~~~~~--~~~~  343 (419)
T PRK04043        278 ID----VNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK---NNSS-VSTYKNYIVYSSRE--TNNE  343 (419)
T ss_pred             cc----CccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC---cCce-ECCCCCEEEEEEcC--CCcc
Confidence            11    113334456 6888776542    3479999999888866532111   1122 223555 4444433  1000


Q ss_pred             CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675          278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~~  341 (382)
                      ......+||.++-..+ +..+..-   .......+..+|+ |++....    .+..+++..+.-.++...
T Consensus       344 ~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~  410 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLK  410 (419)
T ss_pred             cCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecC
Confidence            1113467888764323 5443321   1222234456787 5565543    688999988877777653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=87.01  E-value=28  Score=33.01  Aligned_cols=133  Identities=12%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             CEEEEEECCCC--CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc--eeeE-eCCCCCCCC
Q 045675          179 AIAEVYSTSTG--KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWR-TAMPELPTD  253 (382)
Q Consensus       179 ~~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~-i~~P~~~~~  253 (382)
                      ..+..++..++  .|+.....+..... ....++..+|.+|+....+       .+.++|..+.  .|+. +..|.....
T Consensus       170 g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        170 GMLQALNESDGAVKWTVNLDVPSLTLR-GESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             CEEEEEEccCCCEeeeecCCCCccccc-CCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccc
Confidence            36788888776  58875433221111 1135667788888866554       7999999875  4543 223322110


Q ss_pred             ------CeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-
Q 045675          254 ------CYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-  323 (382)
Q Consensus       254 ------~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-  323 (382)
                            ....-+..+|.|++....         .  .++.++-..|   |....    .....+ . ..++.||+...+ 
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~---------g--~l~ald~~tG~~~W~~~~----~~~~~~-~-~~~~~vy~~~~~g  304 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYN---------G--NLVALDLRSGQIVWKREY----GSVNDF-A-VDGGRIYLVDQND  304 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcC---------C--eEEEEECCCCCEEEeecC----CCccCc-E-EECCEEEEEcCCC
Confidence                  011223457777765543         2  2334443223   87532    111222 2 235668877766 


Q ss_pred             eEEEEeCCCCcEE
Q 045675          324 QFFLFNPKTKRNF  336 (382)
Q Consensus       324 ~~~~yd~~t~~~~  336 (382)
                      +++++|.++++..
T Consensus       305 ~l~ald~~tG~~~  317 (394)
T PRK11138        305 RVYALDTRGGVEL  317 (394)
T ss_pred             eEEEEECCCCcEE
Confidence            9999999998643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=86.63  E-value=22  Score=31.48  Aligned_cols=176  Identities=15%  Similarity=0.091  Sum_probs=84.4

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeee-ecCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKE-VAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~  198 (382)
                      ...+.+||+.|++....-.....          ..++.+++..+ +-++.. .    ....+.+|+..++.... .....
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~~~----------~~~l~~~~dg~-~l~~~~-~----~~~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVGQR----------PRGITLSKDGK-LLYVCA-S----DSDTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             CCEEEEEECCCCceEEEEECCCC----------CCceEECCCCC-EEEEEE-C----CCCeEEEEECCCCcEEEeccCCC
Confidence            45788899988764432111110          11355666543 221221 1    23478889888776533 21111


Q ss_pred             CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCcc
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFR  276 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~  276 (382)
                      ..  .   ...+.-+|...++....     ...|..+|+.+.+- ..++.+...    ..+. .-+|.+.++...     
T Consensus        74 ~~--~---~~~~~~~g~~l~~~~~~-----~~~l~~~d~~~~~~~~~~~~~~~~----~~~~~~~dg~~l~~~~~-----  134 (300)
T TIGR03866        74 DP--E---LFALHPNGKILYIANED-----DNLVTVIDIETRKVLAEIPVGVEP----EGMAVSPDGKIVVNTSE-----  134 (300)
T ss_pred             Cc--c---EEEECCCCCEEEEEcCC-----CCeEEEEECCCCeEEeEeeCCCCc----ceEEECCCCCEEEEEec-----
Confidence            11  1   11222345544444332     24788899987542 233322111    1222 236776665554     


Q ss_pred             CCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEc--CeEEEEeCCCCcE
Q 045675          277 SRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSV--DQFFLFNPKTKRN  335 (382)
Q Consensus       277 ~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~--~~~~~yd~~t~~~  335 (382)
                        ....+.+|..+..   .....+........+.+..+|..+ +...  +.+..||+++++.
T Consensus       135 --~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       135 --TTNMAHFIDTKTY---EIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             --CCCeEEEEeCCCC---eEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence              1334455544332   333333222222334555677644 4433  3899999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=85.89  E-value=19  Score=33.91  Aligned_cols=104  Identities=12%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             ceEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEE
Q 045675          208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFEL  285 (382)
Q Consensus       208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~i  285 (382)
                      .++..+|.+|.....+       .+.+||..+.+  |+ ..++...   ....+..++.+++....         .  .+
T Consensus        60 ~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~-~~~~~~~---~~~p~v~~~~v~v~~~~---------g--~l  117 (377)
T TIGR03300        60 QPAVAGGKVYAADADG-------TVVALDAETGKRLWR-VDLDERL---SGGVGADGGLVFVGTEK---------G--EV  117 (377)
T ss_pred             ceEEECCEEEEECCCC-------eEEEEEccCCcEeee-ecCCCCc---ccceEEcCCEEEEEcCC---------C--EE
Confidence            5677788998876554       89999987554  43 2444332   12233445666543332         2  34


Q ss_pred             EEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          286 WVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       286 W~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                      +.++...|   |....  +-.....|+.  .++.|++...+ .++++|.++++..+
T Consensus       118 ~ald~~tG~~~W~~~~--~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       118 IALDAEDGKELWRAKL--SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLW  169 (377)
T ss_pred             EEEECCCCcEeeeecc--CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceee
Confidence            44443223   76432  1111122322  34556665555 89999999887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=85.65  E-value=18  Score=33.67  Aligned_cols=86  Identities=9%  Similarity=0.031  Sum_probs=53.0

Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCc-----------eeeEeCCC
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE-----------LFWRTAMP  248 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~-----------~~~~i~~P  248 (382)
                      ....|+-++.+|+.++.-.-  ++ . -.+.|+..-=-|++-.....  ...+.++|+.+.           .|..+..|
T Consensus       200 GTysfDt~~~~W~~~GdW~L--PF-~-G~a~y~~el~~W~Gls~~~~--~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~  273 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDWML--PF-H-GQAEYVPELDLWFGLSSDGG--GGHLCACDVSSADSASPPPEWKLTWEELFPP  273 (342)
T ss_pred             EEEEEEcCCcceeeccceec--Cc-C-CccEECCCcCeEEEeccCCC--CcEEEEEeccccccCCCCCcceecccccccc
Confidence            57888888899999866511  12 1 26677766667887765331  148999999763           22223333


Q ss_pred             CCCCCCeeeEEEe-CCeEEEEEec
Q 045675          249 ELPTDCYVKALSY-DQSLALAVYP  271 (382)
Q Consensus       249 ~~~~~~~~~l~~~-~g~L~~~~~~  271 (382)
                      .........|+-+ +|+.|++...
T Consensus       274 ~~~~~~~~~Lv~lG~grFCi~~~~  297 (342)
T PF07893_consen  274 EEWRHVGATLVYLGSGRFCIVEFF  297 (342)
T ss_pred             ccccccCceEEECCCCCEEEEEEe
Confidence            3322234555555 6789998875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=85.25  E-value=33  Score=32.10  Aligned_cols=204  Identities=11%  Similarity=0.019  Sum_probs=107.7

Q ss_pred             eeeccCceE-EEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCE
Q 045675          103 IVGSCNGLL-CLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAI  180 (382)
Q Consensus       103 ~~~s~~Gll-~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~  180 (382)
                      +.-|-+|-. ++.+.. ....+.|.|..+++... +|-+..             ...|-.....|.+.++-.       .
T Consensus       110 ~~ls~dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp~~-------------~~vy~t~e~~~~~~~~Dg-------~  168 (352)
T TIGR02658       110 TSLTPDNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVPDC-------------YHIFPTANDTFFMHCRDG-------S  168 (352)
T ss_pred             EEECCCCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCCCC-------------cEEEEecCCccEEEeecC-------c
Confidence            344557754 444432 15688999999999766 554322             122223334455444422       2


Q ss_pred             EEEEECCC-CCeeeecCCC----CeeEEeCCcce-EEECceEEEEeecccccccccEEEEEECCCc------eeeEeCCC
Q 045675          181 AEVYSTST-GKWKEVAAGT----GSCVIYGGQDA-VAVKGVLHWIANGIGVLVNEKFVVSYDMNLE------LFWRTAMP  248 (382)
Q Consensus       181 ~~vyss~t-~~W~~~~~~~----~~~~~~~~~~~-v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~------~~~~i~~P  248 (382)
                      ...+++++ ++ ......+    ...+. ..++. .-.+|..+|+...+       .|...|+++.      .|..+..-
T Consensus       169 ~~~v~~d~~g~-~~~~~~~vf~~~~~~v-~~rP~~~~~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~  239 (352)
T TIGR02658       169 LAKVGYGTKGN-PKIKPTEVFHPEDEYL-INHPAYSNKSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEA  239 (352)
T ss_pred             eEEEEecCCCc-eEEeeeeeecCCcccc-ccCCceEcCCCcEEEEecCC-------eEEEEecCCCcceecceeeecccc
Confidence            22333322 22 1111110    00111 11222 23379999998775       7888886443      34333211


Q ss_pred             C---CCC-C-Ce-eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEE
Q 045675          249 E---LPT-D-CY-VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKS  321 (382)
Q Consensus       249 ~---~~~-~-~~-~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~  321 (382)
                      .   ... + .. ..+.--+++|++..+.. ..+++....=+||+++-. .+..+.+|++..-...+.+..+|+ +++..
T Consensus       240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~-~~~thk~~~~~V~ViD~~-t~kvi~~i~vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       240 EKADGWRPGGWQQVAYHRARDRIYLLADQR-AKWTHKTASRFLFVVDAK-TGKRLRKIELGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccccCCCcceeEEEcCCCCEEEEEecCC-ccccccCCCCEEEEEECC-CCeEEEEEeCCCceeeEEECCCCCeEEEEe
Confidence            1   111 1 11 22222356777744321 112222333488888864 578889998877677788888888 66655


Q ss_pred             cC---eEEEEeCCCCc-EEEE
Q 045675          322 VD---QFFLFNPKTKR-NFIL  338 (382)
Q Consensus       322 ~~---~~~~yd~~t~~-~~~v  338 (382)
                      ..   .+.++|..+.+ .+.+
T Consensus       318 n~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       318 STGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCCcEEEEECcCCeEEeee
Confidence            53   79999999885 4445

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=84.74  E-value=32  Score=31.57  Aligned_cols=117  Identities=11%  Similarity=0.024  Sum_probs=63.8

Q ss_pred             EECceEEEEeecccccccccEEEEEECC--CceeeEe----CCCCCCCCCe--eeEE-EeCCeEEEEEecCCCccCCCCC
Q 045675          211 AVKGVLHWIANGIGVLVNEKFVVSYDMN--LELFWRT----AMPELPTDCY--VKAL-SYDQSLALAVYPGLGFRSRLSN  281 (382)
Q Consensus       211 ~~~G~lywl~~~~~~~~~~~~i~~fD~~--~~~~~~i----~~P~~~~~~~--~~l~-~~~g~L~~~~~~~~~~~~~~~~  281 (382)
                      .-+|...++....     ...|.+||+.  ++++..+    ..|.......  ..+. .-+|+..++...       ...
T Consensus       183 ~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-------~~~  250 (330)
T PRK11028        183 HPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-------TAS  250 (330)
T ss_pred             CCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-------CCC
Confidence            3455555554432     2477777775  4454333    2343221111  1122 236664444433       367


Q ss_pred             eEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEE--eCCCCcEEEEe
Q 045675          282 RFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLF--NPKTKRNFILP  339 (382)
Q Consensus       282 ~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~y--d~~t~~~~~v~  339 (382)
                      .+.+|.++...+ +..+..++.....+-+.+..+|+ |+.....  .+.+|  |..++.++.+.
T Consensus       251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~  314 (330)
T PRK11028        251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG  314 (330)
T ss_pred             eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence            899999976533 77777776543344566667777 5555542  55555  55677777764

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=84.55  E-value=29  Score=32.65  Aligned_cols=136  Identities=12%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcc-eEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCee
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQD-AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYV  256 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~  256 (382)
                      .......++-.|...-........ . .. +++.+|++|.....+       .|.+||+.+..  |+.-... .......
T Consensus        36 ~~~~~~~g~~~W~~~~~~~~~~~~-~-~~~~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~-~~~~~~~  105 (370)
T COG1520          36 AVANNTSGTLLWSVSLGSGGGGIY-A-GPAPADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLG-AVAQLSG  105 (370)
T ss_pred             EEEcccCcceeeeeecccCccceE-e-ccccEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcC-cceeccC
Confidence            444455566788654222111122 1 23 599999999985544       89999998866  7654443 0000122


Q ss_pred             eEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeecCCcccceEEeeCCcEEEEEc-CeEEEEeCCC
Q 045675          257 KALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAFERIAWPVGSFRDSKIIMKSV-DQFFLFNPKT  332 (382)
Q Consensus       257 ~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-~~~~~yd~~t  332 (382)
                      .+...+|+|++-...        .   +++.+++.+|   |....... ..+..+.. ..++.+++... ..+++.|.++
T Consensus       106 ~~~~~~G~i~~g~~~--------g---~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v-~~~~~v~~~s~~g~~~al~~~t  172 (370)
T COG1520         106 PILGSDGKIYVGSWD--------G---KLYALDASTGTLVWSRNVGGS-PYYASPPV-VGDGTVYVGTDDGHLYALNADT  172 (370)
T ss_pred             ceEEeCCeEEEeccc--------c---eEEEEECCCCcEEEEEecCCC-eEEecCcE-EcCcEEEEecCCCeEEEEEccC
Confidence            233338887765554        2   7888888545   88665331 11122322 23555666644 4999999998


Q ss_pred             CcEEEE
Q 045675          333 KRNFIL  338 (382)
Q Consensus       333 ~~~~~v  338 (382)
                      ++.++.
T Consensus       173 G~~~W~  178 (370)
T COG1520         173 GTLKWT  178 (370)
T ss_pred             CcEEEE
Confidence            876544

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=84.21  E-value=1.4  Score=42.11  Aligned_cols=143  Identities=8%  Similarity=-0.067  Sum_probs=83.7

Q ss_pred             EEcccccceeccCCCCCcccccc--ceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC---CC
Q 045675          125 LWNPATNEFKGLPTPSLTESRLK--TFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG---TG  199 (382)
Q Consensus       125 V~NP~T~~~~~LP~~~~~~~~~~--~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~---~~  199 (382)
                      .=-|.+-+|.++|+-........  ......+.+.+++.++-..+.+..+ +......+.+|+.+.+.|..+...   |+
T Consensus       233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG  311 (723)
T KOG2437|consen  233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPG  311 (723)
T ss_pred             hcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCc
Confidence            34567888888887653211100  0111234466666555444444332 112234788999999999887654   44


Q ss_pred             eeEEeCCcceEEECc--eEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCCCC-----CeeeEEEeCCe--E
Q 045675          200 SCVIYGGQDAVAVKG--VLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELPTD-----CYVKALSYDQS--L  265 (382)
Q Consensus       200 ~~~~~~~~~~v~~~G--~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~~~-----~~~~l~~~~g~--L  265 (382)
                      .+..   ++.|..-.  ++|-++..-..+     ....-+..||..++.|..+..-....+     ....+++.+.+  |
T Consensus       312 ~RsC---HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i  388 (723)
T KOG2437|consen  312 ARSC---HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI  388 (723)
T ss_pred             chhh---hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence            4433   55554444  777776543322     244578999999999999866544322     34445555555  8


Q ss_pred             EEEEec
Q 045675          266 ALAVYP  271 (382)
Q Consensus       266 ~~~~~~  271 (382)
                      ||+++.
T Consensus       389 yVfGGr  394 (723)
T KOG2437|consen  389 YVFGGR  394 (723)
T ss_pred             EEecCe
Confidence            887775

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.58  E-value=43  Score=32.11  Aligned_cols=159  Identities=13%  Similarity=0.153  Sum_probs=88.2

Q ss_pred             EEEEEECCCCCeee-ecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee-eEe---CCCCCCCCC
Q 045675          180 IAEVYSTSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRT---AMPELPTDC  254 (382)
Q Consensus       180 ~~~vyss~t~~W~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i---~~P~~~~~~  254 (382)
                      .+++|++.+..=++ ....... ..   ...+..+|.|...++..      ..|-.||..+... +.+   ..|..    
T Consensus        49 rvqly~~~~~~~~k~~srFk~~-v~---s~~fR~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~----  114 (487)
T KOG0310|consen   49 RVQLYSSVTRSVRKTFSRFKDV-VY---SVDFRSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVH----  114 (487)
T ss_pred             EEEEEecchhhhhhhHHhhccc-ee---EEEeecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCcee----
Confidence            79999998865433 2221111 11   23445679999877654      5889999666322 222   22221    


Q ss_pred             eeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCCc-EEEEEcC--eEEEEeC
Q 045675          255 YVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDSK-IIMKSVD--QFFLFNP  330 (382)
Q Consensus       255 ~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~  330 (382)
                      .......++.+.+.+..        .....+|.+...  -+ ...+.- .+.++-..+....+ +++....  .+-.||.
T Consensus       115 ~~~f~~~d~t~l~s~sD--------d~v~k~~d~s~a--~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  115 VTKFSPQDNTMLVSGSD--------DKVVKYWDLSTA--YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             EEEecccCCeEEEecCC--------CceEEEEEcCCc--EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            23333455665554443        778899998876  22 334422 22345455554434 5554443  8889999


Q ss_pred             CCCcEEEEeeeCCCCCeEEEEEEee--ceeecCCCCc
Q 045675          331 KTKRNFILPIDSGMGYSYKVFTYVD--SIVAVNGEND  365 (382)
Q Consensus       331 ~t~~~~~v~~~~~~~~~~~~~~y~~--SLv~~~~~~~  365 (382)
                      ++..-+.+.+..+..  -....|.|  |++-.+++++
T Consensus       184 R~~~~~v~elnhg~p--Ve~vl~lpsgs~iasAgGn~  218 (487)
T KOG0310|consen  184 RSLTSRVVELNHGCP--VESVLALPSGSLIASAGGNS  218 (487)
T ss_pred             ccCCceeEEecCCCc--eeeEEEcCCCCEEEEcCCCe
Confidence            998755556655443  33344444  4555555543

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain

Probab=83.47  E-value=4.4  Score=30.76  Aligned_cols=44  Identities=7%  Similarity=0.042  Sum_probs=31.2

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEe
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVN  172 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~  172 (382)
                      ..++++||.|+.|..+-+.+...        ..+.+-+++..+.|+|++...
T Consensus         9 A~Vm~~d~~tk~W~P~~~~~~~l--------s~V~~~~~~~~~~yrIvg~~~   52 (111)
T cd01207           9 ASVMVYDDSNKKWVPAGGGSQGF--------SRVQIYHHPRNNTFRVVGRKL   52 (111)
T ss_pred             EEeeEEcCCCCcEEcCCCCCCCc--------ceEEEEEcCCCCEEEEEEeec
Confidence            47899999999977554422211        355677788889999998753

Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.88  E-value=41  Score=35.08  Aligned_cols=31  Identities=16%  Similarity=0.051  Sum_probs=24.4

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCC--ceeeE
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL--ELFWR  244 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~--~~~~~  244 (382)
                      ..++.++|.+|.-+..+       .+.++|..|  +.|+.
T Consensus       188 ~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~  220 (764)
T TIGR03074       188 ATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF  220 (764)
T ss_pred             cCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence            47888999999976554       899999975  56664

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=81.79  E-value=2.2  Score=26.87  Aligned_cols=25  Identities=12%  Similarity=0.112  Sum_probs=19.9

Q ss_pred             CCEEEEEECCCCCeeeecCCCCeeE
Q 045675          178 DAIAEVYSTSTGKWKEVAAGTGSCV  202 (382)
Q Consensus       178 ~~~~~vyss~t~~W~~~~~~~~~~~  202 (382)
                      ...+.+|+..+++|++++..|.++.
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~~R~   42 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPPPRS   42 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCCCcc
Confidence            3589999999999999966655443

>cd01206 Homer Homer type EVH1 domain

Probab=80.91  E-value=4.6  Score=30.25  Aligned_cols=41  Identities=12%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             ceeEEEEccccc-ceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEE
Q 045675          120 GMAFVLWNPATN-EFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIV  171 (382)
Q Consensus       120 ~~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~  171 (382)
                      ...++++||.|+ .|...-+..           ..+.+-+|+..+.|+||.+-
T Consensus        10 rA~V~~yd~~tKk~WvPs~~~~-----------~~V~~y~~~~~ntfRIi~~~   51 (111)
T cd01206          10 RAHVFQIDPKTKKNWIPASKHA-----------VTVSYFYDSTRNVYRIISVG   51 (111)
T ss_pred             eeEEEEECCCCcceeEeCCCCc-----------eeEEEEecCCCcEEEEEEec
Confidence            457999999986 787443211           46678889999999999964

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=80.36  E-value=2.6  Score=26.43  Aligned_cols=35  Identities=6%  Similarity=0.023  Sum_probs=17.9

Q ss_pred             CeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCC
Q 045675          164 DYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGT  198 (382)
Q Consensus       164 ~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~  198 (382)
                      ...|++...........+.+|+..+++|++++.+|
T Consensus        14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             EEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             eEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            34444444322224458999999999999986553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.54
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.53
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.53
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.53
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.49
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.46
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.45
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.18
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.18
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.14
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.71
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.02
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.58
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.24
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.1
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.72
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.47
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.08
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.02
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	94.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	94.41
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.2
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	93.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	93.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	93.64
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.63
3jro_A	753	Fusion protein of protein transport protein SEC13	93.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	93.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	93.36
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	93.28
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.18
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	93.14
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	92.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.75
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.44
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.43
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.34
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.31
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	92.26
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	92.14
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	92.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	91.92
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	91.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	91.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.6
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.39
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.33
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.31
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	90.74
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	90.39
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	90.36
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	90.09
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	89.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	89.61
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	89.45
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	89.19
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	89.08
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	88.99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	88.74
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	88.7
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	87.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	87.5
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	87.16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	86.67
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	86.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	86.16
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.1
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	85.89
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	85.86
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	85.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	85.58
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	85.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	84.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	84.43
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	84.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	84.29
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	84.09
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	84.05
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	83.99
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	83.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	83.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	83.04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	83.02
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	82.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	82.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	82.23
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	81.84
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	81.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	81.36
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	81.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	81.13
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	81.03
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	80.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	80.77

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.54  E-value=1.9e-12  Score=117.97  Aligned_cols=214  Identities=13%  Similarity=0.031  Sum_probs=142.7

Q ss_pred             eeccCceEEEeeCC-----C--C--ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEee-
Q 045675          104 VGSCNGLLCLDVSS-----A--F--GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF-  173 (382)
Q Consensus       104 ~~s~~Gll~~~~~~-----~--~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-  173 (382)
                      ....+|.|++..+.     .  .  ...++++||.|++|..+|++|..+..        ++....  .+...|++.... 
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~~lyv~GG~~~~  110 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL--------FGLGEA--LNSIYVVGGREIK  110 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES--------CEEEEE--TTEEEEECCEESS
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc--------eeEEEE--CCEEEEEeCCcCC
Confidence            44457777655441     1  0  23489999999999999988764321        111111  233333333221 


Q ss_pred             -cCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCC
Q 045675          174 -QARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELP  251 (382)
Q Consensus       174 -~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~  251 (382)
                       .......+++|+..+++|+.++.++.++..   +.++.++|++|.+++..........+.+||+.+++|+.+ ++|..+
T Consensus       111 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  187 (315)
T 4asc_A          111 DGERCLDSVMCYDRLSFKWGESDPLPYVVYG---HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR  187 (315)
T ss_dssp             TTCCBCCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             CCCcccceEEEECCCCCcEeECCCCCCcccc---eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch
Confidence             122345899999999999999887655443   678889999999998733323456899999999999998 566554


Q ss_pred             CCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEc--------
Q 045675          252 TDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSV--------  322 (382)
Q Consensus       252 ~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~--------  322 (382)
                        .....+..+|+|++++..  ..   ....-.+|.++-... |+.+..++.........+ -++.|++...        
T Consensus       188 --~~~~~~~~~~~iyv~GG~--~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~  259 (315)
T 4asc_A          188 --SLFGATVHDGRIIVAAGV--TD---TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS-LVGTLYAIGGFATLETES  259 (315)
T ss_dssp             --BSCEEEEETTEEEEEEEE--CS---SSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEEEEECTT
T ss_pred             --hceEEEEECCEEEEEecc--CC---CCccceEEEEECCCCeEEECCCCCCcccceeEEE-ECCEEEEECCccccCcCC
Confidence              456677889999999987  31   122346777765534 999876654443333333 3566766543        


Q ss_pred             --------CeEEEEeCCCCcEEEE
Q 045675          323 --------DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       323 --------~~~~~yd~~t~~~~~v  338 (382)
                              +.+..||+++++|+.+
T Consensus       260 ~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          260 GELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             SCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ccccccccCcEEEecCCCChhhhh
Confidence                    1588999999999999

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.53  E-value=6.8e-13  Score=120.41  Aligned_cols=216  Identities=10%  Similarity=0.014  Sum_probs=142.8

Q ss_pred             eeccCceEEEeeCCC--CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675          104 VGSCNGLLCLDVSSA--FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA  181 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  181 (382)
                      ....+|.|++..+..  ....+.++||.|++|..+|+++.....  .   ...  .+   .+...|++...........+
T Consensus        51 ~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~---~~~--~~---~~~iyv~GG~~~~~~~~~~~  120 (306)
T 3ii7_A           51 CVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--L---AAC--AA---EGKIYTSGGSEVGNSALYLF  120 (306)
T ss_dssp             EEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--C---EEE--EE---TTEEEEECCBBTTBSCCCCE
T ss_pred             EEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--e---eEE--EE---CCEEEEECCCCCCCcEeeeE
Confidence            344577777665531  146789999999999999887754321  1   111  11   22233333221112234589


Q ss_pred             EEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccc---cccEEEEEECCCceeeEe-CCCCCCCCCeee
Q 045675          182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLV---NEKFVVSYDMNLELFWRT-AMPELPTDCYVK  257 (382)
Q Consensus       182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~---~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~  257 (382)
                      ++|++.+++|+.++.++..+..   +.++.++|++|.+++......   ....+.+||+.+++|+.+ ++|..+  ....
T Consensus       121 ~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~  195 (306)
T 3ii7_A          121 ECYDTRTESWHTKPSMLTQRCS---HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR--KNHG  195 (306)
T ss_dssp             EEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC--BSCE
T ss_pred             EEEeCCCCceEeCCCCcCCcce---eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh--hcce
Confidence            9999999999999887655443   578889999999988643221   145799999999999999 566554  4566


Q ss_pred             EEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEe
Q 045675          258 ALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFN  329 (382)
Q Consensus       258 l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd  329 (382)
                      ++..+|+|++++..  ..   ....-.+|.++-.. .|+.+..++.........+ -++.|++...       +.+..||
T Consensus       196 ~~~~~~~i~v~GG~--~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd  269 (306)
T 3ii7_A          196 LVFVKDKIFAVGGQ--NG---LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYN  269 (306)
T ss_dssp             EEEETTEEEEECCE--ET---TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEE
T ss_pred             EEEECCEEEEEeCC--CC---CCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEc
Confidence            77889999999886  21   11122456665443 3998876654333333333 3667877764       2799999


Q ss_pred             CCCCcEEEEee
Q 045675          330 PKTKRNFILPI  340 (382)
Q Consensus       330 ~~t~~~~~v~~  340 (382)
                      +++++|+.+..
T Consensus       270 ~~~~~W~~~~~  280 (306)
T 3ii7_A          270 TETDKWVANSK  280 (306)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEeCCC
Confidence            99999999953

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.53  E-value=1.7e-12  Score=117.53  Aligned_cols=213  Identities=13%  Similarity=0.026  Sum_probs=141.7

Q ss_pred             eccCceEEEeeCCC---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675          105 GSCNGLLCLDVSSA---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA  181 (382)
Q Consensus       105 ~s~~Gll~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  181 (382)
                      ...+|.|++..+..   ....+.++||.|++|..+|+++.....  .      +....  .+...|++... .......+
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~------~~~~~--~~~iyv~GG~~-~~~~~~~~  126 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST--L------GAAVL--NGLLYAVGGFD-GSTGLSSV  126 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--C------EEEEE--TTEEEEEEEEC-SSCEEEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc--e------EEEEE--CCEEEEEcCCC-CCccCceE
Confidence            44577777665521   145789999999999999987764321  1      11111  23333333332 12223489


Q ss_pred             EEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeeccccc-ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEE
Q 045675          182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVL-VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKAL  259 (382)
Q Consensus       182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~  259 (382)
                      ++|++.+++|+.++.++..+..   +.++.++|++|.+++..... .....+..||+.+++|+.+ ++|..+  ....++
T Consensus       127 ~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~  201 (302)
T 2xn4_A          127 EAYNIKSNEWFHVAPMNTRRSS---VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR--SGAGVG  201 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBS---CEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCC--BSCEEE
T ss_pred             EEEeCCCCeEeecCCCCCcccC---ceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccc--ccccEE
Confidence            9999999999999877654433   57888999999998764321 1235799999999999998 566554  456677


Q ss_pred             EeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCC
Q 045675          260 SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPK  331 (382)
Q Consensus       260 ~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~  331 (382)
                      ..+|+|++++..  ..   ....-.+|.++-.. .|+.+..++.......+.+ .++.|++....       .+..||++
T Consensus       202 ~~~~~iyv~GG~--~~---~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          202 VLNNLLYAVGGH--DG---PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EETTEEEEECCB--SS---SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             EECCEEEEECCC--CC---CcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCC
Confidence            889999999886  21   11122456665443 3999876654433323333 36677777642       69999999


Q ss_pred             CCcEEEEe
Q 045675          332 TKRNFILP  339 (382)
Q Consensus       332 t~~~~~v~  339 (382)
                      +++|+.+.
T Consensus       276 ~~~W~~~~  283 (302)
T 2xn4_A          276 TDKWTVVS  283 (302)
T ss_dssp             TTEEEECS
T ss_pred             CCeEEECC
Confidence            99999985

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.53  E-value=2.2e-12  Score=117.78  Aligned_cols=215  Identities=11%  Similarity=0.041  Sum_probs=141.7

Q ss_pred             eeeccCceEEEeeCCC-----C----ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEee
Q 045675          103 IVGSCNGLLCLDVSSA-----F----GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF  173 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~-----~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~  173 (382)
                      .+...+|.|++..+..     .    ...++++||.|++|..+|++|.....  +      +....  .+...|++....
T Consensus        51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~------~~~~~--~~~iyv~GG~~~  120 (318)
T 2woz_A           51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL--F------GLGEV--DDKIYVVAGKDL  120 (318)
T ss_dssp             EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS--C------EEEEE--TTEEEEEEEEBT
T ss_pred             EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc--c------ceEEE--CCEEEEEcCccC
Confidence            3445677777665521     0    12388999999999999987764321  1      11111  233333333321


Q ss_pred             -cCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCC
Q 045675          174 -QARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELP  251 (382)
Q Consensus       174 -~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~  251 (382)
                       .......+++|++.+++|+.++.++..+..   +.++.++|++|.+++..........+..||+.+++|+.+ ++|..+
T Consensus       121 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  197 (318)
T 2woz_A          121 QTEASLDSVLCYDPVAAKWSEVKNLPIKVYG---HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR  197 (318)
T ss_dssp             TTCCEEEEEEEEETTTTEEEEECCCSSCEES---CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCcccceEEEEeCCCCCEeECCCCCCcccc---cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc
Confidence             111234899999999999999877655544   578889999999987643222345799999999999999 556554


Q ss_pred             CCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEc--------
Q 045675          252 TDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSV--------  322 (382)
Q Consensus       252 ~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~--------  322 (382)
                        .....+..+|+|++++..  ..   ....-.+|.++-... |+++..++.......+.+ .++.|++..+        
T Consensus       198 --~~~~~~~~~~~iyv~GG~--~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~  269 (318)
T 2woz_A          198 --SMFGVAIHKGKIVIAGGV--TE---DGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLES  269 (318)
T ss_dssp             --BSCEEEEETTEEEEEEEE--ET---TEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC---
T ss_pred             --ccceEEEECCEEEEEcCc--CC---CCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCC
Confidence              445677889999999986  21   122345666664433 999876665433333333 3567776642        


Q ss_pred             --------CeEEEEeCCCCcEEEE
Q 045675          323 --------DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       323 --------~~~~~yd~~t~~~~~v  338 (382)
                              +.++.||+++++|+++
T Consensus       270 ~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          270 KEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             -CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ceeccceeeeEEEEeCCCCEehhh
Confidence                    2689999999999999

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.53  E-value=1.1e-12  Score=119.05  Aligned_cols=234  Identities=12%  Similarity=0.017  Sum_probs=148.0

Q ss_pred             ceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC
Q 045675          109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST  188 (382)
Q Consensus       109 Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t  188 (382)
                      +.|++..+......+.++||.+++|..+++++.....  .      +....  .+.  ++.+..........+++|+..+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~------~~~~~--~~~--lyv~GG~~~~~~~~~~~~d~~~   79 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRD--A------ACVFW--DNV--VYILGGSQLFPIKRMDCYNVVK   79 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBS--C------EEEEE--TTE--EEEECCBSSSBCCEEEEEETTT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccce--e------EEEEE--CCE--EEEEeCCCCCCcceEEEEeCCC
Confidence            4454444422245789999999999999987764321  1      11111  222  3333222222346899999999


Q ss_pred             CCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEE
Q 045675          189 GKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLAL  267 (382)
Q Consensus       189 ~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~  267 (382)
                      ++|+..+.++..+..   +.++.++|.+|.+++..........+..||+.+++|+.+ ++|..+  .....+..+|+|++
T Consensus        80 ~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv  154 (306)
T 3ii7_A           80 DSWYSKLGPPTPRDS---LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR--CSHGMVEANGLIYV  154 (306)
T ss_dssp             TEEEEEECCSSCCBS---CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEE
T ss_pred             CeEEECCCCCccccc---eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc--ceeEEEEECCEEEE
Confidence            999999887654443   578889999999988652323456799999999999998 566554  45566778999999


Q ss_pred             EEecCCCccCCC-CCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEE
Q 045675          268 AVYPGLGFRSRL-SNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       268 ~~~~~~~~~~~~-~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v  338 (382)
                      ++..  ...... ...-.+|.++-.. .|+++..++......... ..++.|++...       +.+..||+++++|+.+
T Consensus       155 ~GG~--~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          155 CGGS--LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             ECCE--ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ECCC--CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence            9886  211000 0023455555432 499987665433333333 33667777653       2799999999999999


Q ss_pred             eeeCCCCCeEEEEEEeeceeecCC
Q 045675          339 PIDSGMGYSYKVFTYVDSIVAVNG  362 (382)
Q Consensus       339 ~~~~~~~~~~~~~~y~~SLv~~~~  362 (382)
                      .......+...+..+...|.-+.+
T Consensus       232 ~~~p~~r~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          232 SPMPWKGVTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             CCCSCCBSCCEEEEETTEEEEEEC
T ss_pred             CCCCCCccceeEEEECCEEEEEeC
Confidence            643322223445555555555544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.49  E-value=2.6e-12  Score=116.77  Aligned_cols=214  Identities=15%  Similarity=0.064  Sum_probs=141.1

Q ss_pred             eeccCceEEEeeCC----C---CceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC
Q 045675          104 VGSCNGLLCLDVSS----A---FGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR  176 (382)
Q Consensus       104 ~~s~~Gll~~~~~~----~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~  176 (382)
                      ....+|.|++..+.    .   ....++++||.|++|..+|+++.....  .      +....  .+...|++... ...
T Consensus        66 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~------~~~~~--~~~iyv~GG~~-~~~  134 (308)
T 1zgk_A           66 GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR--I------GVGVI--DGHIYAVGGSH-GCI  134 (308)
T ss_dssp             EEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT--C------EEEEE--TTEEEEECCEE-TTE
T ss_pred             EEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc--c------EEEEE--CCEEEEEcCCC-CCc
Confidence            34557777766542    1   134689999999999999987764321  1      11111  22233333222 122


Q ss_pred             CCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCe
Q 045675          177 YDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCY  255 (382)
Q Consensus       177 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~  255 (382)
                      ....+++|+..+++|+.++.++..+..   +.++.++|++|.+++..... ....+..||+.+++|+.+ ++|..+  ..
T Consensus       135 ~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r--~~  208 (308)
T 1zgk_A          135 HHNSVERYEPERDEWHLVAPMLTRRIG---VGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR--SG  208 (308)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBS---CEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC--BS
T ss_pred             ccccEEEECCCCCeEeECCCCCccccc---eEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCcc--cc
Confidence            345899999999999999877554433   57888899999998765322 245799999999999998 555544  44


Q ss_pred             eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEE
Q 045675          256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFL  327 (382)
Q Consensus       256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~  327 (382)
                      ...+..+++|++++..  ..   ....-.+|.++-.. .|+++..++.........+ .++.|++...       +.+..
T Consensus       209 ~~~~~~~~~iyv~GG~--~~---~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~  282 (308)
T 1zgk_A          209 AGVCVLHNCIYAAGGY--DG---QDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVEC  282 (308)
T ss_dssp             CEEEEETTEEEEECCB--CS---SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEE
T ss_pred             ceEEEECCEEEEEeCC--CC---CCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEE
Confidence            5667789999999886  21   11233455555432 3998876654433223333 3667777654       17999


Q ss_pred             EeCCCCcEEEEee
Q 045675          328 FNPKTKRNFILPI  340 (382)
Q Consensus       328 yd~~t~~~~~v~~  340 (382)
                      ||+++++|+++.-
T Consensus       283 yd~~~~~W~~~~~  295 (308)
T 1zgk_A          283 YDPDTDTWSEVTR  295 (308)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EcCCCCEEeecCC
Confidence            9999999999954

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.49  E-value=1.3e-11  Score=111.51  Aligned_cols=212  Identities=10%  Similarity=0.014  Sum_probs=140.6

Q ss_pred             eeccCceEEEeeCCC---CceeEEEEcccccc---eeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEee-cCC
Q 045675          104 VGSCNGLLCLDVSSA---FGMAFVLWNPATNE---FKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF-QAR  176 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~---~~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~~  176 (382)
                      ....+|.|++..+..   ....++++||.|++   |..+|+++.....  .      +....  .+  +++.+... ...
T Consensus        58 ~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~--~------~~~~~--~~--~lyv~GG~~~~~  125 (301)
T 2vpj_A           58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL--A------GATTL--GD--MIYVSGGFDGSR  125 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS--C------EEEEE--TT--EEEEECCBCSSC
T ss_pred             EEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc--e------eEEEE--CC--EEEEEcccCCCc
Confidence            344577776665421   14579999999999   9999887764321  1      11111  12  23333221 122


Q ss_pred             CCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCe
Q 045675          177 YDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCY  255 (382)
Q Consensus       177 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~  255 (382)
                      ....+++|++.+++|+.++.++..+..   +.++.++|++|.+++..... ....+.+||+.+++|+.+ ++|..+  ..
T Consensus       126 ~~~~~~~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r--~~  199 (301)
T 2vpj_A          126 RHTSMERYDPNIDQWSMLGDMQTAREG---AGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTPMATKR--SG  199 (301)
T ss_dssp             BCCEEEEEETTTTEEEEEEECSSCCBS---CEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECCCSSCC--BS
T ss_pred             ccceEEEEcCCCCeEEECCCCCCCccc---ceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCCCCccc--cc
Confidence            345899999999999999877554433   57888899999998754321 345799999999999998 556554  45


Q ss_pred             eeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEE
Q 045675          256 VKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFL  327 (382)
Q Consensus       256 ~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~  327 (382)
                      ..++..+++|++++..  ..   ....-.+|.++-.. .|+.+..++.........+ .++.|++....       .+..
T Consensus       200 ~~~~~~~~~i~v~GG~--~~---~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~  273 (301)
T 2vpj_A          200 AGVALLNDHIYVVGGF--DG---TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIEC  273 (301)
T ss_dssp             CEEEEETTEEEEECCB--CS---SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEE
T ss_pred             ceEEEECCEEEEEeCC--CC---CcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEE
Confidence            6677889999999886  21   11123455555432 4998876654443333333 36677776641       7899


Q ss_pred             EeCCCCcEEEEe
Q 045675          328 FNPKTKRNFILP  339 (382)
Q Consensus       328 yd~~t~~~~~v~  339 (382)
                      ||+++++|+.+.
T Consensus       274 yd~~~~~W~~~~  285 (301)
T 2vpj_A          274 YDPIIDSWEVVT  285 (301)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EcCCCCeEEEcC
Confidence            999999999985

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.46  E-value=1e-11  Score=113.21  Aligned_cols=221  Identities=12%  Similarity=0.052  Sum_probs=138.4

Q ss_pred             eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-C--C--CCEEEEEECCCCCeeeecC
Q 045675          122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-R--Y--DAIAEVYSTSTGKWKEVAA  196 (382)
Q Consensus       122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~--~--~~~~~vyss~t~~W~~~~~  196 (382)
                      .+.++||.|++|.. ++++....+      ..++.  ....+...|++...... .  .  ...+++|+..+++|+.++.
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r------~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPK------NHVSL--VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCS------SEEEE--ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             ceEEECCCCCeEec-CCCCCCCCc------cceEE--EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            78999999999986 333321111      11122  22344555555542111 1  1  1258999999999999987


Q ss_pred             CCCeeEEeCCcceEEECceEEEEeeccc--ccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCC
Q 045675          197 GTGSCVIYGGQDAVAVKGVLHWIANGIG--VLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGL  273 (382)
Q Consensus       197 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~  273 (382)
                      ++.++..   +.++.++|.+|.+++...  .......+..||+.+++|+.+ ++|..+  .....+..+|+|++++..  
T Consensus        85 ~p~~r~~---~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~--  157 (315)
T 4asc_A           85 LPSPRCL---FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--YGHTVLSHMDLVYVIGGK--  157 (315)
T ss_dssp             BSSCEES---CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCB--
T ss_pred             CCcchhc---eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--cceeEEEECCEEEEEeCC--
Confidence            7655544   688889999999988531  122345799999999999998 666654  456677899999999886  


Q ss_pred             CccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEEEeeeCCCC
Q 045675          274 GFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFILPIDSGMG  345 (382)
Q Consensus       274 ~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~v~~~~~~~  345 (382)
                      ...  ....-.+|.++-.. .|+++..++......... ..++.|++....       .+..||+++++|+.+.......
T Consensus       158 ~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  234 (315)
T 4asc_A          158 GSD--RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQER  234 (315)
T ss_dssp             CTT--SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred             CCC--CcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcc
Confidence            211  12223455555443 399987665443333333 346677776542       7999999999999996432222


Q ss_pred             CeEEEEEEeeceeecC
Q 045675          346 YSYKVFTYVDSIVAVN  361 (382)
Q Consensus       346 ~~~~~~~y~~SLv~~~  361 (382)
                      +...+..+...|.-+.
T Consensus       235 ~~~~~~~~~~~l~v~G  250 (315)
T 4asc_A          235 SSLSLVSLVGTLYAIG  250 (315)
T ss_dssp             BSCEEEEETTEEEEEE
T ss_pred             cceeEEEECCEEEEEC
Confidence            1233444444444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.46  E-value=1e-11  Score=112.27  Aligned_cols=220  Identities=12%  Similarity=0.007  Sum_probs=142.6

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEee-cCCCCCEEEEEECCCCC---eeeec
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF-QARYDAIAEVYSTSTGK---WKEVA  195 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~~~~~~~~vyss~t~~---W~~~~  195 (382)
                      ...++++||.|++|..+|+++.....  .      +....  .+  +++.+... .......+++|+..+++   |+.++
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~------~~~~~--~~--~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~   97 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRY--V------ASVSL--HD--RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA   97 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS--C------EEEEE--TT--EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhcc--c------cEEEE--CC--EEEEEcCCCCCccCceEEEEECCCCCCCeeEECC
Confidence            45789999999999999977754321  1      11111  12  23333221 12234589999999999   99998


Q ss_pred             CCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCC
Q 045675          196 AGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLG  274 (382)
Q Consensus       196 ~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~  274 (382)
                      .++..+..   +.++.++|++|.+++..... ....+..||+.+++|+.+ ++|..+  .....+..+|+|++++..  .
T Consensus        98 ~~p~~r~~---~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~--~  169 (301)
T 2vpj_A           98 PMNVRRGL---AGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTAR--EGAGLVVASGVIYCLGGY--D  169 (301)
T ss_dssp             CCSSCCBS---CEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCC--BSCEEEEETTEEEEECCB--C
T ss_pred             CCCCCccc---eeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCc--ccceEEEECCEEEEECCC--C
Confidence            77655443   57888999999998765321 245899999999999998 566554  455667789999999886  2


Q ss_pred             ccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEEeeeCCCCC
Q 045675          275 FRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFILPIDSGMGY  346 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v~~~~~~~~  346 (382)
                      .   ....-.+|.++-.. .|+++..++..... ...+..++.|++...       +.+..||+++++|+.+.......+
T Consensus       170 ~---~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          170 G---LNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             S---SCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             C---CcccceEEEEeCCCCcEEeCCCCCccccc-ceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence            1   11223455555432 49998766543322 233334667777664       279999999999999964322222


Q ss_pred             eEEEEEEeeceeecCCC
Q 045675          347 SYKVFTYVDSIVAVNGE  363 (382)
Q Consensus       347 ~~~~~~y~~SLv~~~~~  363 (382)
                      ...+..+...|.-+.+.
T Consensus       246 ~~~~~~~~~~i~v~GG~  262 (301)
T 2vpj_A          246 YVGATVLRGRLYAIAGY  262 (301)
T ss_dssp             SCEEEEETTEEEEECCB
T ss_pred             ceeEEEECCEEEEEcCc
Confidence            34455555566555543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.45  E-value=7.2e-12  Score=113.38  Aligned_cols=223  Identities=13%  Similarity=0.061  Sum_probs=142.7

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.++||.+++|..++++|.....      .  +....  .+...|++... .......+++|+..+++|+.++.++.
T Consensus        29 ~~~~~~~d~~~~~W~~~~~~p~~r~~------~--~~~~~--~~~lyv~GG~~-~~~~~~~~~~~d~~~~~W~~~~~~p~   97 (302)
T 2xn4_A           29 IRSVECYDFKEERWHQVAELPSRRCR------A--GMVYM--AGLVFAVGGFN-GSLRVRTVDSYDPVKDQWTSVANMRD   97 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBS------C--EEEEE--TTEEEEESCBC-SSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred             CCcEEEEcCcCCcEeEcccCCccccc------c--eEEEE--CCEEEEEeCcC-CCccccceEEECCCCCceeeCCCCCc
Confidence            34688999999999999877764321      1  11111  12222222211 12234589999999999999988765


Q ss_pred             eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCC
Q 045675          200 SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSR  278 (382)
Q Consensus       200 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~  278 (382)
                      .+..   +.++.++|.+|.+++..... ....+..||+.+++|+.+ ++|..+  .....+..+|+|++++..  ... .
T Consensus        98 ~r~~---~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~--~~~-~  168 (302)
T 2xn4_A           98 RRST---LGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNTRR--SSVGVGVVGGLLYAVGGY--DVA-S  168 (302)
T ss_dssp             CCBS---CEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSSCC--BSCEEEEETTEEEEECCE--ETT-T
T ss_pred             cccc---eEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCCcc--cCceEEEECCEEEEEeCC--CCC-C
Confidence            5443   57888999999998865321 245799999999999998 556544  456677889999999886  210 0


Q ss_pred             CCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEEeeeCCCCCeEEE
Q 045675          279 LSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFILPIDSGMGYSYKV  350 (382)
Q Consensus       279 ~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v~~~~~~~~~~~~  350 (382)
                      ....-.+|.++-.. .|+++..++......... ..++.||+...       +.+..||+++++|+.+...........+
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~  247 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV  247 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence            00122355555433 399987665443333333 34667777753       2799999999999999643222223445


Q ss_pred             EEEeeceeecCCC
Q 045675          351 FTYVDSIVAVNGE  363 (382)
Q Consensus       351 ~~y~~SLv~~~~~  363 (382)
                      ..+...|.-+.+.
T Consensus       248 ~~~~~~i~v~GG~  260 (302)
T 2xn4_A          248 CAVNGLLYVVGGD  260 (302)
T ss_dssp             EEETTEEEEECCB
T ss_pred             EEECCEEEEECCc
Confidence            5555566655543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.44  E-value=5.3e-12  Score=114.71  Aligned_cols=222  Identities=11%  Similarity=0.005  Sum_probs=142.7

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEe---ecCCCCCEEEEEECCCCCeeeecC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVN---FQARYDAIAEVYSTSTGKWKEVAA  196 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~---~~~~~~~~~~vyss~t~~W~~~~~  196 (382)
                      ...+.++||.+++|..++++|.....      .  +....  .+...|++...   ........+++|+..+++|+.++.
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~------~--~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~  107 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSG------L--AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP  107 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS------C--EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             cceEEEEcCCCCeEeECCCCCccccc------c--eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC
Confidence            45789999999999999877764321      1  11111  23333333331   111223579999999999999987


Q ss_pred             CCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCc
Q 045675          197 GTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGF  275 (382)
Q Consensus       197 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~  275 (382)
                      ++..+..   +.++.++|++|.+++..... ....+..||+.+++|+.+ ++|..+  .....+..+++|++++..  ..
T Consensus       108 ~p~~r~~---~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~--~~  179 (308)
T 1zgk_A          108 MSVPRNR---IGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLTRR--IGVGVAVLNRLLYAVGGF--DG  179 (308)
T ss_dssp             CSSCCBT---CEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCB--CS
T ss_pred             CCcCccc---cEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCccc--cceEEEEECCEEEEEeCC--CC
Confidence            7554433   57888899999998754321 235799999999999998 566554  445667789999999886  21


Q ss_pred             cCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEEeeeCCCCCe
Q 045675          276 RSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFILPIDSGMGYS  347 (382)
Q Consensus       276 ~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v~~~~~~~~~  347 (382)
                       .....  .+|.++-.. .|+.+..++.........+ .++.||+...       +.+..||+++++|+.+.......+.
T Consensus       180 -~~~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  255 (308)
T 1zgk_A          180 -TNRLN--SAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  255 (308)
T ss_dssp             -SCBCC--CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             -CCcCc--eEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence             11123  345554432 4998876654433333333 3667777664       2799999999999998633222223


Q ss_pred             EEEEEEeeceeecCCC
Q 045675          348 YKVFTYVDSIVAVNGE  363 (382)
Q Consensus       348 ~~~~~y~~SLv~~~~~  363 (382)
                      ..+..+...|.-+.+.
T Consensus       256 ~~~~~~~~~i~v~GG~  271 (308)
T 1zgk_A          256 LGITVHQGRIYVLGGY  271 (308)
T ss_dssp             CEEEEETTEEEEECCB
T ss_pred             eEEEEECCEEEEEcCc
Confidence            4455555566555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.40  E-value=6.5e-11  Score=107.92  Aligned_cols=234  Identities=14%  Similarity=0.080  Sum_probs=143.7

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEee-cCC----CCCEEE
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF-QAR----YDAIAE  182 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~~----~~~~~~  182 (382)
                      ++.|++..+.    ...++||.|++|...|.+...+ +      ..++.  ....+...|++.... ...    ....++
T Consensus        15 ~~~i~~~GG~----~~~~yd~~~~~W~~~~~~~~~~-r------~~~~~--~~~~~~lyv~GG~~~~~~~~~~~~~~~~~   81 (318)
T 2woz_A           15 KDLILLVNDT----AAVAYDPMENECYLTALAEQIP-R------NHSSI--VTQQNQVYVVGGLYVDEENKDQPLQSYFF   81 (318)
T ss_dssp             EEEEEEECSS----EEEEEETTTTEEEEEEECTTSC-S------SEEEE--ECSSSCEEEEESSCC-------CCCBEEE
T ss_pred             cchhhhcccc----ceEEECCCCCceecccCCccCC-c------cceEE--EEECCEEEEECCcccCccccCCCccccEE
Confidence            4556555553    5789999999999854321111 1      11111  122334444443110 001    123589


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeeccc-ccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIG-VLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS  260 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~  260 (382)
                      +|+..+++|+.++.++..+..   +.++.++|++|.+++... .......+.+||+.+++|+.+ ++|..+  .....+.
T Consensus        82 ~~d~~~~~W~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~  156 (318)
T 2woz_A           82 QLDNVSSEWVGLPPLPSARCL---FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--YGHNVIS  156 (318)
T ss_dssp             EEETTTTEEEECSCBSSCBCS---CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE--ESCEEEE
T ss_pred             EEeCCCCcEEECCCCCccccc---cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc--cccEEEE
Confidence            999999999999877655433   578889999999998642 112345799999999999998 566554  3455667


Q ss_pred             eCCeEEEEEecCCCccCCCCCeEEEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEc-------CeEEEEeCCC
Q 045675          261 YDQSLALAVYPGLGFRSRLSNRFELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSV-------DQFFLFNPKT  332 (382)
Q Consensus       261 ~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-------~~~~~yd~~t  332 (382)
                      .+|+|++++..  ...  ....-.+|.++-.. .|+++..++.........+ .++.||+...       +.+..||+++
T Consensus       157 ~~~~iyv~GG~--~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          157 HNGMIYCLGGK--TDD--KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             ETTEEEEECCE--ESS--SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             ECCEEEEEcCC--CCC--CCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCC
Confidence            89999999885  211  11122455655443 3999876654332333333 4667777653       1688999999


Q ss_pred             CcEEEEeeeCCCCCeEEEEEEeeceeecCCCC
Q 045675          333 KRNFILPIDSGMGYSYKVFTYVDSIVAVNGEN  364 (382)
Q Consensus       333 ~~~~~v~~~~~~~~~~~~~~y~~SLv~~~~~~  364 (382)
                      ++|+.+...........+..+...|.-+.+..
T Consensus       232 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  263 (318)
T 2woz_A          232 NKWEVMTEFPQERSSISLVSLAGSLYAIGGFA  263 (318)
T ss_dssp             CCEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             CeEEECCCCCCcccceEEEEECCEEEEECCee
Confidence            99999964332222345555666666655443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.37  E-value=2.7e-11  Score=112.29  Aligned_cols=242  Identities=10%  Similarity=0.032  Sum_probs=145.3

Q ss_pred             eeccCceEEEeeCCCCceeEEEEccc--ccceeccCCCC-CccccccceeEEEEEEEeeCCCCCeEEEEEEee--c--CC
Q 045675          104 VGSCNGLLCLDVSSAFGMAFVLWNPA--TNEFKGLPTPS-LTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF--Q--AR  176 (382)
Q Consensus       104 ~~s~~Gll~~~~~~~~~~~~~V~NP~--T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~--~--~~  176 (382)
                      .+..+|.|++..+.. ...++++||.  +++|..+|++| ..+..  .   ..+  .+   .+...|++....  .  ..
T Consensus        15 ~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~--~---~~~--~~---~~~lyv~GG~~~~~~~~~~   83 (357)
T 2uvk_A           15 GAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQ--A---TSA--FI---DGNLYVFGGIGKNSEGLTQ   83 (357)
T ss_dssp             EEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBS--C---EEE--EE---TTEEEEECCEEECTTSCEE
T ss_pred             EEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCcc--c---eEE--EE---CCEEEEEcCCCCCCCccce
Confidence            334488887766532 3478999998  59999999877 33211  1   111  11   233444443311  0  11


Q ss_pred             CCCEEEEEECCCCCeeeecCCC-CeeEEeCCcceEEECceEEEEeeccccc-----------------------------
Q 045675          177 YDAIAEVYSTSTGKWKEVAAGT-GSCVIYGGQDAVAVKGVLHWIANGIGVL-----------------------------  226 (382)
Q Consensus       177 ~~~~~~vyss~t~~W~~~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~~-----------------------------  226 (382)
                      ....+++|++.+++|+.++.++ ..+..   +.++.++|++|.+++.....                             
T Consensus        84 ~~~~v~~yd~~~~~W~~~~~~~p~~r~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (357)
T 2uvk_A           84 VFNDVHKYNPKTNSWVKLMSHAPMGMAG---HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK  160 (357)
T ss_dssp             ECCCEEEEETTTTEEEECSCCCSSCCSS---EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSC
T ss_pred             eeccEEEEeCCCCcEEECCCCCCccccc---ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccc
Confidence            2358999999999999998875 33322   46677999999999864211                             


Q ss_pred             ----ccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEEC--CCCC-eeEEE
Q 045675          227 ----VNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMN--EGKG-WTRTF  298 (382)
Q Consensus       227 ----~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~--~~~~-W~~~~  298 (382)
                          .....+.+||+.+++|+.+ ++|.... ....++..+++|++++..  ...  ....-++|.++  .... |+++.
T Consensus       161 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~-~~~~~~~~~~~iyv~GG~--~~~--~~~~~~v~~~d~d~~~~~W~~~~  235 (357)
T 2uvk_A          161 AEDYFFNKFLLSFDPSTQQWSYAGESPWYGT-AGAAVVNKGDKTWLINGE--AKP--GLRTDAVFELDFTGNNLKWNKLA  235 (357)
T ss_dssp             GGGGCCCCEEEEEETTTTEEEEEEECSSCCC-BSCEEEEETTEEEEECCE--EET--TEECCCEEEEECC---CEEEECC
T ss_pred             ccccCCcccEEEEeCCCCcEEECCCCCCCCc-ccccEEEECCEEEEEeee--cCC--CcccCceEEEEecCCCCcEEecC
Confidence                0125899999999999998 5665431 236777889999999875  210  11123455543  2323 99887


Q ss_pred             EeecCC-cccceEEeeCCcEEEEEc------------------------CeEEEEeCCCCcEEEEeeeCCCCCeEEEEEE
Q 045675          299 NTAFER-IAWPVGSFRDSKIIMKSV------------------------DQFFLFNPKTKRNFILPIDSGMGYSYKVFTY  353 (382)
Q Consensus       299 ~i~~~~-~~~~~~~~~~g~l~l~~~------------------------~~~~~yd~~t~~~~~v~~~~~~~~~~~~~~y  353 (382)
                      .++... ......+..++.|++...                        ..+.+||+++++|+++...........+..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  315 (357)
T 2uvk_A          236 PVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW  315 (357)
T ss_dssp             CSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE
T ss_pred             CCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe
Confidence            664332 122223444667777664                        1578999999999999643322223444555


Q ss_pred             eeceeecCCCC
Q 045675          354 VDSIVAVNGEN  364 (382)
Q Consensus       354 ~~SLv~~~~~~  364 (382)
                      ...|.-+.+.+
T Consensus       316 ~~~i~v~GG~~  326 (357)
T 2uvk_A          316 NNSLLIIGGET  326 (357)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEeeeC
Confidence            55666555544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.18  E-value=1.5e-09  Score=109.37  Aligned_cols=217  Identities=9%  Similarity=0.098  Sum_probs=136.9

Q ss_pred             cCceEEEeeCCC--CceeEEEEcccccceeccC-CC-----CCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCC
Q 045675          107 CNGLLCLDVSSA--FGMAFVLWNPATNEFKGLP-TP-----SLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD  178 (382)
Q Consensus       107 ~~Gll~~~~~~~--~~~~~~V~NP~T~~~~~LP-~~-----~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~  178 (382)
                      .+|.|++..+.+  ....++++||.|++|..++ +.     +..+        ..++.......+...|++.........
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R--------~~hs~~~~~~~~~lyv~GG~~~~~~~~  467 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR--------MCHTFTTISRNNQLLLIGGRKAPHQGL  467 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCC--------BSCEEEEETTTTEEEEECCBSSTTCBC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccc--------cceEEEEEccCCEEEEEcCCCCCCCcc
Confidence            577777665531  2457899999999999998 52     2211        111222221122333333222111123


Q ss_pred             CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE-CceEEEEeecccccccccEEEEEECCCceeeEeC----CCCCCCC
Q 045675          179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV-KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA----MPELPTD  253 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~----~P~~~~~  253 (382)
                      ..+++|+..+++|+.++.++.++..   +.++.+ +|++|.+++.....    .+..||+.+++|+.+.    +|..+  
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~~R~~---h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r--  538 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSHTRFR---HSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNS--  538 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSBCCBS---CEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSC--
T ss_pred             ccEEEEeCCCCcEEECCCCCCCccc---ceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcc--
Confidence            5899999999999999887655544   567775 99999998865321    7999999999999985    55544  


Q ss_pred             CeeeEEEeC---CeEEEEEecCCCccCCCCCeEEEEEECCCCC-----eeEEEEee-cCCcccceEEeeCCcEEEEEc--
Q 045675          254 CYVKALSYD---QSLALAVYPGLGFRSRLSNRFELWVMNEGKG-----WTRTFNTA-FERIAWPVGSFRDSKIIMKSV--  322 (382)
Q Consensus       254 ~~~~l~~~~---g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-----W~~~~~i~-~~~~~~~~~~~~~g~l~l~~~--  322 (382)
                      .....++++   |+|+++++.... +......+.+|.+.....     |.++..++ .........+.+++.||+..+  
T Consensus       539 ~~~~a~v~~~~~~~iyv~GG~~~~-~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~  617 (695)
T 2zwa_A          539 LVSAGLEFDPVSKQGIILGGGFMD-QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS  617 (695)
T ss_dssp             CBSCEEEEETTTTEEEEECCBCTT-SSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBC
T ss_pred             cceeEEEEeCCCCEEEEECCcCCC-CCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCcc
Confidence            233334444   899999886111 011245677777776631     88887754 222233344444377877664  


Q ss_pred             --------CeEEEEeCCCCcEEEEeee
Q 045675          323 --------DQFFLFNPKTKRNFILPID  341 (382)
Q Consensus       323 --------~~~~~yd~~t~~~~~v~~~  341 (382)
                              +.+..||+++++|+.+.+.
T Consensus       618 ~~~~~~~~~~v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          618 PSGLFDRTNSIISLDPLSETLTSIPIS  644 (695)
T ss_dssp             SSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred             CCCCCCCCCeEEEEECCCCeEEEeecc
Confidence                    1699999999999976553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.18  E-value=2.6e-09  Score=98.89  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=133.2

Q ss_pred             eeeccCceEEEeeCC-C-------CceeEEEEcccccceeccCCCC-CccccccceeEEEEEEEeeCCCCCeEEEEEEee
Q 045675          103 IVGSCNGLLCLDVSS-A-------FGMAFVLWNPATNEFKGLPTPS-LTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNF  173 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~-~-------~~~~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~  173 (382)
                      ..+..+|.|++..+. .       ....++++||.|++|..+++++ .....      .  ....  ..+...|++....
T Consensus        60 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~------~--~~~~--~~~~iyv~GG~~~  129 (357)
T 2uvk_A           60 TSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG------H--VTFV--HNGKAYVTGGVNQ  129 (357)
T ss_dssp             EEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS------E--EEEE--ETTEEEEEECCCH
T ss_pred             eEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc------c--eEEE--ECCEEEEEeCcCC
Confidence            344557887766543 1       1356899999999999998876 32111      1  1111  1233333333221


Q ss_pred             cC---------------------------------CCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEe
Q 045675          174 QA---------------------------------RYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIA  220 (382)
Q Consensus       174 ~~---------------------------------~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~  220 (382)
                      ..                                 .....+++|+..+++|+.++.++..... . +.++.++|.+|.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~-~-~~~~~~~~~iyv~G  207 (357)
T 2uvk_A          130 NIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTA-G-AAVVNKGDKTWLIN  207 (357)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCB-S-CEEEEETTEEEEEC
T ss_pred             CcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcc-c-ccEEEECCEEEEEe
Confidence            00                                 1235899999999999999776532211 1 47888999999998


Q ss_pred             ecccccccccEEEEEEC--CCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCcc--------------CCCCCeE
Q 045675          221 NGIGVLVNEKFVVSYDM--NLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFR--------------SRLSNRF  283 (382)
Q Consensus       221 ~~~~~~~~~~~i~~fD~--~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~--------------~~~~~~~  283 (382)
                      +..........+..||+  .+++|+.+ .+|.........++..+|+|++++..  ...              ......-
T Consensus       208 G~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~g~~~~~~~~~~~~  285 (357)
T 2uvk_A          208 GEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGA--GFKGSRENYQNGKNYAHEGLKKSY  285 (357)
T ss_dssp             CEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCE--ECTTHHHHHHTTCSSTTTTCCCEE
T ss_pred             eecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCc--cccCCcccccccceecccccccee
Confidence            75422112346777876  89999998 44443322345578899999999885  110              0011123


Q ss_pred             EEEEECCCC-CeeEEEEeecCCcccceEEeeCCcEEEEEcC--------eEEEEeCCCCcEEEEee
Q 045675          284 ELWVMNEGK-GWTRTFNTAFERIAWPVGSFRDSKIIMKSVD--------QFFLFNPKTKRNFILPI  340 (382)
Q Consensus       284 ~iW~l~~~~-~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--------~~~~yd~~t~~~~~v~~  340 (382)
                      .+|.++-.. .|+++..++..... ..++..++.|++....        .++.|++++++|.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAY-GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBS-SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCccc-ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            455555432 49999877654433 3334446777766641        68899999999988753

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.14  E-value=2.6e-11  Score=79.07  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHH
Q 045675            5 DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVT   50 (382)
Q Consensus         5 ~~~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~   50 (382)
                      +...+..||+|++.+||++||++++.++++|||+|+.++.++.|-+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            4567899999999999999999999999999999999999988743

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.08  E-value=7.2e-11  Score=104.49  Aligned_cols=51  Identities=16%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             CCCCCCCCHHHHHHHHhcCChhhhh-hhhccchhhHhhcCCHHHHHHHHccC
Q 045675            6 TTTVSSVPLVIITDILLQLPIKSIV-RFKCVSKSWLLLIKSSEFVTAHLNCS   56 (382)
Q Consensus         6 ~~~~~~LP~dll~~IL~rLp~~sl~-r~r~VcK~W~~li~sp~F~~~~~~~~   56 (382)
                      ...+..||+||+.+||+|||+++|+ ||++|||+|+.++++|.|.+.++.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            3577899999999999999999999 99999999999999999999988775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.97  E-value=3.4e-06  Score=80.24  Aligned_cols=43  Identities=23%  Similarity=0.416  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCC-HHHHHH
Q 045675            9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKS-SEFVTA   51 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~s-p~F~~~   51 (382)
                      +..||+|++.+||+.||+++|.++.+|||+|+.++.+ +..-+.
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~   58 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   58 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4579999999999999999999999999999999998 665444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.85  E-value=3.6e-08  Score=98.90  Aligned_cols=217  Identities=12%  Similarity=0.011  Sum_probs=129.8

Q ss_pred             CceEEEeeCCCC---------ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCC
Q 045675          108 NGLLCLDVSSAF---------GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYD  178 (382)
Q Consensus       108 ~Gll~~~~~~~~---------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~  178 (382)
                      +|.|++..+...         ...+.++||.|++|..++.++..+..      ...+..+.. .+.  ++.+...   ..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~------~~~~~~~~~-~g~--lyv~GG~---~~  264 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM------FCPGISMDG-NGQ--IVVTGGN---DA  264 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC------SSCEEEECT-TSC--EEEECSS---ST
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC------ccccccCCC-CCC--EEEeCCC---CC
Confidence            788877643210         23688999999999998876543221      111222221 122  3333221   22


Q ss_pred             CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE-CceEEEEeecccccccccEEEEEECCCceeeEeC------CCCCC
Q 045675          179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV-KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA------MPELP  251 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~------~P~~~  251 (382)
                      ..+++|++.+++|.+++.++..+..   +.++.+ +|++|.+++..........+..||+.+++|+.++      +|...
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~---~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~  341 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGY---QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD  341 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSS---CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred             CceEEecCcCCceeECCCCCccccc---cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence            3799999999999999877554433   466777 9999999984322113357899999999999862      33221


Q ss_pred             C-------CC-----------------------------------------------eeeEEE----eCCeEEEEEecCC
Q 045675          252 T-------DC-----------------------------------------------YVKALS----YDQSLALAVYPGL  273 (382)
Q Consensus       252 ~-------~~-----------------------------------------------~~~l~~----~~g~L~~~~~~~~  273 (382)
                      .       +.                                               ....++    .+|+|++++....
T Consensus       342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~  421 (656)
T 1k3i_A          342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  421 (656)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence            0       00                                               011222    3789998887511


Q ss_pred             CccCCCCC-eEEEEEECCCC-CeeEEE--EeecCCcccceEEeeCCcEEEEEc-------------CeEEEEeCCCCcEE
Q 045675          274 GFRSRLSN-RFELWVMNEGK-GWTRTF--NTAFERIAWPVGSFRDSKIIMKSV-------------DQFFLFNPKTKRNF  336 (382)
Q Consensus       274 ~~~~~~~~-~~~iW~l~~~~-~W~~~~--~i~~~~~~~~~~~~~~g~l~l~~~-------------~~~~~yd~~t~~~~  336 (382)
                      ..+..... ...|+..+... .|.++.  .|+.........+..+|.||+...             ..+.+||+++++|+
T Consensus       422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~  501 (656)
T 1k3i_A          422 YQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY  501 (656)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred             CCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence            10001112 22455555432 398876  565544334444445778877664             16899999999999


Q ss_pred             EEe
Q 045675          337 ILP  339 (382)
Q Consensus       337 ~v~  339 (382)
                      .+.
T Consensus       502 ~~~  504 (656)
T 1k3i_A          502 KQN  504 (656)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            885

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.83  E-value=3.9e-06  Score=79.55  Aligned_cols=281  Identities=12%  Similarity=0.120  Sum_probs=142.1

Q ss_pred             CCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHccCCCc-eeeEEE--eecc-CCCCceeeeeecC
Q 045675            7 TTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIRN-HSLIVR--YYNH-AFGNDSGLMLLRS   82 (382)
Q Consensus         7 ~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~   82 (382)
                      -.+..||+|++..||+.|++++|.++.+|||+|+.++.++.+-+......... ......  .... .....|.......
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~   96 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhh
Confidence            35678999999999999999999999999999999999998877655432111 000000  0000 0000000000000


Q ss_pred             ---CCcce--eecCCC-CCCCCCC-CeeeeccCceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEE
Q 045675           83 ---DLKQH--QVELPP-LEGLSTF-PKIVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSL  154 (382)
Q Consensus        83 ---~~~~~--~~~~p~-~~~~~~~-~~~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~  154 (382)
                         ...+.  ...... ....... ...+...+.+|+....   ...+.|||..+++... ++....          ...
T Consensus        97 ~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~----------~v~  163 (445)
T 2ovr_B           97 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSD---DNTLKVWSAVTGKCLRTLVGHTG----------GVW  163 (445)
T ss_dssp             HHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEECCCCSS----------CEE
T ss_pred             hhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEEC---CCcEEEEECCCCcEEEEEcCCCC----------CEE
Confidence               00000  000000 0011111 1223334555554444   5689999998887543 332111          122


Q ss_pred             EEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEE
Q 045675          155 GFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVS  234 (382)
Q Consensus       155 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~  234 (382)
                      .+.+++   .+-+.+  .    .+..+.+++..++.-...-.... ...    .++..+|.....+..+      ..|..
T Consensus       164 ~~~~~~---~~l~s~--~----~dg~i~vwd~~~~~~~~~~~~h~-~~v----~~~~~~~~~l~s~s~d------g~i~~  223 (445)
T 2ovr_B          164 SSQMRD---NIIISG--S----TDRTLKVWNAETGECIHTLYGHT-STV----RCMHLHEKRVVSGSRD------ATLRV  223 (445)
T ss_dssp             EEEEET---TEEEEE--E----TTSCEEEEETTTTEEEEEECCCS-SCE----EEEEEETTEEEEEETT------SEEEE
T ss_pred             EEEecC---CEEEEE--e----CCCeEEEEECCcCcEEEEECCCC-CcE----EEEEecCCEEEEEeCC------CEEEE
Confidence            444442   332222  1    33578899988763221111100 111    2334445544444333      48899


Q ss_pred             EECCCceeeE-eCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecC-CcccceEEe
Q 045675          235 YDMNLELFWR-TAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE-RIAWPVGSF  312 (382)
Q Consensus       235 fD~~~~~~~~-i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~-~~~~~~~~~  312 (382)
                      +|+.+.+... +....    ........+|.+.++...        ...+.+|.+...   ..+..+... .....+.+ 
T Consensus       224 wd~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~--------dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~-  287 (445)
T 2ovr_B          224 WDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAY--------DFMVKVWDPETE---TCLHTLQGHTNRVYSLQF-  287 (445)
T ss_dssp             EESSSCCEEEEEECCS----SCEEEEEECSSCEEEEET--------TSCEEEEEGGGT---EEEEEECCCSSCEEEEEE-
T ss_pred             EECCCCcEEEEEcCCc----ccEEEEEECCCEEEEEcC--------CCEEEEEECCCC---cEeEEecCCCCceEEEEE-
Confidence            9998765433 22211    122223347776666654        678899987765   334444311 11222222 


Q ss_pred             eCCc-EEEEEcC-eEEEEeCCCCcEEE
Q 045675          313 RDSK-IIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       313 ~~g~-l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                       ++. ++....+ .+.+||+++++...
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~~~  313 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNCIH  313 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence             455 4444444 89999998887543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.71  E-value=2.3e-06  Score=80.96  Aligned_cols=45  Identities=22%  Similarity=0.357  Sum_probs=39.9

Q ss_pred             CCCCCHH----HHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHH
Q 045675            9 VSSVPLV----IITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHL   53 (382)
Q Consensus         9 ~~~LP~d----ll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~~   53 (382)
                      +..||+|    |+..||+.|++++|.++.+|||+|+.++.++.+-+...
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~   59 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            4569999    99999999999999999999999999999877666543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.64  E-value=6.9e-07  Score=89.98  Aligned_cols=174  Identities=10%  Similarity=-0.035  Sum_probs=115.2

Q ss_pred             CCCEEEEEECCCCCeeeec-C-----CCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEe-CC
Q 045675          177 YDAIAEVYSTSTGKWKEVA-A-----GTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AM  247 (382)
Q Consensus       177 ~~~~~~vyss~t~~W~~~~-~-----~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~  247 (382)
                      ....+.+|+..+++|+.++ .     ++..+..   +.++.+  +|.+|.+++..........+..||+.+++|+.+ ++
T Consensus       410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~---hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~  486 (695)
T 2zwa_A          410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC---HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL  486 (695)
T ss_dssp             BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS---CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC
T ss_pred             CcCcEEEEECCCCeEEEeccCCCCCCCCccccc---eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC
Confidence            3457999999999999988 4     2333333   688888  999999998654322245689999999999998 56


Q ss_pred             CCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEE---eecCCcccceEEee-C-CcEEEE
Q 045675          248 PELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFN---TAFERIAWPVGSFR-D-SKIIMK  320 (382)
Q Consensus       248 P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~---i~~~~~~~~~~~~~-~-g~l~l~  320 (382)
                      |..+  .....+.. +|+|+++++.  .     ... .+|.++-... |+.+..   ++.........+.+ + +.||+.
T Consensus       487 p~~R--~~h~~~~~~~~~iyv~GG~--~-----~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          487 SHTR--FRHSACSLPDGNVLILGGV--T-----EGP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             SBCC--BSCEEEECTTSCEEEECCB--C-----SSC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CCCc--ccceEEEEcCCEEEEECCC--C-----CCC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            6554  44556664 9999999987  3     111 6677665433 998865   44333333323323 2 557766


Q ss_pred             Ec---------CeEEEEeCCCCc------EEEEeee-CCCCCeEEEEEEe-eceeecCCC
Q 045675          321 SV---------DQFFLFNPKTKR------NFILPID-SGMGYSYKVFTYV-DSIVAVNGE  363 (382)
Q Consensus       321 ~~---------~~~~~yd~~t~~------~~~v~~~-~~~~~~~~~~~y~-~SLv~~~~~  363 (382)
                      .+         +.+..||+++++      |+.+... ....+...+..+. ..|.-+++.
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~  616 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT  616 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence            53         169999999999      8888542 1122234555666 566666553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.54  E-value=3e-07  Score=92.22  Aligned_cols=195  Identities=8%  Similarity=0.015  Sum_probs=114.0

Q ss_pred             EEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC-C----CCCEEEEEECCCCCeeeecCC
Q 045675          123 FVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA-R----YDAIAEVYSTSTGKWKEVAAG  197 (382)
Q Consensus       123 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~----~~~~~~vyss~t~~W~~~~~~  197 (382)
                      +..+||.+++|..++++|....          ...+.+..+...|++...... .    ....+.+|+..+++|+....+
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~~----------~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~  237 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVPA----------AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT  237 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCCS----------EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE
T ss_pred             cccCCCCCCeeeeeccCCCCce----------eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc
Confidence            3446899999998877765321          122233233333333322100 0    113789999999999988766


Q ss_pred             CCeeEEeCCcc-eEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEe-CCeEEEEEecCCC
Q 045675          198 TGSCVIYGGQD-AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSY-DQSLALAVYPGLG  274 (382)
Q Consensus       198 ~~~~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~  274 (382)
                      +..... .... ++..+|++|.+++...     ..+..||+.+++|..+ ++|..+  .....+.+ +|+|++++..  .
T Consensus       238 ~~~~~~-~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R--~~~s~~~~~dg~iyv~GG~--~  307 (656)
T 1k3i_A          238 VTKHDM-FCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR--GYQSSATMSDGRVFTIGGS--W  307 (656)
T ss_dssp             ECSCCC-SSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC--SSCEEEECTTSCEEEECCC--C
T ss_pred             CCCCCC-ccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccc--cccceEEecCCeEEEEeCc--c
Confidence            332211 1112 3346899999988652     3699999999999998 556554  45667777 9999999984  2


Q ss_pred             ccCCCCCeEEEEEECCCCCeeEEEE-----eecCCc-------ccceEE-eeCCcEEEEEc-CeEEEEeCCCCcEEEE
Q 045675          275 FRSRLSNRFELWVMNEGKGWTRTFN-----TAFERI-------AWPVGS-FRDSKIIMKSV-DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~~W~~~~~-----i~~~~~-------~~~~~~-~~~g~l~l~~~-~~~~~yd~~t~~~~~v  338 (382)
                      .+......+++|-.... .|+.+..     ++....       .....+ ..+|.++.... +.+..||+++++|...
T Consensus       308 ~~~~~~~~~e~yd~~t~-~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~  384 (656)
T 1k3i_A          308 SGGVFEKNGEVYSPSSK-TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS  384 (656)
T ss_dssp             CSSSCCCCEEEEETTTT-EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred             cCCcccccceEeCCCCC-cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeec
Confidence            21123456677666543 5998632     211110       001111 11233332222 2789999999997754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.9e-06  Score=75.40  Aligned_cols=51  Identities=14%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHccCCC
Q 045675            8 TVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNCSIR   58 (382)
Q Consensus         8 ~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~~~~~~~   58 (382)
                      .+..||+|++..||+.|++++|.|+.+|||+||.+.+++..-+.++.+..+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~   54 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP   54 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGG
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCC
Confidence            466899999999999999999999999999999999999999988887643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.61  E-value=2.6e-05  Score=71.02  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             CCCCCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 045675            5 DTTTVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF   48 (382)
Q Consensus         5 ~~~~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F   48 (382)
                      +...|..||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            34678999999999999999999999999999999999876653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.02  E-value=0.00026  Score=69.64  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             CCCCCCCHHHHHHHHhcCC-hhhhhhhhccchhhHhh
Q 045675            7 TTVSSVPLVIITDILLQLP-IKSIVRFKCVSKSWLLL   42 (382)
Q Consensus         7 ~~~~~LP~dll~~IL~rLp-~~sl~r~r~VcK~W~~l   42 (382)
                      -.++.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4578999999999999999 99999999999999988

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.61  E-value=0.16  Score=43.99  Aligned_cols=191  Identities=8%  Similarity=-0.011  Sum_probs=98.2

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +.-..+|.|.+....  ...++++|| +++...+..+....        ...++.+|+... ..+  . .   .....+.
T Consensus       104 i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~~~--------~~~~i~~~~~g~-l~v--~-~---~~~~~i~  165 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNKGS--------YPSFITLGSDNA-LWF--T-E---NQNNAIG  165 (299)
T ss_dssp             EEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSSTTC--------CEEEEEECTTSC-EEE--E-E---TTTTEEE
T ss_pred             eEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCCCC--------CCceEEEcCCCC-EEE--E-e---CCCCEEE
Confidence            333446777665532  347889999 77665543221110        133666776542 211  1 1   1224677


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS  260 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~  260 (382)
                      +|+. ++.............    ..++.+  +|.+|+.....      ..|..||+ +.++..+.+|.... ....+..
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~~  232 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASG----PVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPNA-RPHAITA  232 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCC----EEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTC-CEEEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCc----ceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCCC-CceeEEE
Confidence            7877 666655322211000    122333  57876544322      48999999 77777776653221 2334444


Q ss_pred             -eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecC-CcccceEEeeCCcEEEEEc-CeEEEEeCCCCcEE
Q 045675          261 -YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE-RIAWPVGSFRDSKIIMKSV-DQFFLFNPKTKRNF  336 (382)
Q Consensus       261 -~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~-~~~~~~~~~~~g~l~l~~~-~~~~~yd~~t~~~~  336 (382)
                       -+|.|++....        ...+.+|..  . +=...+.++.. .....+.+ .+|.|++... +.+..||+++++++
T Consensus       233 ~~~g~l~v~~~~--------~~~i~~~d~--~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~~~  299 (299)
T 2z2n_A          233 GAGIDLWFTEWG--------ANKIGRLTS--N-NIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDNME  299 (299)
T ss_dssp             CSTTCEEEEETT--------TTEEEEEET--T-TEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC-----
T ss_pred             CCCCCEEEeccC--------CceEEEECC--C-CceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcccCC
Confidence             36788776643        455665554  2 31112222211 11333445 6778888874 49999999887653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.58  E-value=0.00078  Score=66.19  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=31.8

Q ss_pred             CCCCCHHHHHHHHhcC-ChhhhhhhhccchhhHhh
Q 045675            9 VSSVPLVIITDILLQL-PIKSIVRFKCVSKSWLLL   42 (382)
Q Consensus         9 ~~~LP~dll~~IL~rL-p~~sl~r~r~VcK~W~~l   42 (382)
                      ...||||++.+||++| |.+++.+++.|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3479999999999999 899999999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.24  E-value=0.44  Score=43.19  Aligned_cols=188  Identities=10%  Similarity=-0.000  Sum_probs=98.4

Q ss_pred             eEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC
Q 045675          110 LLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG  189 (382)
Q Consensus       110 ll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~  189 (382)
                      ++++....  ...+.+||..+++....-....          ...++.+++... +-++.. .    .+..+.+++..++
T Consensus         3 ~l~vs~~~--d~~v~v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~-~l~~~~-~----~d~~i~v~d~~~~   64 (391)
T 1l0q_A            3 FAYIANSE--SDNISVIDVTSNKVTATIPVGS----------NPMGAVISPDGT-KVYVAN-A----HSNDVSIIDTATN   64 (391)
T ss_dssp             EEEEEETT--TTEEEEEETTTTEEEEEEECSS----------SEEEEEECTTSS-EEEEEE-G----GGTEEEEEETTTT
T ss_pred             EEEEEcCC--CCEEEEEECCCCeEEEEeecCC----------CcceEEECCCCC-EEEEEC-C----CCCeEEEEECCCC
Confidence            44444443  5589999999887654221111          123566666543 222221 1    2348899998877


Q ss_pred             CeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE-eCCeEEE
Q 045675          190 KWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS-YDQSLAL  267 (382)
Q Consensus       190 ~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~-~~g~L~~  267 (382)
                      .-...-.... ...   .-...-+|...++++..     ...|..+|+.+.+.... ....    ....+.. -+|+..+
T Consensus        65 ~~~~~~~~~~-~v~---~~~~spdg~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           65 NVIATVPAGS-SPQ---GVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEEECSS-SEE---EEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEE
T ss_pred             eEEEEEECCC-Ccc---ceEECCCCCEEEEEECC-----CCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEE
Confidence            5432211111 111   01122246544444332     24799999998766433 3222    2233333 3566443


Q ss_pred             EEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeCCCCcEEEE
Q 045675          268 AVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNPKTKRNFIL  338 (382)
Q Consensus       268 ~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~~t~~~~~v  338 (382)
                      +...       ....+.+|.+...   ..+..+....-...+.+..+|. |++....  .+..||+++++....
T Consensus       132 ~~~~-------~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  195 (391)
T 1l0q_A          132 VTNN-------GDKTVSVINTVTK---AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT  195 (391)
T ss_dssp             EEET-------TTTEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeC-------CCCEEEEEECCCC---cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            3443       2678999987765   2333333332234455566676 4455433  899999998875543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.10  E-value=0.73  Score=41.69  Aligned_cols=190  Identities=12%  Similarity=0.027  Sum_probs=100.2

Q ss_pred             ceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC
Q 045675          109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST  188 (382)
Q Consensus       109 Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t  188 (382)
                      ..|++....  ...+.+||+.+++....-....          ...++.+++..+ +.++..     .....+.+|+..+
T Consensus        86 ~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~~~----------~~~~~~~s~dg~-~l~~~~-----~~~~~v~~~d~~~  147 (391)
T 1l0q_A           86 KQVYVTNMA--SSTLSVIDTTSNTVAGTVKTGK----------SPLGLALSPDGK-KLYVTN-----NGDKTVSVINTVT  147 (391)
T ss_dssp             SEEEEEETT--TTEEEEEETTTTEEEEEEECSS----------SEEEEEECTTSS-EEEEEE-----TTTTEEEEEETTT
T ss_pred             CEEEEEECC--CCEEEEEECCCCeEEEEEeCCC----------CcceEEECCCCC-EEEEEe-----CCCCEEEEEECCC
Confidence            344444432  4589999999987654322221          123566766543 322221     1345899999888


Q ss_pred             CCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE-eCCeEE
Q 045675          189 GKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS-YDQSLA  266 (382)
Q Consensus       189 ~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~-~~g~L~  266 (382)
                      ++....-.... ...   .-...-+|...++....     ...|..+|+.+.+.... ....    ....+.. -+|+..
T Consensus       148 ~~~~~~~~~~~-~~~---~~~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~l  214 (391)
T 1l0q_A          148 KAVINTVSVGR-SPK---GIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVKVEA----APSGIAVNPEGTKA  214 (391)
T ss_dssp             TEEEEEEECCS-SEE---EEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSS----EEEEEEECTTSSEE
T ss_pred             CcEEEEEecCC-Ccc---eEEECCCCCEEEEEeCC-----CCEEEEEECCCCeEEEEEecCC----CccceEECCCCCEE
Confidence            75443221110 001   11222356544444433     24799999988765433 2211    1222332 255544


Q ss_pred             EEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEc-C-eEEEEeCCCCcEEE
Q 045675          267 LAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSV-D-QFFLFNPKTKRNFI  337 (382)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~-~-~~~~yd~~t~~~~~  337 (382)
                      ++...  .   .....+.+|.++..   ..+..++...-...+.+..+|+ |++... + .+.+||+++++...
T Consensus       215 ~~~~~--~---~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~  280 (391)
T 1l0q_A          215 YVTNV--D---KYFNTVSMIDTGTN---KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA  280 (391)
T ss_dssp             EEEEE--C---SSCCEEEEEETTTT---EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEec--C---cCCCcEEEEECCCC---eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence            43332  0   02678889988765   4445554433233355566776 545544 3 89999999987654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.82  E-value=0.88  Score=41.80  Aligned_cols=196  Identities=12%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      +.+|.+++....  ...+.+||+.+++... ++....          ...++.+++..+ +.++..     .....+.+|
T Consensus       178 ~~~~~~~~s~~~--d~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~l~~~~-----~~~~~i~~~  239 (433)
T 3bws_A          178 PEHNELWVSQMQ--ANAVHVFDLKTLAYKATVDLTGK----------WSKILLYDPIRD-LVYCSN-----WISEDISVI  239 (433)
T ss_dssp             GGGTEEEEEEGG--GTEEEEEETTTCCEEEEEECSSS----------SEEEEEEETTTT-EEEEEE-----TTTTEEEEE
T ss_pred             cCCCEEEEEECC--CCEEEEEECCCceEEEEEcCCCC----------CeeEEEEcCCCC-EEEEEe-----cCCCcEEEE
Confidence            345655554442  4578999988866443 332111          133566777543 222221     123479999


Q ss_pred             ECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccc--cccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE-
Q 045675          185 STSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLV--NEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS-  260 (382)
Q Consensus       185 ss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~--~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~-  260 (382)
                      +..++.....-..... ..   .-.+.-+|...+.+..+....  ....|..+|+.+.+.... ..+.    ....+.. 
T Consensus       240 d~~~~~~~~~~~~~~~-~~---~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~~~~  311 (433)
T 3bws_A          240 DRKTKLEIRKTDKIGL-PR---GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG----NKRHIVSG  311 (433)
T ss_dssp             ETTTTEEEEECCCCSE-EE---EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE----CEEEEEEC
T ss_pred             ECCCCcEEEEecCCCC-ce---EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC----CcceEEEC
Confidence            9887754332221111 11   112223565555555321100  134888999987755433 2121    1122222 


Q ss_pred             eCCe-EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC---------------
Q 045675          261 YDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD---------------  323 (382)
Q Consensus       261 ~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~---------------  323 (382)
                      -+|+ |++....        ...+.+|.++..   ..+..++...-...+.+..+|. |++...+               
T Consensus       312 ~~g~~l~~~~~~--------~~~v~v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d  380 (433)
T 3bws_A          312 NTENKIYVSDMC--------CSKIEVYDLKEK---KVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL  380 (433)
T ss_dssp             SSTTEEEEEETT--------TTEEEEEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred             CCCCEEEEEecC--------CCEEEEEECCCC---cEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence            2554 5554443        678999988754   3444454333344566666776 5555542               


Q ss_pred             -eEEEEeCCCCcEEEE
Q 045675          324 -QFFLFNPKTKRNFIL  338 (382)
Q Consensus       324 -~~~~yd~~t~~~~~v  338 (382)
                       .+..||+++++....
T Consensus       381 g~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          381 GKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             CEEEEEETTTTEEEEE
T ss_pred             eEEEEEECCCCcEEEE
Confidence             799999998875543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.72  E-value=1  Score=40.04  Aligned_cols=198  Identities=9%  Similarity=0.000  Sum_probs=108.0

Q ss_pred             CceEEEeeCC-CC-ceeEEEEcccccceec-cCCC--CCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          108 NGLLCLDVSS-AF-GMAFVLWNPATNEFKG-LPTP--SLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       108 ~Gll~~~~~~-~~-~~~~~V~NP~T~~~~~-LP~~--~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +|+..+..+. +. ...+.++||.|++... ++..  .....   .   ...++.++.   ....+.. .    ....+.
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg---~---~~~~i~~~~---~~lyv~~-~----~~~~v~   67 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLG---D---VAQSMVIRD---GIGWIVV-N----NSHVIF   67 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCB---S---CEEEEEEET---TEEEEEE-G----GGTEEE
T ss_pred             CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccC---c---cceEEEEEC---CEEEEEE-c----CCCEEE
Confidence            4555555441 11 4589999999998754 2110  00000   0   112344442   2222221 1    234799


Q ss_pred             EEECCCCCe-eeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCC--CCeeeE
Q 045675          183 VYSTSTGKW-KEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPT--DCYVKA  258 (382)
Q Consensus       183 vyss~t~~W-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~--~~~~~l  258 (382)
                      +++..+++- ++++....+.     .-++.-+|.+|......      ..|.++|+.+.+.. .++.+....  .....+
T Consensus        68 viD~~t~~~~~~i~~~~~p~-----~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i  136 (328)
T 3dsm_A           68 AIDINTFKEVGRITGFTSPR-----YIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMESGSTEQM  136 (328)
T ss_dssp             EEETTTCCEEEEEECCSSEE-----EEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCE
T ss_pred             EEECcccEEEEEcCCCCCCc-----EEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccCCCcceE
Confidence            999988765 2332221111     11223688888776332      48999999998765 456554110  012234


Q ss_pred             EEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEc------------CeEE
Q 045675          259 LSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSV------------DQFF  326 (382)
Q Consensus       259 ~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~------------~~~~  326 (382)
                      +..+|+|++....       ....+.++-++..   ..+.+++......-+.+..+|.+++...            ..++
T Consensus       137 ~~~~~~lyv~~~~-------~~~~v~viD~~t~---~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          137 VQYGKYVYVNCWS-------YQNRILKIDTETD---KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             EEETTEEEEEECT-------TCCEEEEEETTTT---EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             EEECCEEEEEcCC-------CCCEEEEEECCCC---eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEE
Confidence            4478899888652       1456666655544   3334454433233455666788877764            3699


Q ss_pred             EEeCCCCcEEE-Eee
Q 045675          327 LFNPKTKRNFI-LPI  340 (382)
Q Consensus       327 ~yd~~t~~~~~-v~~  340 (382)
                      .+|++++++.+ +.+
T Consensus       207 ~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          207 RIDAETFTVEKQFKF  221 (328)
T ss_dssp             EEETTTTEEEEEEEC
T ss_pred             EEECCCCeEEEEEec
Confidence            99999998763 444

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.47  E-value=1.4  Score=39.76  Aligned_cols=184  Identities=11%  Similarity=0.052  Sum_probs=98.8

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.|||..+++....-.....     ..  ....+.+.|..+.+-+.+-      .+..+.+++..+...+.......
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h-----~~--~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~  161 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGP-----GD--AITGMKFNQFNTNQLFVSS------IRGATTLRDFSGSVIQVFAKTDS  161 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCST-----TC--BEEEEEEETTEEEEEEEEE------TTTEEEEEETTSCEEEEEECCCC
T ss_pred             CCeEEEEeCCCcccceeeecCCc-----CC--ceeEEEeCCCCCCEEEEEe------CCCEEEEEECCCCceEEEeccCC
Confidence            44789999988776554322111     11  2345666664333333332      33578999988766555443311


Q ss_pred             -eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCe-EEEEEecCCCcc
Q 045675          200 -SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQS-LALAVYPGLGFR  276 (382)
Q Consensus       200 -~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~-L~~~~~~~~~~~  276 (382)
                       .... . .-...-+|.....+..+      ..|..+|+..+....+.....   ....+... +|. +.+....     
T Consensus       162 ~~~~v-~-~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~-----  225 (383)
T 3ei3_B          162 WDYWY-C-CVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA---KVTHAEFNPRCDWLMATSSV-----  225 (383)
T ss_dssp             SSCCE-E-EEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS---CEEEEEECSSCTTEEEEEET-----
T ss_pred             CCCCe-E-EEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC---cEEEEEECCCCCCEEEEEeC-----
Confidence             0111 0 12223355555444433      488899997665555543221   22333322 455 5554443     


Q ss_pred             CCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEee-CCcEEEEE-cC-eEEEEeCCCCcE
Q 045675          277 SRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFR-DSKIIMKS-VD-QFFLFNPKTKRN  335 (382)
Q Consensus       277 ~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~-~g~l~l~~-~~-~~~~yd~~t~~~  335 (382)
                         ...+.+|.+..... -..+..+........+.+.. +|..++.. .+ .+.+||+++.+.
T Consensus       226 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          226 ---DATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             ---TSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             ---CCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence               67899999886422 23344444333355566666 77755444 34 899999988653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.35  E-value=2.8  Score=42.49  Aligned_cols=175  Identities=15%  Similarity=0.068  Sum_probs=92.0

Q ss_pred             EEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccccE
Q 045675          155 GFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKF  231 (382)
Q Consensus       155 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~  231 (382)
                      |+++|...+...+.-      .....++++++.+..-+.+.......     ..++.+   +|.|||.....     ...
T Consensus       475 GLAvD~~~~~LY~tD------~~~~~I~v~~ldG~~~~~l~~~~l~~-----P~gIaVDp~~g~LYwtD~g~-----~~~  538 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTD------SVLGTVSVADTKGVKRKTLFRENGSK-----PRAIVVDPVHGFMYWTDWGT-----PAK  538 (791)
T ss_dssp             EEEEETTTTEEEEEE------TTTTEEEEEETTSSSEEEEEECTTCC-----EEEEEEETTTTEEEEEECSS-----SCE
T ss_pred             eeeeeecCCcEEEEe------cCCCeEEEEeCCCCeEEEEEeCCCCC-----cceEEEecCCCCEEEecCCC-----CCe
Confidence            677777654322221      13347888888765544432211111     134444   58999987543     248


Q ss_pred             EEEEECCCceeeEeCCCCCCCCCeeeEEEe--CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccc
Q 045675          232 VVSYDMNLELFWRTAMPELPTDCYVKALSY--DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWP  308 (382)
Q Consensus       232 i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~  308 (382)
                      |.++++....-+.+.. ... .....|++.  +|+||++...        ...|++..++..  -.++. +.. ..+..|
T Consensus       539 I~~~~~dG~~~~~lv~-~~l-~~P~GLavD~~~~~LYwaD~~--------~~~I~~~d~dG~--~~~~v-~~~~~~l~~P  605 (791)
T 3m0c_C          539 IKKGGLNGVDIYSLVT-ENI-QWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGG--NRKTI-LEDEKRLAHP  605 (791)
T ss_dssp             EEEEETTSCCEEEEEC-SSC-SCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSC--SCEEE-EECTTTTSSE
T ss_pred             EEEEecCCCceEEEEe-CCC-CCceEEEEecCCCeEEEEeCC--------CCcEEEEecCCC--ceEEE-ecCCCccCCC
Confidence            9999998765544421 111 133445554  7899998764        444444444333  12221 221 234567


Q ss_pred             eEEeeCC-cEEEEEcC--eEEEEeCCCCcEEEEeeeCCCCCeEEEEEEeeceee
Q 045675          309 VGSFRDS-KIIMKSVD--QFFLFNPKTKRNFILPIDSGMGYSYKVFTYVDSIVA  359 (382)
Q Consensus       309 ~~~~~~g-~l~l~~~~--~~~~yd~~t~~~~~v~~~~~~~~~~~~~~y~~SLv~  359 (382)
                      +++.-.+ .||+....  .|..+|..+++-..+-..+ ...-+.+.+|.+..-|
T Consensus       606 ~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~-l~~P~~i~v~h~~~Qp  658 (791)
T 3m0c_C          606 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN-LLSPEDMVLFHNLTQP  658 (791)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECS-CSCCCCEEEESGGGSC
T ss_pred             CEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecC-CCCceeEeeeccccCC
Confidence            6665433 46666654  8999998777533322211 1112445566665544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.20  E-value=1.3  Score=37.79  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             ceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEE
Q 045675          208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELW  286 (382)
Q Consensus       208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW  286 (382)
                      .-.+.+|.+|.-++..+    ...|..+|+.+.+. ..+++|...  ....++..+++|+++...        ...+.++
T Consensus        25 GL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~--fgeGi~~~~~~ly~ltw~--------~~~v~v~   90 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPY--FGAGIVAWRDRLIQLTWR--------NHEGFVY   90 (243)
T ss_dssp             EEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESS--------SSEEEEE
T ss_pred             cEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCc--ceeEEEEeCCEEEEEEee--------CCEEEEE
Confidence            44456677777655542    24899999998766 556777654  345567779999998654        4555544


Q ss_pred             EECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcE-EEEee
Q 045675          287 VMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRN-FILPI  340 (382)
Q Consensus       287 ~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~-~~v~~  340 (382)
                      -.+..   .++.+++...  .+.++..++. |++.... ++..+|++|.+. +.+.+
T Consensus        91 D~~tl---~~~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           91 DLATL---TPRARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             ETTTT---EEEEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ECCcC---cEEEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            44443   6777777654  3455555555 6666554 999999999764 44544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.08  E-value=1.4  Score=37.64  Aligned_cols=195  Identities=8%  Similarity=-0.049  Sum_probs=101.6

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      +..+|.|+..+..  ...+.++++.+++...+-.....         ...++.+|+..+...+.-      .....+.++
T Consensus        44 d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~---------~p~~ia~d~~~~~lyv~d------~~~~~I~~~  106 (267)
T 1npe_A           44 DCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQDLG---------SPEGIALDHLGRTIFWTD------SQLDRIEVA  106 (267)
T ss_dssp             ETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTTCC---------CEEEEEEETTTTEEEEEE------TTTTEEEEE
T ss_pred             ecCCCEEEEEECC--CCEEEEEecCCCCcEEEEECCCC---------CccEEEEEecCCeEEEEE------CCCCEEEEE
Confidence            3446777766653  45788888877654333211111         134777887654333221      123477888


Q ss_pred             ECCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe
Q 045675          185 STSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY  261 (382)
Q Consensus       185 ss~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~  261 (382)
                      +.....-+.........+     .++.+   +|.+||......    ...|.++++.......+... .. .....++..
T Consensus       107 ~~~g~~~~~~~~~~~~~P-----~~i~vd~~~g~lyv~~~~~~----~~~I~~~~~dg~~~~~~~~~-~~-~~P~gia~d  175 (267)
T 1npe_A          107 KMDGTQRRVLFDTGLVNP-----RGIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQD-NL-GLPNGLTFD  175 (267)
T ss_dssp             ETTSCSCEEEECSSCSSE-----EEEEEETTTTEEEEEECCSS----SCEEEEEETTSCCCEEEECT-TC-SCEEEEEEE
T ss_pred             EcCCCCEEEEEECCCCCc-----cEEEEeeCCCEEEEEECCCC----CcEEEEEecCCCCcEEEEEC-CC-CCCcEEEEc
Confidence            876543222211110111     22333   689999875421    24788999876554443211 11 123344443


Q ss_pred             --CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee-CCcEEEEEcC--eEEEEeCCCCcE-
Q 045675          262 --DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR-DSKIIMKSVD--QFFLFNPKTKRN-  335 (382)
Q Consensus       262 --~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~-~g~l~l~~~~--~~~~yd~~t~~~-  335 (382)
                        ++.|+++...        ...+.+..++..   .....++  ....|.++.. ++.||+....  ++..+|+++++. 
T Consensus       176 ~~~~~lyv~d~~--------~~~I~~~~~~g~---~~~~~~~--~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          176 AFSSQLCWVDAG--------THRAECLNPAQP---GRRKVLE--GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM  242 (267)
T ss_dssp             TTTTEEEEEETT--------TTEEEEEETTEE---EEEEEEE--CCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECC--------CCEEEEEecCCC---ceEEEec--CCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence              5678887765        445554444322   1111222  2344555543 4457777654  999999998764 


Q ss_pred             EEEee
Q 045675          336 FILPI  340 (382)
Q Consensus       336 ~~v~~  340 (382)
                      +.+..
T Consensus       243 ~~i~~  247 (267)
T 1npe_A          243 DTFHP  247 (267)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            44443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.02  E-value=2.1  Score=39.30  Aligned_cols=195  Identities=10%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      |.+++|.+..+    ..++|||..|++...+-......    .   ....+.|.+. +.|-+++-      .+..+.+++
T Consensus       114 S~~n~lAvgld----~tV~lWd~~tg~~~~~~~~~~~~----~---~V~sv~fspd-g~~lasgs------~Dg~v~iWd  175 (420)
T 4gga_A          114 SSGNVLAVALD----NSVYLWSASSGDILQLLQMEQPG----E---YISSVAWIKE-GNYLAVGT------SSAEVQLWD  175 (420)
T ss_dssp             CTTSEEEEEET----TEEEEEETTTCCEEEEEECCSTT----C---CEEEEEECTT-SSEEEEEE------TTSCEEEEE
T ss_pred             CCCCEEEEEeC----CEEEEEECCCCCEEEEEEecCCC----C---cEEEEEECCC-CCEEEEEE------CCCeEEEEE
Confidence            45677755433    38999999999876543322111    1   2345677764 34544432      334789999


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCe
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQS  264 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~  264 (382)
                      ..++.-...-.... ..    -.++..+|.+...+..+      ..+..+|..+.......+..... ....+. ..+|.
T Consensus       176 ~~~~~~~~~~~~h~-~~----v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h~~-~~~~~~~~~~g~  243 (420)
T 4gga_A          176 VQQQKRLRNMTSHS-AR----VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGHSQ-EVCGLRWAPDGR  243 (420)
T ss_dssp             TTTTEEEEEECCCS-SC----EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSS-CEEEEEECTTSS
T ss_pred             cCCCcEEEEEeCCC-Cc----eEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccccc-ceeeeeecCCCC
Confidence            88764221111111 01    13344556554444333      47777887664433222211111 122222 22555


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe-ecCCcccceEEeeCC-cEEEE-Ec--C-eEEEEeCCCCcEEE
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT-AFERIAWPVGSFRDS-KIIMK-SV--D-QFFLFNPKTKRNFI  337 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i-~~~~~~~~~~~~~~g-~l~l~-~~--~-~~~~yd~~t~~~~~  337 (382)
                      +.+....        ...+.||.....+. +..+... .....+..+.+...+ .++.. ..  + .+.+||+++++...
T Consensus       244 ~l~s~~~--------D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          244 HLASGGN--------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             EEEEEET--------TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred             eeeeeec--------cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence            5554444        67888998876533 3222222 111123333333333 34433 22  2 78888888876544


Q ss_pred             E
Q 045675          338 L  338 (382)
Q Consensus       338 v  338 (382)
                      .
T Consensus       316 ~  316 (420)
T 4gga_A          316 A  316 (420)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.88  E-value=1.8  Score=37.90  Aligned_cols=191  Identities=11%  Similarity=0.068  Sum_probs=101.9

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      ...+.+++....  ...+.++|+.|++....-..+..         .. ++.+++..+ +.++. ..    ....+.+++
T Consensus         7 ~~~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~---------~~-~~~~s~dg~-~l~~~-~~----~~~~i~~~d   68 (331)
T 3u4y_A            7 TTSNFGIVVEQH--LRRISFFSTDTLEILNQITLGYD---------FV-DTAITSDCS-NVVVT-SD----FCQTLVQIE   68 (331)
T ss_dssp             CCCCEEEEEEGG--GTEEEEEETTTCCEEEEEECCCC---------EE-EEEECSSSC-EEEEE-ES----TTCEEEEEE
T ss_pred             CCCCEEEEEecC--CCeEEEEeCcccceeeeEEccCC---------cc-eEEEcCCCC-EEEEE-eC----CCCeEEEEE
Confidence            334555555443  45899999999987553222211         23 677777654 22222 11    234888999


Q ss_pred             CCCCCe--eeecCCCCeeEEeCCc-ceEEECceEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEE-
Q 045675          186 TSTGKW--KEVAAGTGSCVIYGGQ-DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALS-  260 (382)
Q Consensus       186 s~t~~W--~~~~~~~~~~~~~~~~-~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~-  260 (382)
                      ..++.-  +.......+  .   . -.+.-+|...+......   ....|..+|+.+.+... ++...    ....+.. 
T Consensus        69 ~~~~~~~~~~~~~~~~~--~---~~~~~s~dg~~l~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~s  136 (331)
T 3u4y_A           69 TQLEPPKVVAIQEGQSS--M---ADVDITPDDQFAVTVTGLN---HPFNMQSYSFLKNKFISTIPIPY----DAVGIAIS  136 (331)
T ss_dssp             CSSSSCEEEEEEECSSC--C---CCEEECTTSSEEEECCCSS---SSCEEEEEETTTTEEEEEEECCT----TEEEEEEC
T ss_pred             CCCCceeEEecccCCCC--c---cceEECCCCCEEEEecCCC---CcccEEEEECCCCCeEEEEECCC----CccceEEC
Confidence            887764  111111110  0   1 12223465333333220   11279999998876543 33322    2233443 


Q ss_pred             eCCe-EEEEEecCCCccCCCCCe-EEEEEECCCCC--eeE-EEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeCCC
Q 045675          261 YDQS-LALAVYPGLGFRSRLSNR-FELWVMNEGKG--WTR-TFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNPKT  332 (382)
Q Consensus       261 ~~g~-L~~~~~~~~~~~~~~~~~-~~iW~l~~~~~--W~~-~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~~t  332 (382)
                      -+|+ |++....        ... +.+|.++.. +  ... ...++...-...+.+..+|+ +++....  .+.+||+++
T Consensus       137 pdg~~l~~~~~~--------~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  207 (331)
T 3u4y_A          137 PNGNGLILIDRS--------SANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN  207 (331)
T ss_dssp             TTSSCEEEEEET--------TTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCEEEEEecC--------CCceEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            3665 5555554        455 999999865 4  222 12222222234455667787 6666643  899999998


Q ss_pred             CcE
Q 045675          333 KRN  335 (382)
Q Consensus       333 ~~~  335 (382)
                      ++.
T Consensus       208 ~~~  210 (331)
T 3u4y_A          208 PEN  210 (331)
T ss_dssp             TTS
T ss_pred             Ccc
Confidence            875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.84  E-value=1.6  Score=37.01  Aligned_cols=192  Identities=10%  Similarity=0.051  Sum_probs=96.1

Q ss_pred             eeeccCceEEE-eeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675          103 IVGSCNGLLCL-DVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA  181 (382)
Q Consensus       103 ~~~s~~Gll~~-~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  181 (382)
                      +.-+.+|-|.+ .+..  ...+.++|+.+++...++......         ..++.+|+... ..|.   .  .  ...+
T Consensus        29 i~~~~~g~l~v~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~---------p~~i~~~~~g~-l~v~---~--~--~~~i   89 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGM--YGRVVKLATGSTGTTVLPFNGLYQ---------PQGLAVDGAGT-VYVT---D--F--NNRV   89 (270)
T ss_dssp             EEECTTCCEEEEECSS--SCEEEEECC-----EECCCCSCCS---------CCCEEECTTCC-EEEE---E--T--TTEE
T ss_pred             eEECCCCCEEEEccCC--CCcEEEecCCCcccceEeeCCcCC---------cceeEECCCCC-EEEE---c--C--CCEE
Confidence            33344676666 4332  457889999887766554332111         12566676533 2222   1  1  3478


Q ss_pred             EEEECCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      .+|+..+..-..........+     .++.+  +|.+|+.....      ..|..+|..+.......... . .....++
T Consensus        90 ~~~d~~~~~~~~~~~~~~~~p-----~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~-~-~~p~~i~  156 (270)
T 1rwi_B           90 VTLAAGSNNQTVLPFDGLNYP-----EGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFTG-L-NDPDGVA  156 (270)
T ss_dssp             EEECTTCSCCEECCCCSCSSE-----EEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCCS-C-CSCCCEE
T ss_pred             EEEeCCCceEeeeecCCcCCC-----cceEECCCCCEEEEECCC------CEEEEEECCCceeEeecccc-C-CCceeEE
Confidence            888877664433321110111     22222  68877654432      47888887765544332111 1 1223344


Q ss_pred             Ee-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc--eEEeeCCcEEEEEcC--eEEEEeCCCCc
Q 045675          260 SY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP--VGSFRDSKIIMKSVD--QFFLFNPKTKR  334 (382)
Q Consensus       260 ~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~--~~~~~~g~l~l~~~~--~~~~yd~~t~~  334 (382)
                      .. +|+|++....        ...+.+|..+.. .  ... .....+..|  +++..+|.|++....  .+..||++++.
T Consensus       157 ~~~~g~l~v~~~~--------~~~i~~~~~~~~-~--~~~-~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          157 VDNSGNVYVTDTD--------NNRVVKLEAESN-N--QVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             ECTTCCEEEEEGG--------GTEEEEECTTTC-C--EEE-CCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             EeCCCCEEEEECC--------CCEEEEEecCCC-c--eEe-ecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            43 6888776654        445665554433 1  111 112222333  444456778887753  89999998876


Q ss_pred             EEEE
Q 045675          335 NFIL  338 (382)
Q Consensus       335 ~~~v  338 (382)
                      ....
T Consensus       225 ~~~~  228 (270)
T 1rwi_B          225 STVL  228 (270)
T ss_dssp             CEEC
T ss_pred             ceee
Confidence            5543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=94.82  E-value=2.1  Score=38.25  Aligned_cols=116  Identities=14%  Similarity=0.058  Sum_probs=68.2

Q ss_pred             EECceEEEEeecccccccccEEEEEECCCceeeEe----CCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCC-CCeEE
Q 045675          211 AVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT----AMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRL-SNRFE  284 (382)
Q Consensus       211 ~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i----~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~-~~~~~  284 (382)
                      .-+|...++....     ...|..||+.+.++..+    ..|.... ....+.. -+|+..++...       . ...+.
T Consensus       219 spdg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~-~~~~i~~spdg~~l~v~~~-------~~~~~i~  285 (361)
T 3scy_A          219 NSDGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQ-GSGDIHLSPDGKYLYASNR-------LKADGVA  285 (361)
T ss_dssp             CTTSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCC-CEEEEEECTTSSEEEEEEC-------SSSCEEE
T ss_pred             cCCCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCC-CcccEEECCCCCEEEEECC-------CCCCEEE
Confidence            3367644444422     24788888887766544    2232211 2223433 37775444443       2 57899


Q ss_pred             EEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEe
Q 045675          285 LWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILP  339 (382)
Q Consensus       285 iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~  339 (382)
                      ||.++...+ +..+..++......-+.+..+|+ |++...+    .++.+|.++++.+.+.
T Consensus       286 v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             EEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             EEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            999984334 77777676533344566777887 5555533    4555788899988774

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.63  E-value=1.5  Score=37.76  Aligned_cols=113  Identities=7%  Similarity=0.043  Sum_probs=71.9

Q ss_pred             eEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEE
Q 045675          209 AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWV  287 (382)
Q Consensus       209 ~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~  287 (382)
                      -.+.+|.+|.=++..+    ...|..+|+.+.+. ..+++|...  ....+...+++|+++...        ...+.++-
T Consensus        48 L~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~~~--FgeGit~~g~~ly~ltw~--------~~~v~v~D  113 (262)
T 3nol_A           48 FFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGKRY--FGEGISDWKDKIVGLTWK--------NGLGFVWN  113 (262)
T ss_dssp             EEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCTTC--CEEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred             EEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCCcc--ceeEEEEeCCEEEEEEee--------CCEEEEEE
Confidence            3455787777665542    24899999998766 555776543  334467788999988765        45555444


Q ss_pred             ECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcEE-EEee
Q 045675          288 MNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNF-ILPI  340 (382)
Q Consensus       288 l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~-~v~~  340 (382)
                      .+..   ..+.+|+...  ...++..++. |++.... ++..+|++|.+.. .+.+
T Consensus       114 ~~t~---~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          114 IRNL---RQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             TTTC---CEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             CccC---cEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            4443   6677777644  3344445555 5555434 8999999987644 4544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.50  E-value=2.1  Score=36.78  Aligned_cols=193  Identities=13%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +....+|-+.+....  ...++++||. ++...++.+....        ...++.+|+.. ...|.   .   .....+.
T Consensus        67 i~~~~~g~l~v~~~~--~~~v~~~d~~-g~~~~~~~~~~~~--------~~~~i~~~~~g-~l~v~---~---~~~~~i~  128 (300)
T 2qc5_A           67 LIVSSLGDIWFTENG--ANKIGKLSKK-GGFTEYPLPQPDS--------GPYGITEGLNG-DIWFT---Q---LNGDRIG  128 (300)
T ss_dssp             EEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSSTTC--------CEEEEEECSTT-CEEEE---E---TTTTEEE
T ss_pred             EEECCCCCEEEEecC--CCeEEEECCC-CCeEEecCCCCCC--------CCccceECCCC-CEEEE---c---cCCCeEE
Confidence            333456776665542  3478899998 6655443221111        13366667643 22221   1   1123667


Q ss_pred             EEECCCCCeeeecCC-CCeeEEeCCcceEE--ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          183 VYSTSTGKWKEVAAG-TGSCVIYGGQDAVA--VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       183 vyss~t~~W~~~~~~-~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      .|+.. +........ ....+     .++.  -+|.+|+.....      ..|..||. +.++..+..|.... ....+.
T Consensus       129 ~~~~~-g~~~~~~~~~~~~~~-----~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~-~~~~i~  194 (300)
T 2qc5_A          129 KLTAD-GTIYEYDLPNKGSYP-----AFITLGSDNALWFTENQN------NSIGRITN-TGKLEEYPLPTNAA-APVGIT  194 (300)
T ss_dssp             EECTT-SCEEEEECSSTTCCE-----EEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTC-CEEEEE
T ss_pred             EECCC-CCEEEccCCCCCCCc-----eeEEECCCCCEEEEecCC------CeEEEECC-CCcEEEeeCCCCCC-CcceEE
Confidence            77766 544433211 11111     2222  357866654322      47999999 66676666654332 233444


Q ss_pred             Ee-CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccc--eEEeeCCcEEEEEc--CeEEEEeCCCC
Q 045675          260 SY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWP--VGSFRDSKIIMKSV--DQFFLFNPKTK  333 (382)
Q Consensus       260 ~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~--~~~~~~g~l~l~~~--~~~~~yd~~t~  333 (382)
                      .. +|.|++....        ...+.++  +.. + +.. ..++. ....|  +.+..+|.|++...  +.+..||+ ++
T Consensus       195 ~d~~g~l~v~~~~--------~~~i~~~--~~~-g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  260 (300)
T 2qc5_A          195 SGNDGALWFVEIM--------GNKIGRI--TTT-GEISE-YDIPT-PNARPHAITAGKNSEIWFTEWGANQIGRITN-DN  260 (300)
T ss_dssp             ECTTSSEEEEETT--------TTEEEEE--CTT-CCEEE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred             ECCCCCEEEEccC--------CCEEEEE--cCC-CcEEE-EECCC-CCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence            43 7888877654        3444444  433 3 332 22321 22334  44445677888874  38999999 56


Q ss_pred             cEEEEeee
Q 045675          334 RNFILPID  341 (382)
Q Consensus       334 ~~~~v~~~  341 (382)
                      ++....+.
T Consensus       261 ~~~~~~~~  268 (300)
T 2qc5_A          261 TIQEYQLQ  268 (300)
T ss_dssp             CEEEEECC
T ss_pred             cEEEEECC
Confidence            66655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=94.41  E-value=2.3  Score=37.00  Aligned_cols=200  Identities=10%  Similarity=-0.012  Sum_probs=103.6

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST  186 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss  186 (382)
                      .+|.|+..+..  ...++.+||.+++...+....           ...++.+++..+ + +++.       ...+.+|+.
T Consensus        23 ~~~~l~~~d~~--~~~i~~~d~~~~~~~~~~~~~-----------~~~~i~~~~dG~-l-~v~~-------~~~l~~~d~   80 (297)
T 3g4e_A           23 VSNSLLFVDIP--AKKVCRWDSFTKQVQRVTMDA-----------PVSSVALRQSGG-Y-VATI-------GTKFCALNW   80 (297)
T ss_dssp             TTTEEEEEETT--TTEEEEEETTTCCEEEEECSS-----------CEEEEEEBTTSS-E-EEEE-------TTEEEEEET
T ss_pred             CCCEEEEEECC--CCEEEEEECCCCcEEEEeCCC-----------ceEEEEECCCCC-E-EEEE-------CCeEEEEEC
Confidence            35556555543  458899999998765543321           123567777654 2 3322       137889999


Q ss_pred             CCCCeeeecCCC-C-eeEEeCCcceEEECceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          187 STGKWKEVAAGT-G-SCVIYGGQDAVAVKGVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       187 ~t~~W~~~~~~~-~-~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      .++.++...... . .... ...-.+.-+|.+|+-.......     .....|..+|.... ...+.-  .. ...-.++
T Consensus        81 ~~g~~~~~~~~~~~~~~~~-~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~--~~-~~pngi~  155 (297)
T 3g4e_A           81 KEQSAVVLATVDNDKKNNR-FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFD--QV-DISNGLD  155 (297)
T ss_dssp             TTTEEEEEEECCTTCSSEE-EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEE--EE-SBEEEEE
T ss_pred             CCCcEEEEEecCCCCCCCC-CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEee--cc-ccccceE
Confidence            988887654431 1 1111 0011222368866544321100     12347888888643 222210  00 0112233


Q ss_pred             Ee-CCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe-ecCC---cccceEEeeCCcEEEEEcC--eEEEEeC
Q 045675          260 SY-DQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT-AFER---IAWPVGSFRDSKIIMKSVD--QFFLFNP  330 (382)
Q Consensus       260 ~~-~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i-~~~~---~~~~~~~~~~g~l~l~~~~--~~~~yd~  330 (382)
                      .. +|+ |+++...        ...+.+|.++...+ ......+ .+..   ...-+.+..+|.|++....  ++..||+
T Consensus       156 ~spdg~~lyv~~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          156 WSLDHKIFYYIDSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             ECTTSCEEEEEEGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             EcCCCCEEEEecCC--------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            32 564 6666554        56677777752224 3222111 2221   1233445567788888754  7999999


Q ss_pred             CCCcE-EEEeee
Q 045675          331 KTKRN-FILPID  341 (382)
Q Consensus       331 ~t~~~-~~v~~~  341 (382)
                      ++++. ..+..+
T Consensus       228 ~tG~~~~~i~~p  239 (297)
T 3g4e_A          228 VTGKRLQTVKLP  239 (297)
T ss_dssp             TTCCEEEEEECS
T ss_pred             CCceEEEEEECC
Confidence            97664 455554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.20  E-value=4.2  Score=39.13  Aligned_cols=194  Identities=9%  Similarity=-0.041  Sum_probs=105.4

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      -+|.+++....  ...+.|+|+.|++... ++....           ..++.++|..+ |-++.-      ....+.+|+
T Consensus       147 p~~~~~vs~~~--d~~V~v~D~~t~~~~~~i~~g~~-----------~~~v~~spdg~-~l~v~~------~d~~V~v~D  206 (543)
T 1nir_A          147 LPNLFSVTLRD--AGQIALVDGDSKKIVKVIDTGYA-----------VHISRMSASGR-YLLVIG------RDARIDMID  206 (543)
T ss_dssp             GGGEEEEEEGG--GTEEEEEETTTCCEEEEEECSTT-----------EEEEEECTTSC-EEEEEE------TTSEEEEEE
T ss_pred             CCCEEEEEEcC--CCeEEEEECCCceEEEEEecCcc-----------cceEEECCCCC-EEEEEC------CCCeEEEEE
Confidence            36777666553  5689999999987543 332111           23566777543 333321      125899999


Q ss_pred             C--CCCCeeeecCC-CCeeEEeCCcceEEE----CceEEEEeecccccccccEEEEEECCCcee-eEeCCCCC-CC----
Q 045675          186 T--STGKWKEVAAG-TGSCVIYGGQDAVAV----KGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPEL-PT----  252 (382)
Q Consensus       186 s--~t~~W~~~~~~-~~~~~~~~~~~~v~~----~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~-~~----  252 (382)
                      .  .+++-  +... ....+.   +-++.-    +|..-+.+...     ...|..+|..+.+. ..++.+.. ..    
T Consensus       207 ~~~~t~~~--~~~i~~g~~p~---~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          207 LWAKEPTK--VAEIKIGIEAR---SVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             TTSSSCEE--EEEEECCSEEE---EEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             CcCCCCcE--EEEEecCCCcc---eEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCcccc
Confidence            8  55432  1111 111111   122222    67655555432     24788899987654 33444211 00    


Q ss_pred             --C-CeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcE-EEEEc--CeE
Q 045675          253 --D-CYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKI-IMKSV--DQF  325 (382)
Q Consensus       253 --~-~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l-~l~~~--~~~  325 (382)
                        + ....+... +|...++...       ....+.+|-..+. +-.++..++......-+++..+|+. +....  +.+
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~-------~~g~i~vvd~~~~-~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v  348 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVK-------ETGKVLLVNYKDI-DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKV  348 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEET-------TTTEEEEEECTTS-SSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEE
T ss_pred             ccCCceEEEEECCCCCEEEEEEC-------CCCeEEEEEecCC-CcceeEEeccCcCccCceECCCCCEEEEEecCCCeE
Confidence              0 12233332 3555555554       3677888877664 2122345554445566777788884 44443  389


Q ss_pred             EEEeCCCCcEEEE
Q 045675          326 FLFNPKTKRNFIL  338 (382)
Q Consensus       326 ~~yd~~t~~~~~v  338 (382)
                      .++|.++++....
T Consensus       349 ~v~D~~tg~l~~~  361 (543)
T 1nir_A          349 AVIDSKDRRLSAL  361 (543)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEECCCCeEEEe
Confidence            9999999986653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=93.80  E-value=2.9  Score=35.80  Aligned_cols=192  Identities=12%  Similarity=0.062  Sum_probs=100.2

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +....+|-+.+....  ...+.++||. ++...++.+....        ...++.+|+... ..+.   .   .....+.
T Consensus        20 i~~d~~g~l~v~~~~--~~~v~~~d~~-~~~~~~~~~~~~~--------~~~~i~~~~~g~-l~v~---~---~~~~~i~   81 (299)
T 2z2n_A           20 ITVSDKGKVWITQHK--ANMISCINLD-GKITEYPLPTPDA--------KVMCLTISSDGE-VWFT---E---NAANKIG   81 (299)
T ss_dssp             EEECTTSCEEEEETT--TTEEEEECTT-CCEEEEECSSTTC--------CEEEEEECTTSC-EEEE---E---TTTTEEE
T ss_pred             eEECCCCCEEEEecC--CCcEEEEcCC-CCeEEecCCcccC--------ceeeEEECCCCC-EEEe---C---CCCCeEE
Confidence            444556777666542  3478999998 7766544321110        233566776432 2221   1   0123566


Q ss_pred             EEECCCCCeeeecCC-CCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          183 VYSTSTGKWKEVAAG-TGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       183 vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      .|+.. +..+..... .....     .++..  +|.+|......      ..|..+|+ +.+...+..|.... ....+.
T Consensus        82 ~~~~~-g~~~~~~~~~~~~~~-----~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~~~~~~-~~~~i~  147 (299)
T 2z2n_A           82 RITKK-GIIKEYTLPNPDSAP-----YGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYELPNKGS-YPSFIT  147 (299)
T ss_dssp             EECTT-SCEEEEECSSTTCCE-----EEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTC-CEEEEE
T ss_pred             EECCC-CcEEEEeCCCcCCCc-----eeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecCCCCCC-CCceEE
Confidence            67664 444443321 11111     22333  57766654332      48999999 66677665553321 233444


Q ss_pred             Ee-CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccc--eEEeeCCcEEEEEc--CeEEEEeCCCC
Q 045675          260 SY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWP--VGSFRDSKIIMKSV--DQFFLFNPKTK  333 (382)
Q Consensus       260 ~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~--~~~~~~g~l~l~~~--~~~~~yd~~t~  333 (382)
                      .. +|.|++....        ...+  +.++.. + ... ..++. ....|  +.+..+|.|++...  +.+..||+ ++
T Consensus       148 ~~~~g~l~v~~~~--------~~~i--~~~~~~-g~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g  213 (299)
T 2z2n_A          148 LGSDNALWFTENQ--------NNAI--GRITES-GDITE-FKIPT-PASGPVGITKGNDDALWFVEIIGNKIGRITT-SG  213 (299)
T ss_dssp             ECTTSCEEEEETT--------TTEE--EEECTT-CCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             EcCCCCEEEEeCC--------CCEE--EEEcCC-CcEEE-eeCCC-CCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence            43 6788876543        3344  444442 4 332 22221 12233  44445677888774  38999999 77


Q ss_pred             cEEEEee
Q 045675          334 RNFILPI  340 (382)
Q Consensus       334 ~~~~v~~  340 (382)
                      ++..+..
T Consensus       214 ~~~~~~~  220 (299)
T 2z2n_A          214 EITEFKI  220 (299)
T ss_dssp             CEEEEEC
T ss_pred             cEEEEEC
Confidence            7766533

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=93.73  E-value=3  Score=35.75  Aligned_cols=203  Identities=9%  Similarity=0.072  Sum_probs=104.7

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +.+|.+++.+..  ...+.++|+..+....++........  ..  ...++.+++..+...|...     .....+.+|+
T Consensus        38 ~~~g~l~v~~~~--~~~i~~~d~~g~~~~~~~~~~~~~~~--~~--~p~~i~~~~~~g~l~v~~~-----~~~~~i~~~d  106 (286)
T 1q7f_A           38 NAQNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQ--LL--YPNRVAVVRNSGDIIVTER-----SPTHQIQIYN  106 (286)
T ss_dssp             CTTCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTC--BS--SEEEEEEETTTTEEEEEEC-----GGGCEEEEEC
T ss_pred             CCCCCEEEEECC--CCEEEEECCCCcEEEEecccCCCccc--cc--CceEEEEEcCCCeEEEEcC-----CCCCEEEEEC
Confidence            446666665432  44788999886555555432211100  00  2335666544343322211     0134788888


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCe
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQS  264 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~  264 (382)
                      .....-+.........+.   .-++.-+|.+|......      ..|..||...+....+..+.... ....++.. +|.
T Consensus       107 ~~g~~~~~~~~~~~~~~~---~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~-~p~~i~~~~~g~  176 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPR---GVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLE-FPNGVVVNDKQE  176 (286)
T ss_dssp             TTSCEEEEECTTTCSCEE---EEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCS-SEEEEEECSSSE
T ss_pred             CCCcEEEEecCccCCCce---EEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCccC-CcEEEEECCCCC
Confidence            443322223221111111   01122368876654332      48999998877666664332221 23344443 688


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC-cccc--eEEeeCCcEEEEEc--C-eEEEEeCCCCcEEEE
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-IAWP--VGSFRDSKIIMKSV--D-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-~~~~--~~~~~~g~l~l~~~--~-~~~~yd~~t~~~~~v  338 (382)
                      |++....        ...+.+|..+..  .  +..+.... +..|  +++..+|.|++...  + .+..||.+.+....+
T Consensus       177 l~v~~~~--------~~~i~~~~~~g~--~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~  244 (286)
T 1q7f_A          177 IFISDNR--------AHCVKVFNYEGQ--Y--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  244 (286)
T ss_dssp             EEEEEGG--------GTEEEEEETTCC--E--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             EEEEECC--------CCEEEEEcCCCC--E--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence            8776654        567777765322  2  23343222 2334  44455777888774  3 899999887776666


Q ss_pred             eee
Q 045675          339 PID  341 (382)
Q Consensus       339 ~~~  341 (382)
                      ...
T Consensus       245 ~~~  247 (286)
T 1q7f_A          245 ESK  247 (286)
T ss_dssp             EES
T ss_pred             ccc
Confidence            543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.69  E-value=4.1  Score=37.22  Aligned_cols=210  Identities=10%  Similarity=-0.029  Sum_probs=103.9

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      ..+|.|+..+..  ...++.+++.++....+-.....         ...++.+|+..+...+.-.      ....+++++
T Consensus       125 ~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~---------~p~glavd~~~g~lY~~d~------~~~~I~~~~  187 (386)
T 3v65_B          125 HRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLE---------SPGGLAVDWVHDKLYWTDS------GTSRIEVAN  187 (386)
T ss_dssp             TTTTEEEEEETT--TTEEEEEETTSCCEEEEECSSCS---------CCCCEEEETTTTEEEEEET------TTTEEEECB
T ss_pred             cCCCeEEEEeCC--CCcEEEEecCCCCcEEEEeCCCC---------CccEEEEEeCCCeEEEEcC------CCCeEEEEe
Confidence            346666666543  44677777776654433221111         1125677765544332211      223666666


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEE---ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE--
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVA---VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS--  260 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~--  260 (382)
                      ..+..-+.+.......+     .++.   .+|.|||.....     ...|..+|+....-..+... .. ...-.|+.  
T Consensus       188 ~dg~~~~~l~~~~l~~P-----~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~-~~-~~PnGlavd~  255 (386)
T 3v65_B          188 LDGAHRKVLLWQSLEKP-----RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT-HL-FWPNGLTIDY  255 (386)
T ss_dssp             TTSCSCEEEECSSCSCE-----EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECS-SC-SCEEEEEEEG
T ss_pred             CCCCceEEeecCCCCCC-----cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC-CC-CCeeeEEEeC
Confidence            65443222211100111     2232   268999986543     25899999986544443211 11 12344555  


Q ss_pred             eCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEe-eCCcEEEEEcC--eEEEEeCCCCc-E
Q 045675          261 YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSF-RDSKIIMKSVD--QFFLFNPKTKR-N  335 (382)
Q Consensus       261 ~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~-~~g~l~l~~~~--~~~~yd~~t~~-~  335 (382)
                      .+|+|+++...        ...  |+..+-. | -.+. .+. ..+..|.++. .++.||+....  +|..+|..+++ .
T Consensus       256 ~~~~lY~aD~~--------~~~--I~~~d~d-G~~~~~-~~~-~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          256 AGRRMYWVDAK--------HHV--IERANLD-GSHRKA-VIS-QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             GGTEEEEEETT--------TTE--EEEECTT-SCSCEE-EEC-SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCCEEEEEECC--------CCE--EEEEeCC-CCeeEE-EEE-CCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence            37889988765        444  4454432 2 1111 121 2244565554 34457766654  89999955554 4


Q ss_pred             EEEeeeCCCCCeEEEEEEeeceee
Q 045675          336 FILPIDSGMGYSYKVFTYVDSIVA  359 (382)
Q Consensus       336 ~~v~~~~~~~~~~~~~~y~~SLv~  359 (382)
                      +.+......  -..+.+|.++..|
T Consensus       323 ~~i~~~~~~--p~gi~v~~~~~q~  344 (386)
T 3v65_B          323 EIIRNKLHF--PMDIHTLHPQRQP  344 (386)
T ss_dssp             EEEECSCSC--CCCEEEESGGGSC
T ss_pred             EEEccCCCC--CceEEEEchhcCc
Confidence            444432111  1345556555443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=93.64  E-value=3.6  Score=36.44  Aligned_cols=194  Identities=8%  Similarity=-0.059  Sum_probs=101.4

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccce-eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEF-KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      .++.+.+....  ...+.++|+.|++. ..+|....           ..++.+++..   ++.....    ....+.+++
T Consensus        52 ~~~~lyv~~~~--~~~v~viD~~t~~~~~~i~~~~~-----------p~~i~~~~~g---~lyv~~~----~~~~v~~iD  111 (328)
T 3dsm_A           52 RDGIGWIVVNN--SHVIFAIDINTFKEVGRITGFTS-----------PRYIHFLSDE---KAYVTQI----WDYRIFIIN  111 (328)
T ss_dssp             ETTEEEEEEGG--GTEEEEEETTTCCEEEEEECCSS-----------EEEEEEEETT---EEEEEEB----SCSEEEEEE
T ss_pred             ECCEEEEEEcC--CCEEEEEECcccEEEEEcCCCCC-----------CcEEEEeCCC---eEEEEEC----CCCeEEEEE
Confidence            35666555442  45899999999987 44653321           1245555432   3333221    245889999


Q ss_pred             CCCCCeee-ecCCC--CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCeeeEE-E
Q 045675          186 TSTGKWKE-VAAGT--GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYVKAL-S  260 (382)
Q Consensus       186 s~t~~W~~-~~~~~--~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~-~  260 (382)
                      ..+++-.. ++...  ..... . ...+..+|.+|......     ...|.++|+.+.+.. .++.....    ..+. .
T Consensus       112 ~~t~~~~~~i~~g~~~~~~~~-p-~~i~~~~~~lyv~~~~~-----~~~v~viD~~t~~~~~~i~~g~~p----~~i~~~  180 (328)
T 3dsm_A          112 PKTYEITGYIECPDMDMESGS-T-EQMVQYGKYVYVNCWSY-----QNRILKIDTETDKVVDELTIGIQP----TSLVMD  180 (328)
T ss_dssp             TTTTEEEEEEECTTCCTTTCB-C-CCEEEETTEEEEEECTT-----CCEEEEEETTTTEEEEEEECSSCB----CCCEEC
T ss_pred             CCCCeEEEEEEcCCccccCCC-c-ceEEEECCEEEEEcCCC-----CCEEEEEECCCCeEEEEEEcCCCc----cceEEc
Confidence            98875321 22111  00001 1 13334677887765421     248999999987664 34443221    1222 3


Q ss_pred             eCCeEEEEEecCCCccCC----CCCeEEEEEECCCCCeeEEEEeecC--CcccceEEeeCCcEEEEEcCeEEEEeCCCCc
Q 045675          261 YDQSLALAVYPGLGFRSR----LSNRFELWVMNEGKGWTRTFNTAFE--RIAWPVGSFRDSKIIMKSVDQFFLFNPKTKR  334 (382)
Q Consensus       261 ~~g~L~~~~~~~~~~~~~----~~~~~~iW~l~~~~~W~~~~~i~~~--~~~~~~~~~~~g~l~l~~~~~~~~yd~~t~~  334 (382)
                      -+|+|+++...  .....    ....+.++-.+..   .....+.+.  ....-+++..++..+++....++.+|+++++
T Consensus       181 ~dG~l~v~~~~--~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~  255 (328)
T 3dsm_A          181 KYNKMWTITDG--GYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADR  255 (328)
T ss_dssp             TTSEEEEEBCC--BCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSS
T ss_pred             CCCCEEEEECC--CccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCc
Confidence            47888777654  10000    0134554444333   233344432  2233455555566554444599999999988


Q ss_pred             EE
Q 045675          335 NF  336 (382)
Q Consensus       335 ~~  336 (382)
                      +.
T Consensus       256 ~~  257 (328)
T 3dsm_A          256 VP  257 (328)
T ss_dssp             CC
T ss_pred             ee
Confidence            64

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.63  E-value=3.6  Score=36.44  Aligned_cols=137  Identities=11%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             CEEEEEECCCCCeeeecCCCC-eeEEeCCcceEEE--C--ceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCC
Q 045675          179 AIAEVYSTSTGKWKEVAAGTG-SCVIYGGQDAVAV--K--GVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPT  252 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~-~~~~~~~~~~v~~--~--G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~  252 (382)
                      ..+.+|+..++.|........ ....    ..+.+  +  |.+...+..+      ..|..+|+.+..- ..+.+.... 
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~-  147 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASV----NSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA-  147 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCE----EEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCT-
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcce----EEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCC-
Confidence            478999998888765544321 1111    22222  2  4444444333      4788888876522 211111111 


Q ss_pred             CCeeeEEEe--------------CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeec-CCcccceEEeeC--
Q 045675          253 DCYVKALSY--------------DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAF-ERIAWPVGSFRD--  314 (382)
Q Consensus       253 ~~~~~l~~~--------------~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~-~~~~~~~~~~~~--  314 (382)
                      .....+...              ++.+.++...        ...+.+|.+..... |.....+.. .....-+.+..+  
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA--------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             TCEEEEEECCCC----------CTTCEEEEEET--------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             CceEEEEEcCccccccccccCCCCCCEEEEEeC--------CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            012222222              4666666654        66899999986534 776666642 222444555666  


Q ss_pred             -CcEEEEEc-C-eEEEEeCCCCc
Q 045675          315 -SKIIMKSV-D-QFFLFNPKTKR  334 (382)
Q Consensus       315 -g~l~l~~~-~-~~~~yd~~t~~  334 (382)
                       +.+++... + .+.+||++++.
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCC
Confidence             66554443 4 78899988763

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.46  E-value=2.4  Score=42.59  Aligned_cols=183  Identities=11%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCC-CCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDT-NDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~  198 (382)
                      ...+.|||..++....+.......    .   ....+.+.+.. +.+-+.+.      .+..+.+|+..++.|.......
T Consensus        30 dg~I~vwd~~~~~~~~~~~l~~h~----~---~V~~l~~s~~~~~~~l~s~s------~Dg~I~vwd~~~~~~~~~~~~~   96 (753)
T 3jro_A           30 DKTIKIFEVEGETHKLIDTLTGHE----G---PVWRVDWAHPKFGTILASCS------YDGKVLIWKEENGRWSQIAVHA   96 (753)
T ss_dssp             TTEEEEEEEETTEEEEEEEECCCS----S---CEEEEEECCTTSCSEEEEEE------TTSCEEEEEEETTEEEEEEEEC
T ss_pred             CCcEEEEecCCCCCccceeccCCc----C---ceEEEEecCCCCCCEEEEEe------CCCeEEEEECCCCccccccccc
Confidence            346778877643333222111111    1   23456666654 33333332      2347899999888776554432


Q ss_pred             C-eeEEeCCcceEEE--C--ceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCeeeEEEe-----------
Q 045675          199 G-SCVIYGGQDAVAV--K--GVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYVKALSY-----------  261 (382)
Q Consensus       199 ~-~~~~~~~~~~v~~--~--G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~~-----------  261 (382)
                      . ....    .++.+  +  |.+...++.+      ..|..+|+.+..-. ...+.... .....+...           
T Consensus        97 ~h~~~V----~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~-~~v~~l~~~p~~~~~~~~~~  165 (753)
T 3jro_A           97 VHSASV----NSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHA-IGVNSASWAPATIEEDGEHN  165 (753)
T ss_dssp             CCSSCE----EEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCS-SCEEEEEECCCC--------
T ss_pred             CCCCCe----EEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCC-CceEEEEecCcccccccccc
Confidence            1 1111    22222  2  4444444433      47888888765211 11111110 011222221           


Q ss_pred             ---CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeec-CCcccceEEeeC---CcEEEEEc-C-eEEEEeCC
Q 045675          262 ---DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAF-ERIAWPVGSFRD---SKIIMKSV-D-QFFLFNPK  331 (382)
Q Consensus       262 ---~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~-~~~~~~~~~~~~---g~l~l~~~-~-~~~~yd~~  331 (382)
                         +|.+.+.+..        ...+.+|.+..... +.....+.. ..-+.-+.+..+   +.+++... + .+.+||++
T Consensus       166 ~~~d~~~l~sgs~--------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          166 GTKESRKFVTGGA--------DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -CGGGCCEEEEET--------TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cCCCCCEEEEEEC--------CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence               3566555554        67899999987634 666665532 222444555566   66554443 4 78899988


Q ss_pred             CCc
Q 045675          332 TKR  334 (382)
Q Consensus       332 t~~  334 (382)
                      +++
T Consensus       238 ~~~  240 (753)
T 3jro_A          238 NEQ  240 (753)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=93.40  E-value=3.5  Score=35.61  Aligned_cols=110  Identities=12%  Similarity=-0.021  Sum_probs=69.0

Q ss_pred             ceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCC
Q 045675          214 GVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGK  292 (382)
Q Consensus       214 G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~  292 (382)
                      |.+|.-++...    ...|..+|+.+.+- ..+++|...  ....++..+++|++....        ...+.++-.+.  
T Consensus        32 g~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~--fgeGi~~~g~~lyv~t~~--------~~~v~viD~~t--   95 (266)
T 2iwa_A           32 DTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSY--FGEGLTLLNEKLYQVVWL--------KNIGFIYDRRT--   95 (266)
T ss_dssp             TEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTC--CEEEEEEETTEEEEEETT--------CSEEEEEETTT--
T ss_pred             CeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCc--ceEEEEEeCCEEEEEEec--------CCEEEEEECCC--
Confidence            67777655321    24899999998765 445666543  233456667888888765        45555444433  


Q ss_pred             CeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCc-EEEEeee
Q 045675          293 GWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKR-NFILPID  341 (382)
Q Consensus       293 ~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~-~~~v~~~  341 (382)
                       -..+.+|+.. .....++..+|. +|+.... .+..+|++|.+ .+.+.+.
T Consensus        96 -~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg  145 (266)
T 2iwa_A           96 -LSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK  145 (266)
T ss_dssp             -TEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred             -CcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence             3667778765 223455665665 6665544 99999999976 4445543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=93.36  E-value=3.4  Score=35.32  Aligned_cols=191  Identities=11%  Similarity=0.066  Sum_probs=101.6

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +....+|-|.+....  ...+.++||. ++...++.+....        ...++..|+.. ...|.   .   .....+.
T Consensus        25 i~~d~~g~l~v~~~~--~~~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~~~~g-~l~v~---~---~~~~~v~   86 (300)
T 2qc5_A           25 ITSSEDGKVWFTQHK--ANKISSLDQS-GRIKEFEVPTPDA--------KVMCLIVSSLG-DIWFT---E---NGANKIG   86 (300)
T ss_dssp             EEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSSTTC--------CEEEEEECTTS-CEEEE---E---TTTTEEE
T ss_pred             eeECCCCCEEEEcCC--CCeEEEECCC-CceEEEECCCCCC--------cceeEEECCCC-CEEEE---e---cCCCeEE
Confidence            444556777666542  4578899998 6666543321110        13356666543 22221   1   1234677


Q ss_pred             EEECCCCCeeeecCC-CCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          183 VYSTSTGKWKEVAAG-TGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       183 vyss~t~~W~~~~~~-~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      +|+.. +.++..... ....+     .++.+  +|.+|+.....      ..|..+|.. .+...+.+|.... ....+.
T Consensus        87 ~~d~~-g~~~~~~~~~~~~~~-----~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~~~~~~~-~~~~i~  152 (300)
T 2qc5_A           87 KLSKK-GGFTEYPLPQPDSGP-----YGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYDLPNKGS-YPAFIT  152 (300)
T ss_dssp             EECTT-SCEEEEECSSTTCCE-----EEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEECSSTTC-CEEEEE
T ss_pred             EECCC-CCeEEecCCCCCCCC-----ccceECCCCCEEEEccCC------CeEEEECCC-CCEEEccCCCCCC-CceeEE
Confidence            78777 666544322 11111     22322  57776654322      489999998 6666665554221 233444


Q ss_pred             E-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccc--eEEeeCCcEEEEEcC--eEEEEeCCCC
Q 045675          260 S-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWP--VGSFRDSKIIMKSVD--QFFLFNPKTK  333 (382)
Q Consensus       260 ~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~--~~~~~~g~l~l~~~~--~~~~yd~~t~  333 (382)
                      . -+|+|++....        ...  |+.++.. + ... ..++ .....|  +.+..+|.|++....  .+..||+ ++
T Consensus       153 ~d~~g~l~v~~~~--------~~~--i~~~~~~-g~~~~-~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  218 (300)
T 2qc5_A          153 LGSDNALWFTENQ--------NNS--IGRITNT-GKLEE-YPLP-TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TG  218 (300)
T ss_dssp             ECTTSSEEEEETT--------TTE--EEEECTT-CCEEE-EECS-STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             ECCCCCEEEEecC--------CCe--EEEECCC-CcEEE-eeCC-CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CC
Confidence            4 46888776653        333  4555543 4 432 2222 122334  334446778888754  7999999 56


Q ss_pred             cEEEEe
Q 045675          334 RNFILP  339 (382)
Q Consensus       334 ~~~~v~  339 (382)
                      ++....
T Consensus       219 ~~~~~~  224 (300)
T 2qc5_A          219 EISEYD  224 (300)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            665553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=93.28  E-value=4  Score=35.83  Aligned_cols=208  Identities=12%  Similarity=-0.022  Sum_probs=105.5

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +.+|-|++....  ...++++||.+++...+......         ...++.+++... .. +.... .......+.+|+
T Consensus        53 ~~~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~---------~~~~i~~~~dg~-l~-v~~~~-~~~~~~~i~~~d  118 (333)
T 2dg1_A           53 DRQGQLFLLDVF--EGNIFKINPETKEIKRPFVSHKA---------NPAAIKIHKDGR-LF-VCYLG-DFKSTGGIFAAT  118 (333)
T ss_dssp             CTTSCEEEEETT--TCEEEEECTTTCCEEEEEECSSS---------SEEEEEECTTSC-EE-EEECT-TSSSCCEEEEEC
T ss_pred             CCCCCEEEEECC--CCEEEEEeCCCCcEEEEeeCCCC---------CcceEEECCCCc-EE-EEeCC-CCCCCceEEEEe
Confidence            346666654432  45799999999887665321111         133667776542 22 22111 101124678888


Q ss_pred             CCCCCeeee-cCC-CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eC
Q 045675          186 TSTGKWKEV-AAG-TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YD  262 (382)
Q Consensus       186 s~t~~W~~~-~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~  262 (382)
                      ..++.-+.. ... ......   .-.+.-+|.+|.....+........|..+|..+.++..+.-...   ....+.. -+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~---~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~d  192 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCID---DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTD  192 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEE---EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTT
T ss_pred             CCCCEEEEEEccCccCCccc---ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECCC
Confidence            877765422 211 111111   01122257776654321100113479999998776665421100   1223333 35


Q ss_pred             Ce-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEE-EEe--ecCC--cccceEEeeCCcEEEEEc--CeEEEEeCCCC
Q 045675          263 QS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRT-FNT--AFER--IAWPVGSFRDSKIIMKSV--DQFFLFNPKTK  333 (382)
Q Consensus       263 g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~-~~i--~~~~--~~~~~~~~~~g~l~l~~~--~~~~~yd~~t~  333 (382)
                      |+ |++....        ...+.+|.++...+ .... ..+  .+..  ...-+.+..+|.+++...  ..+..||++++
T Consensus       193 g~~l~v~~~~--------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          193 EKVLWVTETT--------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             SSEEEEEEGG--------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             CCEEEEEeCC--------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC
Confidence            65 6665543        56788888864312 2211 111  2222  223355556778888773  38999999777


Q ss_pred             cEEEEeee
Q 045675          334 RNFILPID  341 (382)
Q Consensus       334 ~~~~v~~~  341 (382)
                      ..+.+...
T Consensus       265 ~~~~~~~~  272 (333)
T 2dg1_A          265 PIGQILIP  272 (333)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEcC
Confidence            66666543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.18  E-value=4.8  Score=36.48  Aligned_cols=195  Identities=12%  Similarity=0.014  Sum_probs=99.1

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeec--CC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVA--AG  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~--~~  197 (382)
                      +..+.|||..+++...-...+.........  ....+.+.|....+-+.+-      .+..+.+|+..++.....-  ..
T Consensus       103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~  174 (402)
T 2aq5_A          103 DCTVMVWEIPDGGLVLPLREPVITLEGHTK--RVGIVAWHPTAQNVLLSAG------CDNVILVWDVGTGAAVLTLGPDV  174 (402)
T ss_dssp             TSEEEEEECCTTCCSSCBCSCSEEEECCSS--CEEEEEECSSBTTEEEEEE------TTSCEEEEETTTTEEEEEECTTT
T ss_pred             CCeEEEEEccCCCCccccCCceEEecCCCC--eEEEEEECcCCCCEEEEEc------CCCEEEEEECCCCCccEEEecCC
Confidence            458999998887543211111100000011  2345667776544433332      2347899998887554322  11


Q ss_pred             CCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeC-CCCCCCCCeeeEE-EeCCeEEEEEecCC
Q 045675          198 TGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA-MPELPTDCYVKAL-SYDQSLALAVYPGL  273 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P~~~~~~~~~l~-~~~g~L~~~~~~~~  273 (382)
                      ... ..    .++.+  +|.....+..+      ..|..+|+.+.+..... ...... ....+. .-+|++.+++..  
T Consensus       175 ~~~-~v----~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~--  240 (402)
T 2aq5_A          175 HPD-TI----YSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVFVSEGKILTTGFS--  240 (402)
T ss_dssp             CCS-CE----EEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECSSCSS-SCCEEEECSTTEEEEEEEC--
T ss_pred             CCC-ce----EEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccCCCCC-cceEEEEcCCCcEEEEecc--
Confidence            110 11    12222  56555555433      48999999886653322 222110 122233 236776666532  


Q ss_pred             CccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEc-C-eEEEEeCCCCc--EEEEe
Q 045675          274 GFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSV-D-QFFLFNPKTKR--NFILP  339 (382)
Q Consensus       274 ~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~-~-~~~~yd~~t~~--~~~v~  339 (382)
                      .   .....+.+|.+.....=.....++...-...+.+..++..+ +... + .+.+||+++++  ...+.
T Consensus       241 ~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~  308 (402)
T 2aq5_A          241 R---MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS  308 (402)
T ss_dssp             T---TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred             C---CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence            1   03678999998765221223333322223445556677754 4553 3 89999999887  55553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=93.14  E-value=4.7  Score=36.25  Aligned_cols=212  Identities=9%  Similarity=-0.045  Sum_probs=109.2

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      ..+|.|...+..  ...+..+++.++....+......         ...++.+|+..+...+.-      .....+++++
T Consensus        82 ~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~---------~p~glavd~~~g~ly~~d------~~~~~I~~~~  144 (349)
T 3v64_C           82 HRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLE---------SPGGLAVDWVHDKLYWTD------SGTSRIEVAN  144 (349)
T ss_dssp             TTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCS---------CCCEEEEETTTTEEEEEE------TTTTEEEEEE
T ss_pred             ccccEEEEEecc--CCceEEEecCCCCceEEEeCCCC---------CccEEEEecCCCeEEEEc------CCCCeEEEEc
Confidence            457777776654  45778888877664443222211         123677787655433221      1234778888


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEE-ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--C
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVA-VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY--D  262 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~  262 (382)
                      ..+..-+.+.......+.   .-++. .+|.+||.....     ...|.++|+....-..+- .... ...-.|+..  +
T Consensus       145 ~dG~~~~~l~~~~l~~P~---~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~-~~~~-~~PnGla~d~~~  214 (349)
T 3v64_C          145 LDGAHRKVLLWQSLEKPR---AIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIA-DTHL-FWPNGLTIDYAG  214 (349)
T ss_dssp             TTSCSCEEEECTTCSCEE---EEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESC-CSSC-SCEEEEEEETTT
T ss_pred             CCCCceEEEEeCCCCCcc---eEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEE-ECCC-CCcceEEEeCCC
Confidence            765543322211101111   11222 268999987543     258999999865444332 1111 123445553  7


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEe-eCCcEEEEEcC--eEEEEeCCCCc-EEEE
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSF-RDSKIIMKSVD--QFFLFNPKTKR-NFIL  338 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~-~~g~l~l~~~~--~~~~yd~~t~~-~~~v  338 (382)
                      |+|+++...        ...+....++.. . .+. .+. ..+..|.++. .++.||+....  ++..+|..+++ .+.+
T Consensus       215 ~~lY~aD~~--------~~~I~~~~~dG~-~-~~~-~~~-~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          215 RRMYWVDAK--------HHVIERANLDGS-H-RKA-VIS-QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             TEEEEEETT--------TTEEEEEETTSC-S-CEE-EEC-SSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CEEEEEECC--------CCEEEEEeCCCC-c-eEE-EEe-CCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            889988765        455555555433 1 111 122 1244555543 34557777654  89999965554 4444


Q ss_pred             eeeCCCCCeEEEEEEeecee
Q 045675          339 PIDSGMGYSYKVFTYVDSIV  358 (382)
Q Consensus       339 ~~~~~~~~~~~~~~y~~SLv  358 (382)
                      ......  -..+.+|.++.-
T Consensus       283 ~~~~~~--p~gi~v~~~~~q  300 (349)
T 3v64_C          283 RNKLHF--PMDIHTLHPQRQ  300 (349)
T ss_dssp             ECSCSC--CCCEEEECGGGS
T ss_pred             ccCCCC--CceEEEEccccC
Confidence            322111  133445555543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.12  E-value=3.9  Score=35.32  Aligned_cols=177  Identities=12%  Similarity=0.112  Sum_probs=90.1

Q ss_pred             ceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC--CeeeecC
Q 045675          120 GMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG--KWKEVAA  196 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~--~W~~~~~  196 (382)
                      ...++++|+.|++.+. ++......         .....+.|.. .+.+   .     ....+..|+. ++  .|+....
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~---------~~~~~~~pdG-~ilv---s-----~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWE---------CNSVAATKAG-EILF---S-----YSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCC---------CCEEEECTTS-CEEE---E-----CBSEEEEECT-TSCEEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCC---------CcCeEECCCC-CEEE---e-----CCCCEEEECC-CCCEEEEEcCC
Confidence            5688999998988543 33322100         1123344433 2222   2     1236888888 44  5765442


Q ss_pred             CCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCC---Ceee-EEEeCCeEEEEEecC
Q 045675          197 GTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTD---CYVK-ALSYDQSLALAVYPG  272 (382)
Q Consensus       197 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~---~~~~-l~~~~g~L~~~~~~~  272 (382)
                      ... ...   ...+..+|.++......     ...|++||...+....+.+......   .... ....+|.+.++... 
T Consensus        75 ~~~-~~~---~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-  144 (276)
T 3no2_A           75 AGC-EMQ---TARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-  144 (276)
T ss_dssp             TTC-EEE---EEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-
T ss_pred             CCc-ccc---ccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-
Confidence            111 111   13445577777665441     2478899986664444443322110   1111 12346776655443 


Q ss_pred             CCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcEEE
Q 045675          273 LGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRNFI  337 (382)
Q Consensus       273 ~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~~~  337 (382)
                             ...+.+|..+ .+. |....  +  ..........+|.+++...+  +++.+|++|++..+
T Consensus       145 -------~~~v~~~d~~-G~~~w~~~~--~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          145 -------TSEVREIAPN-GQLLNSVKL--S--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             -------TTEEEEECTT-SCEEEEEEC--S--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred             -------CCEEEEECCC-CCEEEEEEC--C--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence                   4556655554 312 76432  2  11111233456777766554  89999999776543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=92.95  E-value=5.4  Score=36.42  Aligned_cols=189  Identities=11%  Similarity=0.012  Sum_probs=96.8

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      .++|++....    .+...++.+++...+-....          ...++.+|+..+...++-+      ....+..++..
T Consensus        87 ~~~l~~~~~~----~I~~i~~~~~~~~~~~~~~~----------~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~  146 (386)
T 3v65_B           87 EPVLLFANRI----DIRQVLPHRSEYTLLLNNLE----------NAIALDFHHRRELVFWSDV------TLDRILRANLN  146 (386)
T ss_dssp             CCEEEEECBS----CEEEECTTSCCCEEEECSCS----------CEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             cceeEeecCc----cceeeccCCCcEEEEecCCC----------ccEEEEEecCCCeEEEEeC------CCCcEEEEecC
Confidence            4555544432    56666776655444322111          2457888876654433321      23467778877


Q ss_pred             CCCeeeecCCCCeeEEeCCcceEE-ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--CCe
Q 045675          188 TGKWKEVAAGTGSCVIYGGQDAVA-VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY--DQS  264 (382)
Q Consensus       188 t~~W~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~g~  264 (382)
                      +...+.+.......+.   .-++- .+|.+||.....      ..|.++|+....-..+.. ... .....+++.  +|.
T Consensus       147 g~~~~~~~~~~~~~p~---glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~~-~~l-~~P~giavdp~~g~  215 (386)
T 3v65_B          147 GSNVEEVVSTGLESPG---GLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLW-QSL-EKPRAIALHPMEGT  215 (386)
T ss_dssp             SCCEEEEECSSCSCCC---CEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEEC-SSC-SCEEEEEEETTTTE
T ss_pred             CCCcEEEEeCCCCCcc---EEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEeec-CCC-CCCcEEEEEcCCCe
Confidence            6655443221000000   12222 368999987654      489999997654433321 111 123445554  678


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEE--e-eCCcEEEEEcC--eEEEEeCCCCcEEEE
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGS--F-RDSKIIMKSVD--QFFLFNPKTKRNFIL  338 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~--~-~~g~l~l~~~~--~~~~yd~~t~~~~~v  338 (382)
                      |++....       ....+....++..  -.++ .+. ..+..|.++  . .++.||+....  .+..+|+.....+.+
T Consensus       216 ly~td~~-------~~~~I~r~~~dG~--~~~~-~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          216 IYWTDWG-------NTPRIEASSMDGS--GRRI-IAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             EEEEECS-------SSCEEEEEETTSC--SCEE-EEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred             EEEeccC-------CCCEEEEEeCCCC--CcEE-EEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence            8877654       1244443333332  1111 111 233445444  3 34557777654  899999876554444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.87  E-value=4.4  Score=35.18  Aligned_cols=193  Identities=10%  Similarity=0.016  Sum_probs=99.6

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceec-cCCCCC-ccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSL-TESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEV  183 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~v  183 (382)
                      +-+|-+++...   ...+.|||..+++... +..... .+    ..  ....+.+.+.. .+-+++.      .+..+.+
T Consensus        60 ~~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~----~~--~v~~~~~~~~~-~~l~~~~------~d~~i~~  123 (337)
T 1gxr_A           60 SNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNR----DN--YIRSCKLLPDG-CTLIVGG------EASTLSI  123 (337)
T ss_dssp             CSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCT----TS--BEEEEEECTTS-SEEEEEE------SSSEEEE
T ss_pred             ecCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCC----CC--cEEEEEEcCCC-CEEEEEc------CCCcEEE
Confidence            33555444433   3588999987765321 111000 01    11  23456667643 3333322      2348999


Q ss_pred             EECCCCCeeeecCCC-CeeEEeCCcceEE--ECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEE
Q 045675          184 YSTSTGKWKEVAAGT-GSCVIYGGQDAVA--VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKAL  259 (382)
Q Consensus       184 yss~t~~W~~~~~~~-~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~  259 (382)
                      |+..++......... .....    ..+.  -+|.....+..+      ..|..+|+.+.+.... .....   ....+.
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~~---~i~~~~  190 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPAC----YALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD---GASCID  190 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCE----EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS---CEEEEE
T ss_pred             EECCCCCcceeeecccCCCce----EEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeecccC---ceEEEE
Confidence            999887654332220 10001    1111  245555554433      3688899987654332 32211   223333


Q ss_pred             Ee-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCcEE
Q 045675          260 SY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRNF  336 (382)
Q Consensus       260 ~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~~  336 (382)
                      .. +|.+.++...        ...+.+|.++..   .....+....-...+.+..++..++.. .+ .+..||+++++..
T Consensus       191 ~~~~~~~l~~~~~--------dg~i~~~d~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~  259 (337)
T 1gxr_A          191 ISNDGTKLWTGGL--------DNTVRSWDLREG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             ECTTSSEEEEEET--------TSEEEEEETTTT---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             ECCCCCEEEEEec--------CCcEEEEECCCC---ceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE
Confidence            32 5666555554        678999988765   333344433334445556677755444 34 8999999988765


Q ss_pred             EE
Q 045675          337 IL  338 (382)
Q Consensus       337 ~v  338 (382)
                      .+
T Consensus       260 ~~  261 (337)
T 1gxr_A          260 QL  261 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.75  E-value=3.5  Score=36.43  Aligned_cols=114  Identities=8%  Similarity=-0.006  Sum_probs=66.2

Q ss_pred             CceEEEEeecccccccccEEEEEECCCceeeEeCC-CCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAM-PELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~-P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      +|.+|.....+    ....|..||+.+++.+.+.. +... .....++ .-+|+..++...       ....+.+|.++.
T Consensus        50 dg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~-------~~~~v~v~~~~~  117 (347)
T 3hfq_A           50 KDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVVAPG-TPPAYVAVDEARQLVYSANY-------HKGTAEVMKIAA  117 (347)
T ss_dssp             TCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEEEES-CCCSEEEEETTTTEEEEEET-------TTTEEEEEEECT
T ss_pred             CCeEEEEEecC----CCceEEEEEecCCcEEEeeeeecCC-CCCEEEEECCCCCEEEEEeC-------CCCEEEEEEeCC
Confidence            78888776532    12489999998877766532 1111 1223344 346764444443       267899999976


Q ss_pred             CCCeeEEEEeecCCc----------ccceEEeeCCcEEEEEcC--eEEEEeCC-CCcEEEE
Q 045675          291 GKGWTRTFNTAFERI----------AWPVGSFRDSKIIMKSVD--QFFLFNPK-TKRNFIL  338 (382)
Q Consensus       291 ~~~W~~~~~i~~~~~----------~~~~~~~~~g~l~l~~~~--~~~~yd~~-t~~~~~v  338 (382)
                      ......+..+.....          ..-+.+..+|++++....  .+..||++ ++++..+
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            412454444533211          222566677886555543  89999988 5666544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.71  E-value=4.1  Score=36.64  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             ceEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCC-------CCCCeeeEEEeCCeEEEEEecCCCccCC
Q 045675          208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPEL-------PTDCYVKALSYDQSLALAVYPGLGFRSR  278 (382)
Q Consensus       208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~-------~~~~~~~l~~~~g~L~~~~~~~~~~~~~  278 (382)
                      .++..+|.+|.....+       .|.+||..+.+  |+. .++..       ........+..+|.|++....       
T Consensus        48 ~p~v~~~~v~~~~~~g-------~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------  112 (376)
T 3q7m_A           48 HPALADNVVYAADRAG-------LVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------  112 (376)
T ss_dssp             CCEEETTEEEEECTTS-------EEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------
T ss_pred             ccEEECCEEEEEcCCC-------eEEEEEccCCceeeee-cCccccccccccCcccccCceEeCCEEEEEcCC-------
Confidence            6778899999876544       89999997654  443 33321       101223455678888875543       


Q ss_pred             CCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          279 LSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       279 ~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                        ..+..+-.+..+. |...  ++-.....|+.  .++.|++...+ .++.||.++++..+
T Consensus       113 --g~l~a~d~~tG~~~W~~~--~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          113 --AQVYALNTSDGTVAWQTK--VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW  167 (376)
T ss_dssp             --SEEEEEETTTCCEEEEEE--CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             --CEEEEEECCCCCEEEEEe--CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence              2333333333312 8643  22111233332  35667776665 89999999987544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.48  E-value=6.4  Score=36.14  Aligned_cols=177  Identities=15%  Similarity=0.060  Sum_probs=91.3

Q ss_pred             EEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccc
Q 045675          153 SLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNE  229 (382)
Q Consensus       153 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~  229 (382)
                      ..|+.+|...+...+.-      .....+++++..+..-+.+.......     ..++.+   +|.|||.....     .
T Consensus       161 p~glavD~~~~~lY~~d------~~~~~I~~~~~~g~~~~~l~~~~~~~-----P~~iavdp~~g~ly~td~~~-----~  224 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTD------SVLGTVSVADTKGVKRKTLFRENGSK-----PRAIVVDPVHGFMYWTDWGT-----P  224 (400)
T ss_dssp             EEEEEEETTTTEEEEEE------TTTTEEEEECTTTCSEEEEEECSSCC-----EEEEEEETTTTEEEEEECSS-----S
T ss_pred             cccEEEEecCCceEEEE------CCCCeEEEEeCCCCceEEEEeCCCCC-----cceEEEecccCeEEEEeCCC-----C
Confidence            34788887655433221      12346777777665544332211001     123333   68999987543     2


Q ss_pred             cEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCccc
Q 045675          230 KFVVSYDMNLELFWRTAMPELPTDCYVKALSY--DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAW  307 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~  307 (382)
                      ..|..+|+....-..+.. ... ...-.|+..  +++||++...        ...|....++.. . .++..-....+..
T Consensus       225 ~~I~~~~~dG~~~~~~~~-~~l-~~P~glavd~~~~~lY~aD~~--------~~~I~~~d~dG~-~-~~~~~~~~~~l~~  292 (400)
T 3p5b_L          225 AKIKKGGLNGVDIYSLVT-ENI-QWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGG-N-RKTILEDEKRLAH  292 (400)
T ss_dssp             CCEEEEETTSCSCEEEEC-SSC-SCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSC-C-CEEEEECSSTTSS
T ss_pred             CEEEEEeCCCCccEEEEE-CCC-CceEEEEEEeCCCEEEEEECC--------CCEEEEEeCCCC-c-cEEEEeCCCCCCC
Confidence            479999997654433311 111 133445554  7889988765        444444444332 1 1111111123456


Q ss_pred             ceEEeeCC-cEEEEEcC--eEEEEeCCCCc-EEEEeeeCCCCCeEEEEEEeeceee
Q 045675          308 PVGSFRDS-KIIMKSVD--QFFLFNPKTKR-NFILPIDSGMGYSYKVFTYVDSIVA  359 (382)
Q Consensus       308 ~~~~~~~g-~l~l~~~~--~~~~yd~~t~~-~~~v~~~~~~~~~~~~~~y~~SLv~  359 (382)
                      |.++.-.+ .||.....  .|..+|..+++ .+.+...  ...-..+.+|.+..-|
T Consensus       293 P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~--~~~p~~i~v~~~~~qp  346 (400)
T 3p5b_L          293 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMVLFHNLTQP  346 (400)
T ss_dssp             EEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECS--CSCEEEEEEESGGGSC
T ss_pred             CEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecC--CCCCceEEEEeeccCC
Confidence            76665434 46666544  89999976664 4444322  1113556667766544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.44  E-value=4.4  Score=34.16  Aligned_cols=185  Identities=11%  Similarity=0.053  Sum_probs=97.0

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +.+|.|.+...   ...++++||.++....++.....         ...++.+|+...   +.. ...   ....+.+|+
T Consensus        75 ~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~~~---------~p~~i~~~~~g~---l~v-~~~---~~~~i~~~~  135 (270)
T 1rwi_B           75 DGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDGLN---------YPEGLAVDTQGA---VYV-ADR---GNNRVVKLA  135 (270)
T ss_dssp             CTTCCEEEEET---TTEEEEECTTCSCCEECCCCSCS---------SEEEEEECTTCC---EEE-EEG---GGTEEEEEC
T ss_pred             CCCCCEEEEcC---CCEEEEEeCCCceEeeeecCCcC---------CCcceEECCCCC---EEE-EEC---CCCEEEEEE
Confidence            44676666554   34789999988776655433211         133677777442   221 111   223677776


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-C
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-D  262 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~  262 (382)
                      .++......... . ..  . ..++.+  +|.+|+.....      ..|..||..+...........  .....++.. +
T Consensus       136 ~~~~~~~~~~~~-~-~~--~-p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~  202 (270)
T 1rwi_B          136 AGSKTQTVLPFT-G-LN--D-PDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTDI--TAPWGIAVDEA  202 (270)
T ss_dssp             TTCCSCEECCCC-S-CC--S-CCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSSC--CSEEEEEECTT
T ss_pred             CCCceeEeeccc-c-CC--C-ceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccCC--CCceEEEECCC
Confidence            555443322111 0 00  0 123333  58877665432      489999998876544322211  133445543 6


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc--eEEeeCCcEEEEEcC--eEEEEeCCCCc
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP--VGSFRDSKIIMKSVD--QFFLFNPKTKR  334 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~--~~~~~~g~l~l~~~~--~~~~yd~~t~~  334 (382)
                      |.|++....        ...+.+|..+..  -..  .+....+..|  +.+..+|.|++....  ++..|++...+
T Consensus       203 g~l~v~~~~--------~~~v~~~~~~~~--~~~--~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          203 GTVYVTEHN--------TNQVVKLLAGST--TST--VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CCEEEEETT--------TSCEEEECTTCS--CCE--ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCEEEEECC--------CCcEEEEcCCCC--cce--eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            778777654        445665554332  111  1222223334  444456778777654  88888887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.43  E-value=6.5  Score=36.10  Aligned_cols=187  Identities=12%  Similarity=0.045  Sum_probs=99.3

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCe
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGS  200 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~  200 (382)
                      ..+++||..|++...+...+.          ....+.+.|.+. +-++.. .  ......+.+++..++..+.+......
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~----------~~~~~~~spdg~-~la~~~-~--~~g~~~i~~~d~~~~~~~~l~~~~~~  268 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR----------HNGAPAFSPDGS-KLAFAL-S--KTGSLNLYVMDLASGQIRQVTDGRSN  268 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS----------CEEEEEECTTSS-EEEEEE-C--TTSSCEEEEEETTTCCEEECCCCSSC
T ss_pred             cEEEEEECCCCcEEEeecCCC----------cccCEEEcCCCC-EEEEEE-e--cCCCceEEEEECCCCCEEeCcCCCCc
Confidence            479999999998776654332          133566677543 322222 1  12345788899988876554333211


Q ss_pred             eEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCC
Q 045675          201 CVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSR  278 (382)
Q Consensus       201 ~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~  278 (382)
                      ..    .....-+|. +++....+    ....|..+|+.+.+...+.....   ....+.. -+|+..++...  ..   
T Consensus       269 ~~----~~~~spdg~~l~~~s~~~----g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdG~~l~~~~~--~~---  332 (415)
T 2hqs_A          269 NT----EPTWFPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRITWEGS---QNQDADVSSDGKFMVMVSS--NG---  332 (415)
T ss_dssp             EE----EEEECTTSSEEEEEECTT----SSCEEEEEETTSSCCEECCCSSS---EEEEEEECTTSSEEEEEEE--CS---
T ss_pred             cc----ceEECCCCCEEEEEECCC----CCcEEEEEECCCCCEEEEecCCC---cccCeEECCCCCEEEEEEC--cC---
Confidence            10    011122565 44444333    13478889998877554432211   1222332 36664444443  10   


Q ss_pred             CCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEeee
Q 045675          279 LSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       279 ~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~~~  341 (382)
                      ....+.+|.++.. ...   .+........+.+..+|. |++...+    .++.+|++++..+.+..+
T Consensus       333 g~~~i~~~d~~~~-~~~---~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~  396 (415)
T 2hqs_A          333 GQQHIAKQDLATG-GVQ---VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  396 (415)
T ss_dssp             SCEEEEEEETTTC-CEE---ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             CceEEEEEECCCC-CEE---EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence            2346666666554 222   222111234455567777 4444432    699999998888877544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.34  E-value=5.6  Score=35.15  Aligned_cols=188  Identities=9%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCC-CCeEEEEEEeecCCCCCEEEEEECCCCCe-eeecCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDT-NDYVLVRIVNFQARYDAIAEVYSTSTGKW-KEVAAG  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~vyss~t~~W-~~~~~~  197 (382)
                      ...+.|||..++++..+-......    .   ....+.+.+.. +.+.+++.      .+..+.+|+..++.- ......
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~----~---~v~~~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHS----A---SVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCS----S---CEEEEEECCGGGCSEEEEEE------TTSEEEEEECCTTSCCCEEEEE
T ss_pred             CCEEEEEEcCCCceeEeeeecCCC----c---ceEEEEeCCCCCCCEEEEec------CCCcEEEEecCCCCceeeEEec
Confidence            458999999888644332222111    0   23356666653 34433332      234788998887632 111100


Q ss_pred             CCeeEEeCCcceEEE--------------CceEEEEeecccccccccEEEEEECCCc--eeeEe-CCCCCCCCCeeeEEE
Q 045675          198 TGSCVIYGGQDAVAV--------------KGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWRT-AMPELPTDCYVKALS  260 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~--------------~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i-~~P~~~~~~~~~l~~  260 (382)
                      ......   ....+.              +|.+...+..+      ..|..+|+.+.  .+..+ .+.... .....+..
T Consensus       145 ~~~~~v---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h~-~~v~~~~~  214 (379)
T 3jrp_A          145 AHAIGV---NSASWAPATIEEDGEHNGTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAW  214 (379)
T ss_dssp             CCTTCE---EEEEECCCC----------CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEE
T ss_pred             CCCCce---EEEEEcCccccccccccCCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEeccc-CcEeEEEE
Confidence            000000   011111              35555555443      36777887543  33333 222111 12233333


Q ss_pred             e-C---CeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeec---CCcccceEEeeCCcE-EEEEcC-eEEEEeC
Q 045675          261 Y-D---QSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAF---ERIAWPVGSFRDSKI-IMKSVD-QFFLFNP  330 (382)
Q Consensus       261 ~-~---g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~---~~~~~~~~~~~~g~l-~l~~~~-~~~~yd~  330 (382)
                      . +   |.+.+....        ...+.||.+..... +.. ..+..   .....-+.+..+|.. +....+ .+.+||+
T Consensus       215 sp~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQ--------DRTCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             CCCCSSSEEEEEEET--------TSCEEEEEESSTTSCCEE-EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CCCCCCCCeEEEEeC--------CCEEEEEeCCCCCcccee-eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            2 3   566665554        67899999987633 332 22222   122444566667774 444455 8889988


Q ss_pred             CC-CcEEEEe
Q 045675          331 KT-KRNFILP  339 (382)
Q Consensus       331 ~t-~~~~~v~  339 (382)
                      ++ ++|+.+.
T Consensus       286 ~~~~~~~~~~  295 (379)
T 3jrp_A          286 NLEGKWEPAG  295 (379)
T ss_dssp             EETTEEEEEE
T ss_pred             CCCCcccccc
Confidence            74 4566653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.31  E-value=5.2  Score=34.68  Aligned_cols=178  Identities=10%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.+||..+++...........     .  ....+.+.+.. .+-+++.      .+..+.+|+..++.....-....
T Consensus       118 d~~i~~~d~~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~-~~l~~~~------~dg~v~~~d~~~~~~~~~~~~~~  183 (337)
T 1gxr_A          118 ASTLSIWDLAAPTPRIKAELTSSA-----P--ACYALAISPDS-KVCFSCC------SDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSS-----S--CEEEEEECTTS-SEEEEEE------TTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCcEEEEECCCCCcceeeecccCC-----C--ceEEEEECCCC-CEEEEEe------CCCcEEEEeCCCCceeeeeeccc
Confidence            458899998887633221111110     0  13356666632 3333221      23468899988764332211111


Q ss_pred             eeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEE-eCCeEEEEEecCCCc
Q 045675          200 SCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALS-YDQSLALAVYPGLGF  275 (382)
Q Consensus       200 ~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~  275 (382)
                      . ..    ..+.+  +|.....+..+      ..|..+|+.+.+-.. +..+.    ....+.. .+|.+.++...    
T Consensus       184 ~-~i----~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~----  244 (337)
T 1gxr_A          184 D-GA----SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTS----QIFSLGYCPTGEWLAVGME----  244 (337)
T ss_dssp             S-CE----EEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSS----CEEEEEECTTSSEEEEEET----
T ss_pred             C-ce----EEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCC----ceEEEEECCCCCEEEEEcC----
Confidence            0 01    12222  56555554433      488999998765433 23222    2223333 35666555554    


Q ss_pred             cCCCCCeEEEEEECCCCCeeEEEEe-ecCCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCcEEEE
Q 045675          276 RSRLSNRFELWVMNEGKGWTRTFNT-AFERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       276 ~~~~~~~~~iW~l~~~~~W~~~~~i-~~~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~~~v  338 (382)
                          ...+.+|.+... .  . ..+ ........+.+..++.+++.. .+ .+.+||+++++....
T Consensus       245 ----~~~i~~~~~~~~-~--~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          245 ----SSNVEVLHVNKP-D--K-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             ----TSCEEEEETTSS-C--E-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ----CCcEEEEECCCC-C--e-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence                567899988775 2  1 112 112224445556677755444 34 899999999876543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=92.26  E-value=5.4  Score=34.77  Aligned_cols=199  Identities=10%  Similarity=0.006  Sum_probs=100.2

Q ss_pred             eccCc-eEEEeeCCCCceeEEEEcccccce-e-ccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEE
Q 045675          105 GSCNG-LLCLDVSSAFGMAFVLWNPATNEF-K-GLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIA  181 (382)
Q Consensus       105 ~s~~G-ll~~~~~~~~~~~~~V~NP~T~~~-~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  181 (382)
                      -+-+| .|++....  ...++++|+.+++. . .++....          ...++.++|..+ +-+  ... .......+
T Consensus        47 ~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~----------~~~~~~~s~dg~-~l~--~~~-~~~~~~~i  110 (331)
T 3u4y_A           47 ITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQEGQS----------SMADVDITPDDQ-FAV--TVT-GLNHPFNM  110 (331)
T ss_dssp             ECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEECSS----------CCCCEEECTTSS-EEE--ECC-CSSSSCEE
T ss_pred             EcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecccCCC----------CccceEECCCCC-EEE--Eec-CCCCcccE
Confidence            34455 45544443  45899999999875 2 2222111          111255666433 322  221 11122389


Q ss_pred             EEEECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCce-e-eE--eCCCCCCCCCee
Q 045675          182 EVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLEL-F-WR--TAMPELPTDCYV  256 (382)
Q Consensus       182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~-~-~~--i~~P~~~~~~~~  256 (382)
                      .+|+..++.-...-.... ...   ...+.-+|. +|......     ...|..||+.... . ..  ..++...  ...
T Consensus       111 ~v~d~~~~~~~~~~~~~~-~~~---~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~  179 (331)
T 3u4y_A          111 QSYSFLKNKFISTIPIPY-DAV---GIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQEFISGGT--RPF  179 (331)
T ss_dssp             EEEETTTTEEEEEEECCT-TEE---EEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEEEEECSSS--SEE
T ss_pred             EEEECCCCCeEEEEECCC-Ccc---ceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCCccccCCC--Ccc
Confidence            999988775433211110 011   122233565 55544332     1126666654321 1 10  1112211  223


Q ss_pred             eEEE-eCCe-EEEEEecCCCccCCCCCeEEEEEECCCCCe-eEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeC
Q 045675          257 KALS-YDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKGW-TRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNP  330 (382)
Q Consensus       257 ~l~~-~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W-~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~  330 (382)
                      .+.. -+|+ |++....        ...+.+|.++.. .. ..+..++.......+.+..+|. |++....  .+.+||+
T Consensus       180 ~~~~spdg~~l~v~~~~--------~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLI--------GNSIGILETQNP-ENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EEEECTTSSEEEEEETT--------TTEEEEEECSST-TSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ceEECCCCCEEEEEeCC--------CCeEEEEECCCC-cccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            3333 3676 5554443        678999998755 22 2245555444445577777888 5555543  7999999


Q ss_pred             CCCcEEEEe
Q 045675          331 KTKRNFILP  339 (382)
Q Consensus       331 ~t~~~~~v~  339 (382)
                      ++++.+.+.
T Consensus       251 ~~~~~~~~~  259 (331)
T 3u4y_A          251 LSGTLSFVK  259 (331)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCceeeec
Confidence            999886653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=92.14  E-value=5.5  Score=34.65  Aligned_cols=145  Identities=10%  Similarity=-0.024  Sum_probs=78.0

Q ss_pred             CEEEEEECCC-CCeeeec--CC---CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECC--Cceee---Ee-
Q 045675          179 AIAEVYSTST-GKWKEVA--AG---TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMN--LELFW---RT-  245 (382)
Q Consensus       179 ~~~~vyss~t-~~W~~~~--~~---~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~--~~~~~---~i-  245 (382)
                      ..+.+|+..+ +......  ..   ......   .-...-+|. +|......      ..|..+|+.  +.++.   .+ 
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pdg~~l~~~~~~~------~~i~~~~~~~~~g~~~~~~~~~  221 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPR---HMVFHPNEQYAYCVNELN------SSVDVWELKDPHGNIECVQTLD  221 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEE---EEEECTTSSEEEEEETTT------TEEEEEESSCTTSCCEEEEEEE
T ss_pred             CEEEEEEecCCCceeeecccccccCCCCCcc---eEEECCCCCEEEEEeCCC------CEEEEEEecCCCCcEEEEeecc
Confidence            4788898887 6665332  11   111111   111222565 44443222      478888884  34443   22 


Q ss_pred             CCCCCCCC--CeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEE
Q 045675          246 AMPELPTD--CYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMK  320 (382)
Q Consensus       246 ~~P~~~~~--~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~  320 (382)
                      .+|.....  ....+.. -+|+..++...       ....+.+|.++...+ +..+..++.......+.+..+|. |++.
T Consensus       222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          222 MMPENFSDTRWAADIHITPDGRHLYACDR-------TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEET-------TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             ccCccccccCCccceEECCCCCEEEEEec-------CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEe
Confidence            34443211  1222333 35654444443       267899999986434 77777776544345567777777 5555


Q ss_pred             EcC--eEEEE--eCCCCcEEEEe
Q 045675          321 SVD--QFFLF--NPKTKRNFILP  339 (382)
Q Consensus       321 ~~~--~~~~y--d~~t~~~~~v~  339 (382)
                      ...  .+.+|  |.++++++.+.
T Consensus       295 ~~~~~~v~v~~~d~~~g~~~~~~  317 (343)
T 1ri6_A          295 GQKSHHISVYEIVGEQGLLHEKG  317 (343)
T ss_dssp             CTTTCEEEEEEEETTTTEEEEEE
T ss_pred             cCCCCeEEEEEEcCCCceeeEcc
Confidence            532  55555  88888888774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=92.00  E-value=5.2  Score=34.01  Aligned_cols=158  Identities=10%  Similarity=-0.000  Sum_probs=92.5

Q ss_pred             EEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccE
Q 045675          152 VSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKF  231 (382)
Q Consensus       152 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~  231 (382)
                      ..-|+-|++   ..  +-... +......+.+++..+++=...-..+... + + ......++.+|-+....      ..
T Consensus        22 ftqGL~~~~---~~--Lyest-G~~g~S~v~~vD~~tgkv~~~~~l~~~~-f-g-eGi~~~~~~ly~ltw~~------~~   86 (243)
T 3mbr_X           22 FTEGLFYLR---GH--LYEST-GETGRSSVRKVDLETGRILQRAEVPPPY-F-G-AGIVAWRDRLIQLTWRN------HE   86 (243)
T ss_dssp             CEEEEEEET---TE--EEEEE-CCTTSCEEEEEETTTCCEEEEEECCTTC-C-E-EEEEEETTEEEEEESSS------SE
T ss_pred             ccccEEEEC---CE--EEEEC-CCCCCceEEEEECCCCCEEEEEeCCCCc-c-e-eEEEEeCCEEEEEEeeC------CE
Confidence            355888886   21  11121 1223468999999998644332222211 1 1 24456688999998765      58


Q ss_pred             EEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc-----
Q 045675          232 VVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI-----  305 (382)
Q Consensus       232 i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~-----  305 (382)
                      +.+||..+-+- ..++.|..    ...|+..+++|++....         .  .|++++-. .-..+.+|....-     
T Consensus        87 v~v~D~~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs---------~--~l~~iDp~-t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGE----GWALTSDDSHLYMSDGT---------A--VIRKLDPD-TLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSC----CCEEEECSSCEEEECSS---------S--EEEEECTT-TCCEEEEEECEETTEECC
T ss_pred             EEEEECCcCcEEEEEeCCCC----ceEEeeCCCEEEEECCC---------C--eEEEEeCC-CCeEEEEEEEccCCcccc
Confidence            99999987543 55666542    35566666777775432         2  46777754 2244555543211     


Q ss_pred             -ccceEEeeCCcEEEEEc--CeEEEEeCCCCcEEE-Eeee
Q 045675          306 -AWPVGSFRDSKIIMKSV--DQFFLFNPKTKRNFI-LPID  341 (382)
Q Consensus       306 -~~~~~~~~~g~l~l~~~--~~~~~yd~~t~~~~~-v~~~  341 (382)
                       ..-+.. .+|+||....  +.+.+.|+++++... +.+.
T Consensus       151 ~lNeLe~-~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~  189 (243)
T 3mbr_X          151 NLNELEW-VNGELLANVWLTSRIARIDPASGKVVAWIDLQ  189 (243)
T ss_dssp             CEEEEEE-ETTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred             cceeeEE-eCCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence             112222 3788886653  399999999998654 4543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=91.92  E-value=4.9  Score=36.07  Aligned_cols=132  Identities=10%  Similarity=0.101  Sum_probs=70.1

Q ss_pred             EEEEEECCCC--CeeeecCCC-------CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCC
Q 045675          180 IAEVYSTSTG--KWKEVAAGT-------GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMP  248 (382)
Q Consensus       180 ~~~vyss~t~--~W~~~~~~~-------~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P  248 (382)
                      .+..|+..++  .|+......       .....   ...+..+|.+|.....+       .|.+||..+.+  |+. .++
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~g-------~l~a~d~~tG~~~W~~-~~~  132 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLS---GGVTVSGGHVYIGSEKA-------QVYALNTSDGTVAWQT-KVA  132 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCSCCCCCEE---EEEEEETTEEEEEETTS-------EEEEEETTTCCEEEEE-ECS
T ss_pred             eEEEEEccCCceeeeecCccccccccccCcccc---cCceEeCCEEEEEcCCC-------EEEEEECCCCCEEEEE-eCC
Confidence            6777777665  576543221       11111   24566788888765444       89999997654  433 333


Q ss_pred             CCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC---eeEEEEeec---CCcccceEEeeCCcEEEEEc
Q 045675          249 ELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG---WTRTFNTAF---ERIAWPVGSFRDSKIIMKSV  322 (382)
Q Consensus       249 ~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~---W~~~~~i~~---~~~~~~~~~~~~g~l~l~~~  322 (382)
                      ...   .......+|.|++....         .  .|+.++-..|   |.....-+.   .....|..  .++.|++...
T Consensus       133 ~~~---~~~p~~~~~~v~v~~~~---------g--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~  196 (376)
T 3q7m_A          133 GEA---LSRPVVSDGLVLIHTSN---------G--QLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGD  196 (376)
T ss_dssp             SCC---CSCCEEETTEEEEECTT---------S--EEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCT
T ss_pred             Cce---EcCCEEECCEEEEEcCC---------C--eEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcC
Confidence            322   11223446766654332         2  3444442223   765432111   11122332  2555666665


Q ss_pred             C-eEEEEeCCCCcEEEE
Q 045675          323 D-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       323 ~-~~~~yd~~t~~~~~v  338 (382)
                      + .++.||+++++...-
T Consensus       197 ~g~l~~~d~~tG~~~w~  213 (376)
T 3q7m_A          197 NGRVSAVLMEQGQMIWQ  213 (376)
T ss_dssp             TTEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCCcEEEE
Confidence            5 899999998876543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.78  E-value=5.3  Score=34.43  Aligned_cols=109  Identities=9%  Similarity=-0.011  Sum_probs=67.5

Q ss_pred             EEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE
Q 045675          210 VAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM  288 (382)
Q Consensus       210 v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l  288 (382)
                      .+.+|.||.-++..      ..|..+|+.+.+. ..+ +|...  ....+...+++|+++...        ...+.++-.
T Consensus        61 ~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~--FgeGit~~g~~Ly~ltw~--------~~~v~V~D~  123 (268)
T 3nok_A           61 VFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNI--FAEGLASDGERLYQLTWT--------EGLLFTWSG  123 (268)
T ss_dssp             EEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTC--CEEEEEECSSCEEEEESS--------SCEEEEEET
T ss_pred             EEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCc--ceeEEEEeCCEEEEEEcc--------CCEEEEEEC
Confidence            34456666655543      3599999998766 445 66543  234467778899988654        444444444


Q ss_pred             CCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC-eEEEEeCCCCcEE-EEee
Q 045675          289 NEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-QFFLFNPKTKRNF-ILPI  340 (382)
Q Consensus       289 ~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-~~~~yd~~t~~~~-~v~~  340 (382)
                      +..   ..+.+|+...-  ..++..+|. |++.... ++..+|++|.+.. .+.+
T Consensus       124 ~Tl---~~~~ti~~~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          124 MPP---QRERTTRYSGE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             TTT---EEEEEEECSSC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CcC---cEEEEEeCCCc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            443   66777776432  344444555 5555534 9999999997644 4544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=91.69  E-value=5.9  Score=34.06  Aligned_cols=192  Identities=11%  Similarity=0.019  Sum_probs=102.9

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCC-C
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAG-T  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~-~  198 (382)
                      ...++.+||.++ ...+.....          ...++.+++... . ++. ..    ....+.+|+..++..+..... .
T Consensus        49 ~~~i~~~~~~~~-~~~~~~~~~----------~~~~l~~~~dg~-l-~v~-~~----~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           49 QNRTWAWSDDGQ-LSPEMHPSH----------HQNGHCLNKQGH-L-IAC-SH----GLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             GTEEEEEETTSC-EEEEESSCS----------SEEEEEECTTCC-E-EEE-ET----TTTEEEEECSTTCCEEEEECEET
T ss_pred             CCEEEEEECCCC-eEEEECCCC----------CcceeeECCCCc-E-EEE-ec----CCCeEEEEcCCCCcEEEEeeccC
Confidence            457999999988 555443221          133677777543 2 222 11    234788888888877654322 1


Q ss_pred             CeeEEeCCcceEEECceEEEEeec-cc----------ccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEE
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANG-IG----------VLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLA  266 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~-~~----------~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~  266 (382)
                      .........-.+.-+|.+|+.... +.          .......|..+|.. .+...+.-...   ....++. -+|++.
T Consensus       111 ~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          111 GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV---KPNGLAFLPSGNLL  186 (296)
T ss_dssp             TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS---SEEEEEECTTSCEE
T ss_pred             CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC---CCccEEECCCCCEE
Confidence            111100001222236887664221 00          00012489999987 55555422111   1223333 367766


Q ss_pred             EEEecCCCccCCCCCeEEEEEECCCCC-e-eEEEEeec-CCcccceEEeeCCcEEEEEcCeEEEEeCCCCcEEEEeeeC
Q 045675          267 LAVYPGLGFRSRLSNRFELWVMNEGKG-W-TRTFNTAF-ERIAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPIDS  342 (382)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~iW~l~~~~~-W-~~~~~i~~-~~~~~~~~~~~~g~l~l~~~~~~~~yd~~t~~~~~v~~~~  342 (382)
                       +...       ....+.+|.++.. + . .....+.. .....-+++..+|.|++...+.+..||++.+..+.+..+.
T Consensus       187 -v~~~-------~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~g~~~~~~~~~~  256 (296)
T 3e5z_A          187 -VSDT-------GDNATHRYCLNAR-GETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLTPDGDELGRVLTPQ  256 (296)
T ss_dssp             -EEET-------TTTEEEEEEECSS-SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEECTTSCEEEEEECSS
T ss_pred             -EEeC-------CCCeEEEEEECCC-CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEECCCCCEEEEEECCC
Confidence             4443       2678888888743 4 5 33333311 1113346666788898888669999999977777776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=91.62  E-value=5.5  Score=33.56  Aligned_cols=185  Identities=11%  Similarity=0.008  Sum_probs=97.6

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC-CCeeeecCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST-GKWKEVAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t-~~W~~~~~~~  198 (382)
                      ...++++|+.+++...+.....          ....+.+.|... +-++. .      ...+.+++..+ +.........
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~----------~v~~~~~spdg~-~l~~~-~------~~~i~~~d~~~~~~~~~~~~~~   82 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPE----------LFEAPNWSPDGK-YLLLN-S------EGLLYRLSLAGDPSPEKVDTGF   82 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESS----------CCEEEEECTTSS-EEEEE-E------TTEEEEEESSSCCSCEECCCTT
T ss_pred             ceeEEEEeCCCCceeeeccCCc----------ceEeeEECCCCC-EEEEE-c------CCeEEEEeCCCCCCceEecccc
Confidence            6689999999998776544322          123566666543 33332 1      23799999988 7665544322


Q ss_pred             CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccC
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRS  277 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~  277 (382)
                      ..... . .....-+|...........  ....|..+|..+.....+.....    ...+... +|+..++...      
T Consensus        83 ~~~~~-~-~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~------  148 (297)
T 2ojh_A           83 ATICN-N-DHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP----SYWHGWSPDGKSFTYCGI------  148 (297)
T ss_dssp             CCCBC-S-CCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS----EEEEEECTTSSEEEEEEE------
T ss_pred             ccccc-c-ceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC----ccceEECCCCCEEEEEEC------
Confidence            11111 0 1222335654444432110  23588889988777655533221    2223322 6664443333      


Q ss_pred             CCCCeEEEEEECCCCCeeEEEEe-ecCCcccceEEeeCCc-EEEEEc-C---eEEEEeCCCCcEEEEe
Q 045675          278 RLSNRFELWVMNEGKGWTRTFNT-AFERIAWPVGSFRDSK-IIMKSV-D---QFFLFNPKTKRNFILP  339 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~W~~~~~i-~~~~~~~~~~~~~~g~-l~l~~~-~---~~~~yd~~t~~~~~v~  339 (382)
                       ....+.||.++...+ . ...+ ........+.+..+|. |++... +   .++.+++.++..+.+.
T Consensus       149 -~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~  213 (297)
T 2ojh_A          149 -RDQVFDIYSMDIDSG-V-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT  213 (297)
T ss_dssp             -ETTEEEEEEEETTTC-C-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC
T ss_pred             -CCCceEEEEEECCCC-c-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe
Confidence             156789999865422 1 1112 1112233445556776 555543 2   7888888777776653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.60  E-value=7.3  Score=34.93  Aligned_cols=187  Identities=12%  Similarity=0.045  Sum_probs=96.6

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      .+.|++....    .+...++.+.+...+-....          ...++.+|+..+...++-+      ....+..++..
T Consensus        44 ~~~ll~~~~~----~I~~i~~~g~~~~~~~~~~~----------~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~  103 (349)
T 3v64_C           44 EPVLLFANRI----DIRQVLPHRSEYTLLLNNLE----------NAIALDFHHRRELVFWSDV------TLDRILRANLN  103 (349)
T ss_dssp             CCEEEEECBS----CEEEECTTSCCEEEEECSCS----------CEEEEEEETTTTEEEEEET------TTTEEEEEETT
T ss_pred             CceeEeeccc----ceEEEeCCCCeeEEeecCCC----------ceEEEEEeccccEEEEEec------cCCceEEEecC
Confidence            4555554432    46666766655444322111          2457888876654433321      23467777777


Q ss_pred             CCCeeeecCCCCeeEEeCCcceEE---ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--C
Q 045675          188 TGKWKEVAAGTGSCVIYGGQDAVA---VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY--D  262 (382)
Q Consensus       188 t~~W~~~~~~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~  262 (382)
                      +..-+.+......    . ..++.   .+|.+||.....      ..|.++|+....-..+.. ... .....+++.  +
T Consensus       104 g~~~~~~~~~~~~----~-p~glavd~~~g~ly~~d~~~------~~I~~~~~dG~~~~~l~~-~~l-~~P~~iavdp~~  170 (349)
T 3v64_C          104 GSNVEEVVSTGLE----S-PGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLW-QSL-EKPRAIALHPME  170 (349)
T ss_dssp             SCSCEEEECSSCS----C-CCEEEEETTTTEEEEEETTT------TEEEEEETTSCSCEEEEC-TTC-SCEEEEEEETTT
T ss_pred             CCCceEEEeCCCC----C-ccEEEEecCCCeEEEEcCCC------CeEEEEcCCCCceEEEEe-CCC-CCcceEEEecCc
Confidence            6654443221000    0 12333   368999987654      589999998765443321 111 123445554  6


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEE--e-eCCcEEEEEcC--eEEEEeCCCCcEEE
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGS--F-RDSKIIMKSVD--QFFLFNPKTKRNFI  337 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~--~-~~g~l~l~~~~--~~~~yd~~t~~~~~  337 (382)
                      |.|++....       ....+....++.. . .+  .+-...+..|-++  . .++.||+....  ++..+|+.....+.
T Consensus       171 g~ly~td~~-------~~~~I~r~~~dG~-~-~~--~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~  239 (349)
T 3v64_C          171 GTIYWTDWG-------NTPRIEASSMDGS-G-RR--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA  239 (349)
T ss_dssp             TEEEEEECS-------SSCEEEEEETTSC-S-CE--ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CeEEEeccC-------CCCEEEEEeCCCC-C-cE--EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE
Confidence            788877654       1244444444432 1 11  1111234445444  3 24557777654  88899987655444


Q ss_pred             E
Q 045675          338 L  338 (382)
Q Consensus       338 v  338 (382)
                      +
T Consensus       240 ~  240 (349)
T 3v64_C          240 V  240 (349)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.39  E-value=2.5  Score=39.09  Aligned_cols=185  Identities=10%  Similarity=0.108  Sum_probs=88.3

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.|||..+++...+-.... +..      ...++.|.|..+.+-+.+-      .+..+.+++..++.-+.......
T Consensus       141 dg~i~lWd~~~~~~~~~~~~~g-H~~------~V~~l~f~p~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~  207 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKGIG-AGG------SITGLKFNPLNTNQFYASS------MEGTTRLQDFKGNILRVFASSDT  207 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECCCS-SSC------CCCEEEECSSCTTEEEEEC------SSSCEEEEETTSCEEEEEECCSS
T ss_pred             CCEEEEEECCCCCceeEEEccC-CCC------CEEEEEEeCCCCCEEEEEe------CCCEEEEeeccCCceeEEeccCC
Confidence            4589999998876443222111 111      1335677776555433221      33478888887765544333211


Q ss_pred             -eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccC
Q 045675          200 -SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRS  277 (382)
Q Consensus       200 -~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~  277 (382)
                       ....  ..-...-+|.+...++.+      ..|..+|+.++....+....   .....+... +|.-.++...      
T Consensus       208 ~~~~~--~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~h~---~~v~~v~~~p~~~~~~~s~s------  270 (435)
T 4e54_B          208 INIWF--CSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRMHK---KKVTHVALNPCCDWFLATAS------  270 (435)
T ss_dssp             CSCCC--CCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBCCS---SCEEEEEECTTCSSEEEEEE------
T ss_pred             CCccE--EEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEeccc---ceEEeeeecCCCceEEEEec------
Confidence             1111  011222356555544433      46888898765443322111   122223222 4443333333      


Q ss_pred             CCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEE-EcC-eEEEEeCCCCcE
Q 045675          278 RLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMK-SVD-QFFLFNPKTKRN  335 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~-~~~-~~~~yd~~t~~~  335 (382)
                       ....+.||-+..... =.......-...+.-+.+..+|..++. ..+ .+.+||.++...
T Consensus       271 -~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          271 -VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             -TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             -CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence             256789998875422 000000000111222334456664443 344 888999987653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.33  E-value=7.6  Score=34.61  Aligned_cols=195  Identities=8%  Similarity=-0.053  Sum_probs=93.5

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCC-ccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSL-TESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST  186 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss  186 (382)
                      ++.|+....   ...+.|||..+++......... .+.    .  ....+.|.|.. .+-+.+ .     .+..+.+++.
T Consensus        93 d~~l~~~s~---dg~v~lWd~~~~~~~~~~~~~~~~H~----~--~V~~v~~spdg-~~l~sg-s-----~d~~i~iwd~  156 (344)
T 4gqb_B           93 ERGILVASD---SGAVELWELDENETLIVSKFCKYEHD----D--IVSTVSVLSSG-TQAVSG-S-----KDICIKVWDL  156 (344)
T ss_dssp             TTEEEEEET---TSEEEEEEECTTSSCEEEEEEEECCS----S--CEEEEEECTTS-SEEEEE-E-----TTSCEEEEET
T ss_pred             CCeEEEEEC---CCEEEEEeccCCCceeEeeccccCCC----C--CEEEEEECCCC-CEEEEE-e-----CCCeEEEEEC
Confidence            555554444   4589999999887544322111 111    1  23356666643 332222 1     3347888888


Q ss_pred             CCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEEe--CC
Q 045675          187 STGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALSY--DQ  263 (382)
Q Consensus       187 ~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~~--~g  263 (382)
                      .++.=...-.... ... . .-...-+|.-+.+.+..     ...|..+|+.+.+... +..+... .....+...  ++
T Consensus       157 ~~~~~~~~~~~h~-~~V-~-~~~~~~~~~~~l~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~  227 (344)
T 4gqb_B          157 AQQVVLSSYRAHA-AQV-T-CVAASPHKDSVFLSCSE-----DNRILLWDTRCPKPASQIGCSAPG-YLPTSLAWHPQQS  227 (344)
T ss_dssp             TTTEEEEEECCCS-SCE-E-EEEECSSCTTEEEEEET-----TSCEEEEETTSSSCEEECC----C-CCEEEEEECSSCT
T ss_pred             CCCcEEEEEcCcC-Cce-E-EEEecCCCCCceeeecc-----ccccccccccccceeeeeecceee-ccceeeeecCCCC
Confidence            7763211111000 001 0 01111234322333222     2468889998765433 3322221 012223322  45


Q ss_pred             eEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCCc-EEE-EEcC-eEEEEeCCCCcEEEE
Q 045675          264 SLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDSK-IIM-KSVD-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       264 ~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g~-l~l-~~~~-~~~~yd~~t~~~~~v  338 (382)
                      .+.+.+..        ...+.||-+...   ..+..+.. ..-+.-+.+..+|. ++. ...+ .+.+||.++++..++
T Consensus       228 ~~l~sg~~--------dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          228 EVFVFGDE--------NGTVSLVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             TEEEEEET--------TSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             cceEEecc--------CCcEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence            55555544        678999988765   22223321 12234455556664 444 3444 899999999876554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.31  E-value=7.4  Score=35.03  Aligned_cols=185  Identities=11%  Similarity=0.061  Sum_probs=92.1

Q ss_pred             ceeEEEEcccccc------eeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeee
Q 045675          120 GMAFVLWNPATNE------FKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKE  193 (382)
Q Consensus       120 ~~~~~V~NP~T~~------~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~  193 (382)
                      ...+.+||..+++      ..........+..      ....+.+.+..+.+.+.+-      .+..+.+|+..++.-..
T Consensus       135 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD------EVISLAWNQSLAHVFASAG------SSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC------CCCEEEECSSCTTEEEEES------SSSCEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCccccccccccccccccCCCC------CeeEEEeCCCCCcEEEEEc------CCCCEEEEECCCCCcce
Confidence            4589999998876      2221111111111      1235666665444433321      23478999988764332


Q ss_pred             ecCCCC-----eeEEeCCcceEEE--Cc-eEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--CC
Q 045675          194 VAAGTG-----SCVIYGGQDAVAV--KG-VLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY--DQ  263 (382)
Q Consensus       194 ~~~~~~-----~~~~~~~~~~v~~--~G-~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~g  263 (382)
                      .-....     ....    ..+.+  +| .+...+..+.   ....|..+|+.+..-....+..........+...  +|
T Consensus       203 ~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~d~---~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  275 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQL----SVVEWHPKNSTRVATATGSD---NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE  275 (416)
T ss_dssp             EECCCCCSSCCCCCE----EEEEECSSCTTEEEEEECCS---SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS
T ss_pred             EEeccccccccCCce----EEEEECCCCCCEEEEEECCC---CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC
Confidence            211110     1111    22222  23 3444443331   0116888898874211111210111123334332  56


Q ss_pred             eEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCC-cEEEEEc-C-eEEEEeCCCCc
Q 045675          264 SLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDS-KIIMKSV-D-QFFLFNPKTKR  334 (382)
Q Consensus       264 ~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g-~l~l~~~-~-~~~~yd~~t~~  334 (382)
                      .+.+....        ...+.+|.++..   ..+..+.. .....-+.+..++ .+++... + .+.+||+++.+
T Consensus       276 ~~l~s~~~--------dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          276 HLLLSSGR--------DNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             SCEEEEES--------SSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CeEEEEeC--------CCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            66666654        678999988765   34444432 2224456666676 5655554 3 89999998775

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.26  E-value=7.8  Score=34.61  Aligned_cols=188  Identities=9%  Similarity=-0.064  Sum_probs=90.2

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +.+|-.++....  ...+.|||..+++....-.....         ....+.+.+..+.+.+.+.      .+..+.+|+
T Consensus       148 spdg~~l~sgs~--dg~v~iwd~~~~~~~~~~~~h~~---------~v~~v~~s~~~~~~~~s~~------~dg~v~~wd  210 (357)
T 4g56_B          148 FSDGTQAVSGGK--DFSVKVWDLSQKAVLKSYNAHSS---------EVNCVAACPGKDTIFLSCG------EDGRILLWD  210 (357)
T ss_dssp             CSSSSEEEEEET--TSCEEEEETTTTEEEEEECCCSS---------CEEEEEECTTCSSCEEEEE------TTSCEEECC
T ss_pred             CCCCCEEEEEeC--CCeEEEEECCCCcEEEEEcCCCC---------CEEEEEEccCCCceeeeec------cCCceEEEE
Confidence            335554444332  45789999988875432111111         1234566665544433332      234688888


Q ss_pred             CCCCCeeeecCC-CCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCceee-EeCCCCCCCCCeeeEEE
Q 045675          186 TSTGKWKEVAAG-TGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELPTDCYVKALS  260 (382)
Q Consensus       186 s~t~~W~~~~~~-~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~  260 (382)
                      .+++.-...-.. ......    .++.+   ++.+...+..+      ..|..+|+.+.+-. .+.....   ....+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~v----~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~~~~~~~~~---~v~~l~~  277 (357)
T 4g56_B          211 TRKPKPATRIDFCASDTIP----TSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSAQTSAVHSQ---NITGLAY  277 (357)
T ss_dssp             TTSSSCBCBCCCTTCCSCE----EEEEECTTSTTEEEEEESS------SCEEEEESSCGGGCEEECCCSS---CEEEEEE
T ss_pred             CCCCceeeeeeeccccccc----cchhhhhcccceEEEeecc------cceeEEECCCCcEeEEEeccce---eEEEEEE
Confidence            877643222111 111111    22222   23443333332      46888898775432 2232221   2233333


Q ss_pred             e-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee-CCcEEEEE-cC-eEEEEeCCCC
Q 045675          261 Y-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR-DSKIIMKS-VD-QFFLFNPKTK  333 (382)
Q Consensus       261 ~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~-~g~l~l~~-~~-~~~~yd~~t~  333 (382)
                      . +|.-+++...       ....+.||-++..   ..+..+.-...+.-+++.. ++.+++.. .+ .+.+||+.+.
T Consensus       278 sp~~~~~lasgs-------~D~~i~iwd~~~~---~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          278 SYHSSPFLASIS-------EDCTVAVLDADFS---EVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             CSSSSCCEEEEE-------TTSCEEEECTTSC---EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             cCCCCCEEEEEe-------CCCEEEEEECCCC---cEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            2 4533333333       2578999976554   3333333223344455553 56655544 44 8999998654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.74  E-value=8.2  Score=33.96  Aligned_cols=214  Identities=12%  Similarity=0.017  Sum_probs=106.5

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccc----ccee-ccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCC
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPAT----NEFK-GLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDA  179 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T----~~~~-~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~  179 (382)
                      +..+|.|...+..  ...++.+++.+    .... .++..-.          ...++.+|+..+...+.-      ....
T Consensus        38 d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~----------~p~glavd~~~~~ly~~d------~~~~   99 (316)
T 1ijq_A           38 EVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQ----------APDGLAVDWIHSNIYWTD------SVLG   99 (316)
T ss_dssp             ETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCS----------CCCEEEEETTTTEEEEEE------TTTT
T ss_pred             EeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCC----------CcCEEEEeecCCeEEEEE------CCCC
Confidence            3446777777654  45788888876    2222 2321111          122677776554433221      1234


Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcceEE-ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeE
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVA-VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKA  258 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l  258 (382)
                      .+++++..+..=+.+.......+.   .-++. .+|.+||.....     ...|.++|+....-..+... .. ...-.|
T Consensus       100 ~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG~~~~~~~~~-~~-~~P~gl  169 (316)
T 1ijq_A          100 TVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTE-NI-QWPNGI  169 (316)
T ss_dssp             EEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS-----SCEEEEEETTSCCEEEEECS-SC-SCEEEE
T ss_pred             EEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccCC-----CCeEEEEcCCCCCeEEEEEC-CC-CCceEE
Confidence            777888765432222111111111   11222 378999986532     24899999976544443111 11 123445


Q ss_pred             EEe--CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEe-eCCcEEEEEcC--eEEEEeCCC
Q 045675          259 LSY--DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSF-RDSKIIMKSVD--QFFLFNPKT  332 (382)
Q Consensus       259 ~~~--~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~-~~g~l~l~~~~--~~~~yd~~t  332 (382)
                      +..  +++|+++...        ...+.+..++..  -.++. +.. ..+..|.++. .++.||+....  ++..+|+.+
T Consensus       170 a~d~~~~~lY~~D~~--------~~~I~~~d~dg~--~~~~~-~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          170 TLDLLSGRLYWVDSK--------LHSISSIDVNGG--NRKTI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEETTTTEEEEEETT--------TTEEEEEETTSC--SCEEE-EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEeccCCEEEEEECC--------CCeEEEEecCCC--ceEEE-eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence            554  6889988765        455655555432  12211 121 2344565554 34557766654  899999976


Q ss_pred             Cc-EEEEeeeCCCCCeEEEEEEeeceee
Q 045675          333 KR-NFILPIDSGMGYSYKVFTYVDSIVA  359 (382)
Q Consensus       333 ~~-~~~v~~~~~~~~~~~~~~y~~SLv~  359 (382)
                      ++ .+.+...  ...-..+.+|.++.-|
T Consensus       239 g~~~~~i~~~--~~~p~~i~v~~~~~qp  264 (316)
T 1ijq_A          239 GSDVNLLAEN--LLSPEDMVLFHNLTQP  264 (316)
T ss_dssp             CCCCEEEECS--CSCCCCEEEESGGGSC
T ss_pred             CcceEEEecC--CCCceEEEEeccccCC
Confidence            65 4444321  1111345566665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=90.74  E-value=7.4  Score=33.44  Aligned_cols=136  Identities=10%  Similarity=-0.015  Sum_probs=81.2

Q ss_pred             CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCce-eeEeCCCCCCCCCeee
Q 045675          179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL-FWRTAMPELPTDCYVK  257 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~-~~~i~~P~~~~~~~~~  257 (382)
                      ..+.+++..+++=...-..+. ..+ + ......++.+|.+....      ..+.+||..+.+ -..++.+..    ...
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~-~~F-g-eGit~~g~~ly~ltw~~------~~v~v~D~~t~~~~~ti~~~~e----G~g  131 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGK-RYF-G-EGISDWKDKIVGLTWKN------GLGFVWNIRNLRQVRSFNYDGE----GWG  131 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCT-TCC-E-EEEEEETTEEEEEESSS------SEEEEEETTTCCEEEEEECSSC----CCC
T ss_pred             ceEEEEECCCCcEEEEEecCC-ccc-e-eEEEEeCCEEEEEEeeC------CEEEEEECccCcEEEEEECCCC----ceE
Confidence            478899999886433222222 112 1 13445678999987765      589999998744 456666542    245


Q ss_pred             EEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC----c--ccceEEeeCCcEEEEEcC--eEEEEe
Q 045675          258 ALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER----I--AWPVGSFRDSKIIMKSVD--QFFLFN  329 (382)
Q Consensus       258 l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~----~--~~~~~~~~~g~l~l~~~~--~~~~yd  329 (382)
                      ++..+++|++...         +.  .||.++-. .-..+.+|....    +  ..-+... +|+|+.....  .+...|
T Consensus       132 lt~dg~~L~~SdG---------s~--~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          132 LTHNDQYLIMSDG---------TP--VLRFLDPE-SLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EEECSSCEEECCS---------SS--EEEEECTT-TCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EecCCCEEEEECC---------CC--eEEEEcCC-CCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            5555666776432         22  57777754 224455554421    1  1113333 7888866643  999999


Q ss_pred             CCCCcEEE-Eee
Q 045675          330 PKTKRNFI-LPI  340 (382)
Q Consensus       330 ~~t~~~~~-v~~  340 (382)
                      ++|++... +.+
T Consensus       199 p~tG~V~~~Id~  210 (262)
T 3nol_A          199 PETGKVTGIIDL  210 (262)
T ss_dssp             TTTCBEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            99998654 454

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=90.39  E-value=5.1  Score=35.68  Aligned_cols=182  Identities=12%  Similarity=0.056  Sum_probs=83.8

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC-eeeecCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK-WKEVAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~-W~~~~~~~  198 (382)
                      ...+.|||..++++..+-......    .   ....+.+.+.. .+-+.+-      .+..+.+|+..++. |.......
T Consensus        32 d~~i~iw~~~~~~~~~~~~~~~h~----~---~v~~~~~s~~~-~~l~s~s------~d~~v~vwd~~~~~~~~~~~~~~   97 (377)
T 3dwl_C           32 TNQVELYEQDGNGWKHARTFSDHD----K---IVTCVDWAPKS-NRIVTCS------QDRNAYVYEKRPDGTWKQTLVLL   97 (377)
T ss_dssp             SSCBCEEEEETTEEEECCCBCCCS----S---CEEEEEECTTT-CCEEEEE------TTSSEEEC------CCCCEEECC
T ss_pred             CCEEEEEEccCCceEEEEEEecCC----c---eEEEEEEeCCC-CEEEEEe------CCCeEEEEEcCCCCceeeeeEec
Confidence            457889999887544433332211    1   23456677654 3332221      23478888888776 65443331


Q ss_pred             C-eeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCce----eeEeCCCCCCCCCeeeEEEe-CCeEEEEEe
Q 045675          199 G-SCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLEL----FWRTAMPELPTDCYVKALSY-DQSLALAVY  270 (382)
Q Consensus       199 ~-~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~----~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~  270 (382)
                      . ....    ..+.+  +|.....+..+      ..|..+|+.+.+    ...+..|...  ....+... +|++.+...
T Consensus        98 ~~~~~v----~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           98 RLNRAA----TFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRS--TILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             CCSSCE----EEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCS--CEEEEEECTTSSEEEEEE
T ss_pred             ccCCce----EEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCC--CeEEEEEcCCCCEEEEEe
Confidence            1 1111    11211  45544444333      367788887764    3333332221  23333332 566555555


Q ss_pred             cCCCccCCCCCeEEEEEECCCC-------C-eeE-------EEEeecCCcccceEEeeCCcE-EEEEcC-eEEEEeCCCC
Q 045675          271 PGLGFRSRLSNRFELWVMNEGK-------G-WTR-------TFNTAFERIAWPVGSFRDSKI-IMKSVD-QFFLFNPKTK  333 (382)
Q Consensus       271 ~~~~~~~~~~~~~~iW~l~~~~-------~-W~~-------~~~i~~~~~~~~~~~~~~g~l-~l~~~~-~~~~yd~~t~  333 (382)
                      .        ...+.+|.+...+       . |..       +..+.......-+.+..+|.. +....+ .+.+||++++
T Consensus       166 ~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          166 A--------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             S--------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             C--------CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4        5789999985321       0 321       111111111344555567764 444445 8889999888


Q ss_pred             cE
Q 045675          334 RN  335 (382)
Q Consensus       334 ~~  335 (382)
                      +.
T Consensus       238 ~~  239 (377)
T 3dwl_C          238 EQ  239 (377)
T ss_dssp             TS
T ss_pred             CC
Confidence            64

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=90.36  E-value=8.7  Score=33.61  Aligned_cols=202  Identities=11%  Similarity=0.043  Sum_probs=103.7

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      ..+..+++....  ...+.++|+.|++... ++......... .......++.+++..+. -++.-..    ....+.++
T Consensus        98 ~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~-l~~~~~~----~~~~i~~~  169 (353)
T 3vgz_A           98 NTTQTLWFGNTV--NSAVTAIDAKTGEVKGRLVLDDRKRTEE-VRPLQPRELVADDATNT-VYISGIG----KESVIWVV  169 (353)
T ss_dssp             TTTTEEEEEETT--TTEEEEEETTTCCEEEEEESCCCCCCSS-CCCCEEEEEEEETTTTE-EEEEEES----SSCEEEEE
T ss_pred             CCCCEEEEEecC--CCEEEEEeCCCCeeEEEEecCCCccccc-cCCCCCceEEECCCCCE-EEEEecC----CCceEEEE
Confidence            334445555443  4589999999988533 33321110000 00002346778886553 2222211    23478889


Q ss_pred             ECCCCCeee-ecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceee-EeCCCCCC-CCCeeeEEEe
Q 045675          185 STSTGKWKE-VAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFW-RTAMPELP-TDCYVKALSY  261 (382)
Q Consensus       185 ss~t~~W~~-~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~-~i~~P~~~-~~~~~~l~~~  261 (382)
                      +..++.=.. .... .....   .-.+.-+|...++...+      ..|..+|+.+.+.. .+..+... ......+...
T Consensus       170 d~~~~~~~~~~~~~-~~~~~---~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  239 (353)
T 3vgz_A          170 DGGNIKLKTAIQNT-GKMST---GLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEHFFINISLD  239 (353)
T ss_dssp             ETTTTEEEEEECCC-CTTCC---CCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred             cCCCCceEEEecCC-CCccc---eEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence            988764222 1111 00000   12333366544444332      37889999887664 33443221 1122233333


Q ss_pred             -CCe-EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeCCCCcEE
Q 045675          262 -DQS-LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNPKTKRNF  336 (382)
Q Consensus       262 -~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~~t~~~~  336 (382)
                       +|+ |++....        ...+.+|.++..   ..+..++... ...+.+..+|+ +++....  .+.+||.++++..
T Consensus       240 ~dg~~l~~~~~~--------~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~  307 (353)
T 3vgz_A          240 TARQRAFITDSK--------AAEVLVVDTRNG---NILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV  307 (353)
T ss_dssp             TTTTEEEEEESS--------SSEEEEEETTTC---CEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEeCC--------CCEEEEEECCCC---cEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence             555 5444332        678888877654   3334444333 23356666777 6666643  8999999988755


Q ss_pred             E
Q 045675          337 I  337 (382)
Q Consensus       337 ~  337 (382)
                      .
T Consensus       308 ~  308 (353)
T 3vgz_A          308 K  308 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=90.09  E-value=9.3  Score=33.56  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=86.6

Q ss_pred             EEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC-CCCeeeecCC---CCeeEEeCCcceEEECce-EEEEeecccccc
Q 045675          153 SLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS-TGKWKEVAAG---TGSCVIYGGQDAVAVKGV-LHWIANGIGVLV  227 (382)
Q Consensus       153 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~-t~~W~~~~~~---~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~  227 (382)
                      ..++.++|..+   ++.. .   .....+.+|+.. ++........   ....+.   .-++.-+|. +|......    
T Consensus       143 ~~~~~~spdg~---l~v~-~---~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~---~~~~spdg~~l~v~~~~~----  208 (347)
T 3hfq_A          143 IHYTDLTPDNR---LAVI-D---LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR---HLVFSPDGQYAFLAGELS----  208 (347)
T ss_dssp             EEEEEECTTSC---EEEE-E---TTTTEEEEEEECTTSCEEEEEEEECCTTCCEE---EEEECTTSSEEEEEETTT----
T ss_pred             ceEEEECCCCc---EEEE-e---CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc---eEEECCCCCEEEEEeCCC----
Confidence            34577788765   2221 1   123478889887 5555433221   111111   122333677 55544333    


Q ss_pred             cccEEEEEECC--CceeeEe----CCCCCCCC--CeeeEEE-eCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeE
Q 045675          228 NEKFVVSYDMN--LELFWRT----AMPELPTD--CYVKALS-YDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTR  296 (382)
Q Consensus       228 ~~~~i~~fD~~--~~~~~~i----~~P~~~~~--~~~~l~~-~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~  296 (382)
                        ..|..+|+.  +.++..+    ..|.....  ....+.. -+|+ |++....        ...+.+|.++.. + +..
T Consensus       209 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~--------~~~v~v~~~~~~-g~~~~  277 (347)
T 3hfq_A          209 --SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG--------YNTLAVFAVTAD-GHLTL  277 (347)
T ss_dssp             --TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET--------TTEEEEEEECGG-GCEEE
T ss_pred             --CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC--------CCEEEEEEECCC-CcEEE
Confidence              245555544  5665443    23332111  1222333 3676 5554443        678999999864 4 666


Q ss_pred             EEEeecC-CcccceEEeeCCc-EEEEEcC--eEEEE--eCCCCcEEEEe
Q 045675          297 TFNTAFE-RIAWPVGSFRDSK-IIMKSVD--QFFLF--NPKTKRNFILP  339 (382)
Q Consensus       297 ~~~i~~~-~~~~~~~~~~~g~-l~l~~~~--~~~~y--d~~t~~~~~v~  339 (382)
                      +..++.. .....+.+..+|. |++...+  .+.+|  |.++++++.+.
T Consensus       278 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          278 IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence            6666542 2244566777887 5565543  55555  88899988775

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=89.78  E-value=12  Score=34.30  Aligned_cols=185  Identities=11%  Similarity=0.016  Sum_probs=95.5

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCCe
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTGS  200 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~  200 (382)
                      ..+++||..+++...|.....          ....+.+.|... + ++....  ......+.+++..++..+.+......
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~----------~v~~~~~Spdg~-~-la~~s~--~~~~~~i~~~d~~tg~~~~l~~~~~~  224 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQ----------PLMSPAWSPDGS-K-LAYVTF--ESGRSALVIQTLANGAVRQVASFPRH  224 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESS----------CEEEEEECTTSS-E-EEEEEC--TTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             ceEEEEcCCCCCCEEEeCCCC----------cceeeEEcCCCC-E-EEEEEe--cCCCcEEEEEECCCCcEEEeecCCCc
Confidence            689999987766555433221          133566677543 2 222221  12235899999998876654433211


Q ss_pred             eEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCC
Q 045675          201 CVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSR  278 (382)
Q Consensus       201 ~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~  278 (382)
                       ..   .....-+|. +.+....+    ....|..+|+.+.+...+.....   ....+.- -+|+..++...  .    
T Consensus       225 -~~---~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~--~----  287 (415)
T 2hqs_A          225 -NG---APAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSD--Q----  287 (415)
T ss_dssp             -EE---EEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEEC--T----
T ss_pred             -cc---CEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEEC--C----
Confidence             11   122223565 55454433    13479999998877655432111   2223332 36764444443  1    


Q ss_pred             CCCeEEEEEECCCCCeeEEEEeecC-CcccceEEeeCCc-EEEEEcC----eEEEEeCCCCcEEEEe
Q 045675          279 LSNRFELWVMNEGKGWTRTFNTAFE-RIAWPVGSFRDSK-IIMKSVD----QFFLFNPKTKRNFILP  339 (382)
Q Consensus       279 ~~~~~~iW~l~~~~~W~~~~~i~~~-~~~~~~~~~~~g~-l~l~~~~----~~~~yd~~t~~~~~v~  339 (382)
                       ....+||.++-..+ . ...+... .....+.+..+|+ |++...+    .++.+|+++++.+.+.
T Consensus       288 -~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          288 -AGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             -TSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC
T ss_pred             -CCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec
Confidence             23345555543312 1 1122111 1122345556777 5555432    7999999999887653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=89.61  E-value=9.4  Score=32.90  Aligned_cols=135  Identities=7%  Similarity=-0.052  Sum_probs=80.1

Q ss_pred             EEEEEECCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCCCCCCeeeE
Q 045675          180 IAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPELPTDCYVKA  258 (382)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~~~~~~~~l  258 (382)
                      .+.+++..+++=...- .++ ..+ + ......++.+|-+...+      ..+.+||..+.+- ..++.+..    ...|
T Consensus        76 ~v~~iD~~Tgkv~~~~-l~~-~~F-g-eGit~~g~~Ly~ltw~~------~~v~V~D~~Tl~~~~ti~~~~e----GwGL  141 (268)
T 3nok_A           76 TLRQLSLESAQPVWME-RLG-NIF-A-EGLASDGERLYQLTWTE------GLLFTWSGMPPQRERTTRYSGE----GWGL  141 (268)
T ss_dssp             EEEECCSSCSSCSEEE-ECT-TCC-E-EEEEECSSCEEEEESSS------CEEEEEETTTTEEEEEEECSSC----CCCE
T ss_pred             EEEEEECCCCcEEeEE-CCC-Ccc-e-eEEEEeCCEEEEEEccC------CEEEEEECCcCcEEEEEeCCCc----eeEE
Confidence            4888888887532222 211 111 1 13445567888887665      5899999987544 55666543    2456


Q ss_pred             EEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc------ccceEEeeCCcEEEEEcC--eEEEEeC
Q 045675          259 LSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI------AWPVGSFRDSKIIMKSVD--QFFLFNP  330 (382)
Q Consensus       259 ~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~------~~~~~~~~~g~l~l~~~~--~~~~yd~  330 (382)
                      +..+++|++....         .  .|+.++-. .=..+.+|....-      ..-+.. .+|+|+.....  .+...|+
T Consensus       142 t~Dg~~L~vSdGs---------~--~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~-~dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          142 CYWNGKLVRSDGG---------T--MLTFHEPD-GFALVGAVQVKLRGQPVELINELEC-ANGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             EEETTEEEEECSS---------S--EEEEECTT-TCCEEEEEECEETTEECCCEEEEEE-ETTEEEEEETTCSEEEEECT
T ss_pred             ecCCCEEEEECCC---------C--EEEEEcCC-CCeEEEEEEeCCCCcccccccccEE-eCCEEEEEECCCCeEEEEeC
Confidence            6667778776532         2  56777754 2244555543221      112232 37788866643  9999999


Q ss_pred             CCCcEE-EEeee
Q 045675          331 KTKRNF-ILPID  341 (382)
Q Consensus       331 ~t~~~~-~v~~~  341 (382)
                      +|++.. .+.+.
T Consensus       209 ~TG~V~~~Idl~  220 (268)
T 3nok_A          209 ATGTVVGVIDAS  220 (268)
T ss_dssp             TTCBEEEEEECH
T ss_pred             CCCcEEEEEECC
Confidence            999865 45543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.45  E-value=11  Score=33.55  Aligned_cols=194  Identities=10%  Similarity=-0.028  Sum_probs=86.1

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      +|.++....   ...+.|||..+++............   ..  ....+.+.|.. .+-+.+.      .+..+.+++..
T Consensus       105 d~~~l~~s~---dg~v~lWd~~~~~~~~~~~~~~~~h---~~--~V~~v~~spdg-~~l~sgs------~dg~v~iwd~~  169 (357)
T 4g56_B          105 EKGILVASD---SGAVELWEILEKESLLVNKFAKYEH---DD--IVKTLSVFSDG-TQAVSGG------KDFSVKVWDLS  169 (357)
T ss_dssp             TTEEEEEET---TSCEEEC--------CCCCEEECCC---SS--CEEEEEECSSS-SEEEEEE------TTSCEEEEETT
T ss_pred             CCCEEEEEC---CCEEEEeeccccceeEEEeeccCCC---CC--CEEEEEECCCC-CEEEEEe------CCCeEEEEECC
Confidence            555554444   4579999999887554433221110   11  23356666643 3333221      23478888888


Q ss_pred             CCCeeeecCCCCeeEEeCCcceEE--ECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEEe--C
Q 045675          188 TGKWKEVAAGTGSCVIYGGQDAVA--VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALSY--D  262 (382)
Q Consensus       188 t~~W~~~~~~~~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~--~  262 (382)
                      ++.-...-.... ...    .++.  -+|.-+.+....     ...|..+|+.+.+.... ...... .....+.-.  +
T Consensus       170 ~~~~~~~~~~h~-~~v----~~v~~s~~~~~~~~s~~~-----dg~v~~wd~~~~~~~~~~~~~~~~-~~v~~v~~sp~~  238 (357)
T 4g56_B          170 QKAVLKSYNAHS-SEV----NCVAACPGKDTIFLSCGE-----DGRILLWDTRKPKPATRIDFCASD-TIPTSVTWHPEK  238 (357)
T ss_dssp             TTEEEEEECCCS-SCE----EEEEECTTCSSCEEEEET-----TSCEEECCTTSSSCBCBCCCTTCC-SCEEEEEECTTS
T ss_pred             CCcEEEEEcCCC-CCE----EEEEEccCCCceeeeecc-----CCceEEEECCCCceeeeeeecccc-ccccchhhhhcc
Confidence            764322111100 001    1222  233322222222     23688888877654322 222111 112223322  3


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCC-cEEE-EEcC-eEEEEeCCCCcEEEE
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDS-KIIM-KSVD-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g-~l~l-~~~~-~~~~yd~~t~~~~~v  338 (382)
                      +.+.+....        ...+.+|.+....   ....+.. ..-+.-+.+..++ .++. ...+ .+.+||+++++....
T Consensus       239 ~~~la~g~~--------d~~i~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          239 DDTFACGDE--------TGNVSLVNIKNPD---SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             TTEEEEEES--------SSCEEEEESSCGG---GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cceEEEeec--------ccceeEEECCCCc---EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            455544443        6789999887651   2222221 1113334555555 3444 3444 899999998876543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=89.45  E-value=5.2  Score=36.63  Aligned_cols=121  Identities=9%  Similarity=-0.005  Sum_probs=72.2

Q ss_pred             ECceEEEEeecccccccccEEEEEECCCceeeEeC-CC--------CCC-CCCeeeEEE--eCCeEEEEEecCCCccCCC
Q 045675          212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTA-MP--------ELP-TDCYVKALS--YDQSLALAVYPGLGFRSRL  279 (382)
Q Consensus       212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~-~P--------~~~-~~~~~~l~~--~~g~L~~~~~~~~~~~~~~  279 (382)
                      .+|.++|.+..+       .+.++|+.++.-..+. ..        ... .+....++.  -+++|++..... ..+.+.
T Consensus       236 ~dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~-~~~~hk  307 (386)
T 3sjl_D          236 KAGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR-DEWRHK  307 (386)
T ss_dssp             TTTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC-CTTCTT
T ss_pred             CCCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc-cccccC
Confidence            378999987755       7999999877543321 10        000 001112333  356788876531 112223


Q ss_pred             CCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEE-Ec--CeEEEEeCCCCcEEE-Eeee
Q 045675          280 SNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMK-SV--DQFFLFNPKTKRNFI-LPID  341 (382)
Q Consensus       280 ~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~-~~--~~~~~yd~~t~~~~~-v~~~  341 (382)
                      ...=+||+++-. .+..+.+|++..-...+.+..++. +++. ..  +.+.+||.++++..+ +...
T Consensus       308 ~~~~~V~viD~~-t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          308 TASRFVVVLDAK-TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             SCEEEEEEEETT-TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCCCEEEEEECC-CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            445789999875 467777787654344577777775 5444 43  289999999987543 4443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=89.19  E-value=13  Score=33.79  Aligned_cols=183  Identities=8%  Similarity=-0.040  Sum_probs=90.0

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC--CCCEEEEEECCCCCeeeecCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR--YDAIAEVYSTSTGKWKEVAAG  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~--~~~~~~vyss~t~~W~~~~~~  197 (382)
                      ...+.+||+.+++....-....          ...++.++|..+ +-++........  .+..+.+|+..++.-......
T Consensus       233 ~~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~  301 (433)
T 3bws_A          233 SEDISVIDRKTKLEIRKTDKIG----------LPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP  301 (433)
T ss_dssp             TTEEEEEETTTTEEEEECCCCS----------EEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCC----------CceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeeccC
Confidence            4578889988877654322221          233566676543 333333221111  234888999887643221110


Q ss_pred             CCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEEe-CCeEEEEEecCCC
Q 045675          198 TGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALSY-DQSLALAVYPGLG  274 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~  274 (382)
                      . ....   .....-+|. +|..+..+      ..|..+|+.+.+... ++...    ....+... +|+..++.... .
T Consensus       302 ~-~~~~---~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~-~  366 (433)
T 3bws_A          302 P-GNKR---HIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIPVFD----KPNTIALSPDGKYLYVSCRG-P  366 (433)
T ss_dssp             E-ECEE---EEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEECC-C
T ss_pred             C-CCcc---eEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEecCCC----CCCeEEEcCCCCEEEEEecC-C
Confidence            0 0000   112222464 55543333      489999998765433 33211    22334333 56544444330 1


Q ss_pred             cc--------CCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEc-C-eEEEEeCC
Q 045675          275 FR--------SRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSV-D-QFFLFNPK  331 (382)
Q Consensus       275 ~~--------~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~-~-~~~~yd~~  331 (382)
                      ..        ......+.+|.++..   ..+..++.......+.+..+|..+ .... + .+.+||++
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CccccccccccccceEEEEEECCCC---cEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            00        001237888877654   444445443334445666677744 4443 3 88888875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=89.08  E-value=9.7  Score=32.36  Aligned_cols=189  Identities=9%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      ..+|.|.+..... ...+.++|+..+....+......         ...++.+|+... ..|.   .   .....+.+|+
T Consensus        86 ~~~g~l~v~~~~~-~~~i~~~d~~g~~~~~~~~~~~~---------~~~~i~~~~~g~-l~v~---~---~~~~~i~~~~  148 (286)
T 1q7f_A           86 RNSGDIIVTERSP-THQIQIYNQYGQFVRKFGATILQ---------HPRGVTVDNKGR-IIVV---E---CKVMRVIIFD  148 (286)
T ss_dssp             TTTTEEEEEECGG-GCEEEEECTTSCEEEEECTTTCS---------CEEEEEECTTSC-EEEE---E---TTTTEEEEEC
T ss_pred             cCCCeEEEEcCCC-CCEEEEECCCCcEEEEecCccCC---------CceEEEEeCCCC-EEEE---E---CCCCEEEEEc
Confidence            3577776665310 34788899654444444332211         133677777542 2221   1   1234677887


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eC
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YD  262 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~  262 (382)
                      .....-+..........    ..++.+  +|.+|......      ..|..||...+....+..+... .....++. .+
T Consensus       149 ~~g~~~~~~~~~~~~~~----p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~-~~p~~i~~d~~  217 (286)
T 1q7f_A          149 QNGNVLHKFGCSKHLEF----PNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGIT-NYPIGVGINSN  217 (286)
T ss_dssp             TTSCEEEEEECTTTCSS----EEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTS-CSEEEEEECTT
T ss_pred             CCCCEEEEeCCCCccCC----cEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCcc-CCCcEEEECCC
Confidence            65443333321100000    123333  57876654332      4899999987766666443211 12334544 37


Q ss_pred             CeEEEEEecCCCccCCCCC-eEEEEEECCCCCeeEEEEeecCC-cccceEEeeCCcEEEEEcC-eEEEEeCCC
Q 045675          263 QSLALAVYPGLGFRSRLSN-RFELWVMNEGKGWTRTFNTAFER-IAWPVGSFRDSKIIMKSVD-QFFLFNPKT  332 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~-~~~iW~l~~~~~W~~~~~i~~~~-~~~~~~~~~~g~l~l~~~~-~~~~yd~~t  332 (382)
                      |.|++....        .. .+.+|..+.  .-.......... ....+++..+|.+++...+ .+.+|+...
T Consensus       218 G~l~v~~~~--------~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          218 GEILIADNH--------NNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             CCEEEEECS--------SSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCEEEEeCC--------CCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            888887765        33 778775322  122222222111 1223555667888877655 777887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=88.99  E-value=11  Score=32.89  Aligned_cols=180  Identities=7%  Similarity=-0.025  Sum_probs=90.3

Q ss_pred             ceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCee-eecCC
Q 045675          120 GMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWK-EVAAG  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~-~~~~~  197 (382)
                      ...+.++|+.|++... ++....           ..++.+++..+ +.++.- .    ....+.+++..++.-. .....
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~s~dg~-~l~v~~-~----~~~~v~~~d~~~~~~~~~~~~~  130 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLK-----------PFGATINNTTQ-TLWFGN-T----VNSAVTAIDAKTGEVKGRLVLD  130 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC-----------CCSEEEETTTT-EEEEEE-T----TTTEEEEEETTTCCEEEEEESC
T ss_pred             CccEEEEcCCCCeEEEEEecCCC-----------cceEEECCCCC-EEEEEe-c----CCCEEEEEeCCCCeeEEEEecC
Confidence            4579999999987544 332111           11355666543 222221 1    2347889998877532 22221


Q ss_pred             --CC-----e-eEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEE-EeCCeEEE
Q 045675          198 --TG-----S-CVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKAL-SYDQSLAL  267 (382)
Q Consensus       198 --~~-----~-~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~-~~~g~L~~  267 (382)
                        ..     + ...   .-.+.-+|...++...+.    ...|..+|+.+.+... ++.....   ...+. .-+|+..+
T Consensus       131 ~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~  200 (353)
T 3vgz_A          131 DRKRTEEVRPLQPR---ELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTGKM---STGLALDSEGKRLY  200 (353)
T ss_dssp             CCCCCSSCCCCEEE---EEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCCTT---CCCCEEETTTTEEE
T ss_pred             CCccccccCCCCCc---eEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCCCc---cceEEECCCCCEEE
Confidence              10     0 011   112233565444443221    2479999998876543 3422211   11222 23555433


Q ss_pred             EEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC-----cccceEEeeCCc-EEEEEcC--eEEEEeCCCCcEEE
Q 045675          268 AVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-----IAWPVGSFRDSK-IIMKSVD--QFFLFNPKTKRNFI  337 (382)
Q Consensus       268 ~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-----~~~~~~~~~~g~-l~l~~~~--~~~~yd~~t~~~~~  337 (382)
                      +...        ...+.+|.+...   .....++...     ...-+.+..+|. +++....  .+..||+++++...
T Consensus       201 ~~~~--------~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          201 TTNA--------DGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             EECT--------TSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             EEcC--------CCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            3333        456667766554   3333343311     122356666777 5555543  89999999887544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=88.74  E-value=11  Score=32.44  Aligned_cols=194  Identities=11%  Similarity=0.059  Sum_probs=94.1

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeee-cCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEV-AAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~-~~~~  198 (382)
                      ...++++||.+++...+..+.....   ..  ...++.+++..+...|.   .    ....+.+|+.. +..+.. ....
T Consensus        45 ~~~i~~~d~~~g~~~~~~~~~~~~~---~~--~~~~i~~~~~~g~l~v~---~----~~~~l~~~d~~-g~~~~~~~~~~  111 (314)
T 1pjx_A           45 AGEILRIDLKTGKKTVICKPEVNGY---GG--IPAGCQCDRDANQLFVA---D----MRLGLLVVQTD-GTFEEIAKKDS  111 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTE---EC--CEEEEEECSSSSEEEEE---E----TTTEEEEEETT-SCEEECCSBCT
T ss_pred             CCEEEEEeCCCCcEEEEEecccCCC---CC--CCceEEEecCCCcEEEE---E----CCCCEEEEeCC-CCEEEEEeccC
Confidence            3478999999988776543110000   01  23466777653332221   1    11268888887 666544 2221


Q ss_pred             CeeEEeCCcceEEE--CceEEEEeeccc---------ccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-----eC
Q 045675          199 GSCVIYGGQDAVAV--KGVLHWIANGIG---------VLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-----YD  262 (382)
Q Consensus       199 ~~~~~~~~~~~v~~--~G~lywl~~~~~---------~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-----~~  262 (382)
                      ..... ..-..+.+  +|.+|+......         .......|..+|.. .++..+.-...   ....++.     -+
T Consensus       112 ~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~~i~~~~~~d~d  186 (314)
T 1pjx_A          112 EGRRM-QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ---FPNGIAVRHMNDGR  186 (314)
T ss_dssp             TSCBC-BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---SEEEEEEEECTTSC
T ss_pred             CCccc-cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---CcceEEEecccCCC
Confidence            10000 00123333  577766543220         00012478999987 55544311100   1122332     35


Q ss_pred             Ce-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe-ecC----CcccceEEeeCCcEEEEEc--CeEEEEeCCCC
Q 045675          263 QS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT-AFE----RIAWPVGSFRDSKIIMKSV--DQFFLFNPKTK  333 (382)
Q Consensus       263 g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i-~~~----~~~~~~~~~~~g~l~l~~~--~~~~~yd~~t~  333 (382)
                      |+ |++....        ...+.+|.++.. + ......+ .+.    ....-+++..+|.|++...  +.+..||++++
T Consensus       187 g~~l~v~~~~--------~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          187 PYQLIVAETP--------TKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEEEEEETT--------TTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CCEEEEEECC--------CCeEEEEECCCC-CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence            53 5555443        567777776632 3 3322211 222    1122344456778888763  38999999955


Q ss_pred             c-EEEEee
Q 045675          334 R-NFILPI  340 (382)
Q Consensus       334 ~-~~~v~~  340 (382)
                      + ...+..
T Consensus       258 ~~~~~~~~  265 (314)
T 1pjx_A          258 QPKMRIRC  265 (314)
T ss_dssp             SCSEEEEC
T ss_pred             cEeEEEeC
Confidence            4 444443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=88.70  E-value=11  Score=32.59  Aligned_cols=100  Identities=6%  Similarity=-0.032  Sum_probs=55.5

Q ss_pred             cEEEEEECCC-ceeeE-----eCCCCCCCCCeeeEEE-eCCe-EEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEe
Q 045675          230 KFVVSYDMNL-ELFWR-----TAMPELPTDCYVKALS-YDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNT  300 (382)
Q Consensus       230 ~~i~~fD~~~-~~~~~-----i~~P~~~~~~~~~l~~-~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i  300 (382)
                      ..|..||+.+ .+...     +..+...  ....+.. -+|+ |++....        ...+.+|.++...+ +.....+
T Consensus       151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVAQDPAEVTTVEGA--GPRHMVFHPNEQYAYCVNEL--------NSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTC--CEEEEEECTTSSEEEEEETT--------TTEEEEEESSCTTSCCEEEEEE
T ss_pred             CEEEEEEecCCCceeeecccccccCCCC--CcceEEECCCCCEEEEEeCC--------CCEEEEEEecCCCCcEEEEeec
Confidence            4789999987 65542     3333221  2222333 3666 4444333        67899999975434 5544444


Q ss_pred             e-cCC----c--ccceEEeeCCc-EEEEEcC--eEEEEeCC--CCcEEEEe
Q 045675          301 A-FER----I--AWPVGSFRDSK-IIMKSVD--QFFLFNPK--TKRNFILP  339 (382)
Q Consensus       301 ~-~~~----~--~~~~~~~~~g~-l~l~~~~--~~~~yd~~--t~~~~~v~  339 (382)
                      . +..    .  ...+.+..+|+ |++....  .+.+||++  +++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~  271 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  271 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEee
Confidence            2 111    1  12355666776 5545532  88889887  55666653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=87.62  E-value=16  Score=33.00  Aligned_cols=178  Identities=10%  Similarity=0.098  Sum_probs=95.3

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.|||..+++...+-.....      .  ....+.+.+. +.+-+++.      .+..+.+|+..++.-...-....
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~------~--~v~~v~~s~~-~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~  176 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDES------T--YVASVKWSHD-GSFLSVGL------GNGLVDIYDVESQTKLRTMAGHQ  176 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTT------C--CEEEEEECTT-SSEEEEEE------TTSCEEEEETTTCCEEEEECCCS
T ss_pred             CCeEEEeeCCCCcEeEeeecCCC------C--CEEEEEECCC-CCEEEEEC------CCCeEEEEECcCCeEEEEecCCC
Confidence            34899999999987654433211      1  2345667773 34433332      23478999988765322211111


Q ss_pred             eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCcc
Q 045675          200 SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFR  276 (382)
Q Consensus       200 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~  276 (382)
                       ...    ..+..+|.+...+..+      ..|..+|+.+..  ...+.....   ....+... +|.+.+....     
T Consensus       177 -~~v----~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~-----  237 (401)
T 4aez_A          177 -ARV----GCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHSS---EVCGLAWRSDGLQLASGGN-----  237 (401)
T ss_dssp             -SCE----EEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSS---CEEEEEECTTSSEEEEEET-----
T ss_pred             -Cce----EEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCCC---CeeEEEEcCCCCEEEEEeC-----
Confidence             111    3344466655554443      588899997432  222221111   22333332 5666555554     


Q ss_pred             CCCCCeEEEEEECCCCCeeEEEEee-cCCcccceEEeeCCc-EEEEEc---C-eEEEEeCCCCcEEE
Q 045675          277 SRLSNRFELWVMNEGKGWTRTFNTA-FERIAWPVGSFRDSK-IIMKSV---D-QFFLFNPKTKRNFI  337 (382)
Q Consensus       277 ~~~~~~~~iW~l~~~~~W~~~~~i~-~~~~~~~~~~~~~g~-l~l~~~---~-~~~~yd~~t~~~~~  337 (382)
                         ...+.+|.+...   ..+..+. .......+.+..++. ++....   + .+.+||+++++...
T Consensus       238 ---d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          238 ---DNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             ---TSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred             ---CCeEEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence               678999998765   2333332 222244555555554 655543   3 89999998876443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=87.50  E-value=4.5  Score=40.35  Aligned_cols=136  Identities=17%  Similarity=0.079  Sum_probs=68.0

Q ss_pred             CEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCe
Q 045675          179 AIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCY  255 (382)
Q Consensus       179 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~  255 (382)
                      ..+.+++..+..-+.+......    . ..++.+   +|.|||.....     ...|.++|+....-..+... .. ...
T Consensus       475 ~~I~v~d~dg~~~~~l~~~~~~----~-P~giavDp~~g~ly~td~~~-----~~~I~~~~~dG~~~~~l~~~-~l-~~P  542 (699)
T 1n7d_A          475 GTVSVADTKGVKRKTLFREQGS----K-PRAIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGVDIYSLVTE-NI-QWP  542 (699)
T ss_dssp             SCEEEEBSSSCCEEEECCCSSC----C-CCCEECCSSSSCCEECCCSS-----SCCEEBCCSSSCCCCEESCS-SC-SSC
T ss_pred             CeEEEEecCCCceEEEEeCCCC----C-cceEEEccCCCcEEEcccCC-----CCeEEEEeCCCCCeeEEEeC-CC-CCc
Confidence            3567777665433332211000    1 133444   68999976432     24788888865444333111 11 022


Q ss_pred             eeEEEe--CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCC-cEEEEEcC--eEEEEe
Q 045675          256 VKALSY--DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDS-KIIMKSVD--QFFLFN  329 (382)
Q Consensus       256 ~~l~~~--~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g-~l~l~~~~--~~~~yd  329 (382)
                      -.|+..  +++|+++...        ...|.+..++.. . .++ .+.. ..+..|.++.-++ .||+....  +|..+|
T Consensus       543 nGlavd~~~~~LY~aD~~--------~~~I~~~d~dG~-~-~~~-~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSK--------LHSISSIDVNGG-N-RKT-ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CCEEECTTTCCEEEEETT--------TTEEEEECSSSS-C-CEE-ECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEE
T ss_pred             cEEEEeccCCEEEEEecC--------CCeEEEEccCCC-c-eEE-EEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEE
Confidence            234543  6788887765        445544444332 1 111 1221 2234455544333 46655543  899999


Q ss_pred             CCCCcEEE
Q 045675          330 PKTKRNFI  337 (382)
Q Consensus       330 ~~t~~~~~  337 (382)
                      +.+++...
T Consensus       612 ~~~G~~~~  619 (699)
T 1n7d_A          612 RLTGSDVN  619 (699)
T ss_dssp             TTTEEEEE
T ss_pred             ccCCCceE
Confidence            98776544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=87.16  E-value=13  Score=31.61  Aligned_cols=184  Identities=10%  Similarity=0.054  Sum_probs=89.4

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      +++|+....   ...+.|||..+++....-.....         ....+.+.+.. .+-+++.      .+..+.+++..
T Consensus        29 ~~~l~s~~~---dg~v~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~-~~l~~~~------~dg~i~~~~~~   89 (313)
T 3odt_A           29 DSKVASVSR---DGTVRLWSKDDQWLGTVVYTGQG---------FLNSVCYDSEK-ELLLFGG------KDTMINGVPLF   89 (313)
T ss_dssp             TTEEEEEET---TSEEEEEEESSSEEEEEEEECSS---------CEEEEEEETTT-TEEEEEE------TTSCEEEEETT
T ss_pred             CCEEEEEEc---CCcEEEEECCCCEEEEEeecCCc---------cEEEEEECCCC-CEEEEec------CCCeEEEEEee
Confidence            445544444   45789999877664432221111         23356666643 3333332      22366777765


Q ss_pred             CCC-eeeecCCCC-eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE--EeCC
Q 045675          188 TGK-WKEVAAGTG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL--SYDQ  263 (382)
Q Consensus       188 t~~-W~~~~~~~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~--~~~g  263 (382)
                      ... .+....... ....    ..+..+|.....+..+      ..|..+|... ....+.....   ....+.  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~i----~~~~~~~~~l~~~~~d------~~i~~~d~~~-~~~~~~~~~~---~v~~~~~~~~~~  155 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNV----CSLSFQDGVVISGSWD------KTAKVWKEGS-LVYNLQAHNA---SVWDAKVVSFSE  155 (313)
T ss_dssp             CCTTSCC-CEECCCSSCE----EEEEEETTEEEEEETT------SEEEEEETTE-EEEEEECCSS---CEEEEEEEETTT
T ss_pred             ecCCCCcccchhhcccCE----EEEEecCCEEEEEeCC------CCEEEEcCCc-EEEecccCCC---ceeEEEEccCCC
Confidence            431 111111111 1111    3334456555544443      4788888322 2222222211   122222  2256


Q ss_pred             eEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEee--cCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          264 SLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTA--FERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       264 ~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~--~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                      .+.++...        ...+.+|...     .....+.  .......+.+..++.++....+ .+..||+++++...
T Consensus       156 ~~l~~~~~--------d~~i~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~  219 (313)
T 3odt_A          156 NKFLTASA--------DKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLR  219 (313)
T ss_dssp             TEEEEEET--------TSCEEEEETT-----EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CEEEEEEC--------CCCEEEEecC-----ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhh
Confidence            66655554        6788999722     1222222  2233455666677775555555 89999998876443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=86.67  E-value=16  Score=32.06  Aligned_cols=176  Identities=9%  Similarity=0.025  Sum_probs=88.9

Q ss_pred             eEEEEcccccceecc-CCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC----CCeeeecC
Q 045675          122 AFVLWNPATNEFKGL-PTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST----GKWKEVAA  196 (382)
Q Consensus       122 ~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t----~~W~~~~~  196 (382)
                      .+...++.+++...+ |...           ...++.+|+..+...+.-.      ....+..++..+    ..-+.+-.
T Consensus        11 ~I~~i~~~~~~~~~~~~~~~-----------~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNLR-----------NVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             SEEEEETTSCCCEEEECSCS-----------SEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEEC
T ss_pred             eEEEEECCCcceEehhcCCC-----------ceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEe
Confidence            567778777765443 3222           2447888876654332221      234677777665    11121111


Q ss_pred             CCCeeEEeCCcceEE---ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe--CCeEEEEEec
Q 045675          197 GTGSCVIYGGQDAVA---VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY--DQSLALAVYP  271 (382)
Q Consensus       197 ~~~~~~~~~~~~~v~---~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~--~g~L~~~~~~  271 (382)
                      .  ...  . ..++.   .+|.+||.....      ..|.++|+....-..+.-. .. .....+++.  +|.|++....
T Consensus        74 ~--~~~--~-p~glavd~~~~~ly~~d~~~------~~I~~~~~~g~~~~~~~~~-~~-~~P~~iavdp~~g~ly~~d~~  140 (316)
T 1ijq_A           74 R--DIQ--A-PDGLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFRE-NG-SKPRAIVVDPVHGFMYWTDWG  140 (316)
T ss_dssp             S--SCS--C-CCEEEEETTTTEEEEEETTT------TEEEEEETTSSSEEEEEEC-TT-CCEEEEEEETTTTEEEEEECS
T ss_pred             C--CCC--C-cCEEEEeecCCeEEEEECCC------CEEEEEeCCCCceEEEEEC-CC-CCcceEEeCCCCCEEEEEccC
Confidence            0  000  1 12333   368999986543      4899999987654433211 11 133445553  6788877653


Q ss_pred             CCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEE--ee-CCcEEEEEcC--eEEEEeCCCCcEEEE
Q 045675          272 GLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGS--FR-DSKIIMKSVD--QFFLFNPKTKRNFIL  338 (382)
Q Consensus       272 ~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~--~~-~g~l~l~~~~--~~~~yd~~t~~~~~v  338 (382)
                             ....+....++..  -.++  +-...+..|-++  .. ++.||+....  ++..+|+.+...+.+
T Consensus       141 -------~~~~I~~~~~dG~--~~~~--~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          141 -------TPAKIKKGGLNGV--DIYS--LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             -------SSCEEEEEETTSC--CEEE--EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -------CCCeEEEEcCCCC--CeEE--EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence                   1234433333332  1221  211234445444  32 3457776654  899999987655554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=86.60  E-value=26  Score=34.43  Aligned_cols=95  Identities=12%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             cEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc
Q 045675          230 KFVVSYDMNLELFWRTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP  308 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~  308 (382)
                      ..|..+|+.+.+.........  .....+... +|++.+....        ...+.||.+...   ..+..+........
T Consensus       541 ~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~--------Dg~i~iwd~~~~---~~~~~~~~~~~v~~  607 (694)
T 3dm0_A          541 KTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGK--------DGVVLLWDLAEG---KKLYSLEANSVIHA  607 (694)
T ss_dssp             SCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET--------TSBCEEEETTTT---EEEECCBCSSCEEE
T ss_pred             CeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeC--------CCeEEEEECCCC---ceEEEecCCCcEEE
Confidence            478889998765543321111  122333333 6776665554        678999998876   34444443344555


Q ss_pred             eEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          309 VGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       309 ~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                      +++..++.++....+ .+.+||+++++...
T Consensus       608 ~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          608 LCFSPNRYWLCAATEHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             EEEcCCCcEEEEEcCCCEEEEECCCCCChh
Confidence            666677776655554 89999999987543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=86.16  E-value=11  Score=32.92  Aligned_cols=113  Identities=7%  Similarity=-0.008  Sum_probs=62.3

Q ss_pred             ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675          212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      -+|.+||.....      ..|..+|+.+.++..+..+...  ....+.. -+|+|++....  ..  .....  |+.++.
T Consensus        54 ~~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~--~~~~i~~~~dg~l~v~~~~--~~--~~~~~--i~~~d~  119 (333)
T 2dg1_A           54 RQGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLG--DF--KSTGG--IFAATE  119 (333)
T ss_dssp             TTSCEEEEETTT------CEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECT--TS--SSCCE--EEEECT
T ss_pred             CCCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCCC--CcceEEECCCCcEEEEeCC--CC--CCCce--EEEEeC
Confidence            468888876543      4799999998888765322111  2344444 37888877654  10  01134  444543


Q ss_pred             CCCeeE-EEE-eecCCcccceEEeeCCcEEEEEc--------CeEEEEeCCCCcEEEE
Q 045675          291 GKGWTR-TFN-TAFERIAWPVGSFRDSKIIMKSV--------DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       291 ~~~W~~-~~~-i~~~~~~~~~~~~~~g~l~l~~~--------~~~~~yd~~t~~~~~v  338 (382)
                      ..+... ... .........+.+..+|.+++...        ..++.||+++++.+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence            312221 111 11111123345556777887764        2799999988776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.10  E-value=16  Score=31.61  Aligned_cols=180  Identities=10%  Similarity=-0.016  Sum_probs=91.9

Q ss_pred             ceeEEEEcc-cccceeccCC--CCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC------
Q 045675          120 GMAFVLWNP-ATNEFKGLPT--PSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK------  190 (382)
Q Consensus       120 ~~~~~V~NP-~T~~~~~LP~--~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~------  190 (382)
                      ...+.+||. .+++...+..  ...          ....+.+.+  +.+.+.+.      .+..+.+|+..+..      
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~----------~v~~l~~~~--~~~l~s~~------~d~~i~iwd~~~~~~~~~~~  139 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANL----------GICRICKYG--DDKLIAAS------WDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCS----------CEEEEEEET--TTEEEEEE------TTSEEEEECHHHHTTBCEEE
T ss_pred             CCeEEEEEeccCCceEeccccCCCC----------ceEEEEeCC--CCEEEEEc------CCCeEEEEcccccccccccc
Confidence            458999999 8888776655  222          233567777  44444332      23478888765400      


Q ss_pred             -eeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCC-ce--eeEeCCCCCCCCCeeeEEEe--CCe
Q 045675          191 -WKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNL-EL--FWRTAMPELPTDCYVKALSY--DQS  264 (382)
Q Consensus       191 -W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~-~~--~~~i~~P~~~~~~~~~l~~~--~g~  264 (382)
                       .+...........    .++.+++.....+..      ...|..+|+.+ ..  ......+...  ....+...  +|.
T Consensus       140 ~~~~~~~~~~~~~v----~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~  207 (342)
T 1yfq_A          140 KNLNSNNTKVKNKI----FTMDTNSSRLIVGMN------NSQVQWFRLPLCEDDNGTIEESGLKY--QIRDVALLPKEQE  207 (342)
T ss_dssp             EESCSSSSSSCCCE----EEEEECSSEEEEEES------TTEEEEEESSCCTTCCCEEEECSCSS--CEEEEEECSGGGC
T ss_pred             cCCeeeEEeeCCce----EEEEecCCcEEEEeC------CCeEEEEECCccccccceeeecCCCC--ceeEEEECCCCCC
Confidence             1111111111111    223333222222222      24899999987 32  3333333222  23334443  566


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCC--CC-eeEEEEeecC----------CcccceEEeeCCcEE-EEEcC-eEEEEe
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEG--KG-WTRTFNTAFE----------RIAWPVGSFRDSKII-MKSVD-QFFLFN  329 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~--~~-W~~~~~i~~~----------~~~~~~~~~~~g~l~-l~~~~-~~~~yd  329 (382)
                      +.++...        ...+.||.++..  .. ......+...          .....+.+..++..+ ....+ .+.+||
T Consensus       208 ~l~~~~~--------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  279 (342)
T 1yfq_A          208 GYACSSI--------DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EEEEEET--------TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EEEEEec--------CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEc
Confidence            6666554        678999998765  10 1112222111          023345555667644 44444 899999


Q ss_pred             CCCCcEEE
Q 045675          330 PKTKRNFI  337 (382)
Q Consensus       330 ~~t~~~~~  337 (382)
                      +++++...
T Consensus       280 ~~~~~~~~  287 (342)
T 1yfq_A          280 LQTRKKIK  287 (342)
T ss_dssp             TTTTEEEE
T ss_pred             CccHhHhh
Confidence            99887543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=85.89  E-value=26  Score=33.80  Aligned_cols=194  Identities=12%  Similarity=-0.007  Sum_probs=100.0

Q ss_pred             CceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST  186 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss  186 (382)
                      ++++++....  ...+.|+|+.|++... +|....           ..++.++|..+ |-.+.  .    ....+.+|+.
T Consensus       166 ~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~-----------p~~v~~SpDGr-~lyv~--~----~dg~V~viD~  225 (567)
T 1qks_A          166 ENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYA-----------VHISRLSASGR-YLFVI--G----RDGKVNMIDL  225 (567)
T ss_dssp             GGEEEEEETT--TTEEEEEETTTCCEEEEEECSSC-----------EEEEEECTTSC-EEEEE--E----TTSEEEEEET
T ss_pred             CceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCC-----------ccceEECCCCC-EEEEE--c----CCCeEEEEEC
Confidence            4566555543  5689999999988653 543221           22567777543 43332  2    2347999998


Q ss_pred             CCCCeeeecCC-CCeeEEeCCcceEE----ECceEEEEeecccccccccEEEEEECCCcee-eEeCCCCC-CC------C
Q 045675          187 STGKWKEVAAG-TGSCVIYGGQDAVA----VKGVLHWIANGIGVLVNEKFVVSYDMNLELF-WRTAMPEL-PT------D  253 (382)
Q Consensus       187 ~t~~W~~~~~~-~~~~~~~~~~~~v~----~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~-~~i~~P~~-~~------~  253 (382)
                      .+.+-+.+... ....+.   +-++.    -+|+.-++....     ...+.++|..+.+- ..++.... ..      .
T Consensus       226 ~~~t~~~v~~i~~G~~P~---~ia~s~~~~pDGk~l~v~n~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~  297 (567)
T 1qks_A          226 WMKEPTTVAEIKIGSEAR---SIETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  297 (567)
T ss_dssp             TSSSCCEEEEEECCSEEE---EEEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CCCCCcEeEEEecCCCCc---eeEEccccCCCCCEEEEEEcc-----CCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence            52222222222 111111   12222    267655555443     24788999877544 33443211 00      0


Q ss_pred             -CeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEE-EEEc--CeEEEE
Q 045675          254 -CYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKII-MKSV--DQFFLF  328 (382)
Q Consensus       254 -~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~-l~~~--~~~~~y  328 (382)
                       ....+... ++...++...       ....+.+.-..+. ...++..|+........++..+|+.+ +...  +++.++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~-------~~g~v~~vd~~~~-~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVK-------ETGKILLVDYTDL-NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEET-------TTTEEEEEETTCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             CceEEEEEcCCCCEEEEEec-------CCCeEEEEecCCC-ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence             11122222 3344444443       2343333333232 24555666655555566777788744 4443  389999


Q ss_pred             eCCCCcEEE
Q 045675          329 NPKTKRNFI  337 (382)
Q Consensus       329 d~~t~~~~~  337 (382)
                      |.++++...
T Consensus       370 D~~t~kl~~  378 (567)
T 1qks_A          370 DTKEGKLVA  378 (567)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCCcEEE
Confidence            999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=85.86  E-value=18  Score=31.90  Aligned_cols=179  Identities=13%  Similarity=0.156  Sum_probs=85.9

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      +..+.|||..++++.........+..      ....+.+.|.. .+-+.+-      .+..+.+++..++.++.......
T Consensus        37 D~~i~iw~~~~~~~~~~~~~~~~h~~------~v~~~~~sp~g-~~l~s~s------~D~~v~iw~~~~~~~~~~~~~~~  103 (345)
T 3fm0_A           37 DRRIRIWGTEGDSWICKSVLSEGHQR------TVRKVAWSPCG-NYLASAS------FDATTCIWKKNQDDFECVTTLEG  103 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECSSCSS------CEEEEEECTTS-SEEEEEE------TTSCEEEEEECCC-EEEEEEECC
T ss_pred             CCeEEEEEcCCCcceeeeeeccccCC------cEEEEEECCCC-CEEEEEE------CCCcEEEEEccCCCeEEEEEccC
Confidence            45788998887765422111111111      23356677743 3333222      23467888877776544332211


Q ss_pred             e-eEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCc-eeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCC
Q 045675          200 S-CVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLE-LFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLG  274 (382)
Q Consensus       200 ~-~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~-~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~  274 (382)
                      + ...    .++.+  +|.+...+..+      ..|..+|+.++ ....+..-.........+.. -+|.+.+....   
T Consensus       104 h~~~v----~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---  170 (345)
T 3fm0_A          104 HENEV----KSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY---  170 (345)
T ss_dssp             CSSCE----EEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET---
T ss_pred             CCCCc----eEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC---
Confidence            0 011    11222  45544444433      46777887654 22222111111111222332 25665554444   


Q ss_pred             ccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCCcEEEEE-cC-eEEEEeC
Q 045675          275 FRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDSKIIMKS-VD-QFFLFNP  330 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~  330 (382)
                           ...+.+|.+... .|.....+.- ...+.-+.+..+|..++.. .+ .+.+||.
T Consensus       171 -----d~~i~~w~~~~~-~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          171 -----DDTVKLYREEED-DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             -----TSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             -----CCcEEEEEecCC-CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence                 668999988765 4766655532 2224445666677654443 34 6767764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=85.79  E-value=18  Score=31.87  Aligned_cols=208  Identities=12%  Similarity=-0.033  Sum_probs=103.5

Q ss_pred             CceEEEeeCCCCceeEEEEccccccee--ccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          108 NGLLCLDVSSAFGMAFVLWNPATNEFK--GLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       108 ~Gll~~~~~~~~~~~~~V~NP~T~~~~--~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +|.|...+..  ...+..+++.++...  .+.. ...         ...|+.+|+..+...+.-      .....+++++
T Consensus        46 ~~~lyw~D~~--~~~I~r~~~~g~~~~~~~~~~-~l~---------~p~glavd~~~g~ly~~d------~~~~~I~~~~  107 (318)
T 3sov_A           46 HGLIYWSDVS--EEAIKRTEFNKTESVQNVVVS-GLL---------SPDGLACDWLGEKLYWTD------SETNRIEVSN  107 (318)
T ss_dssp             GTEEEEEETT--TTEEEEEETTSSSCCCEEEEE-CCS---------CCCEEEEETTTTEEEEEE------TTTTEEEEEE
T ss_pred             CCEEEEEECC--CCcEEEEEccCCCceEEEEcC-CCC---------CccEEEEEcCCCeEEEEE------CCCCEEEEEE
Confidence            5666655543  345666776655311  1111 000         122677776554433221      1234778888


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEe-
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSY-  261 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~-  261 (382)
                      ..+..=+.+.......     ..++.+   +|.|||.....     ...|.++|+....-+.+-. ... ...-.|+.. 
T Consensus       108 ~dG~~~~~l~~~~~~~-----P~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~-~~l-~~Pnglavd~  175 (318)
T 3sov_A          108 LDGSLRKVLFWQELDQ-----PRAIALDPSSGFMYWTDWGE-----VPKIERAGMDGSSRFIIIN-SEI-YWPNGLTLDY  175 (318)
T ss_dssp             TTSCSCEEEECSSCSS-----EEEEEEEGGGTEEEEEECSS-----SCEEEEEETTSCSCEEEEC-SSC-SCEEEEEEET
T ss_pred             CCCCcEEEEEeCCCCC-----ccEEEEeCCCCEEEEEecCC-----CCEEEEEEcCCCCeEEEEE-CCC-CCccEEEEec
Confidence            7654322221110011     123333   58999987432     2489999997644333311 111 123445554 


Q ss_pred             -CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCC-cEEEEEcC--eEEEEeCCCCcE-E
Q 045675          262 -DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDS-KIIMKSVD--QFFLFNPKTKRN-F  336 (382)
Q Consensus       262 -~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g-~l~l~~~~--~~~~yd~~t~~~-~  336 (382)
                       +|+||++...        ...+....++.. . .++. +. ..+..|.++.-++ .+|.....  ++..+|+.+++. +
T Consensus       176 ~~~~lY~aD~~--------~~~I~~~d~dG~-~-~~~~-~~-~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          176 EEQKLYWADAK--------LNFIHKSNLDGT-N-RQAV-VK-GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             TTTEEEEEETT--------TTEEEEEETTSC-S-CEEE-EC-SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             cCCEEEEEECC--------CCEEEEEcCCCC-c-eEEE-ec-CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence             7889988765        555555555433 1 2111 11 2346676665334 46666543  899999976653 4


Q ss_pred             EEeeeCCCCCeEEEEEEeeceee
Q 045675          337 ILPIDSGMGYSYKVFTYVDSIVA  359 (382)
Q Consensus       337 ~v~~~~~~~~~~~~~~y~~SLv~  359 (382)
                      .+......  -..+.+|.++..|
T Consensus       244 ~i~~~~~~--P~~i~v~~~~~q~  264 (318)
T 3sov_A          244 EIHSDIFS--PMDIHAFSQQRQP  264 (318)
T ss_dssp             EEECCCSS--CCCEEEECGGGSC
T ss_pred             EEeCCCCC--CcEEEEecccccc
Confidence            44332111  1334566665543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=85.58  E-value=33  Score=34.67  Aligned_cols=108  Identities=8%  Similarity=-0.001  Sum_probs=62.7

Q ss_pred             CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE--eCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS--YDQSLALAVYPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      +|.|||.....      ..|.++|+....-..+... .. .....|++  .+|.||+....  .     ...|.+-.++.
T Consensus       482 ~~~LY~tD~~~------~~I~v~~ldG~~~~~l~~~-~l-~~P~gIaVDp~~g~LYwtD~g--~-----~~~I~~~~~dG  546 (791)
T 3m0c_C          482 HSNIYWTDSVL------GTVSVADTKGVKRKTLFRE-NG-SKPRAIVVDPVHGFMYWTDWG--T-----PAKIKKGGLNG  546 (791)
T ss_dssp             TTEEEEEETTT------TEEEEEETTSSSEEEEEEC-TT-CCEEEEEEETTTTEEEEEECS--S-----SCEEEEEETTS
T ss_pred             CCcEEEEecCC------CeEEEEeCCCCeEEEEEeC-CC-CCcceEEEecCCCCEEEecCC--C-----CCeEEEEecCC
Confidence            47999987654      5899999987655444211 11 12345555  36889887754  1     24444444433


Q ss_pred             CCCeeEEEEeecCCcccceEEe---eCCcEEEEEcC--eEEEEeCCCCcEEEEe
Q 045675          291 GKGWTRTFNTAFERIAWPVGSF---RDSKIIMKSVD--QFFLFNPKTKRNFILP  339 (382)
Q Consensus       291 ~~~W~~~~~i~~~~~~~~~~~~---~~g~l~l~~~~--~~~~yd~~t~~~~~v~  339 (382)
                      .    ....+-...+..|.++.   .++.||+....  +|..+|+.....+.+.
T Consensus       547 ~----~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          547 V----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             C----CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             C----ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence            2    12222223445666554   24557777654  8999999877666553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=85.22  E-value=17  Score=30.95  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             cEEEEEECCCceee-EeCCCCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC-cc
Q 045675          230 KFVVSYDMNLELFW-RTAMPELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-IA  306 (382)
Q Consensus       230 ~~i~~fD~~~~~~~-~i~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-~~  306 (382)
                      ..|..+|+.+.+.. .+.....   ....+... +|.  ++...       ....+.+|.+...   .....+.... ..
T Consensus       205 g~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~--l~~~~-------~dg~v~iwd~~~~---~~~~~~~~~~~~i  269 (313)
T 3odt_A          205 GLIKLVDMHTGDVLRTYEGHES---FVYCIKLLPNGD--IVSCG-------EDRTVRIWSKENG---SLKQVITLPAISI  269 (313)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS---CEEEEEECTTSC--EEEEE-------TTSEEEEECTTTC---CEEEEEECSSSCE
T ss_pred             CeEEEEECCchhhhhhhhcCCc---eEEEEEEecCCC--EEEEe-------cCCEEEEEECCCC---ceeEEEeccCceE
Confidence            48999999875543 2332221   23334333 554  33333       2678999988776   2333333222 24


Q ss_pred             cceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          307 WPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       307 ~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                      .-+.+..++.++....+ .+.+||++++++..
T Consensus       270 ~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          270 WSVDCMSNGDIIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEEESCGGGCCC
T ss_pred             EEEEEccCCCEEEEeCCCcEEEEeCCCCceee
Confidence            44556667776666655 89999999887544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=84.49  E-value=28  Score=33.18  Aligned_cols=185  Identities=11%  Similarity=0.028  Sum_probs=95.5

Q ss_pred             ceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCC
Q 045675          109 GLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTST  188 (382)
Q Consensus       109 Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t  188 (382)
                      ++++....   .....+||..|++...|...+.            ..+.++|.+ ++-+.....  ......+.+++..+
T Consensus       123 ~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~------------~~~~~spDG-~~la~~~~~--~~~~~~i~~~d~~~  184 (582)
T 3o4h_A          123 AVVFTGAT---EDRVALYALDGGGLRELARLPG------------FGFVSDIRG-DLIAGLGFF--GGGRVSLFTSNLSS  184 (582)
T ss_dssp             CEEEEEEC---SSCEEEEEEETTEEEEEEEESS------------CEEEEEEET-TEEEEEEEE--ETTEEEEEEEETTT
T ss_pred             eEEEEecC---CCCceEEEccCCcEEEeecCCC------------ceEEECCCC-CEEEEEEEc--CCCCeEEEEEcCCC
Confidence            45555444   2345589999988776653222            134455543 333322222  11223588888888


Q ss_pred             CCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeee------E-EEe
Q 045675          189 GKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVK------A-LSY  261 (382)
Q Consensus       189 ~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~------l-~~~  261 (382)
                      +.++.+....... .   .....-+|+..+.....    ....|..+|+.+.+...+.-.... .....      . ..-
T Consensus       185 g~~~~l~~~~~~~-~---~~~~SpDG~~l~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp  255 (582)
T 3o4h_A          185 GGLRVFDSGEGSF-S---SASISPGMKVTAGLETA----REARLVTVDPRDGSVEDLELPSKD-FSSYRPTAITWLGYLP  255 (582)
T ss_dssp             CCCEEECCSSCEE-E---EEEECTTSCEEEEEECS----SCEEEEEECTTTCCEEECCCSCSH-HHHHCCSEEEEEEECT
T ss_pred             CCceEeecCCCcc-c---cceECCCCCEEEEccCC----CeeEEEEEcCCCCcEEEccCCCcC-hhhhhhccccceeEcC
Confidence            8888764432211 1   13333477655543333    124799999998877722211110 00010      0 234


Q ss_pred             CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEc-C----eEEEEeCCCCcEE
Q 045675          262 DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSV-D----QFFLFNPKTKRNF  336 (382)
Q Consensus       262 ~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-~----~~~~yd~~t~~~~  336 (382)
                      ||++++....        ...+.||.+  . ....   .+ ......+.+. +|.+++... +    .++.+|.++ +.+
T Consensus       256 dg~~~~~~~~--------~g~~~l~~~--g-~~~~---~~-~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~~~  318 (582)
T 3o4h_A          256 DGRLAVVARR--------EGRSAVFID--G-ERVE---AP-QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-PLL  318 (582)
T ss_dssp             TSCEEEEEEE--------TTEEEEEET--T-EEEC---CC-SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-EEE
T ss_pred             CCcEEEEEEc--------CCcEEEEEE--C-Ceec---cC-CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-ceE
Confidence            7766665554        568999998  2 1211   11 1223334555 677554432 2    788888875 443


Q ss_pred             E
Q 045675          337 I  337 (382)
Q Consensus       337 ~  337 (382)
                      .
T Consensus       319 ~  319 (582)
T 3o4h_A          319 E  319 (582)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=84.43  E-value=18  Score=30.82  Aligned_cols=199  Identities=7%  Similarity=-0.075  Sum_probs=94.9

Q ss_pred             eeeccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEE-ee--------
Q 045675          103 IVGSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIV-NF--------  173 (382)
Q Consensus       103 ~~~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~-~~--------  173 (382)
                      +.-+.+|.|++....  ...+.++||.+++...+.........  .   ....+.+|+.. .+.+.-.. ..        
T Consensus        74 l~~~~dg~l~v~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~--~---~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           74 HCLNKQGHLIACSHG--LRRLERQREPGGEWESIADSFEGKKL--N---SPNDVCLAPDG-SLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             EEECTTCCEEEEETT--TTEEEEECSTTCCEEEEECEETTEEC--C---CCCCEEECTTS-CEEEEECSHHHHCGGGSSC
T ss_pred             eeECCCCcEEEEecC--CCeEEEEcCCCCcEEEEeeccCCCCC--C---CCCCEEECCCC-CEEEECCcccccccccccc
Confidence            333457776665542  35799999999987766432111000  0   11245566644 32221100 00        


Q ss_pred             --cCCCCCEEEEEECCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECC-Ccee---eEe
Q 045675          174 --QARYDAIAEVYSTSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMN-LELF---WRT  245 (382)
Q Consensus       174 --~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~-~~~~---~~i  245 (382)
                        .......+..|+.. +.-+....... .     ..++.+  +|.++ +....     ...|..||+. +.++   ..+
T Consensus       146 ~~~~~~~~~l~~~~~~-g~~~~~~~~~~-~-----~~gi~~s~dg~~l-v~~~~-----~~~i~~~~~~~~g~~~~~~~~  212 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD-GTLSAPIRDRV-K-----PNGLAFLPSGNLL-VSDTG-----DNATHRYCLNARGETEYQGVH  212 (296)
T ss_dssp             CCCCSSSCEEEEECTT-SCEEEEECCCS-S-----EEEEEECTTSCEE-EEETT-----TTEEEEEEECSSSCEEEEEEE
T ss_pred             ccccCCCcEEEEECCC-CCEEEeecCCC-C-----CccEEECCCCCEE-EEeCC-----CCeEEEEEECCCCcCcCCCeE
Confidence              00011245555554 44333322110 0     123333  67777 44433     2489999986 4454   111


Q ss_pred             CCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEE-eeCCc-EEEEEc
Q 045675          246 AMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGS-FRDSK-IIMKSV  322 (382)
Q Consensus       246 ~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~-~~~g~-l~l~~~  322 (382)
                      . .. .......+.. .+|.|++.. .  .       .+.+|  +.. + ..+..+....-...+.+ ..++. |++...
T Consensus       213 ~-~~-~~~~p~~i~~d~~G~l~v~~-~--~-------~v~~~--~~~-g-~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          213 F-TV-EPGKTDGLRVDAGGLIWASA-G--D-------GVHVL--TPD-G-DELGRVLTPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             E-CC-SSSCCCSEEEBTTSCEEEEE-T--T-------EEEEE--CTT-S-CEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred             e-eC-CCCCCCeEEECCCCCEEEEc-C--C-------eEEEE--CCC-C-CEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence            1 11 1111223443 478888766 3  2       34444  433 3 12233332221222334 23444 777777


Q ss_pred             CeEEEEeCCCCcEEEE
Q 045675          323 DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       323 ~~~~~yd~~t~~~~~v  338 (382)
                      +.++.++++++++++-
T Consensus       277 ~~l~~~~~~~~~~~~~  292 (296)
T 3e5z_A          277 TEFWSIETNVRGLEHH  292 (296)
T ss_dssp             TEEEEEECSCCBCCC-
T ss_pred             CeEEEEEccccccccc
Confidence            7999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=84.32  E-value=20  Score=31.19  Aligned_cols=189  Identities=11%  Similarity=0.035  Sum_probs=93.3

Q ss_pred             ceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          109 GLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       109 Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      |-+++....  ...+.|||..+++... +.....          ....+.+.|..+.+-+.+.      .+..+.+|+..
T Consensus        85 ~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~~l~s~~------~dg~i~iwd~~  146 (366)
T 3k26_A           85 HPLLAVAGS--RGIIRIINPITMQCIKHYVGHGN----------AINELKFHPRDPNLLLSVS------KDHALRLWNIQ  146 (366)
T ss_dssp             CEEEEEEET--TCEEEEECTTTCCEEEEEESCCS----------CEEEEEECSSCTTEEEEEE------TTSCEEEEETT
T ss_pred             CCEEEEecC--CCEEEEEEchhceEeeeecCCCC----------cEEEEEECCCCCCEEEEEe------CCCeEEEEEee
Confidence            444443332  5589999998877543 221111          2346677775455444332      23479999988


Q ss_pred             CCCeeeec-CCC-CeeEEeCCcceEE--ECceEEEEeecccccccccEEEEEECCCceeeE-eC----------------
Q 045675          188 TGKWKEVA-AGT-GSCVIYGGQDAVA--VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TA----------------  246 (382)
Q Consensus       188 t~~W~~~~-~~~-~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~----------------  246 (382)
                      ++.-...- ... .....    ..+.  -+|.....++.+      ..|..+|+.+.+... +.                
T Consensus       147 ~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEV----LSADYDLLGEKIMSCGMD------HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS  216 (366)
T ss_dssp             TTEEEEEECSTTSCSSCE----EEEEECTTSSEEEEEETT------SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred             cCeEEEEecccccccCce----eEEEECCCCCEEEEecCC------CCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence            76433221 110 10111    1121  135444433332      478888988654321 00                


Q ss_pred             ----CCCC-----CCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC-----------eeEEEEeecC-Cc
Q 045675          247 ----MPEL-----PTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-----------WTRTFNTAFE-RI  305 (382)
Q Consensus       247 ----~P~~-----~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-----------W~~~~~i~~~-~~  305 (382)
                          .|..     .......+... |.+.+....        ...+.+|.+.....           ...+..+... .-
T Consensus       217 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~--------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (366)
T 3k26_A          217 QKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSC--------ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD  287 (366)
T ss_dssp             EEECCCSEEECSSCSSCCCEEEEE-TTEEEEECS--------SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC
T ss_pred             eeeccCccccccCCcceEEEEEEc-CCEEEEEec--------CCEEEEEeCCCccccccccccCCcchheeccccccCCc
Confidence                0000     00111222222 555444443        67899999875421           2333333221 11


Q ss_pred             ccceEEeeC--CcEEEEEc-C-eEEEEeCCCCc
Q 045675          306 AWPVGSFRD--SKIIMKSV-D-QFFLFNPKTKR  334 (382)
Q Consensus       306 ~~~~~~~~~--g~l~l~~~-~-~~~~yd~~t~~  334 (382)
                      ...+.+..+  +.+++... + .+.+||+++++
T Consensus       288 v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          288 IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             SSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            333445556  77655554 3 89999999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=84.29  E-value=17  Score=31.55  Aligned_cols=105  Identities=7%  Similarity=0.037  Sum_probs=59.3

Q ss_pred             ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675          212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      -+|.+||.....      ..|..+|+.++.-..+..+.    ....++. -+|+|+++...        .....|+.++.
T Consensus        41 ~~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~----~p~gia~~~dG~l~vad~~--------~~~~~v~~~d~  102 (306)
T 2p4o_A           41 PDGTIFVTNHEV------GEIVSITPDGNQQIHATVEG----KVSGLAFTSNGDLVATGWN--------ADSIPVVSLVK  102 (306)
T ss_dssp             TTSCEEEEETTT------TEEEEECTTCCEEEEEECSS----EEEEEEECTTSCEEEEEEC--------TTSCEEEEEEC
T ss_pred             CCCCEEEEeCCC------CeEEEECCCCceEEEEeCCC----CceeEEEcCCCcEEEEecc--------CCcceEEEEcC
Confidence            378999987543      48999999876544445442    2334444 37888776654        22345666653


Q ss_pred             CCC-eeEEEEeecCCcccceEEeeCCcEEEEEc-C-eEEEEeCCCCc
Q 045675          291 GKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSV-D-QFFLFNPKTKR  334 (382)
Q Consensus       291 ~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~-~-~~~~yd~~t~~  334 (382)
                      .++ ...+..++-.....-.+...++.+++... . .++.+|+.+++
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence            324 54444432111122223344455666653 2 89999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=84.09  E-value=20  Score=31.07  Aligned_cols=184  Identities=10%  Similarity=0.047  Sum_probs=89.7

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCC--CCeEEEEEEeecCCCCCEEEEEECCCCC--eeeec
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDT--NDYVLVRIVNFQARYDAIAEVYSTSTGK--WKEVA  195 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~--~~ykvv~~~~~~~~~~~~~~vyss~t~~--W~~~~  195 (382)
                      ...+.|||..+++...+-....  .    .  ....+.+.+..  +.+-+.+.      .+..+.+|+..++.  -....
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~--~----~--~v~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~  108 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEK--A----K--PIKCGTFGATSLQQRYLATGD------FGGNLHIWNLEAPEMPVYSVK  108 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEE--S----S--CEEEEECTTCCTTTCCEEEEE------TTSCEEEECTTSCSSCSEEEC
T ss_pred             CcEEEEEeCCCCcccceeeecc--c----C--cEEEEEEcCCCCCCceEEEec------CCCeEEEEeCCCCCccEEEEE
Confidence            3578899988877543322111  0    0  23456676664  44444432      23478888887664  11211


Q ss_pred             CCCCeeEEeCCcc--eEEECceEEEEeecccccccccEEEEEECCCce--eeEeCCCCCCCC-CeeeEE-----EeCCeE
Q 045675          196 AGTGSCVIYGGQD--AVAVKGVLHWIANGIGVLVNEKFVVSYDMNLEL--FWRTAMPELPTD-CYVKAL-----SYDQSL  265 (382)
Q Consensus       196 ~~~~~~~~~~~~~--~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~--~~~i~~P~~~~~-~~~~l~-----~~~g~L  265 (382)
                      ........+....  +..-+|.....+..+      ..|..+|+.+..  ...+........ ....+.     ..+|.+
T Consensus       109 ~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (357)
T 3i2n_A          109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV  182 (357)
T ss_dssp             CCSSCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE
T ss_pred             ecccceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE
Confidence            1111000000000  122345544444433      478889998764  444443332111 122222     146666


Q ss_pred             EEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEee---CCcEE-EEEcC-eEEEEeCCCCc
Q 045675          266 ALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFR---DSKII-MKSVD-QFFLFNPKTKR  334 (382)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~---~g~l~-l~~~~-~~~~yd~~t~~  334 (382)
                      .++...        ...+.+|.++..   ..........-...+.+..   ++..+ ....+ .+..||+++++
T Consensus       183 l~~~~~--------d~~i~i~d~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          183 VCAGYD--------NGDIKLFDLRNM---ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEET--------TSEEEEEETTTT---EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             EEEEcc--------CCeEEEEECccC---ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            666554        678999988776   2222222223344455554   55544 44434 78888876643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=84.05  E-value=21  Score=31.11  Aligned_cols=186  Identities=12%  Similarity=0.041  Sum_probs=88.3

Q ss_pred             ceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCC
Q 045675          120 GMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~  198 (382)
                      ...+.|||..+++... +.....          ....+.+.+.. .+-+.+.      .+..+.+|+..++.-...-...
T Consensus        53 dg~i~vwd~~~~~~~~~~~~h~~----------~v~~~~~~~~~-~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~  115 (369)
T 3zwl_B           53 DSSASVWYSLNGERLGTLDGHTG----------TIWSIDVDCFT-KYCVTGS------ADYSIKLWDVSNGQCVATWKSP  115 (369)
T ss_dssp             SSCEEEEETTTCCEEEEECCCSS----------CEEEEEECTTS-SEEEEEE------TTTEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEeCCCchhhhhhhhcCC----------cEEEEEEcCCC-CEEEEEe------CCCeEEEEECCCCcEEEEeecC
Confidence            4578999988876543 322111          23356666643 3333221      2357999998876543221111


Q ss_pred             CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCcee----e--------EeCCCCCCCCCeeeEEE-eCCeE
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELF----W--------RTAMPELPTDCYVKALS-YDQSL  265 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~----~--------~i~~P~~~~~~~~~l~~-~~g~L  265 (382)
                      .....    -...-+|.....+.... ......|..+|+.+..-    .        .+...... .....+.. -+|.+
T Consensus       116 ~~v~~----~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  189 (369)
T 3zwl_B          116 VPVKR----VEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL-DAATVAGWSTKGKY  189 (369)
T ss_dssp             SCEEE----EEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC-CCEEEEEECGGGCE
T ss_pred             CCeEE----EEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCc-cceeEEEEcCCCCE
Confidence            10000    11112344444333210 00113666777654321    1        11110000 01122222 25555


Q ss_pred             EEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec-CCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCcEEEE
Q 045675          266 ALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF-ERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~-~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~~~v  338 (382)
                      .++...        ...+.+|.+...  ...+..+.. ..-...+.+..++..++.. .+ .+.+||+++++....
T Consensus       190 l~~~~~--------dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          190 IIAGHK--------DGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             EEEEET--------TSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEcC--------CCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence            555443        678999998774  233444432 2224445555677754444 44 899999998775543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=83.99  E-value=25  Score=32.06  Aligned_cols=55  Identities=7%  Similarity=0.039  Sum_probs=29.0

Q ss_pred             CCeEEEEEECCCCCeeEEEEee---cCCcccceEEeeCCcEEEEEcC-eEEEEeCCCCcEEE
Q 045675          280 SNRFELWVMNEGKGWTRTFNTA---FERIAWPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFI  337 (382)
Q Consensus       280 ~~~~~iW~l~~~~~W~~~~~i~---~~~~~~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~  337 (382)
                      ...+.||.....   ..+..+.   ...+.....+..+|.++....+ .+.++|+++++.++
T Consensus       377 ~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~rK  435 (435)
T 4e54_B          377 LRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTRK  435 (435)
T ss_dssp             CCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC------
T ss_pred             CCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeeeC
Confidence            356889976655   2233331   1122223345667886655545 89999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=83.91  E-value=24  Score=31.69  Aligned_cols=184  Identities=9%  Similarity=-0.011  Sum_probs=94.4

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCe-eeecCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKW-KEVAAGT  198 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W-~~~~~~~  198 (382)
                      ...+.|||..+++....-.....         ....+.+.|... +-+.+ .     .+..+.+|+..++.= +......
T Consensus       118 dg~i~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~~-~l~s~-s-----~d~~i~iwd~~~~~~~~~~~~h~  181 (420)
T 3vl1_A          118 EGDIKVLDSNFNLQREIDQAHVS---------EITKLKFFPSGE-ALISS-S-----QDMQLKIWSVKDGSNPRTLIGHR  181 (420)
T ss_dssp             TSCEEEECTTSCEEEEETTSSSS---------CEEEEEECTTSS-EEEEE-E-----TTSEEEEEETTTCCCCEEEECCS
T ss_pred             CCCEEEEeCCCcceeeecccccC---------ccEEEEECCCCC-EEEEE-e-----CCCeEEEEeCCCCcCceEEcCCC
Confidence            45899999988876654322111         234677777533 33222 1     335899999886531 1111110


Q ss_pred             CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeE-eCCCCCCCCCeeeEEE-----------------
Q 045675          199 GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAMPELPTDCYVKALS-----------------  260 (382)
Q Consensus       199 ~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~P~~~~~~~~~l~~-----------------  260 (382)
                      .. ..   .-...-+|.....+..+      ..|..+|+.+.+... +..+.........+..                 
T Consensus       182 ~~-v~---~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          182 AT-VT---DIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             SC-EE---EEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             Cc-EE---EEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            10 00   01112245544444433      368888988765433 3332211111111111                 


Q ss_pred             -----eCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeec--CCcccceEEeeCCc-EEEEE-cC-eEEEEeC
Q 045675          261 -----YDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAF--ERIAWPVGSFRDSK-IIMKS-VD-QFFLFNP  330 (382)
Q Consensus       261 -----~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~--~~~~~~~~~~~~g~-l~l~~-~~-~~~~yd~  330 (382)
                           -+|.+.++...        ...+.+|.+...   .....+..  ......+.+..++. +++.. .+ .+.+||+
T Consensus       252 ~~~~s~~~~~l~~~~~--------dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGHV--------SGVITVHNVFSK---EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             TTCSSCTTEEEEEEET--------TSCEEEEETTTC---CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             ceEEcCCCCEEEEEcC--------CCeEEEEECCCC---ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence                 25666655554        667999998765   23333322  22244556666676 55444 44 8999999


Q ss_pred             CCCc--EEEEee
Q 045675          331 KTKR--NFILPI  340 (382)
Q Consensus       331 ~t~~--~~~v~~  340 (382)
                      ++++  ...+..
T Consensus       321 ~~~~~~~~~~~~  332 (420)
T 3vl1_A          321 RSPECPVGEFLI  332 (420)
T ss_dssp             TCTTSCSEEEEE
T ss_pred             CCCcCchhhhhc
Confidence            9864  344443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=83.26  E-value=24  Score=31.26  Aligned_cols=106  Identities=6%  Similarity=-0.112  Sum_probs=53.3

Q ss_pred             CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCC----CCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEE
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPT----DCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVM  288 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~----~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l  288 (382)
                      +|.....+..+      ..|..+|+.+.+-..........    ..........+...++...        ...+.+|.+
T Consensus       256 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~v~d~  321 (408)
T 4a11_B          256 DGLHLLTVGTD------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--------GSTIAVYTV  321 (408)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--------TTEEEEEET
T ss_pred             CCCEEEEecCC------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec--------CCEEEEEEC
Confidence            45544444433      47889999876543321111100    0111122222233333333        468888888


Q ss_pred             CCCCCeeEEEEeec-CCcccceEEeeCCcEEEEE-cC-eEEEEeCCCCcE
Q 045675          289 NEGKGWTRTFNTAF-ERIAWPVGSFRDSKIIMKS-VD-QFFLFNPKTKRN  335 (382)
Q Consensus       289 ~~~~~W~~~~~i~~-~~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t~~~  335 (382)
                      ...   ..+..+.. ...+..+.+..++.+++.. .+ .+.+||+++.+.
T Consensus       322 ~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          322 YSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             TTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             cCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            765   33444421 2224456666777755544 34 899999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=83.04  E-value=22  Score=30.65  Aligned_cols=202  Identities=13%  Similarity=0.068  Sum_probs=99.0

Q ss_pred             EEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCC
Q 045675          111 LCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGK  190 (382)
Q Consensus       111 l~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~  190 (382)
                      |+..+..  ...++.++| +++...+.....          ...++.+|+...   ++....    ....+.+|+.. ++
T Consensus        59 l~~~d~~--~~~i~~~~~-~g~~~~~~~~~~----------~~~gl~~d~dG~---l~v~~~----~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           59 LVWSDLV--GRRVLGWRE-DGTVDVLLDATA----------FTNGNAVDAQQR---LVHCEH----GRRAITRSDAD-GQ  117 (305)
T ss_dssp             EEEEETT--TTEEEEEET-TSCEEEEEESCS----------CEEEEEECTTSC---EEEEET----TTTEEEEECTT-SC
T ss_pred             EEEEECC--CCEEEEEeC-CCCEEEEeCCCC----------ccceeeECCCCC---EEEEEC----CCCEEEEECCC-CC
Confidence            4444432  457888888 565444332221          134677777543   222111    12356677765 55


Q ss_pred             eeeecCC-CCeeEEeCCcc-eEEECceEEEEeecccc-----------cccccEEEEEECCCceeeEeCCCCCCCCCeee
Q 045675          191 WKEVAAG-TGSCVIYGGQD-AVAVKGVLHWIANGIGV-----------LVNEKFVVSYDMNLELFWRTAMPELPTDCYVK  257 (382)
Q Consensus       191 W~~~~~~-~~~~~~~~~~~-~v~~~G~lywl~~~~~~-----------~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~  257 (382)
                      .+..... ...... ..+. .+.-+|.+|+.......           ......|..+|+.+.++..+. ...   ..-.
T Consensus       118 ~~~~~~~~~~~~~~-~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~---~p~g  192 (305)
T 3dr2_A          118 AHLLVGRYAGKRLN-SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD---HPNG  192 (305)
T ss_dssp             EEEEECEETTEECS-CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES---SEEE
T ss_pred             EEEEEeccCCCccC-CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC---CCcc
Confidence            5443322 111110 0112 22236887764210000           001258999999888777654 111   1223


Q ss_pred             EEE-eCCe-EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEe-ec-CCcccceEEeeCCcEEEEEcCeEEEEeCCCC
Q 045675          258 ALS-YDQS-LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNT-AF-ERIAWPVGSFRDSKIIMKSVDQFFLFNPKTK  333 (382)
Q Consensus       258 l~~-~~g~-L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i-~~-~~~~~~~~~~~~g~l~l~~~~~~~~yd~~t~  333 (382)
                      ++. -+|+ |+++...  .. ......+.+|.++.. +......+ .. .....-+.+..+|.|++...+.+.+||++.+
T Consensus       193 l~~spdg~~lyv~~~~--~~-~~~~~~i~~~~~~~~-~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~~g~  268 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTP--EQ-GHGSVEITAFAWRDG-ALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDSDGQ  268 (305)
T ss_dssp             EEECTTSSEEEEEECC--C----CCCEEEEEEEETT-EEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECTTSC
T ss_pred             eEEcCCCCEEEEEecC--Cc-CCCCCEEEEEEecCC-CccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECCCCC
Confidence            333 3565 6665543  10 001245666666554 32211111 11 1123345666678888877679999999888


Q ss_pred             cEEEEeeeC
Q 045675          334 RNFILPIDS  342 (382)
Q Consensus       334 ~~~~v~~~~  342 (382)
                      ....+....
T Consensus       269 ~~~~~~~~~  277 (305)
T 3dr2_A          269 LLGHIPTPG  277 (305)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            777776543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=83.02  E-value=28  Score=31.78  Aligned_cols=180  Identities=9%  Similarity=-0.025  Sum_probs=88.7

Q ss_pred             eEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC----CeeeecCC
Q 045675          122 AFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG----KWKEVAAG  197 (382)
Q Consensus       122 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~----~W~~~~~~  197 (382)
                      .+...++.++++..+-+...          ...++.+|+..+...+.-+      ....+..++..+.    ....+...
T Consensus        93 ~I~~i~l~~~~~~~~~~~~~----------~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~~  156 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIPNLR----------NVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISR  156 (400)
T ss_dssp             EEEEECTTSCSCEEEECSCS----------CEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEECS
T ss_pred             eeEEEccCCcceeEeccccC----------cceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEeC
Confidence            55666666555444321111          2457888876654333221      2235666666542    12222111


Q ss_pred             CCeeEEeCCcceEE-ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE--eCCeEEEEEecCCC
Q 045675          198 TGSCVIYGGQDAVA-VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS--YDQSLALAVYPGLG  274 (382)
Q Consensus       198 ~~~~~~~~~~~~v~-~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~--~~g~L~~~~~~~~~  274 (382)
                      ....+.   .-++- .+|.|||.....      ..|.++|+.......+.. ... .....+++  .+|.|++....   
T Consensus       157 ~~~~p~---glavD~~~~~lY~~d~~~------~~I~~~~~~g~~~~~l~~-~~~-~~P~~iavdp~~g~ly~td~~---  222 (400)
T 3p5b_L          157 DIQAPD---GLAVDWIHSNIYWTDSVL------GTVSVADTKGVKRKTLFR-ENG-SKPRAIVVDPVHGFMYWTDWG---  222 (400)
T ss_dssp             SCSCEE---EEEEETTTTEEEEEETTT------TEEEEECTTTCSEEEEEE-CSS-CCEEEEEEETTTTEEEEEECS---
T ss_pred             CCCCcc---cEEEEecCCceEEEECCC------CeEEEEeCCCCceEEEEe-CCC-CCcceEEEecccCeEEEEeCC---
Confidence            001111   11222 378999987654      489999998765544421 111 12344555  36888877653   


Q ss_pred             ccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEE--e-eCCcEEEEEcC--eEEEEeCCCCcEEEEe
Q 045675          275 FRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGS--F-RDSKIIMKSVD--QFFLFNPKTKRNFILP  339 (382)
Q Consensus       275 ~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~--~-~~g~l~l~~~~--~~~~yd~~t~~~~~v~  339 (382)
                          ....+....++..  -.+  .+-...+..|-++  . .++.||+....  .+..+|++....+.+.
T Consensus       223 ----~~~~I~~~~~dG~--~~~--~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~  284 (400)
T 3p5b_L          223 ----TPAKIKKGGLNGV--DIY--SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  284 (400)
T ss_dssp             ----SSCCEEEEETTSC--SCE--EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred             ----CCCEEEEEeCCCC--ccE--EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence                1234444334332  111  1211334455444  3 24457777654  8999999876655553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=82.80  E-value=26  Score=31.24  Aligned_cols=95  Identities=14%  Similarity=0.062  Sum_probs=51.2

Q ss_pred             cEEEEEECCCceeeEe-CCCCCCCCCeeeEEEe-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEee-cCCcc
Q 045675          230 KFVVSYDMNLELFWRT-AMPELPTDCYVKALSY-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTA-FERIA  306 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~-~~~~~  306 (382)
                      ..|..+|+.+.+.... .....   ....+... +|.+.++...        ...+.+|.+... .  .+..+. .....
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~-~--~~~~~~~~~~~i  292 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHG---PISVLEFNDTNKLLLSASD--------DGTLRIWHGGNG-N--SQNCFYGHSQSI  292 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSS---CEEEEEEETTTTEEEEEET--------TSCEEEECSSSB-S--CSEEECCCSSCE
T ss_pred             CeEEEEEcCCCceeeeeccCCC---ceEEEEECCCCCEEEEEcC--------CCEEEEEECCCC-c--cceEecCCCccE
Confidence            4789999987644332 21111   22333333 5665555543        668899987764 2  122221 11223


Q ss_pred             cceEEeeCCcEEEEEcC-eEEEEeCCCCcEEEE
Q 045675          307 WPVGSFRDSKIIMKSVD-QFFLFNPKTKRNFIL  338 (382)
Q Consensus       307 ~~~~~~~~g~l~l~~~~-~~~~yd~~t~~~~~v  338 (382)
                      .-+.+..++.++....+ .+.+||+++++....
T Consensus       293 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          293 VSASWVGDDKVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             EEEEEETTTEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCcEEEEECCCCcEeEe
Confidence            44555556633344444 899999988765443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=82.65  E-value=20  Score=29.90  Aligned_cols=199  Identities=11%  Similarity=-0.041  Sum_probs=97.9

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccc-cceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPAT-NEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T-~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      +-+|-.++...   ...++++|..+ ++...+.......        ....+.+.|.. .+-++ ... .......+.++
T Consensus        50 spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~spdg-~~l~~-~~~-~~~~~~~l~~~  115 (297)
T 2ojh_A           50 SPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATI--------CNNDHGISPDG-ALYAI-SDK-VEFGKSAIYLL  115 (297)
T ss_dssp             CTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCC--------BCSCCEECTTS-SEEEE-EEC-TTTSSCEEEEE
T ss_pred             CCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccc--------cccceEECCCC-CEEEE-EEe-CCCCcceEEEE
Confidence            33554433333   34899999999 8777665433211        01134455543 22222 221 11233467777


Q ss_pred             ECCCCCeeeecCCCCeeEEeCCcceEEECce-EEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eC
Q 045675          185 STSTGKWKEVAAGTGSCVIYGGQDAVAVKGV-LHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YD  262 (382)
Q Consensus       185 ss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~  262 (382)
                      +..++.-+.+.....  ..   .....-+|. +++....+    ....|..+|..+.....+.....   ....+.. -+
T Consensus       116 ~~~~~~~~~~~~~~~--~~---~~~~spdg~~l~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~s~d  183 (297)
T 2ojh_A          116 PSTGGTPRLMTKNLP--SY---WHGWSPDGKSFTYCGIRD----QVFDIYSMDIDSGVETRLTHGEG---RNDGPDYSPD  183 (297)
T ss_dssp             ETTCCCCEECCSSSS--EE---EEEECTTSSEEEEEEEET----TEEEEEEEETTTCCEEECCCSSS---CEEEEEECTT
T ss_pred             ECCCCceEEeecCCC--cc---ceEECCCCCEEEEEECCC----CceEEEEEECCCCcceEcccCCC---ccccceECCC
Confidence            777665444433321  11   011222454 44344333    13467777787766655432221   1223332 36


Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCC-cccceEEeeCCc-EEEEEc------------CeEEEE
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFER-IAWPVGSFRDSK-IIMKSV------------DQFFLF  328 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~-~~~~~~~~~~g~-l~l~~~------------~~~~~y  328 (382)
                      |+..++...       ....+.||.++...+  ....+.... ....+.+..+|+ |++...            ..++.|
T Consensus       184 g~~l~~~~~-------~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          184 GRWIYFNSS-------RTGQMQIWRVRVDGS--SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             SSEEEEEEC-------TTSSCEEEEEETTSS--CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             CCEEEEEec-------CCCCccEEEECCCCC--CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            665444443       145788999874312  122221111 133345556776 444433            259999


Q ss_pred             eCCCCcEEEEe
Q 045675          329 NPKTKRNFILP  339 (382)
Q Consensus       329 d~~t~~~~~v~  339 (382)
                      |+++++.+.+.
T Consensus       255 d~~~~~~~~~~  265 (297)
T 2ojh_A          255 DMDGGNVETLF  265 (297)
T ss_dssp             ETTSCSCEEEE
T ss_pred             ecCCCCceeee
Confidence            99998876653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=82.23  E-value=43  Score=33.45  Aligned_cols=184  Identities=11%  Similarity=-0.017  Sum_probs=97.2

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCC-C
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGT-G  199 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~-~  199 (382)
                      ..++.+||.|+++..++......    .   ....+..|...  -  +.+..    . ..+..|+..++.|+...... .
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~----~---~v~~i~~d~~g--~--lwigt----~-~Gl~~~~~~~~~~~~~~~~~~~  490 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNEL----L---DVRVFYEDKNK--K--IWIGT----H-AGVFVIDLASKKVIHHYDTSNS  490 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCC----C---CEEEEEECTTS--E--EEEEE----T-TEEEEEESSSSSCCEEECTTTS
T ss_pred             CCEEEEcCCCCcEEEeccCCCCC----C---eEEEEEECCCC--C--EEEEE----C-CceEEEeCCCCeEEecccCccc
Confidence            46778888888877665431110    1   12234444322  1  11111    1 36888999888887654321 0


Q ss_pred             eeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCC-CeeeEEE-eCCeEEEEEecCCCc
Q 045675          200 SCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTD-CYVKALS-YDQSLALAVYPGLGF  275 (382)
Q Consensus       200 ~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~-~~~~l~~-~~g~L~~~~~~~~~~  275 (382)
                      .... ..-.++..  +|. .|++..+      ..+..||..++++..+..+..... ....+.+ .+|.|.+....    
T Consensus       491 ~~~~-~~i~~i~~d~~g~-lWigt~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~----  558 (781)
T 3v9f_A          491 QLLE-NFVRSIAQDSEGR-FWIGTFG------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGE----  558 (781)
T ss_dssp             SCSC-SCEEEEEECTTCC-EEEEESS------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETT----
T ss_pred             cccc-ceeEEEEEcCCCC-EEEEEcC------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECC----
Confidence            0000 00123333  355 5666653      268899999999988754433211 2334444 36777765543    


Q ss_pred             cCCCCCeEEE-EEECCCCC-eeEEEEe-ecCC-cccceEEeeCCcEEEEEcCeEEEEeCCCCcEEEEee
Q 045675          276 RSRLSNRFEL-WVMNEGKG-WTRTFNT-AFER-IAWPVGSFRDSKIIMKSVDQFFLFNPKTKRNFILPI  340 (382)
Q Consensus       276 ~~~~~~~~~i-W~l~~~~~-W~~~~~i-~~~~-~~~~~~~~~~g~l~l~~~~~~~~yd~~t~~~~~v~~  340 (382)
                              -+ ..++...+ +.....- .+.. .+..+....+|.|++...+.+..||+++++++....
T Consensus       559 --------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~Gl~~~~~~~~~~~~~~~  619 (781)
T 3v9f_A          559 --------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFYTYDH  619 (781)
T ss_dssp             --------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSCEEEEETTTTEEEEECG
T ss_pred             --------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCceEEEECCCCceEEecc
Confidence                    12 33333212 3221110 0111 133344445677999988899999999998887743

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=81.84  E-value=26  Score=30.64  Aligned_cols=180  Identities=12%  Similarity=0.067  Sum_probs=89.7

Q ss_pred             ceeEEEEcccccce---eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecC
Q 045675          120 GMAFVLWNPATNEF---KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAA  196 (382)
Q Consensus       120 ~~~~~V~NP~T~~~---~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~  196 (382)
                      ...+.|||..++++   ..+.....          ....+.+.+. +.+-+.+.      .+..+.+|+..++.+.....
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~----------~v~~~~~~~~-~~~l~~~~------~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNG----------QVTGVDWAPD-SNRIVTCG------TDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSS----------CEEEEEEETT-TTEEEEEE------TTSCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCC----------cccEEEEeCC-CCEEEEEc------CCCeEEEEECCCCeeeeeEE
Confidence            45889999988853   33332221          2335667774 34433322      23478889888887654432


Q ss_pred             CC-CeeEEeCCcceEE--ECceEEEEeecccccccccEEEEEECCCce----eeEeCCCCCCCCCeeeEEEe-CCeEEEE
Q 045675          197 GT-GSCVIYGGQDAVA--VKGVLHWIANGIGVLVNEKFVVSYDMNLEL----FWRTAMPELPTDCYVKALSY-DQSLALA  268 (382)
Q Consensus       197 ~~-~~~~~~~~~~~v~--~~G~lywl~~~~~~~~~~~~i~~fD~~~~~----~~~i~~P~~~~~~~~~l~~~-~g~L~~~  268 (382)
                      .. .....    ..+.  -+|.....+..+      ..|..+|+.+..    ...+..+...  ....+... +|.+.+.
T Consensus        92 ~~~~~~~v----~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~  159 (372)
T 1k8k_C           92 ILRINRAA----RCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLLAA  159 (372)
T ss_dssp             CCCCSSCE----EEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEEEE
T ss_pred             eecCCCce----eEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCC--CeeEEEEcCCCCEEEE
Confidence            21 11111    1121  245555544433      356666665543    2222222221  23333332 5665555


Q ss_pred             EecCCCccCCCCCeEEEEEECCCC-------C-e-------eEEEEeec-CCcccceEEeeCCcEEE-EEcC-eEEEEeC
Q 045675          269 VYPGLGFRSRLSNRFELWVMNEGK-------G-W-------TRTFNTAF-ERIAWPVGSFRDSKIIM-KSVD-QFFLFNP  330 (382)
Q Consensus       269 ~~~~~~~~~~~~~~~~iW~l~~~~-------~-W-------~~~~~i~~-~~~~~~~~~~~~g~l~l-~~~~-~~~~yd~  330 (382)
                      ...        ...+.+|.+....       . |       ..+..+.. ......+.+..++..++ ...+ .+.+||+
T Consensus       160 ~~~--------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          160 GSC--------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EET--------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EcC--------CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            554        6788999864210       0 2       22333321 11234455556676444 4444 8999999


Q ss_pred             CCCcEE
Q 045675          331 KTKRNF  336 (382)
Q Consensus       331 ~t~~~~  336 (382)
                      ++++..
T Consensus       232 ~~~~~~  237 (372)
T 1k8k_C          232 DKKMAV  237 (372)
T ss_dssp             GGTTEE
T ss_pred             CCCcee
Confidence            877644

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=81.51  E-value=38  Score=32.32  Aligned_cols=110  Identities=8%  Similarity=-0.042  Sum_probs=66.6

Q ss_pred             CceEEEEeecccccccccEEEEEECCCceeeE-eCC---CCCCCCCeeeEEEeC-CeEEEEEecCCCccCCCCCeEEEEE
Q 045675          213 KGVLHWIANGIGVLVNEKFVVSYDMNLELFWR-TAM---PELPTDCYVKALSYD-QSLALAVYPGLGFRSRLSNRFELWV  287 (382)
Q Consensus       213 ~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~-i~~---P~~~~~~~~~l~~~~-g~L~~~~~~~~~~~~~~~~~~~iW~  287 (382)
                      +|...+.+...     ...|.++|..+.+... ++.   |...  ....+..-+ |.+++....       ....+.||-
T Consensus       334 dg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g--~g~~~~~p~~g~~~~s~~~-------~d~~V~v~d  399 (543)
T 1nir_A          334 SHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHL-------GDGSISLIG  399 (543)
T ss_dssp             TSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCT--TCEEEEETTTEEEEEEEBS-------SSSEEEEEE
T ss_pred             CCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCC--CCcccCCCCCccEEEeccC-------CCceEEEEE
Confidence            57654444433     2478889999876644 332   3221  122333334 666555443       267899999


Q ss_pred             ECCCCC----eeEEEEeecCCc-ccceEEeeCCcEEEEEc---------CeEEEEeCCCCcEE
Q 045675          288 MNEGKG----WTRTFNTAFERI-AWPVGSFRDSKIIMKSV---------DQFFLFNPKTKRNF  336 (382)
Q Consensus       288 l~~~~~----W~~~~~i~~~~~-~~~~~~~~~g~l~l~~~---------~~~~~yd~~t~~~~  336 (382)
                      .+....    |..+.+++...- ...+.++.+|..+.+..         +.+.+||.++.+..
T Consensus       400 ~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          400 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             eCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            986322    999999976432 33466677777444432         38999999988743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=81.36  E-value=42  Score=32.73  Aligned_cols=188  Identities=14%  Similarity=-0.010  Sum_probs=96.2

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccccce--eccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPATNEF--KGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~--~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      ...+|.|+..+..  ...+..+++.....  ..+.. ...         .-.|+++|..++...+.-      .....++
T Consensus        48 ~~~~~~ly~sD~~--~~~I~r~~~~g~~~~~~v~~~-~~~---------~P~GlAvD~~~~~ly~~d------~~~~~I~  109 (619)
T 3s94_A           48 VFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVS-GLL---------SPDGLACDWLGEKLYWTD------SETNRIE  109 (619)
T ss_dssp             ETTTTEEEEEETT--TTEEEEEEC-----CEEEECS-SCS---------CEEEEEEETTTTEEEEEE------TTTTEEE
T ss_pred             EeCCCEEEEEECC--CCeEEEEEccCCCceEEEEeC-CCC---------CcCeEEEEecCCEEEEEe------CCCCEEE
Confidence            4457888887764  45677778765421  22222 111         234788888665433321      1335788


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEE---CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAV---KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL  259 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~---~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~  259 (382)
                      +++..+..=+.+....  .   ....++.+   +|.|||.....     ...|..+++....-..+-... . .....|+
T Consensus       110 v~~~dG~~~~~l~~~~--l---~~P~~Iavdp~~g~ly~tD~g~-----~~~I~r~~~dG~~~~~l~~~~-~-~~P~Gla  177 (619)
T 3s94_A          110 VSNLDGSLRKVLFWQE--L---DQPRAIALDPSSGFMYWTDWGE-----VPKIERAGMDGSSRFIIINSE-I-YWPNGLT  177 (619)
T ss_dssp             EEETTSCSCEEEECSS--C---SCCCCEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECSS-C-SSEEEEE
T ss_pred             EEECCCCCEEEEEeCC--C---CCCceEEEecCCCeEEEeccCC-----CCEEEEEECCCCceEEEEeCC-C-CCCcEEE
Confidence            8887654322222110  0   11234444   68999987543     248999999765444432111 1 1334455


Q ss_pred             Ee--CCeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeCCCC
Q 045675          260 SY--DQSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNPKTK  333 (382)
Q Consensus       260 ~~--~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~~t~  333 (382)
                      ..  +++||++...        ..  .||..+-. | -.+.  +-...+..|.++.-.++ ||+....  .+...|..++
T Consensus       178 ld~~~~~LY~aD~~--------~~--~I~~~~~d-G~~~~~--~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          178 LDYEEQKLYWADAK--------LN--FIHKSNLD-GTNRQA--VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             EETTTTEEEEEETT--------TC--CEEEESSS-CCEEC-----------CCCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             EEccCCEEEEEeCC--------CC--eEEEecCC-CCccEE--EEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence            54  7899998765        33  45666543 3 1111  11112345555543344 5555433  8999999887


Q ss_pred             cE
Q 045675          334 RN  335 (382)
Q Consensus       334 ~~  335 (382)
                      +.
T Consensus       245 ~~  246 (619)
T 3s94_A          245 EG  246 (619)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=81.30  E-value=26  Score=30.39  Aligned_cols=62  Identities=11%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             CeEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEEEEeecC---CcccceEEeeCCcEEEEE-cC-eEEEEeCCC
Q 045675          263 QSLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRTFNTAFE---RIAWPVGSFRDSKIIMKS-VD-QFFLFNPKT  332 (382)
Q Consensus       263 g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~~~i~~~---~~~~~~~~~~~g~l~l~~-~~-~~~~yd~~t  332 (382)
                      |++.++...        ...+.+|.++.... ......+...   ....-+.+..++..++.. .+ .+.+||+.+
T Consensus       299 ~~~l~~~~~--------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          299 QKMLALGNQ--------VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SSEEEEECT--------TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEec--------CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            666655554        67899999987632 3344455432   224455666677755444 44 899999864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=81.13  E-value=31  Score=31.08  Aligned_cols=55  Identities=4%  Similarity=-0.089  Sum_probs=39.3

Q ss_pred             EEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEc---CeEEEEeCCCCcEEEE
Q 045675          283 FELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSV---DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       283 ~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~---~~~~~yd~~t~~~~~v  338 (382)
                      =+||+++-. ....+.+|++......+.+..+|+ +++...   +.+.+||.++++....
T Consensus       298 ~~V~VID~~-t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          298 KEVTSVTGL-VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEEEECC-CCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            367777764 457778887766555667777887 665554   2899999999886654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=81.03  E-value=43  Score=32.69  Aligned_cols=192  Identities=15%  Similarity=0.053  Sum_probs=95.3

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC-CeeeecCC-
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG-KWKEVAAG-  197 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~-~W~~~~~~-  197 (382)
                      ...++++|..+++...+......     ..  ....+.+.|.++ +-++.... .......+.+++..++ ..+.+... 
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~-----~~--~~~~~~~spdg~-~l~~~~~~-~~~~~~~v~~~d~~~g~~~~~~~~~~  304 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPK-----EK--FLTNLSWSPDEN-ILYVAEVN-RAQNECKVNAYDAETGRFVRTLFVET  304 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCT-----TC--EEEEEEECTTSS-EEEEEEEC-TTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             eeEEEEEECCCCceEeeccCCCC-----ce--eEeeEEEECCCC-EEEEEEeC-CCCCeeEEEEEECCCCceeeEEEEcc
Confidence            45799999999987665432211     11  233566666543 33332221 1122347888888887 66554321 


Q ss_pred             CCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeee-EEE-eCCe-EEEEEecC
Q 045675          198 TGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVK-ALS-YDQS-LALAVYPG  272 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~-l~~-~~g~-L~~~~~~~  272 (382)
                      ..............-  +|.+.+....+    ....|..+|..++....+.....   .... +.. -+|+ |++.... 
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~----g~~~l~~~~~~~~~~~~l~~~~~---~v~~~~~~spdg~~l~~~~~~-  376 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRD----GWNHLYLYDTTGRLIRQVTKGEW---EVTNFAGFDPKGTRLYFESTE-  376 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTT----SSCEEEEEETTSCEEEECCCSSS---CEEEEEEECTTSSEEEEEESS-
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccC----CccEEEEEECCCCEEEecCCCCe---EEEeeeEEcCCCCEEEEEecC-
Confidence            110000000112223  78877766554    23578888877776666532211   1222 232 2554 5444443 


Q ss_pred             CCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC-----eEEEEeCCCCcE
Q 045675          273 LGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD-----QFFLFNPKTKRN  335 (382)
Q Consensus       273 ~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~-----~~~~yd~~t~~~  335 (382)
                       .    ......||.++-..+ . ...+....-...+.+..+|. |++...+     .++.+|+++++.
T Consensus       377 -~----~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~  438 (706)
T 2z3z_A          377 -A----SPLERHFYCIDIKGG-K-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSH  438 (706)
T ss_dssp             -S----CTTCBEEEEEETTCC-C-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEE
T ss_pred             -C----CCceEEEEEEEcCCC-C-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeE
Confidence             1    223567777654322 1 12222111133455566776 4444332     588999988873

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=80.92  E-value=27  Score=30.31  Aligned_cols=138  Identities=14%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             eeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCC---CeeeecCC
Q 045675          121 MAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTG---KWKEVAAG  197 (382)
Q Consensus       121 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~---~W~~~~~~  197 (382)
                      ..++.+||.+++...+.....          ...++.+++..+ +-.|.  ..   ....+.+|+..+.   ..+.....
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~----------~p~gia~~~dg~-~lyv~--d~---~~~~I~~~~~~~~~~~~~~~~~~~  228 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELH----------VPGGAEVSADSS-FVLVA--EF---LSHQIVKYWLEGPKKGTAEVLVKI  228 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEES----------CCCEEEECTTSS-EEEEE--EG---GGTEEEEEESSSTTTTCEEEEEEC
T ss_pred             ceEEEEeCCCCEEEEeccCCc----------cCcceEECCCCC-EEEEE--eC---CCCeEEEEECCCCcCCccceEEeC
Confidence            467888888776544321100          122566666433 22121  10   2247788887653   33332211


Q ss_pred             CCeeEEeCCcceEEE--CceEEEEeeccccc-----ccccEEEEEECCCceeeEeCCCCCCC-CCeeeEEEeCCeEEEEE
Q 045675          198 TGSCVIYGGQDAVAV--KGVLHWIANGIGVL-----VNEKFVVSYDMNLELFWRTAMPELPT-DCYVKALSYDQSLALAV  269 (382)
Q Consensus       198 ~~~~~~~~~~~~v~~--~G~lywl~~~~~~~-----~~~~~i~~fD~~~~~~~~i~~P~~~~-~~~~~l~~~~g~L~~~~  269 (382)
                      +.  +     .++.+  +|.+ |++......     .....|..||...+....+..|.... .....+...+|.|++..
T Consensus       229 ~g--P-----~gi~~d~~G~l-~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~  300 (322)
T 2fp8_A          229 PN--P-----GNIKRNADGHF-WVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGT  300 (322)
T ss_dssp             SS--E-----EEEEECTTSCE-EEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEEC
T ss_pred             CC--C-----CCeEECCCCCE-EEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEee
Confidence            11  1     23333  5775 444422000     01247999999888778887775321 12233445688998876


Q ss_pred             ecCCCccCCCCCeEEEEEECC
Q 045675          270 YPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       270 ~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      ..        ...+.++.++.
T Consensus       301 ~~--------~~~i~~~~~~~  313 (322)
T 2fp8_A          301 LF--------HGSVGILVYDK  313 (322)
T ss_dssp             SS--------CSEEEEEEC--
T ss_pred             cC--------CCceEEEeccc
Confidence            54        55666666553

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=80.77  E-value=30  Score=30.74  Aligned_cols=185  Identities=6%  Similarity=-0.005  Sum_probs=91.1

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEEC
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYST  186 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss  186 (382)
                      -+|.++....   ...+.+||..+++....-.....         ....+.+.+... +-+++.      .+..+.+|+.
T Consensus       216 ~~~~~~~~~~---~g~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~-~l~~~~------~d~~i~i~d~  276 (425)
T 1r5m_A          216 DDDKFVIPGP---KGAIFVYQITEKTPTGKLIGHHG---------PISVLEFNDTNK-LLLSAS------DDGTLRIWHG  276 (425)
T ss_dssp             ETTEEEEECG---GGCEEEEETTCSSCSEEECCCSS---------CEEEEEEETTTT-EEEEEE------TTSCEEEECS
T ss_pred             CCCEEEEEcC---CCeEEEEEcCCCceeeeeccCCC---------ceEEEEECCCCC-EEEEEc------CCCEEEEEEC
Confidence            3566655544   45899999888754332111111         233566776543 333221      2346888887


Q ss_pred             CCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE-eCCe
Q 045675          187 STGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS-YDQS  264 (382)
Q Consensus       187 ~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~-~~g~  264 (382)
                      .++.-...-........   .-...-+| ....+..      ...|..+|+.+.+.... .....   ....+.. .+|.
T Consensus       277 ~~~~~~~~~~~~~~~i~---~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~---~i~~~~~s~~~~  343 (425)
T 1r5m_A          277 GNGNSQNCFYGHSQSIV---SASWVGDD-KVISCSM------DGSVRLWSLKQNTLLALSIVDGV---PIFAGRISQDGQ  343 (425)
T ss_dssp             SSBSCSEEECCCSSCEE---EEEEETTT-EEEEEET------TSEEEEEETTTTEEEEEEECTTC---CEEEEEECTTSS
T ss_pred             CCCccceEecCCCccEE---EEEECCCC-EEEEEeC------CCcEEEEECCCCcEeEecccCCc---cEEEEEEcCCCC
Confidence            76532221111110111   01122256 3333332      24899999987654333 22211   2223332 2566


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCCC-----------C------eeEEEEeecC--C-cccceEEeeCCcEE-EEEcC
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEGK-----------G------WTRTFNTAFE--R-IAWPVGSFRDSKII-MKSVD  323 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~~-----------~------W~~~~~i~~~--~-~~~~~~~~~~g~l~-l~~~~  323 (382)
                      +.++...        ...+.+|.+....           +      +..+..+...  . ....+.+..++..+ ....+
T Consensus       344 ~l~~~~~--------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          344 KYAVAFM--------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             EEEEEET--------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             EEEEEEC--------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence            5555554        5688899886432           0      1144444332  1 24445555667644 44444


Q ss_pred             -eEEEEeCC
Q 045675          324 -QFFLFNPK  331 (382)
Q Consensus       324 -~~~~yd~~  331 (382)
                       .+.+||++
T Consensus       416 g~i~iw~~~  424 (425)
T 1r5m_A          416 QEGSVVAIP  424 (425)
T ss_dssp             SCCEEEECC
T ss_pred             ceEEEEeec
Confidence             78888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 10 SSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF 48
           S+P  ++  I   L +  +++   V K W  L      
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.98
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.92
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.7
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.48
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.3
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.05
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	91.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	91.75
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	91.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	88.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.96
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	87.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	86.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	86.27
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	85.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.51
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	82.21

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1e-12  Score=78.73  Aligned_cols=40  Identities=20%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHH
Q 045675            9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEF   48 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F   48 (382)
                      +..||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4689999999999999999999999999999999998864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.9e-09  Score=89.43  Aligned_cols=223  Identities=11%  Similarity=-0.001  Sum_probs=133.9

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecC---CCCCEEEEEECCCCCeeeecC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQA---RYDAIAEVYSTSTGKWKEVAA  196 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~---~~~~~~~vyss~t~~W~~~~~  196 (382)
                      -..+.++||.|++|..+|++|..+..  +      .....  .+...|++......   .....+++|+..+++|++++.
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~--~------~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~   87 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSG--L------AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP   87 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS--C------EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC
T ss_pred             CceEEEEECCCCeEEECCCCCCccce--e------EEEEE--CCEEEEEeCcccCCCCccccchhhhccccccccccccc
Confidence            34678999999999999988764321  1      11111  23333333322111   123489999999999999988


Q ss_pred             CCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCcc
Q 045675          197 GTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFR  276 (382)
Q Consensus       197 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~  276 (382)
                      ++..+..   +.++.++|++|.+++..... .......+|+.++.|...+.+.... .....+..++.++++...  .. 
T Consensus        88 ~p~~r~~---~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~GG~--~~-  159 (288)
T d1zgka1          88 MSVPRNR---IGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVLNRLLYAVGGF--DG-  159 (288)
T ss_dssp             CSSCCBT---CEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCB--CS-
T ss_pred             ccceecc---eeccccceeeEEecceeccc-ccceeeeeccccCcccccccccccc-ccceeeeeeecceEecCc--cc-
Confidence            7655543   57888999999987654322 3456788999999998874433221 445667789999988776  21 


Q ss_pred             CCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEEEeeeCCCCCeEE
Q 045675          277 SRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFILPIDSGMGYSYK  349 (382)
Q Consensus       277 ~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~v~~~~~~~~~~~  349 (382)
                      ......+.+|-.... .|......+... ........++.|++....       ....||..+++|+.+...........
T Consensus       160 ~~~~~~~~~~d~~~~-~~~~~~~~~~~~-~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  237 (288)
T d1zgka1         160 TNRLNSAECYYPERN-EWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG  237 (288)
T ss_dssp             SCBCCCEEEEETTTT-EEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred             ccccceEEEeecccc-cccccccccccc-ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceE
Confidence            112233444433322 377654443322 222333345666665431       78999999999999864322221233


Q ss_pred             EEEEeeceeecCC
Q 045675          350 VFTYVDSIVAVNG  362 (382)
Q Consensus       350 ~~~y~~SLv~~~~  362 (382)
                      +..+...|.-+.+
T Consensus       238 ~~~~~~~l~v~GG  250 (288)
T d1zgka1         238 ITVHQGRIYVLGG  250 (288)
T ss_dssp             EEEETTEEEEECC
T ss_pred             EEEECCEEEEEec
Confidence            4444444444443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.1e-08  Score=86.15  Aligned_cols=200  Identities=13%  Similarity=0.026  Sum_probs=128.5

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.++||.|.+|..+|+++..+..  .      +....  .+...++.... ........++|+..++.|...+..+.
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~--~------~~~~~--~~~i~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNR--I------GVGVI--DGHIYAVGGSH-GCIHHNSVERYEPERDEWHLVAPMLT  137 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBT--C------EEEEE--TTEEEEECCEE-TTEECCCEEEEETTTTEEEECCCCSS
T ss_pred             cchhhhcccccccccccccccceecc--e------ecccc--ceeeEEeccee-cccccceeeeeccccCcccccccccc
Confidence            45789999999999999988765322  1      11111  12222222222 22234578999999999998877754


Q ss_pred             eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCC
Q 045675          200 SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALSYDQSLALAVYPGLGFRSRL  279 (382)
Q Consensus       200 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~  279 (382)
                      .+..   +.++..++.+|.+++..... ....+..||+.+++|.....+.... ........+++|.++...  ..   .
T Consensus       138 ~r~~---~~~~~~~~~~~~~GG~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~GG~--~~---~  207 (288)
T d1zgka1         138 RRIG---VGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGY--DG---Q  207 (288)
T ss_dssp             CCBS---CEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCB--CS---S
T ss_pred             cccc---ceeeeeeecceEecCccccc-ccceEEEeecccccccccccccccc-ccccccceeeeEEEecCc--cc---c
Confidence            4433   57778899999887654322 3457899999999999885444332 345667889999998876  21   1


Q ss_pred             CCeEEEEEECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEEEeee
Q 045675          280 SNRFELWVMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFILPID  341 (382)
Q Consensus       280 ~~~~~iW~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~v~~~  341 (382)
                      ...-..|..+.... |..+..++...... ..+.-+++|++....       .+.+||+++++|+.+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  276 (288)
T d1zgka1         208 DQLNSVERYDVETETWTFVAPMKHRRSAL-GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM  276 (288)
T ss_dssp             SBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred             ccccceeeeeecceeeecccCccCcccce-EEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCC
Confidence            22234445544323 88766555433322 333346778776531       689999999999999643

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=5.9e-09  Score=76.20  Aligned_cols=48  Identities=15%  Similarity=0.190  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHcc
Q 045675            8 TVSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLNC   55 (382)
Q Consensus         8 ~~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~~~~   55 (382)
                      .+..||+||+..||+.|++++++++++|||+|+.++.++.+-+....+
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999998876654

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.4e-08  Score=72.46  Aligned_cols=43  Identities=28%  Similarity=0.436  Sum_probs=37.4

Q ss_pred             CCCCCHHHHHHHHhcCChhhhhhhhccchhhHhhc-CCHHHHHH
Q 045675            9 VSSVPLVIITDILLQLPIKSIVRFKCVSKSWLLLI-KSSEFVTA   51 (382)
Q Consensus         9 ~~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li-~sp~F~~~   51 (382)
                      +..||+||+..||+.|+++++.++++|||+|+.++ +++..-+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            35799999999999999999999999999999998 45765443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.53  E-value=3.8e-07  Score=82.51  Aligned_cols=220  Identities=9%  Similarity=-0.011  Sum_probs=125.1

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      ...+|.+++....+ .....++||.|++|..+|.++..+..      .  +..... .+.+.|++...........+++|
T Consensus        83 ~~~~g~i~v~Gg~~-~~~~~~yd~~~~~w~~~~~~~~~r~~------~--~~~~~~-dG~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          83 MDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDMQVARGY------Q--SSATMS-DGRVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             ECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCCSSCCSS------C--EEEECT-TSCEEEECCCCCSSSCCCCEEEE
T ss_pred             EecCCcEEEeecCC-CcceeEecCccCcccccccccccccc------c--ceeeec-CCceeeeccccccccccceeeee
Confidence            34578887765432 45788999999999999988875321      1  112111 23333333322122234589999


Q ss_pred             ECCCCCeeeecCCCCe-eEEeCC--------cce--EEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCC
Q 045675          185 STSTGKWKEVAAGTGS-CVIYGG--------QDA--VAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPT  252 (382)
Q Consensus       185 ss~t~~W~~~~~~~~~-~~~~~~--------~~~--v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~  252 (382)
                      +..+++|...+..... ......        ...  +..+|.+|.....      ...+..+|..+..|... ..|....
T Consensus       153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~  226 (387)
T d1k3ia3         153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS------TAMNWYYTSGSGDVKSAGKRQSNRG  226 (387)
T ss_dssp             ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS------SEEEEEECSTTCEEEEEEECEETTE
T ss_pred             cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc------CCcEEecCcccCcEeeccccccCcc
Confidence            9999999988765211 110010        111  1125666665433      24788899999999776 3332211


Q ss_pred             -------CCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCC----eeEEEEeecCCcccceEEeeCCcEEEEE
Q 045675          253 -------DCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKG----WTRTFNTAFERIAWPVGSFRDSKIIMKS  321 (382)
Q Consensus       253 -------~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~----W~~~~~i~~~~~~~~~~~~~~g~l~l~~  321 (382)
                             .....+...+|+++++................+..+.....    |.....++.........+..+|+||+..
T Consensus       227 ~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~G  306 (387)
T d1k3ia3         227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITG  306 (387)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEEC
T ss_pred             cCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEEC
Confidence                   11222334589999888862111111233455555554422    4444444443334445555577887765


Q ss_pred             cC-------------eEEEEeCCCCcEEEEee
Q 045675          322 VD-------------QFFLFNPKTKRNFILPI  340 (382)
Q Consensus       322 ~~-------------~~~~yd~~t~~~~~v~~  340 (382)
                      ..             .+.+||+++++|+.+..
T Consensus       307 G~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~  338 (387)
T d1k3ia3         307 GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  338 (387)
T ss_dssp             CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             CcccCccCCCCcEeceEEEEECCCCeEEECCC
Confidence            41             47889999999999964

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.48  E-value=4.5e-07  Score=82.05  Aligned_cols=192  Identities=8%  Similarity=0.032  Sum_probs=114.0

Q ss_pred             cccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCC-----CCCEEEEEECCCCCeeeecCCC-Ce
Q 045675          127 NPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQAR-----YDAIAEVYSTSTGKWKEVAAGT-GS  200 (382)
Q Consensus       127 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-----~~~~~~vyss~t~~W~~~~~~~-~~  200 (382)
                      .|++++|..+++.|....          .....+..+...|++.......     ....+++|+..+++|+....+. +.
T Consensus         5 ~p~~g~W~~~~~~p~~~~----------~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~   74 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPA----------AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH   74 (387)
T ss_dssp             CTTSCEEEEEEECSSCCS----------EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC
T ss_pred             CCCCCccCCcCCCCcccc----------EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc
Confidence            488999998877665321          2233344444444433321110     1126889999999998766552 21


Q ss_pred             eEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCC
Q 045675          201 CVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPTDCYVKALS-YDQSLALAVYPGLGFRSR  278 (382)
Q Consensus       201 ~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~  278 (382)
                      ... .....+..+|++|+.++.+     ...+..||+.+++|+.+ .+|..+  .....+. .+|+++++...  .....
T Consensus        75 ~~~-~~~~~~~~~g~i~v~Gg~~-----~~~~~~yd~~~~~w~~~~~~~~~r--~~~~~~~~~dG~v~v~GG~--~~~~~  144 (387)
T d1k3ia3          75 DMF-CPGISMDGNGQIVVTGGND-----AKKTSLYDSSSDSWIPGPDMQVAR--GYQSSATMSDGRVFTIGGS--WSGGV  144 (387)
T ss_dssp             CCS-SCEEEECTTSCEEEECSSS-----TTCEEEEEGGGTEEEECCCCSSCC--SSCEEEECTTSCEEEECCC--CCSSS
T ss_pred             ccc-eeEEEEecCCcEEEeecCC-----CcceeEecCccCcccccccccccc--cccceeeecCCceeeeccc--ccccc
Confidence            111 1113445689999987655     24678999999999988 444443  3334444 48999998876  22222


Q ss_pred             CCCeEEEEEECCCCCeeEEEEeecCCc------------ccc-eEEeeCCcEEEEEcC--eEEEEeCCCCcEEEEe
Q 045675          279 LSNRFELWVMNEGKGWTRTFNTAFERI------------AWP-VGSFRDSKIIMKSVD--QFFLFNPKTKRNFILP  339 (382)
Q Consensus       279 ~~~~~~iW~l~~~~~W~~~~~i~~~~~------------~~~-~~~~~~g~l~l~~~~--~~~~yd~~t~~~~~v~  339 (382)
                      ....+++|..... .|..+..+.....            ..+ +....+|+++.....  .+..||..+..|....
T Consensus       145 ~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~  219 (387)
T d1k3ia3         145 FEKNGEVYSPSSK-TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG  219 (387)
T ss_dssp             CCCCEEEEETTTT-EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred             ccceeeeecCCCC-ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecc
Confidence            3456676665554 5987654421100            111 223345666655543  7889999999998774

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.9e-08  Score=71.68  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHhcCChhhhhhhhccchhhHhhcCCHHHHHHHHc
Q 045675           12 VPLVIITDILLQLPIKSIVRFKCVSKSWLLLIKSSEFVTAHLN   54 (382)
Q Consensus        12 LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~sp~F~~~~~~   54 (382)
                      |+|||+..||+.|++++|.++.+|||+|+.+++++.+-+....
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~   60 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE   60 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4469999999999999999999999999999999888776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.05  E-value=0.35  Score=40.96  Aligned_cols=206  Identities=11%  Similarity=-0.008  Sum_probs=111.1

Q ss_pred             cCceEEEeeCCCCceeEEEEcccccceeccC-CCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          107 CNGLLCLDVSSAFGMAFVLWNPATNEFKGLP-TPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       107 ~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP-~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      .+|-|.+.+..  ..+++.+||.+++..... +...          ...++.+++.. ...|... . .......+..++
T Consensus        49 ~~G~Ly~~D~~--~g~I~ri~p~g~~~~~~~~~~~~----------~p~gla~~~dG-~l~va~~-~-~~~~~~~i~~~~  113 (319)
T d2dg1a1          49 RQGQLFLLDVF--EGNIFKINPETKEIKRPFVSHKA----------NPAAIKIHKDG-RLFVCYL-G-DFKSTGGIFAAT  113 (319)
T ss_dssp             TTSCEEEEETT--TCEEEEECTTTCCEEEEEECSSS----------SEEEEEECTTS-CEEEEEC-T-TSSSCCEEEEEC
T ss_pred             CCCCEEEEECC--CCEEEEEECCCCeEEEEEeCCCC----------CeeEEEECCCC-CEEEEec-C-CCccceeEEEEc
Confidence            35666666543  557888999988654432 2221          12367777754 3222211 1 111233566666


Q ss_pred             CCCCCeeeecCC-CC-eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eC
Q 045675          186 TSTGKWKEVAAG-TG-SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YD  262 (382)
Q Consensus       186 s~t~~W~~~~~~-~~-~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~  262 (382)
                      ..++........ .. ....   .-.+--+|.+|+-............+..+|+.....+.+.-+..   ..-.++. -+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~n---d~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~---~pnGia~s~d  187 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCID---DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTD  187 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEE---EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTT
T ss_pred             CCCceeeeeccCCCcccCCc---ceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc---eeeeeeeccc
Confidence            666655443322 11 1111   12334578877765443222234578888988776665421111   1122343 25


Q ss_pred             C-eEEEEEecCCCccCCCCCeEEEEEECCCCC--eeEEEEe--ecCCcccc--eEEeeCCcEEEEEcC--eEEEEeCCCC
Q 045675          263 Q-SLALAVYPGLGFRSRLSNRFELWVMNEGKG--WTRTFNT--AFERIAWP--VGSFRDSKIIMKSVD--QFFLFNPKTK  333 (382)
Q Consensus       263 g-~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~--W~~~~~i--~~~~~~~~--~~~~~~g~l~l~~~~--~~~~yd~~t~  333 (382)
                      | .|+++...        ...+..+.++....  +......  .......|  +++..+|.|++....  +|.+||++.+
T Consensus       188 g~~lyvad~~--------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~  259 (319)
T d2dg1a1         188 EKVLWVTETT--------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY  259 (319)
T ss_dssp             SSEEEEEEGG--------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             cceEEEeccc--------CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCc
Confidence            5 47777665        56666666665412  3333332  22333445  455567889888754  9999999988


Q ss_pred             cEEEEeee
Q 045675          334 RNFILPID  341 (382)
Q Consensus       334 ~~~~v~~~  341 (382)
                      .+.++.++
T Consensus       260 ~l~~i~~P  267 (319)
T d2dg1a1         260 PIGQILIP  267 (319)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEeCC
Confidence            88888765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.89  E-value=3.7  Score=35.83  Aligned_cols=196  Identities=12%  Similarity=0.005  Sum_probs=107.3

Q ss_pred             ceEEEeeCCCCceeEEEEcccccceec-cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECC
Q 045675          109 GLLCLDVSSAFGMAFVLWNPATNEFKG-LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTS  187 (382)
Q Consensus       109 Gll~~~~~~~~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~  187 (382)
                      .++++....  ...+.|+|+.|++.+. ++...           ...++.|.|+. +|-++.  .    ....+.+++..
T Consensus        32 ~~~~v~~~d--~g~v~v~D~~t~~v~~~~~~g~-----------~~~~v~fSpDG-~~l~~~--s----~dg~v~~~d~~   91 (432)
T d1qksa2          32 NLFSVTLRD--AGQIALIDGSTYEIKTVLDTGY-----------AVHISRLSASG-RYLFVI--G----RDGKVNMIDLW   91 (432)
T ss_dssp             GEEEEEETT--TTEEEEEETTTCCEEEEEECSS-----------CEEEEEECTTS-CEEEEE--E----TTSEEEEEETT
T ss_pred             cEEEEEEcC--CCEEEEEECCCCcEEEEEeCCC-----------CeeEEEECCCC-CEEEEE--c----CCCCEEEEEee
Confidence            454444333  5689999999998665 44322           13467788865 444443  2    23479999988


Q ss_pred             CCCeeeecCC---CCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEe-CCCCCCC--------CCe
Q 045675          188 TGKWKEVAAG---TGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT-AMPELPT--------DCY  255 (382)
Q Consensus       188 t~~W~~~~~~---~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i-~~P~~~~--------~~~  255 (382)
                      ++.-......   ..+... -......-+|+..+.....     ...|..+|..+.+.... .......        ...
T Consensus        92 t~~~~~~~~i~~~~~~~~~-~~s~~~SpDG~~l~vs~~~-----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2          92 MKEPTTVAEIKIGSEARSI-ETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             SSSCCEEEEEECCSEEEEE-EECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             CCCceEEEEEecCCCCCCe-EEecccCCCCCEEEEEcCC-----CCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence            8764433222   111111 0011222368755444433     35788999988766543 2211100        012


Q ss_pred             eeEE-EeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccceEEeeCCc-EEEEEcC--eEEEEeCC
Q 045675          256 VKAL-SYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWPVGSFRDSK-IIMKSVD--QFFLFNPK  331 (382)
Q Consensus       256 ~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~~~~~~~g~-l~l~~~~--~~~~yd~~  331 (382)
                      ..+. .-+|...++...       ....+.+|...+. .=.++..|+......-+.+..+|. ++....+  .+.+.|.+
T Consensus       166 ~~v~~s~dg~~~~vs~~-------~~~~i~~~d~~~~-~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         166 AAILASHYRPEFIVNVK-------ETGKILLVDYTDL-NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEEEECSSSSEEEEEET-------TTTEEEEEETTCS-SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             eEEEECCCCCEEEEEEc-------cCCeEEEEEccCC-CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            2222 235655555554       2566776665543 223445566555455567777887 4555543  88889998


Q ss_pred             CCcEEEE
Q 045675          332 TKRNFIL  338 (382)
Q Consensus       332 t~~~~~v  338 (382)
                      +++....
T Consensus       238 ~~~~~~~  244 (432)
T d1qksa2         238 EGKLVAI  244 (432)
T ss_dssp             TTEEEEE
T ss_pred             cceEEEE
Confidence            8876654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.75  E-value=2.9  Score=34.43  Aligned_cols=192  Identities=14%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceec---cCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKG---LPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAE  182 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  182 (382)
                      +-+|-+++....  ...+.|||..+++...   ++....          ....+.+.+.. .+.+++.    ......+.
T Consensus        67 sp~g~~latg~~--dg~i~iwd~~~~~~~~~~~~~~~~~----------~v~~v~~s~d~-~~l~~~~----~~~~~~~~  129 (311)
T d1nr0a1          67 SPSGYYCASGDV--HGNVRIWDTTQTTHILKTTIPVFSG----------PVKDISWDSES-KRIAAVG----EGRERFGH  129 (311)
T ss_dssp             CTTSSEEEEEET--TSEEEEEESSSTTCCEEEEEECSSS----------CEEEEEECTTS-CEEEEEE----CCSSCSEE
T ss_pred             eCCCCeEecccc--CceEeeeeeeccccccccccccccC----------ccccccccccc-ccccccc----cccccccc
Confidence            346665554443  5689999988876432   222111          12356666643 3333322    11233577


Q ss_pred             EEECCCCCeeeecCCCCeeEEeCCcceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE
Q 045675          183 VYSTSTGKWKEVAAGTGSCVIYGGQDAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS  260 (382)
Q Consensus       183 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~  260 (382)
                      |+...+++-...-.... ...    ..+.+  +|....+.+..     ...|..||+.+.+..........  ....+..
T Consensus       130 v~~~~~~~~~~~l~~h~-~~v----~~v~~~~~~~~~l~sgs~-----d~~i~i~d~~~~~~~~~~~~~~~--~i~~v~~  197 (311)
T d1nr0a1         130 VFLFDTGTSNGNLTGQA-RAM----NSVDFKPSRPFRIISGSD-----DNTVAIFEGPPFKFKSTFGEHTK--FVHSVRY  197 (311)
T ss_dssp             EEETTTCCBCBCCCCCS-SCE----EEEEECSSSSCEEEEEET-----TSCEEEEETTTBEEEEEECCCSS--CEEEEEE
T ss_pred             ccccccccccccccccc-ccc----ccccccccceeeeccccc-----ccccccccccccccccccccccc--ccccccc
Confidence            78777654221110000 111    22222  45443333322     24688899988766554322211  2223332


Q ss_pred             e-CCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCc--------ccceEEeeCCcEEEEE-cC-eEEEEe
Q 045675          261 Y-DQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERI--------AWPVGSFRDSKIIMKS-VD-QFFLFN  329 (382)
Q Consensus       261 ~-~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~--------~~~~~~~~~g~l~l~~-~~-~~~~yd  329 (382)
                      . +|.+.+....        ...+.+|.+.+.   .+...+.....        +.-+.+..+|..++.. .+ .+.+||
T Consensus       198 ~p~~~~l~~~~~--------d~~v~~~d~~~~---~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd  266 (311)
T d1nr0a1         198 NPDGSLFASTGG--------DGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  266 (311)
T ss_dssp             CTTSSEEEEEET--------TSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             Cccccccccccc--------cccccccccccc---cccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEE
Confidence            2 6676665554        678999988765   33444432211        2334555677755544 34 799999


Q ss_pred             CCCCcEEE
Q 045675          330 PKTKRNFI  337 (382)
Q Consensus       330 ~~t~~~~~  337 (382)
                      .++++..+
T Consensus       267 ~~t~~~~~  274 (311)
T d1nr0a1         267 VATLKVEK  274 (311)
T ss_dssp             TTTTEEEE
T ss_pred             CCCCcEEE
Confidence            99987544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=91.27  E-value=2.9  Score=33.44  Aligned_cols=98  Identities=7%  Similarity=-0.071  Sum_probs=54.6

Q ss_pred             cEEEEEECCCceeeEe-CCCCCCCCCeeeEE-EeCC-eEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcc
Q 045675          230 KFVVSYDMNLELFWRT-AMPELPTDCYVKAL-SYDQ-SLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIA  306 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~-~~~g-~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~  306 (382)
                      ..+...+....+.... ..+..    ...+. ..+| .+++....  .    ....+.+|-+...   ..+..++.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~v~~~~--~----~~~~v~v~D~~t~---~~~~~~~~~~~~  246 (301)
T d1l0qa2         180 MSISVIDTVTNSVIDTVKVEAA----PSGIAVNPEGTKAYVTNVD--K----YFNTVSMIDTGTN---KITARIPVGPDP  246 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSE----EEEEEECTTSSEEEEEEEC--S----SCCEEEEEETTTT---EEEEEEECCSSE
T ss_pred             cccccccccceeeeecccccCC----cceeecccccccccccccc--c----eeeeeeeeecCCC---eEEEEEcCCCCE
Confidence            3566666665554333 33321    11222 2234 45554443  2    2456777766554   556666654434


Q ss_pred             cceEEeeCCc-EEEEEcC--eEEEEeCCCCcEE-EEee
Q 045675          307 WPVGSFRDSK-IIMKSVD--QFFLFNPKTKRNF-ILPI  340 (382)
Q Consensus       307 ~~~~~~~~g~-l~l~~~~--~~~~yd~~t~~~~-~v~~  340 (382)
                      .-+++..+|+ |++....  .+.+||+++++.. .+.+
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            4566777887 5555543  8999999999754 3443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.72  E-value=3.1  Score=34.29  Aligned_cols=52  Identities=12%  Similarity=0.012  Sum_probs=36.9

Q ss_pred             ceEEE--CceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEE
Q 045675          208 DAVAV--KGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAV  269 (382)
Q Consensus       208 ~~v~~--~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~  269 (382)
                      .+++.  +|.+||..-..      ..|..+|+.+++.+.+.+|...    ..++ ..+|.|.+..
T Consensus        22 gp~wd~~~~~l~wvDi~~------~~I~r~d~~~g~~~~~~~~~~~----~~i~~~~dg~l~va~   76 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILE------RELHELHLASGRKTVHALPFMG----SALAKISDSKQLIAS   76 (295)
T ss_dssp             EEEEETTTTEEEEEEGGG------TEEEEEETTTTEEEEEECSSCE----EEEEEEETTEEEEEE
T ss_pred             CCeEECCCCEEEEEECCC------CEEEEEECCCCeEEEEECCCCc----EEEEEecCCCEEEEE
Confidence            55654  78999987554      5899999999999988888653    2222 3467766653

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.96  E-value=2.1  Score=39.06  Aligned_cols=113  Identities=12%  Similarity=0.138  Sum_probs=60.2

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCc--eeeEe-CCCCCC-----C-CCeeeEEEeCCeEEEEEecCCCccC
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLE--LFWRT-AMPELP-----T-DCYVKALSYDQSLALAVYPGLGFRS  277 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~--~~~~i-~~P~~~-----~-~~~~~l~~~~g~L~~~~~~~~~~~~  277 (382)
                      ..+++++|++|.-...+       .|+|+|..|.  .|+.- ..+...     . .........++++++....  .   
T Consensus        60 stPiv~~g~vyv~t~~~-------~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g---  127 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMSWS-------RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD--G---  127 (560)
T ss_dssp             CCCEEETTEEEEEEGGG-------EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT--S---
T ss_pred             eCCEEECCEEEEECCCC-------eEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC--C---
Confidence            47899999999876655       8999999875  55532 111110     0 0122344456666554443  1   


Q ss_pred             CCCCeEEEEEECCCCC---eeEEEEeecCC--cccceEEeeCCcEEEEEcC-------eEEEEeCCCCcEEEE
Q 045675          278 RLSNRFELWVMNEGKG---WTRTFNTAFER--IAWPVGSFRDSKIIMKSVD-------QFFLFNPKTKRNFIL  338 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~---W~~~~~i~~~~--~~~~~~~~~~g~l~l~~~~-------~~~~yd~~t~~~~~v  338 (382)
                            .+..++...|   |.....-+...  ...+-.+. ++.|++....       .+..||.+|++...-
T Consensus       128 ------~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         128 ------RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             ------EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ------EEEEEECCCCcEEeccCccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCCceEEee
Confidence                  3445553333   65432111111  12222222 4445543321       699999999986654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.87  E-value=3.6  Score=33.78  Aligned_cols=113  Identities=9%  Similarity=0.044  Sum_probs=68.9

Q ss_pred             ceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEE-EeCCeEEEEEecCCCccCCCCCeEEEE
Q 045675          208 DAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKAL-SYDQSLALAVYPGLGFRSRLSNRFELW  286 (382)
Q Consensus       208 ~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~-~~~g~L~~~~~~~~~~~~~~~~~~~iW  286 (382)
                      -++.-+|.+|+.....      ..|..+|+..+.-.....+..    ...++ .-+|.|+++...        ...+.+|
T Consensus        33 iAv~pdG~l~vt~~~~------~~I~~i~p~g~~~~~~~~~~~----~~gla~~~dG~l~v~~~~--------~~~~~~~   94 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEV------GEIVSITPDGNQQIHATVEGK----VSGLAFTSNGDLVATGWN--------ADSIPVV   94 (302)
T ss_dssp             EEECTTSCEEEEETTT------TEEEEECTTCCEEEEEECSSE----EEEEEECTTSCEEEEEEC--------TTSCEEE
T ss_pred             EEECCCCCEEEEeCCC------CEEEEEeCCCCEEEEEcCCCC----cceEEEcCCCCeEEEecC--------CceEEEE
Confidence            3455589988765443      589999998775544455532    23343 348898888765        4455555


Q ss_pred             EECCCCC-eeEEEEeecCCcccceEEeeCCcEEEEEcC--eEEEEeCCCCcEEEE
Q 045675          287 VMNEGKG-WTRTFNTAFERIAWPVGSFRDSKIIMKSVD--QFFLFNPKTKRNFIL  338 (382)
Q Consensus       287 ~l~~~~~-W~~~~~i~~~~~~~~~~~~~~g~l~l~~~~--~~~~yd~~t~~~~~v  338 (382)
                      .+....+ -......+-.....-+.+..+|.+++....  .++.+|++++..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          95 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeE
Confidence            5554434 333333332222344555567777776654  899999998876654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.57  E-value=6.3  Score=32.20  Aligned_cols=200  Identities=10%  Similarity=-0.100  Sum_probs=102.2

Q ss_pred             eccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEE
Q 045675          105 GSCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVY  184 (382)
Q Consensus       105 ~s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vy  184 (382)
                      ...+|-|...+-.  ...++-+||.|++....+.+..           ..+++.+..  .-.+++ ..      ..+..|
T Consensus        26 d~~~~~l~wvDi~--~~~I~r~d~~~g~~~~~~~~~~-----------~~~i~~~~d--g~l~va-~~------~gl~~~   83 (295)
T d2ghsa1          26 DPASGTAWWFNIL--ERELHELHLASGRKTVHALPFM-----------GSALAKISD--SKQLIA-SD------DGLFLR   83 (295)
T ss_dssp             ETTTTEEEEEEGG--GTEEEEEETTTTEEEEEECSSC-----------EEEEEEEET--TEEEEE-ET------TEEEEE
T ss_pred             ECCCCEEEEEECC--CCEEEEEECCCCeEEEEECCCC-----------cEEEEEecC--CCEEEE-Ee------CccEEe
Confidence            4446666665543  4578899999998766543222           113444432  222333 22      268899


Q ss_pred             ECCCCCeeeecCCC----CeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE
Q 045675          185 STSTGKWKEVAAGT----GSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS  260 (382)
Q Consensus       185 ss~t~~W~~~~~~~----~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~  260 (382)
                      ++.++.++......    .....   ...+--+|.+|+-............+..++  ..+.+.+......   .-.++.
T Consensus        84 d~~tg~~~~l~~~~~~~~~~~~n---d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~~~~---~Ng~~~  155 (295)
T d2ghsa1          84 DTATGVLTLHAELESDLPGNRSN---DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI---PNSICF  155 (295)
T ss_dssp             ETTTCCEEEEECSSTTCTTEEEE---EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS---EEEEEE
T ss_pred             ecccceeeEEeeeecCCCcccce---eeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEeeccCC---cceeee
Confidence            99999887765441    12222   123334677655443322111122444333  3444443211111   112222


Q ss_pred             -eCC-eEEEEEecCCCccCCCCCeEEEEEECCCCC-eeEE--EEeecCCc-ccc--eEEeeCCcEEEEEcC--eEEEEeC
Q 045675          261 -YDQ-SLALAVYPGLGFRSRLSNRFELWVMNEGKG-WTRT--FNTAFERI-AWP--VGSFRDSKIIMKSVD--QFFLFNP  330 (382)
Q Consensus       261 -~~g-~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~-W~~~--~~i~~~~~-~~~--~~~~~~g~l~l~~~~--~~~~yd~  330 (382)
                       .++ .|+++...        ...+..+.++...+ +...  ..+..... ..|  +++..+|.|++....  +|..||+
T Consensus       156 s~d~~~l~~~dt~--------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         156 SPDGTTGYFVDTK--------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             CTTSCEEEEEETT--------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             cCCCceEEEeecc--------cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence             234 45655543        45555555553322 2111  11222221 333  445567778888644  8999999


Q ss_pred             CCCcEEEEeeeC
Q 045675          331 KTKRNFILPIDS  342 (382)
Q Consensus       331 ~t~~~~~v~~~~  342 (382)
                      +.+..+++.++.
T Consensus       228 ~G~~~~~i~lP~  239 (295)
T d2ghsa1         228 DGNHIARYEVPG  239 (295)
T ss_dssp             TCCEEEEEECSC
T ss_pred             CCcEeeEecCCC
Confidence            999999988764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.70  E-value=5.8  Score=32.85  Aligned_cols=112  Identities=6%  Similarity=-0.022  Sum_probs=63.8

Q ss_pred             ECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccCCCCCeEEEEEECC
Q 045675          212 VKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRSRLSNRFELWVMNE  290 (382)
Q Consensus       212 ~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~  290 (382)
                      -+|.|||.....      ..|..+|+.++.......+...  ....++. -+|+|+++...  .    ......+..++.
T Consensus        49 ~~G~Ly~~D~~~------g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~dG~l~va~~~--~----~~~~~~i~~~~~  114 (319)
T d2dg1a1          49 RQGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLG--D----FKSTGGIFAATE  114 (319)
T ss_dssp             TTSCEEEEETTT------CEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECT--T----SSSCCEEEEECT
T ss_pred             CCCCEEEEECCC------CEEEEEECCCCeEEEEEeCCCC--CeeEEEECCCCCEEEEecC--C----CccceeEEEEcC
Confidence            368999986544      4899999998876555433322  2334443 47899887764  1    123445666665


Q ss_pred             CCC-eeEEEEeecCCc--ccceEEeeCCcEEEEEcC--------eEEEEeCCCCcEEEE
Q 045675          291 GKG-WTRTFNTAFERI--AWPVGSFRDSKIIMKSVD--------QFFLFNPKTKRNFIL  338 (382)
Q Consensus       291 ~~~-W~~~~~i~~~~~--~~~~~~~~~g~l~l~~~~--------~~~~yd~~t~~~~~v  338 (382)
                      ..+ ..... -.....  ..-+.+..+|.+++....        .++.++++.+.++.+
T Consensus       115 ~~~~~~~~~-~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~  172 (319)
T d2dg1a1         115 NGDNLQDII-EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  172 (319)
T ss_dssp             TSCSCEEEE-CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             CCceeeeec-cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEE
Confidence            422 22111 011112  223455567777776432        578888887776655

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.27  E-value=7  Score=31.42  Aligned_cols=202  Identities=9%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             ccCceEEEeeCCCCceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEE
Q 045675          106 SCNGLLCLDVSSAFGMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYS  185 (382)
Q Consensus       106 s~~Gll~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vys  185 (382)
                      +.+|-|.+.+..  ...+.++||...-....+........  ..  ...++.++...+.+.++..     .....+.+++
T Consensus        31 d~dg~i~VaD~~--n~rI~v~d~~G~~~~~~~~~~~~~~~--~~--~p~~~~~~~~~~~~~~~~~-----~~~~~i~~~~   99 (279)
T d1q7fa_          31 NAQNDIIVADTN--NHRIQIFDKEGRFKFQFGECGKRDSQ--LL--YPNRVAVVRNSGDIIVTER-----SPTHQIQIYN   99 (279)
T ss_dssp             CTTCCEEEEEGG--GTEEEEECTTSCEEEEECCBSSSTTC--BS--SEEEEEEETTTTEEEEEEC-----GGGCEEEEEC
T ss_pred             cCCCCEEEEECC--CCEEEEEeCCCCEEEEecccCCCccc--cc--ccccccccccccccceecc-----CCcccccccc
Confidence            347777777653  55788899864433334332211110  01  1224455555444433321     1234667777


Q ss_pred             CCCCCeeeecCCCCeeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCe
Q 045675          186 TSTGKWKEVAAGTGSCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQS  264 (382)
Q Consensus       186 s~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~  264 (382)
                      .....++.........+.   .-++.-+|.+|......      ..+..||...+....+..+.... ....++. .+|.
T Consensus       100 ~~g~~~~~~~~~~~~~p~---~~avd~~G~i~v~~~~~------~~~~~~~~~g~~~~~~g~~~~~~-~~~~i~~d~~g~  169 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPR---GVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLE-FPNGVVVNDKQE  169 (279)
T ss_dssp             TTSCEEEEECTTTCSCEE---EEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCS-SEEEEEECSSSE
T ss_pred             ccccceeecCCCcccccc---eeccccCCcEEEEeecc------ceeeEeccCCceeeccccccccc-ccceeeecccee
Confidence            766666655443211111   12334468877765443      47889999887666664433321 2333443 3678


Q ss_pred             EEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecC-CcccceE--EeeCCcEEEEEcC---eEEEEeCCCCcEEEE
Q 045675          265 LALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFE-RIAWPVG--SFRDSKIIMKSVD---QFFLFNPKTKRNFIL  338 (382)
Q Consensus       265 L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~-~~~~~~~--~~~~g~l~l~~~~---~~~~yd~~t~~~~~v  338 (382)
                      |+++...        ...+.++  +.. | ..+..+... .+..|.+  +..+|.|++....   .+..||.+.+....+
T Consensus       170 i~v~d~~--------~~~V~~~--d~~-G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         170 IFISDNR--------AHCVKVF--NYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             EEEEEGG--------GTEEEEE--ETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             EEeeecc--------ccceeee--ecC-C-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEE
Confidence            8877665        4445444  433 3 123344322 2344554  4467788888642   688999876555555


Q ss_pred             ee
Q 045675          339 PI  340 (382)
Q Consensus       339 ~~  340 (382)
                      ..
T Consensus       238 ~~  239 (279)
T d1q7fa_         238 ES  239 (279)
T ss_dssp             EE
T ss_pred             eC
Confidence            43

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.63  E-value=7.6  Score=31.20  Aligned_cols=176  Identities=8%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             ceeEEEEcccccceeccCCCCCccccccceeEEEEEEEeeCCCCCeEEEEEEeecCCCCCEEEEEECCCCCeeeecCCCC
Q 045675          120 GMAFVLWNPATNEFKGLPTPSLTESRLKTFWMVSLGFGFNQDTNDYVLVRIVNFQARYDAIAEVYSTSTGKWKEVAAGTG  199 (382)
Q Consensus       120 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~  199 (382)
                      ...+.++|+.......+......         ...++..|+... +.+.   .   .....+.+|+.....-+.......
T Consensus        92 ~~~i~~~~~~g~~~~~~~~~~~~---------~p~~~avd~~G~-i~v~---~---~~~~~~~~~~~~g~~~~~~g~~~~  155 (279)
T d1q7fa_          92 THQIQIYNQYGQFVRKFGATILQ---------HPRGVTVDNKGR-IIVV---E---CKVMRVIIFDQNGNVLHKFGCSKH  155 (279)
T ss_dssp             GCEEEEECTTSCEEEEECTTTCS---------CEEEEEECTTSC-EEEE---E---TTTTEEEEECTTSCEEEEEECTTT
T ss_pred             ccccccccccccceeecCCCccc---------ccceeccccCCc-EEEE---e---eccceeeEeccCCceeeccccccc
Confidence            34667777765555444332221         122455555432 2221   1   123366677765543333222211


Q ss_pred             -eeEEeCCcceEEECceEEEEeecccccccccEEEEEECCCceeeEeCCCCCCCCCeeeEEE-eCCeEEEEEecCCCccC
Q 045675          200 -SCVIYGGQDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRTAMPELPTDCYVKALS-YDQSLALAVYPGLGFRS  277 (382)
Q Consensus       200 -~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i~~P~~~~~~~~~l~~-~~g~L~~~~~~~~~~~~  277 (382)
                       ....   .-++--+|.+|+.....      ..|..||...+....+..+.... ....+++ .+|.|+++...      
T Consensus       156 ~~~~~---~i~~d~~g~i~v~d~~~------~~V~~~d~~G~~~~~~g~~g~~~-~P~giavD~~G~i~Vad~~------  219 (279)
T d1q7fa_         156 LEFPN---GVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITN-YPIGVGINSNGEILIADNH------  219 (279)
T ss_dssp             CSSEE---EEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSC-SEEEEEECTTCCEEEEECS------
T ss_pred             ccccc---eeeeccceeEEeeeccc------cceeeeecCCceeeeeccccccc-CCcccccccCCeEEEEECC------
Confidence             1111   12223467888876554      58999999887776665443321 2334444 47888887654      


Q ss_pred             CCCCeEEEEEECCCCC-eeEEEEeecCC-cccceEEeeCCcEEEEEcC-eEEEEeCC
Q 045675          278 RLSNRFELWVMNEGKG-WTRTFNTAFER-IAWPVGSFRDSKIIMKSVD-QFFLFNPK  331 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~-W~~~~~i~~~~-~~~~~~~~~~g~l~l~~~~-~~~~yd~~  331 (382)
                       ....+.++  +.. | +.....-+... ....+++..+|.|++...+ ++..|...
T Consensus       220 -~~~~v~~f--~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         220 -NNFNLTIF--TQD-GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             -SSCEEEEE--CTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             -CCcEEEEE--CCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence             13455554  333 4 33222222211 1344566677888777655 56665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.51  E-value=3.7  Score=37.48  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=58.3

Q ss_pred             cceEEECceEEEEeecccccccccEEEEEECCCceeeEe---CCCCCC-----CC-CeeeEEEeCCeEEEEEecCCCccC
Q 045675          207 QDAVAVKGVLHWIANGIGVLVNEKFVVSYDMNLELFWRT---AMPELP-----TD-CYVKALSYDQSLALAVYPGLGFRS  277 (382)
Q Consensus       207 ~~~v~~~G~lywl~~~~~~~~~~~~i~~fD~~~~~~~~i---~~P~~~-----~~-~~~~l~~~~g~L~~~~~~~~~~~~  277 (382)
                      ..+++.+|++|.....+       .|+|+|..|.+-..-   ..+...     .. ........++++++....  .   
T Consensus        71 stPiv~~g~vyv~t~~~-------~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~--g---  138 (573)
T d1kb0a2          71 ATPVVVDGIMYVSASWS-------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD--G---  138 (573)
T ss_dssp             CCCEEETTEEEEECGGG-------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT--S---
T ss_pred             ECCEEECCEEEEECCCC-------eEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecc--c---
Confidence            36788999999866544       799999987644332   111110     00 112244556666654332  1   


Q ss_pred             CCCCeEEEEEECCCCC---eeEEEEeecC-C--c-ccceEEeeCCcEEEEEc-------CeEEEEeCCCCcEEEE
Q 045675          278 RLSNRFELWVMNEGKG---WTRTFNTAFE-R--I-AWPVGSFRDSKIIMKSV-------DQFFLFNPKTKRNFIL  338 (382)
Q Consensus       278 ~~~~~~~iW~l~~~~~---W~~~~~i~~~-~--~-~~~~~~~~~g~l~l~~~-------~~~~~yd~~t~~~~~v  338 (382)
                            .++.|+-..|   |.....-... .  + ..|+. . ++.|++...       ..+..||.+|++...-
T Consensus       139 ------~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         139 ------RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-F-KGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             ------EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ------ceeeeccccccceecccCccCCcceEEeecceEE-E-eccEEEeeccccccccceEEEEecCCccceee
Confidence                  3445543323   6543110000 0  1 22332 2 444555332       1799999999986553

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.21  E-value=11  Score=30.27  Aligned_cols=92  Identities=13%  Similarity=0.217  Sum_probs=54.1

Q ss_pred             cEEEEEECCCceeeEe-CCCCCCCCCeeeEEEeCCeEEEEEecCCCccCCCCCeEEEEEECCCCCeeEEEEeecCCcccc
Q 045675          230 KFVVSYDMNLELFWRT-AMPELPTDCYVKALSYDQSLALAVYPGLGFRSRLSNRFELWVMNEGKGWTRTFNTAFERIAWP  308 (382)
Q Consensus       230 ~~i~~fD~~~~~~~~i-~~P~~~~~~~~~l~~~~g~L~~~~~~~~~~~~~~~~~~~iW~l~~~~~W~~~~~i~~~~~~~~  308 (382)
                      ..|..+|..+...... ....    ........++.+.+....        ...+.+|.+++.   .+............
T Consensus       223 ~~i~i~d~~~~~~~~~~~~h~----~~v~~~~~~~~~l~~~~~--------dg~i~iwd~~~~---~~~~~~~~~~~~~~  287 (355)
T d1nexb2         223 TTIRIWDLENGELMYTLQGHT----ALVGLLRLSDKFLVSAAA--------DGSIRGWDANDY---SRKFSYHHTNLSAI  287 (355)
T ss_dssp             SCEEEEETTTCCEEEEECCCS----SCCCEEEECSSEEEEECT--------TSEEEEEETTTC---CEEEEEECTTCCCC
T ss_pred             ceEEeeecccccccccccccc----ccccccccccceeeeeec--------cccccccccccc---ceecccccCCceEE
Confidence            3677888877654332 2211    122333445665544443        678999988776   33333333333334


Q ss_pred             eEEeeCCcEEEEEcC-eEEEEeCCCCcEE
Q 045675          309 VGSFRDSKIIMKSVD-QFFLFNPKTKRNF  336 (382)
Q Consensus       309 ~~~~~~g~l~l~~~~-~~~~yd~~t~~~~  336 (382)
                      ..+..++.++....+ .+.+||+++++.-
T Consensus       288 ~~~~~~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         288 TTFYVSDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             CEEEECSSEEEEEETTEEEEEETTTCCBC
T ss_pred             EEEcCCCCEEEEEeCCEEEEEECCCCCEE
Confidence            455566777666655 8999999998754