Citrus Sinensis ID: 045695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccccccccccccccccccEEEEccccHHHHHHccccccccEEEEcccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHcccccccccHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccccEEEEEEEEcccccccHHHcccccccccccEEEEccEEEEEEEEEccccccEEEEEEEEEccccEEEEEEEccccccEEEEccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHEHHcccccccccHHEEEHHHcccEEEEEEEEEcccccHHHHHHHHcccccEEEEcccEcHHHcHHHHEHHHHccccccccccccEEEEEcccccEEEEEcEccHHHHccccEEcEccccccccccccHHHHHHHHHHHHHHHcEcccccHHHHHHHHHHHHcccccEEEEccEcccEEEEcEEcEccccEEccHHHHHHHcccccEEEEEccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEccEEEEEEccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIPKLYTSLFVYTAALNYsfmhnataaqpvsyydyiiigggtagcplAATLSQNASVLLLErggspygnpnitnlgsfgaalsdlsstspsqrfisedgvinsrarvlgggsclnagfytraapyyvretgwderlvNESYQWVEKVVafeppmrqWQSAVRDGLVEvgvlpyngftydhlygtkiggtifdqngqrhTAADLLEYANPSGLTLLLHATVHKVLFRIkgkarpqahgvvfrdatgaKHRAylkngpkneiivsagalgspqllmlsg
Flexible Loop (DISEMBL)
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIkgkarpqahgvvfrdatgaKHRAYLKNGPKNEIivsagalgspqllmlsg
Low Complexity Region (SEG)
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Disordered region (IsUnstruct)
***KLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFG***************ISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG************
Disordered Region (DISOPRED)
MIPKLYTSLFVYTAALNYS*********PVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Disordered Region (DISEMBL)
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALS**********FISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Disordered Region (DISPRO)
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPKLYTSLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q9S746	594	Protein HOTHEAD OS=Arabid	no	no	0.888	0.414	0.607	2e-87
Q9SSM2	552	(R)-mandelonitrile lyase-	no	no	0.920	0.461	0.535	3e-74
P52707	573	(R)-mandelonitrile lyase	N/A	no	0.924	0.446	0.461	2e-62
O24243	559	(R)-mandelonitrile lyase	N/A	no	0.942	0.466	0.452	7e-61
O50048	576	(R)-mandelonitrile lyase	N/A	no	0.945	0.454	0.450	7e-61
Q945K2	563	(R)-mandelonitrile lyase	N/A	no	0.920	0.452	0.446	2e-59
P52706	563	(R)-mandelonitrile lyase	N/A	no	0.916	0.451	0.452	6e-59
O82784	574	(R)-mandelonitrile lyase	N/A	no	0.920	0.444	0.440	9e-57
P18172	625	Glucose dehydrogenase [ac	yes	no	0.859	0.380	0.295	1e-13
P18173	625	Glucose dehydrogenase [ac	yes	no	0.859	0.380	0.284	5e-12

>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1

 Score =  322 bits (826), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 194/247 (78%), Gaps = 1/247 (0%)

Query: 31  SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
           S YDYI+IGGGTAGCPLAATLSQN SVL+LERGG P+ N N++ L +F   L+D+S++S 
Sbjct: 61  SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120

Query: 91  SQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAF 150
           SQ F+S DGV N+RARVLGGGSC+NAGFY+RA   +V+  GWD +LV ESY WVE+ +  
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query: 151 EPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPS 210
           +P +  WQ A+RD L+EVGV P+NGFTYDH+ GTKIGGTIFD+ G+RHTAA+LL YANP 
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query: 211 GLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 270
            L +L++ATV K++F   G  RP+  GV+F+D  G +H+A L N   +E+I+S+GA+GSP
Sbjct: 241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299

Query: 271 QLLMLSG 277
           Q+LMLSG
Sbjct: 300 QMLMLSG 306

Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1

 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/265 (53%), Positives = 187/265 (70%), Gaps = 10/265 (3%)

Query: 20  FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFG 79
           F+ NAT      YYDYII+GGGTAGCPLAATLSQ+  VLLLERGG PY  PN+ +   F 
Sbjct: 41  FISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFL 100

Query: 80  AALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERL 136
             L+D+++  SP+Q FISE+GV N+R RVLGG S +NAGFY+RA   +   +G  WD   
Sbjct: 101 TTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSS 160

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VN+SY+WVE+ + F P +R WQ+A+RD L+EVGV P+NGFT +H  GTKIGG+ FD+ G+
Sbjct: 161 VNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGR 220

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLF----RIKGKARPQAHGVVFRDATGAKHRAYL 252
           RH++ADLL YA  S + + ++ATV +VL      + G +   A GVV+RD  G  H A +
Sbjct: 221 RHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSG-SNVSAIGVVYRDQLGRFHHALI 279

Query: 253 KNGPKNEIIVSAGALGSPQLLMLSG 277
           ++  + E+I+SAGALGSPQLL LSG
Sbjct: 280 RD--RGEVILSAGALGSPQLLFLSG 302

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/262 (46%), Positives = 170/262 (64%), Gaps = 6/262 (2%)

Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF+++AT  +    YDYII+GGGTAGCPLAATLS N SVL+LERG  P   PN+     F
Sbjct: 40  SFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISDGF 99

Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA   +  +TG  WD  
Sbjct: 100 VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMD 159

Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + FEP  + WQ+ +    +E G+LP NGF+ DHL GT++ G+ FD NG
Sbjct: 160 LVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDNNG 219

Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH + +LL   +P+ L + + A V K++F     +   A GV++ D+ G  H+A+++  
Sbjct: 220 TRHASDELLNKGDPNNLRVAVQAAVEKIIFS-SNTSGVTAIGVIYTDSNGTTHQAFVRG- 277

Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            + E+I+SAG +GSPQLL+LSG
Sbjct: 278 -EGEVILSAGPIGSPQLLLLSG 298

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1

 Score =  234 bits (596), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 123/272 (45%), Positives = 173/272 (63%), Gaps = 11/272 (4%)

Query: 13  TAALNYS---FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGN 69
           T+A ++S   F++NAT       YDYI+IGGGT+GCPLAATLS+   VLLLERG      
Sbjct: 31  TSAHDFSYLKFVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEY 90

Query: 70  PNITNLGSFGAALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVR 128
           PN      F   L       +P +RF+SEDG+ N RAR+LGG + +NAG Y RA   +  
Sbjct: 91  PNTLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYS 150

Query: 129 ETG--WDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKI 186
           +TG  WD  LVN++Y+WVE  +  +P  + WQS + +G +E G+LP NGF+ DH  GT++
Sbjct: 151 QTGIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRL 210

Query: 187 GGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA 246
            G+ FD NG RH A +LL   +P+ L + + A+V K+LF     +   A GV++ D+ G 
Sbjct: 211 TGSTFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFS-SNTSNLSAIGVIYTDSDGN 269

Query: 247 KHRAYLK-NGPKNEIIVSAGALGSPQLLMLSG 277
            H+A+++ NG   E+IVSAG +G+PQLL+LSG
Sbjct: 270 SHQAFVRGNG---EVIVSAGTIGTPQLLLLSG 298

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1

 Score =  234 bits (596), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 122/271 (45%), Positives = 172/271 (63%), Gaps = 9/271 (3%)

Query: 13  TAALNYS---FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGN 69
           T+A ++S   F+++A   +    YDYII+GGGTAGCPLAATLS N SVL+LERG  P   
Sbjct: 32  TSAHDFSYLEFVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEY 91

Query: 70  PNITNLGSFGAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVR 128
           PN+     F   L  +    +P +RF+S DG+ N R RVLGG S +NAG Y RA   +  
Sbjct: 92  PNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFN 151

Query: 129 ETG--WDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKI 186
           +TG  WD  LVN++Y WVE  + F+P  + WQ+      +EVG+LP NGF+ DHL GT++
Sbjct: 152 QTGIEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRL 211

Query: 187 GGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA 246
            G+ FD NG RH + +LL   +P+ L + +HA V K++F     +   A GV++ D+ G 
Sbjct: 212 TGSTFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFS-SDSSGVTAIGVIYTDSNGT 270

Query: 247 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            H+A+++     E+I+SAG +GSPQLL+LSG
Sbjct: 271 THQAFVRG--DGEVILSAGPIGSPQLLLLSG 299

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 7/262 (2%)

Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 40  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 99

Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct: 100 VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 159

Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct: 160 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 219

Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct: 220 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 276

Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            K E+IVSAG +G+PQLL+LSG
Sbjct: 277 -KGEVIVSAGTIGTPQLLLLSG 297

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. Has no oxidase activity. The redox properties of the FAD cofactor appear to be unimportant for catalysis.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1

 Score =  227 bits (579), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/261 (45%), Positives = 163/261 (62%), Gaps = 7/261 (2%)

Query: 20  FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFG 79
           F ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F 
Sbjct: 41  FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFV 100

Query: 80  AALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDERL 136
             L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  L
Sbjct: 101 YNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDL 160

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VN++Y+WVE  + F+P  + WQS      +E GV P +GF+ DH  GT+I G+ FD  G 
Sbjct: 161 VNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDNKGT 220

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  HRA++++  
Sbjct: 221 RHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHRAFVRS-- 276

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           K E+IVSAG +G+PQLL+LSG
Sbjct: 277 KGEVIVSAGTIGTPQLLLLSG 297

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1

 Score =  220 bits (560), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 6/261 (2%)

Query: 20  FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFG 79
           F++NA   +    YDYII+GGGT+GCPLAATLS N SVL+LERG      PN   +  F 
Sbjct: 42  FVYNAVDLELEGSYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVDGFA 101

Query: 80  AALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERL 136
             L       +P +RF+SEDG+ N R+R+LGG + +NAG Y RA   +   +G  WD  L
Sbjct: 102 YNLQQQDDGKTPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDL 161

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VNE+Y+WVE  + ++P  + WQS      +E GV P NGF   H  GT++ G+ FD +G 
Sbjct: 162 VNEAYEWVEDAIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDNSGT 221

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RH + +LL   +P  L + + A V K++F  +      A GVV+ D+ G  HRA +    
Sbjct: 222 RHASDELLNKGDPDNLKVAVEAAVQKIIFSTESSGL-TAVGVVYTDSNGTSHRALVSG-- 278

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           K E+I+SAG LG+PQLL+LSG
Sbjct: 279 KGEVILSAGTLGTPQLLLLSG 299

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 50/288 (17%)

Query: 27  AQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS-PYGNPNITNLGSFGAALS 83
           ++P   YD+I+IGGG+AG  +A+ LS+     VLL+E GG  P G    +   +F  +  
Sbjct: 59  SEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDI 118

Query: 84  DLSSTSPSQRFIS----EDGVINSRARVLGGGSCLNAGFYTRAAPYYVRET--------- 130
           D    +  +R       E      R +VLGG S +N   Y R      RE          
Sbjct: 119 DYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGN----REDYDDWAAQGN 174

Query: 131 -GWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNG-FTYDHLY-GTKIG 187
            GW  + V   ++  E  +  +    ++ +  + GL+ VG  PYN   +Y  L  G ++G
Sbjct: 175 PGWSYQDVLPFFKKSEDNLELDAVGTEYHA--KGGLLPVGKFPYNPPLSYALLKAGEEMG 232

Query: 188 GTIFDQNGQ--------RHTAADLLEYANP----------SGLTLLLHATVHKVLFRIKG 229
            ++ D NGQ        + TA + + Y++           + L +LL+ TV KVL     
Sbjct: 233 FSVQDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPGT 292

Query: 230 KARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           K      GV   D  G+  +  +K     E+IVS GA+ SPQ+L+LSG
Sbjct: 293 K---NVVGVEVSDQFGSMRKILVKK----EVIVSGGAVNSPQILLLSG 333

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 128/288 (44%), Gaps = 50/288 (17%)

Query: 27  AQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITN--LGSFGAAL 82
           ++P   YD+I+IGGG+AG  +A+ LS+     VLL+E GG       I +  L   G+ +
Sbjct: 59  SEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDI 118

Query: 83  SDLSSTSPSQRFI---SEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRET--------- 130
               +T P         E      R +VLGG S LN   Y R      RE          
Sbjct: 119 DYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGN----REDYDDWAADGN 174

Query: 131 -GWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYN-GFTYDHLY-GTKIG 187
            GW    V   ++  E  +  +    ++ +  + GL+ VG  PYN   +Y  L  G ++G
Sbjct: 175 PGWAYNDVLPFFKKSEDNLDLDEVGTEYHA--KGGLLPVGKFPYNPPLSYAILKAGEELG 232

Query: 188 GTIFDQNGQ--------RHTAADLLEYANP----------SGLTLLLHATVHKVLFRIKG 229
            ++ D NGQ        + TA + + Y++           + L +LL+ T  K+L     
Sbjct: 233 FSVHDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTATKILIHPHT 292

Query: 230 KARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           K      GV   D  G+  +  +    K E+++SAGA+ SP +L+LSG
Sbjct: 293 K---NVLGVEVSDQFGSTRKILV----KKEVVLSAGAVNSPHILLLSG 333

Essential for cuticular modification during development.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
255537255	548	glucose-methanol-choline (gmc) oxidoredu	0.949	0.479	0.844	1e-128
359474260	578	PREDICTED: protein HOTHEAD isoform 1 [Vi	0.949	0.455	0.817	1e-126
359474262	568	PREDICTED: protein HOTHEAD isoform 2 [Vi	0.949	0.463	0.817	1e-126
356514078	581	PREDICTED: protein HOTHEAD-like [Glycine	0.942	0.449	0.796	1e-124
356563226	581	PREDICTED: protein HOTHEAD-like [Glycine	0.942	0.449	0.796	1e-123
224053991	577	predicted protein [Populus trichocarpa]	0.938	0.450	0.811	1e-121
357481759	580	Choline dehydrogenase [Medicago truncatu	0.938	0.448	0.775	1e-119
357481761	580	Choline dehydrogenase [Medicago truncatu	0.938	0.448	0.779	1e-119
449495903	580	PREDICTED: protein HOTHEAD-like [Cucumis	0.942	0.45	0.766	1e-116
449452496	578	PREDICTED: protein HOTHEAD-like [Cucumis	0.942	0.451	0.766	1e-116

>gi|255537255|ref|XP_002509694.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223549593|gb|EEF51081.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/263 (84%), Positives = 240/263 (91%)

Query: 15  ALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN 74
           A NYSF+ +AT+A P SYYDYII+GGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN
Sbjct: 32  APNYSFVKDATSAPPTSYYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN 91

Query: 75  LGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
           L +FGAALSD S TSPSQRFISEDGVIN+RARVLGGGSCLNAGFYTRA+  YVR  GWD 
Sbjct: 92  LANFGAALSDPSPTSPSQRFISEDGVINARARVLGGGSCLNAGFYTRASTAYVRTVGWDG 151

Query: 135 RLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQN 194
           RLVNESYQWVEK+VAFEP MRQWQ+AVRDGL+E GVLP NGFTYDH  GTK+GGTIFDQ+
Sbjct: 152 RLVNESYQWVEKIVAFEPIMRQWQTAVRDGLLEAGVLPNNGFTYDHFNGTKVGGTIFDQD 211

Query: 195 GQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKN 254
           G RH+AADLL YANPSGLT+LLHA VHK+LFR +GKARP AHGVVFRDA+GAKHRAYLK 
Sbjct: 212 GHRHSAADLLYYANPSGLTVLLHAPVHKILFRTQGKARPMAHGVVFRDASGAKHRAYLKR 271

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
           GPKNEIIVSAGALGSPQLLM+SG
Sbjct: 272 GPKNEIIVSAGALGSPQLLMISG 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/263 (81%), Positives = 235/263 (89%)

Query: 15  ALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN 74
           A NYSFMH AT+A  +SYYDYII+GGGTAGCPLAATLSQN SVLLLERGG+PYGNPNITN
Sbjct: 29  APNYSFMHQATSAPAISYYDYIIVGGGTAGCPLAATLSQNYSVLLLERGGAPYGNPNITN 88

Query: 75  LGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
           LGSFGA  SD S TSPSQRF+SEDGVIN+RARVLGGGSCLNAGFYTRA P YV E GWD 
Sbjct: 89  LGSFGAPFSDFSPTSPSQRFVSEDGVINARARVLGGGSCLNAGFYTRAGPDYVEEVGWDS 148

Query: 135 RLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQN 194
            +V ESY+WVEKVVAF+PPMRQWQSAVRDGL+EVGVLPYNGFTYDH+YGTKIGGTIFD +
Sbjct: 149 GMVKESYEWVEKVVAFKPPMRQWQSAVRDGLLEVGVLPYNGFTYDHIYGTKIGGTIFDPD 208

Query: 195 GQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKN 254
           G RHTAADLL+YANP+GLT+LLHATVHK+ FR +GK RP AHGV+FRD  G KH+AYLK 
Sbjct: 209 GHRHTAADLLQYANPTGLTVLLHATVHKITFRRRGKVRPVAHGVIFRDVLGKKHKAYLKR 268

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
             KNEIIVS+GALGSPQLLMLSG
Sbjct: 269 DSKNEIIVSSGALGSPQLLMLSG 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/263 (81%), Positives = 235/263 (89%)

Query: 15  ALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN 74
           A NYSFMH AT+A  +SYYDYII+GGGTAGCPLAATLSQN SVLLLERGG+PYGNPNITN
Sbjct: 29  APNYSFMHQATSAPAISYYDYIIVGGGTAGCPLAATLSQNYSVLLLERGGAPYGNPNITN 88

Query: 75  LGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
           LGSFGA  SD S TSPSQRF+SEDGVIN+RARVLGGGSCLNAGFYTRA P YV E GWD 
Sbjct: 89  LGSFGAPFSDFSPTSPSQRFVSEDGVINARARVLGGGSCLNAGFYTRAGPDYVEEVGWDS 148

Query: 135 RLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQN 194
            +V ESY+WVEKVVAF+PPMRQWQSAVRDGL+EVGVLPYNGFTYDH+YGTKIGGTIFD +
Sbjct: 149 GMVKESYEWVEKVVAFKPPMRQWQSAVRDGLLEVGVLPYNGFTYDHIYGTKIGGTIFDPD 208

Query: 195 GQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKN 254
           G RHTAADLL+YANP+GLT+LLHATVHK+ FR +GK RP AHGV+FRD  G KH+AYLK 
Sbjct: 209 GHRHTAADLLQYANPTGLTVLLHATVHKITFRRRGKVRPVAHGVIFRDVLGKKHKAYLKR 268

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
             KNEIIVS+GALGSPQLLMLSG
Sbjct: 269 DSKNEIIVSSGALGSPQLLMLSG 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 239/261 (91%)

Query: 17  NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
           NY+FMHNAT A  VSYYDYI+IGGGTAGCPLAATLSQN SVLLLERGGSPYGNPNI++L 
Sbjct: 30  NYTFMHNATTAPDVSYYDYIVIGGGTAGCPLAATLSQNYSVLLLERGGSPYGNPNISDLA 89

Query: 77  SFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERL 136
           +FGAALSD S TSP+QRFISEDGVINSRARVLGGGSCLNAGFYTRA+P YVRE GWD R+
Sbjct: 90  AFGAALSDTSPTSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPQYVREAGWDGRV 149

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VNESY+WVEK+VAFEP ++QWQS+VRDGL+E+GV+P NGFTYDH+ GTK+GGTIFDQNG 
Sbjct: 150 VNESYEWVEKIVAFEPQLKQWQSSVRDGLIEIGVVPNNGFTYDHIDGTKVGGTIFDQNGF 209

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RHTAADLL+YA P+G+TLLL ATVH++LFR+K +++P AHGVVFRD+ G +H+AYLK  P
Sbjct: 210 RHTAADLLQYAKPTGITLLLDATVHRILFRVKDRSKPMAHGVVFRDSLGRRHKAYLKPDP 269

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           +NEIIVSAGALGSPQLLMLSG
Sbjct: 270 RNEIIVSAGALGSPQLLMLSG 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563226|ref|XP_003549865.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 236/261 (90%)

Query: 17  NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
           NY+FMHNAT A  VSYYDYI+IGGGTAGCPLAATLSQN SVLLLERGGSPYGNPNI++L 
Sbjct: 30  NYTFMHNATTAPDVSYYDYIVIGGGTAGCPLAATLSQNYSVLLLERGGSPYGNPNISDLA 89

Query: 77  SFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERL 136
           +FGAALSD S TSP+QRFISEDGVINSRARVLGGGSCLNAGFYTRA+P YVRE GWD R 
Sbjct: 90  AFGAALSDTSPTSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPQYVREAGWDGRA 149

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VNESY+WVEK+VAFEP ++QWQSAVRDGL+E+GV+P NGFTYDH+ GTK+GGTIFDQNG 
Sbjct: 150 VNESYEWVEKIVAFEPQLKQWQSAVRDGLIEIGVVPNNGFTYDHIDGTKVGGTIFDQNGF 209

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RHTAADLLEYA P+G+T+LL ATVH++LFR+K  ++P AHGVVFRD+ G +H+ YLK  P
Sbjct: 210 RHTAADLLEYAKPTGITVLLDATVHRILFRVKEGSKPTAHGVVFRDSLGGRHKVYLKADP 269

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           +NEIIVSAGALGSPQLLMLSG
Sbjct: 270 RNEIIVSAGALGSPQLLMLSG 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1129), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/260 (81%), Positives = 231/260 (88%)

Query: 18  YSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 77
           YSFM NAT+A  +SYYDYII+GGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNL  
Sbjct: 31  YSFMLNATSAPTISYYDYIIVGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLAK 90

Query: 78  FGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLV 137
           FGAALSD S TSPSQRFISEDGVIN+RARVLGGGSCLNAGFYTRA+P Y+R  GWD RL 
Sbjct: 91  FGAALSDPSPTSPSQRFISEDGVINARARVLGGGSCLNAGFYTRASPEYIRAAGWDGRLA 150

Query: 138 NESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQR 197
           NESYQWVE+ VAFEP M  WQSAVRDGL+E GVLP NGFTYDH+ GTK+GGTIFD+ G R
Sbjct: 151 NESYQWVERRVAFEPQMGPWQSAVRDGLLEAGVLPNNGFTYDHIKGTKVGGTIFDRAGNR 210

Query: 198 HTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPK 257
           HTAADLLEYANP GLT+LLHATV+K+LF  K + +P AHGVV+RDA+GAKHRAYLK G K
Sbjct: 211 HTAADLLEYANPGGLTVLLHATVYKILFATKARPKPVAHGVVYRDASGAKHRAYLKRGLK 270

Query: 258 NEIIVSAGALGSPQLLMLSG 277
           NEII+S+GALGSPQLLMLSG
Sbjct: 271 NEIIISSGALGSPQLLMLSG 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481759|ref|XP_003611165.1| Choline dehydrogenase [Medicago truncatula] gi|355512500|gb|AES94123.1| Choline dehydrogenase [Medicago truncatula]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/263 (77%), Positives = 233/263 (88%), Gaps = 3/263 (1%)

Query: 18  YSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 77
           YSFM +AT+A  +SYYDYII+GGGTAGCPLAATLSQN  VL+LERGGSPYGNPNITNL +
Sbjct: 33  YSFMQDATSAPIISYYDYIIVGGGTAGCPLAATLSQNHRVLVLERGGSPYGNPNITNLSA 92

Query: 78  FGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLV 137
           +G  LSD S +SP+QRFISEDGVINSRARVLGGGSCLNAGFYTRA+P YVRE GWD +LV
Sbjct: 93  YGVPLSDTSPSSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPRYVREAGWDGKLV 152

Query: 138 NESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQR 197
           NESY+WVE+VVAF P MRQWQSAVRDGL+EVGVLPYNGFTYDH++GTK+GGTIFD NG R
Sbjct: 153 NESYKWVERVVAFRPSMRQWQSAVRDGLLEVGVLPYNGFTYDHIHGTKVGGTIFDHNGHR 212

Query: 198 HTAADLLEYANPSGLTLLLHATVHKVLF---RIKGKARPQAHGVVFRDATGAKHRAYLKN 254
           HTAADLLEYAN + +TLLLHATVH++LF   + +  +RP AHGV+++DA G +HRAYL +
Sbjct: 213 HTAADLLEYANTNTITLLLHATVHRILFTTHKERSNSRPVAHGVLYKDARGTEHRAYLNH 272

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
           G KNEIIVSAGALGSPQLLMLSG
Sbjct: 273 GTKNEIIVSAGALGSPQLLMLSG 295

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481761|ref|XP_003611166.1| Choline dehydrogenase [Medicago truncatula] gi|355512501|gb|AES94124.1| Choline dehydrogenase [Medicago truncatula]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 236/263 (89%), Gaps = 3/263 (1%)

Query: 18  YSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 77
           YSFM +AT+A  +S+YDYIIIGGGTAGCPLAATLS+N  VL+LERGGSPYGNPNITNL +
Sbjct: 33  YSFMQDATSAPIISFYDYIIIGGGTAGCPLAATLSKNHRVLVLERGGSPYGNPNITNLSA 92

Query: 78  FGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLV 137
           FG ALSD S +SP+QRFISEDGVINSRARVLGGGSCLNAGFYTRA+P YV E  WDE+LV
Sbjct: 93  FGVALSDPSPSSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPRYVSEAEWDEKLV 152

Query: 138 NESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQR 197
           +ESY+WVE+VVAF+PPMRQWQSAVRDGL+EVGVLPYNGFTYDH++GTK+GGTIFD NG R
Sbjct: 153 DESYKWVERVVAFQPPMRQWQSAVRDGLLEVGVLPYNGFTYDHIHGTKVGGTIFDHNGHR 212

Query: 198 HTAADLLEYANPSGLTLLLHATVHKVLF-RIKG--KARPQAHGVVFRDATGAKHRAYLKN 254
           HTAADLLEYAN + +TLLLHATVH++LF + KG   ++P AHGV+++DA G +HRAYL +
Sbjct: 213 HTAADLLEYANTNTITLLLHATVHRILFTKSKGGLSSKPIAHGVLYKDARGTEHRAYLNH 272

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
           G KNEIIVSAGALGSPQLLMLSG
Sbjct: 273 GTKNEIIVSAGALGSPQLLMLSG 295

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495903|ref|XP_004159980.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/261 (76%), Positives = 226/261 (86%)

Query: 17  NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
            +SF+ NAT A  VSYYDYII+GGGTAGCPLAATLS+   VL+LERGGSPYGNPNITNL 
Sbjct: 31  KFSFLRNATDAPTVSYYDYIIVGGGTAGCPLAATLSKKYKVLVLERGGSPYGNPNITNLS 90

Query: 77  SFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERL 136
           +FGAALSDLS++SPSQRF+SEDGVINSRARVLGGGSCLNAGFYTRA+P YVR  GW+ +L
Sbjct: 91  AFGAALSDLSASSPSQRFVSEDGVINSRARVLGGGSCLNAGFYTRASPDYVRRAGWEGKL 150

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VNESY+WVE+VVAFEPPM +WQSAVRDGL+E GV P NGFTYDHLYGTK+GGTIFD +G 
Sbjct: 151 VNESYEWVERVVAFEPPMGEWQSAVRDGLIEAGVKPNNGFTYDHLYGTKVGGTIFDHHGH 210

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RHTAADLL YANPS L +LL+AT   ++F   GK RP+AHGVVF D+ G KHRAYLK G 
Sbjct: 211 RHTAADLLSYANPSNLNVLLYATARSIIFPSLGKRRPKAHGVVFEDSKGIKHRAYLKYGS 270

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           K+EII+SAG LGSPQLLMLSG
Sbjct: 271 KSEIIISAGCLGSPQLLMLSG 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452496|ref|XP_004143995.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/261 (76%), Positives = 226/261 (86%)

Query: 17  NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
            +SF+ NAT A  VSYYDYII+GGGTAGCPLAATLS+   VL+LERGGSPYGNPNITNL 
Sbjct: 31  KFSFLRNATDAPTVSYYDYIIVGGGTAGCPLAATLSKKYKVLVLERGGSPYGNPNITNLS 90

Query: 77  SFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERL 136
           +FGAALSDLS++SPSQRF+SEDGVINSRARVLGGGSCLNAGFYTRA+P YVR  GW+ +L
Sbjct: 91  AFGAALSDLSASSPSQRFVSEDGVINSRARVLGGGSCLNAGFYTRASPDYVRRAGWEGKL 150

Query: 137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
           VNESY+WVE+VVAFEPPM +WQSAVRDGL+E GV P NGFTYDHLYGTK+GGTIFD +G 
Sbjct: 151 VNESYEWVERVVAFEPPMGEWQSAVRDGLIEAGVKPNNGFTYDHLYGTKVGGTIFDHHGH 210

Query: 197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGP 256
           RHTAADLL YANPS L +LL+AT   ++F   GK RP+AHGVVF D+ G KHRAYLK G 
Sbjct: 211 RHTAADLLSYANPSNLNVLLYATARSIIFPSLGKRRPKAHGVVFEDSKGIKHRAYLKYGS 270

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
           K+EII+SAG LGSPQLLMLSG
Sbjct: 271 KSEIIISAGCLGSPQLLMLSG 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2034705	572	AT1G12570 [Arabidopsis thalian	0.949	0.459	0.752	1.9e-106
TAIR|locus:2173068	586	AT5G51950 [Arabidopsis thalian	0.938	0.443	0.653	1.5e-90
TAIR|locus:2078441	577	AT3G56060 [Arabidopsis thalian	0.942	0.452	0.623	1.8e-87
TAIR|locus:2032627	594	HTH "HOTHEAD" [Arabidopsis tha	0.888	0.414	0.607	1.4e-80
TAIR|locus:2173053	582	AT5G51930 [Arabidopsis thalian	0.963	0.458	0.587	2.6e-79
TAIR|locus:2032642	552	AT1G73050 [Arabidopsis thalian	0.920	0.461	0.535	1.6e-70
TAIR|locus:2035830	501	AT1G14190 [Arabidopsis thalian	0.906	0.500	0.496	5.4e-63
TAIR|locus:505006121	503	AT1G14185 [Arabidopsis thalian	0.971	0.534	0.469	1.1e-62
UNIPROTKB|Q945K2	563	MDL2 "(R)-mandelonitrile lyase	0.920	0.452	0.446	9.6e-57
ASPGD|ASPL0000014551	555	AN3531 [Emericella nidulans (t	0.382	0.190	0.406	1.3e-15

TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 198/263 (75%), Positives = 223/263 (84%)

Query:    15 ALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITN 74
             A NYSFM +AT +   SYYDYIIIGGGTAGCPLAATLSQNASVLLLERG SPY NPNIT 
Sbjct:    28 APNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGDSPYNNPNITR 87

Query:    75 LGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
             L +FGAALSDLS +SPSQRF+SEDGVIN+RARVLGGGS LNAGFYTRA   YVR  GWD 
Sbjct:    88 LSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVRNMGWDG 147

Query:   135 RLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQN 194
              L NESYQWVE  VAF+PPM +WQ+AVRDGL+E G++P NGFTYDH+ GTK GGTIFD+N
Sbjct:   148 ALANESYQWVEAKVAFQPPMGRWQTAVRDGLLEAGIVPNNGFTYDHINGTKFGGTIFDRN 207

Query:   195 GQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKN 254
             G RHTAADLLEYA+P G+T+LLHATVH++LFR +G  +P A+GVV+RD TG  HRAYLK 
Sbjct:   208 GNRHTAADLLEYADPKGITVLLHATVHRILFRTRGTTKPIANGVVYRDRTGQAHRAYLKE 267

Query:   255 GPKNEIIVSAGALGSPQLLMLSG 277
             G  +EII+SAG LGSPQLLMLSG
Sbjct:   268 GALSEIILSAGTLGSPQLLMLSG 290

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 170/260 (65%), Positives = 205/260 (78%)

Query:    18 YSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 77
             YSFM +AT A   + +DYIIIGGGT+GC LAATLSQNASVL+LERGG+PY NP  T++ +
Sbjct:    31 YSFMKDATLAPMFARFDYIIIGGGTSGCALAATLSQNASVLVLERGGAPYDNPTATDIEN 90

Query:    78 FGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLV 137
             F   LS+ S  S SQ FISEDGV N+RARVLGGGS LNAGFYTRA   YV+ET W    V
Sbjct:    91 FATTLSNTSPKSWSQLFISEDGVYNTRARVLGGGSVLNAGFYTRAGDEYVKETEWKTDEV 150

Query:   138 NESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQR 197
               +Y+WVEK VAF+PP+  WQ+A +DGL+E G  PYNGFTYDH+YGTKIGGTIFD+ G R
Sbjct:   151 EAAYEWVEKKVAFQPPVLGWQTAFKDGLLEAGEFPYNGFTYDHIYGTKIGGTIFDRAGHR 210

Query:   198 HTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPK 257
             HTAADLLEYANP  + + LHA+VHK+LF  KG+ RP+A+GV+F+DA G  H+A L+    
Sbjct:   211 HTAADLLEYANPGNIVVYLHASVHKILFTTKGRPRPKAYGVIFQDANGVLHKAELEKNSM 270

Query:   258 NEIIVSAGALGSPQLLMLSG 277
             NE+I+SAGA+GSPQLLMLSG
Sbjct:   271 NEVILSAGAIGSPQLLMLSG 290

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 164/263 (62%), Positives = 208/263 (79%)

Query:    17 NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
             NY FM +AT A  +S++DYIIIGGGTAGC LAATLSQNA+VL+LERGGSPY +P  T++G
Sbjct:    30 NYRFMKDATLAPKLSHFDYIIIGGGTAGCALAATLSQNATVLVLERGGSPYDDPAATDIG 89

Query:    77 SFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERL 136
             +F   L +++  S SQ FISEDGV NSRARVLGGG+ +NAGFY+RA   +V E GW+   
Sbjct:    90 NFANTLLNITPNSWSQLFISEDGVFNSRARVLGGGTVINAGFYSRAEEDFVAEAGWERDE 149

Query:   137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
             V  +Y+WVEK V FEPP+ +WQSA RDGL+E GV PYNGFTY+H+ GTK GGTIFD++G 
Sbjct:   150 VEAAYEWVEKKVVFEPPVNKWQSAFRDGLLEAGVTPYNGFTYEHIVGTKFGGTIFDRDGH 209

Query:   197 RHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYL--KN 254
             RHTAA+LLEYANP+ + + LHA+VHK+LF IKG  RP+A+GV+F DA G  ++A L  ++
Sbjct:   210 RHTAANLLEYANPNMIVVYLHASVHKILFTIKGNQRPKAYGVIFLDANGVSYKAELATQD 269

Query:   255 GPKNEIIVSAGALGSPQLLMLSG 277
                +E+I+SAGA+ SPQLLMLSG
Sbjct:   270 STMSEVILSAGAIASPQLLMLSG 292

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 150/247 (60%), Positives = 194/247 (78%)

Query:    31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
             S YDYI+IGGGTAGCPLAATLSQN SVL+LERGG P+ N N++ L +F   L+D+S++S 
Sbjct:    61 SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120

Query:    91 SQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAF 150
             SQ F+S DGV N+RARVLGGGSC+NAGFY+RA   +V+  GWD +LV ESY WVE+ +  
Sbjct:   121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query:   151 EPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPS 210
             +P +  WQ A+RD L+EVGV P+NGFTYDH+ GTKIGGTIFD+ G+RHTAA+LL YANP 
Sbjct:   181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query:   211 GLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 270
              L +L++ATV K++F   G  RP+  GV+F+D  G +H+A L N   +E+I+S+GA+GSP
Sbjct:   241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299

Query:   271 QLLMLSG 277
             Q+LMLSG
Sbjct:   300 QMLMLSG 306

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0046593 "mandelonitrile lyase activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010430 "fatty acid omega-oxidation" evidence=IMP

TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 161/274 (58%), Positives = 198/274 (72%)

Query:     5 LYTSLFVY-TAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERG 63
             +Y S+F +    L  +FM +AT A   + +DYIIIGGGTAGC LAATLSQNASVL+LERG
Sbjct:    44 VYISIFFFFLVKLETTFMKDATLAPKNASFDYIIIGGGTAGCALAATLSQNASVLVLERG 103

Query:    64 GSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAA 123
             GSPY NP  T++G+    L + +  S SQ FISEDGV N+R RVLGGGS +N GFY+RA 
Sbjct:   104 GSPYENPTATDMGNSVNTLLNNTPNSWSQLFISEDGVYNTRPRVLGGGSVINGGFYSRAG 163

Query:   124 PYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYG 183
               YV E  W+   V  +Y+WVEK + FEP + +WQ A +DGL+E G  P NGFTYDH+YG
Sbjct:   164 NDYVEEAEWEMEEVEAAYEWVEKKLVFEPQVIEWQKAFKDGLLEAGESPDNGFTYDHIYG 223

Query:   184 TKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA 243
             TKIGGTIFD+ G RHTAA+LLEYANP+ + + LHA+VHKVLF        +A+ V+F DA
Sbjct:   224 TKIGGTIFDRAGHRHTAANLLEYANPNRIVVYLHASVHKVLFTT------EAYEVLFEDA 277

Query:   244 TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
              G  H+A L N   NE+I+SAGALGSPQLLMLSG
Sbjct:   278 NGVFHKANLANKATNEVILSAGALGSPQLLMLSG 311

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 142/265 (53%), Positives = 187/265 (70%)

Query:    20 FMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFG 79
             F+ NAT      YYDYII+GGGTAGCPLAATLSQ+  VLLLERGG PY  PN+ +   F 
Sbjct:    41 FISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFL 100

Query:    80 AALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERL 136
               L+D+++  SP+Q FISE+GV N+R RVLGG S +NAGFY+RA   +   +G  WD   
Sbjct:   101 TTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSS 160

Query:   137 VNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQ 196
             VN+SY+WVE+ + F P +R WQ+A+RD L+EVGV P+NGFT +H  GTKIGG+ FD+ G+
Sbjct:   161 VNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGR 220

Query:   197 RHTAADLLEYANPSGLTLLLHATVHKVLFR----IKGKARPQAHGVVFRDATGAKHRAYL 252
             RH++ADLL YA  S + + ++ATV +VL      + G +   A GVV+RD  G  H A +
Sbjct:   221 RHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSG-SNVSAIGVVYRDQLGRFHHALI 279

Query:   253 KNGPKNEIIVSAGALGSPQLLMLSG 277
             ++  + E+I+SAGALGSPQLL LSG
Sbjct:   280 RD--RGEVILSAGALGSPQLLFLSG 302

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=TAS

GO:0046202 "cyanide biosynthetic process" evidence=TAS

TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 128/258 (49%), Positives = 180/258 (69%)

Query:    25 TAAQPVS--YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAAL 82
             T A+ VS   +DYI++GGGTAGC LAATLS+  SVL++ERGGSP+G+P +     FG +L
Sbjct:     6 TDAKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEERKYFGYSL 65

Query:    83 SDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESY 141
              +    +S +Q F S DG+ N R RVLGG S +N GFY+RA+  +V++ GWD+ LV ESY
Sbjct:    66 LNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRASDEFVKKAGWDKGLVQESY 125

Query:   142 QWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAA 201
             +WVE  V F P + QWQS V+ G +E G  PYNG++ +H  GTKIGG+I+DQ G+RHT+A
Sbjct:   126 KWVESKVVFMPELTQWQSVVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIYDQCGKRHTSA 185

Query:   202 DLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKN--E 259
             DLL +  P+ +T+LL+ TV  ++F    K R  A GV F ++ G   ++Y  +  ++  E
Sbjct:   186 DLLGFGKPNCITVLLNTTVKSIIFDSSNKTR--AVGVRFMESDGNSSKSYKVHVEQHRGE 243

Query:   260 IIVSAGALGSPQLLMLSG 277
             +I++AGALGSPQ+L+LSG
Sbjct:   244 VILAAGALGSPQILLLSG 261

GO:0005634 "nucleus" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 132/281 (46%), Positives = 190/281 (67%)

Query:     6 YTSLFVYTAALNYS----FMHNATAAQPVS--YYDYIIIGGGTAGCPLAATLSQNASVLL 59
             +  LF+ +  +N S      +  T  + VS   +DYI++GGGTAGC LAATLS+  SVL+
Sbjct:     4 FVFLFIISMFINLSQGAQMPYMTTDPKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLV 63

Query:    60 LERGGSPYGNPNITNLGSFGAALSDLSS-TSPSQRFISEDGVINSRARVLGGGSCLNAGF 118
             +ERGGSP+G+P + +   +G +L +    +S +Q F S DG+ N R RVLGG S +N GF
Sbjct:    64 IERGGSPFGDPLVEDKKYYGYSLINTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAINGGF 123

Query:   119 YTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTY 178
             Y+RA+  +V++ GWD+ LV ESY+WVE  V F P + +WQS V+ G +E G  PYNG++ 
Sbjct:   124 YSRASDEFVKKAGWDKDLVQESYKWVESKVVFMPELTRWQSIVQFGFLEAGFYPYNGYSL 183

Query:   179 DHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGV 238
             +H  GTKIGG+IFDQ G+RHT+ADLL Y  P+ +T+LL+ATV  ++F    K R  A GV
Sbjct:   184 EHTQGTKIGGSIFDQCGKRHTSADLLGYGKPNCITVLLNATVKSIIFDAN-KTR--AVGV 240

Query:   239 VFRDATGAKHRAYLKNGPKN--EIIVSAGALGSPQLLMLSG 277
              F ++ G   ++Y  +  ++  E+I++AGALGSPQ+L+LSG
Sbjct:   241 RFMESDGNSSKSYKVHVEQHRGEVILAAGALGSPQILLLSG 281

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 117/262 (44%), Positives = 165/262 (62%)

Query:    19 SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
             SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct:    40 SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 99

Query:    79 GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
                L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct:   100 VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 159

Query:   136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
             LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct:   160 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 219

Query:   196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
              RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct:   220 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 276

Query:   256 PKNEIIVSAGALGSPQLLMLSG 277
              K E+IVSAG +G+PQLL+LSG
Sbjct:   277 -KGEVIVSAGTIGTPQLLLLSG 297

GO:0046593 "mandelonitrile lyase activity" evidence=TAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0050898 "nitrile metabolic process" evidence=TAS

ASPGD|ASPL0000014551 AN3531 [Emericella nidulans (taxid:162425)]

 Score = 163 (62.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 48/118 (40%), Positives = 66/118 (55%)

Query:    32 YYDYIIIGGGTAGCPLAATLSQ-NAS--VLLLERGGSPYGNPNITN--LGSFGAALS--D 84
             +YDYIIIGGG AGC LA  L++ N S  +L++E G +  G+  +T   L  FGA  S  D
Sbjct:     5 HYDYIIIGGGLAGCTLAGRLAEKNRSLQILIIEAGPNVAGH-TLTEYPLACFGAHFSPLD 63

Query:    85 LSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA-APYYVRETGWDERLVNESY 141
              + T+  Q  +      NS A+ LGGGS +N G +TR  A  Y R   W   + +ES+
Sbjct:    64 WAYTTVPQTHLDNRMCYNSAAKALGGGSAINYGTWTRGNAADYDR---WAAMVDDESW 118

GO:0047833 "D-sorbitol dehydrogenase (acceptor) activity" evidence=RCA

GO:0006060 "sorbitol metabolic process" evidence=RCA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	1e-137
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	1e-18
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	9e-15
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-10
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	2e-10
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	4e-10
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-05
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	2e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.001
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	0.002
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	0.002
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.002
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.004
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.004

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score =  398 bits (1024), Expect = e-137
 Identities = 155/245 (63%), Positives = 199/245 (81%), Gaps = 1/245 (0%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQ 92
           YDYI++GGGTAGCPLAATLSQN SVLLLERGG P+GN N++ L +F   L+D S TS SQ
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSASQ 115

Query: 93  RFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEP 152
            FIS DGVIN+RARVLGGG+C+NAGFY+RA+  ++++ GWD +LVNESY WVE+ +   P
Sbjct: 116 AFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWP 175

Query: 153 PMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGL 212
            +  WQ+A+RD L+EVGV P+NGFTYDH+YGTK+GGTIFD+ G+RHTAA+LL   NP+ L
Sbjct: 176 KVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKL 235

Query: 213 TLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 272
            +LLHATV K++F   GK RP+A GV+F+D  G +H+A+L N   +EII+SAGA+GSPQ+
Sbjct: 236 RVLLHATVQKIVFDTSGK-RPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQM 294

Query: 273 LMLSG 277
           L+LSG
Sbjct: 295 LLLSG 299

Length = 587

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 72/281 (25%), Positives = 106/281 (37%), Gaps = 49/281 (17%)

Query: 33  YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSST--- 88
           YDY+I+G G+AG  LAA LS    SVL+LE GG     P I    ++   ++        
Sbjct: 8   YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDR-RPLIQMPAAYAFLMNGPRYDWGF 66

Query: 89  -SPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP-------YYVRETGWD------- 133
            +  +  +    +   R +VLGG S +N   Y R  P             GW        
Sbjct: 67  RTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPY 126

Query: 134 ----ERLV----NESYQWVEKV--VAFEPPMRQW--QSAVRDGLVEVGVLPYNGFTYDHL 181
               E L+     +   W      +   PP        A  +   ++G       T D  
Sbjct: 127 FKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPT----TPDPN 182

Query: 182 YGTKIGGTIFDQ---NGQRHTA--ADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAH 236
              + G   +     NG+R +A  A L        LTLL  A V ++L          A 
Sbjct: 183 GADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDR-----AV 237

Query: 237 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           GV      G      +      E++++AGA+ SP+LL+LSG
Sbjct: 238 GVEVEIGDGGTIETAVAAR---EVVLAAGAINSPKLLLLSG 275

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 73.4 bits (180), Expect = 9e-15
 Identities = 83/283 (29%), Positives = 119/283 (42%), Gaps = 58/283 (20%)

Query: 34  DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGS-----FGAALSDLS 86
           DYIIIGGG+AG  LA  LS+  + SVL+LE GGS Y    +  + +      G    +  
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 87  STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPY----YVRETG---WDERLVNE 139
             +  +  ++   V ++R +VLGG S +N   Y R  P     + +  G   WD      
Sbjct: 61  YETEPEPHMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLP 120

Query: 140 SYQWVEKVVAFEPPMRQWQSAVR-----------DGLVEVGVLP-------YNGFTYDHL 181
            Y+ +E     E P R     ++              +E GV          NGF  +  
Sbjct: 121 YYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQE-- 178

Query: 182 YGTKIGGTIFDQ---NGQRHTAADLLEYANPS----GLTLLLHATVHKVLFRIKGKARPQ 234
                G    D    NG+R +AA    Y +P+     L +   A V K+ F        +
Sbjct: 179 -----GFGPMDSTVHNGRRVSAAR--AYLHPAMKRPNLEVQTRAFVTKINFEGN-----R 226

Query: 235 AHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           A GV F+     +H    K     E+I+SAGA+ SPQLL LSG
Sbjct: 227 ATGVEFKKGGRKEHTEANK-----EVILSAGAINSPQLLQLSG 264

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 16/88 (18%)

Query: 194 NGQRHTAADLLEYANP----SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHR 249
           NG+R +AA    Y +P      LT++ HA   ++LF  +GK   +A GV +    G +  
Sbjct: 196 NGRRWSAAR--AYLDPALKRPNLTIVTHALTDRILF--EGK---RAVGVEYERGGGRETA 248

Query: 250 AYLKNGPKNEIIVSAGALGSPQLLMLSG 277
                  + E+I+SAGA+ SPQLL LSG
Sbjct: 249 RA-----RREVILSAGAINSPQLLQLSG 271

Length = 560

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 70/281 (24%), Positives = 109/281 (38%), Gaps = 55/281 (19%)

Query: 34  DYIIIGGGTAGCPLAATLSQN--ASVLLLERG---GSPYGNPNITNLG---SFGAALSDL 85
           D +++GGG+AGC +AA LS++   +V +LE G     P   P     G     G A S +
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPA-SPV 60

Query: 86  SSTSPSQRFISEDGVINS---RARVLGGGSCLNAGFYTRAAPYYVR---ETGWDERLVNE 139
                 +  +++     S   R RVLGG   +N G++ RA P         GW    V  
Sbjct: 61  VWRYGVE--LTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDDVLP 118

Query: 140 SYQWVEKVVAFEPPM-------------------RQWQSAVRD-GLVEVGVLPYNGFTYD 179
            ++ +E  + F+ P+                     + +A    G   +  L  NG   D
Sbjct: 119 HFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADL--NGSGPD 176

Query: 180 HLYGTKIGGTIFDQNGQRHT---AADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAH 236
              G  +G    + +G R      A LL       LT+     V ++LF        +A 
Sbjct: 177 APTG--VGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFS-----GTRAV 229

Query: 237 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           GV      G            + +++ AGA+ S  LL+LSG
Sbjct: 230 GVEVLGD-GGPRTLR-----ADRVVLCAGAVESAHLLLLSG 264

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 45/194 (23%), Positives = 64/194 (32%), Gaps = 35/194 (18%)

Query: 104 RARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFEPPMRQ 156
               +GGGS +N     R     + E        GW           VE  +       +
Sbjct: 23  AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLGVTTKGIE 82

Query: 157 -------WQSAVRDGLVEVGVLP--YNGFTYD--HLYGTKIGGTIFDQNGQRHTAAD-LL 204
                     A  +    V  +P   NG  Y      G           G + + A   L
Sbjct: 83  ESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLGCP--------TGAKQSTARTWL 134

Query: 205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVS 263
             A    L +L  A   K++   +G    +A GV  RD   G K           E++V+
Sbjct: 135 RPALERNLRILTGAKAEKIIILGRGG---RAVGVEARDGGGGIKRLITAAK----EVVVA 187

Query: 264 AGALGSPQLLMLSG 277
           AGAL +P LL+ SG
Sbjct: 188 AGALNTPPLLLRSG 201

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 19/102 (18%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSF---GAALSDLSS 87
           YDYIIIG G+AGC LA  LS++   SVLLLE GG  Y          F    AAL+    
Sbjct: 6   YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDY------RWDFFIQMPAALAFPLQ 59

Query: 88  TSP-SQRFISE-----DG--VINSRARVLGGGSCLNAGFYTR 121
               +  + +E     +   +   R +VLGG S +N   Y R
Sbjct: 60  GKRYNWAYETEPEPHMNNRRMECPRGKVLGGSSSINGMVYIR 101

Length = 560

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPN 71
          YD +I+G G AG   A  L++    VL+LE+G  P G   
Sbjct: 4  YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-GAKP 42

Length = 396

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLS-QNASVLLLER 62
          YD II+GG  AG  LA  LS Q   VL+LER
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 32 YYDYIIIGGGTAGCPLAATLSQN-ASVLLLERG--------GSPYGNPNITNLGSFGAAL 82
           +D IIIGGG AG   A + ++    VLL+++G         S  G  N TN  +    L
Sbjct: 3  RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFL 62

Query: 83 S 83
          S
Sbjct: 63 S 63

Length = 408

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP 66
          YD +++G G AG   A  L+     VLLLE+   P
Sbjct: 1  YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
          YD I+IG G AG PLAA  +     V L+ERG
Sbjct: 6  YDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37

Length = 463

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGG 64
          YD ++IG G AG   A   +Q    V L+E+G 
Sbjct: 5  YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37

Length = 454

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP--------YGNPNITN 74
          YD I+IGGG AG   A + ++    VLL+++G            G  N+TN
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVTN 51

Length = 405

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLER 62
          YD +IIGGG  G   A  LS+   + SV LLE+
Sbjct: 4  YDVVIIGGGIMGAATAYELSEYEPDLSVALLEK 36

Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PLN02785	587	Protein HOTHEAD	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.91
PRK07121	492	hypothetical protein; Validated	99.72
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.71
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.7
PRK08274	466	tricarballylate dehydrogenase; Validated	99.69
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.69
COG2081	408	Predicted flavoproteins [General function predicti	99.69
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.68
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.67
PRK06175	433	L-aspartate oxidase; Provisional	99.67
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.67
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.65
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.65
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.63
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.63
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.62
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.62
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.62
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.62
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.61
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.61
PLN02815	594	L-aspartate oxidase	99.6
PRK12839	572	hypothetical protein; Provisional	99.6
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.6
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.6
PRK07395	553	L-aspartate oxidase; Provisional	99.6
PRK07804	541	L-aspartate oxidase; Provisional	99.59
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.58
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.57
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.57
PRK08071	510	L-aspartate oxidase; Provisional	99.57
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.56
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.56
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.56
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.55
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.55
PRK09077	536	L-aspartate oxidase; Provisional	99.55
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.55
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.54
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.53
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.53
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.53
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.52
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.52
PRK07512	513	L-aspartate oxidase; Provisional	99.51
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.49
PRK08275	554	putative oxidoreductase; Provisional	99.49
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.48
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.43
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.43
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.43
COG0579	429	Predicted dehydrogenase [General function predicti	99.41
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.4
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.38
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.36
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.36
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.35
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.35
PRK08401	466	L-aspartate oxidase; Provisional	99.35
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.34
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.32
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.31
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.31
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.3
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.3
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.3
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.29
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.28
PLN02661	357	Putative thiazole synthesis	99.27
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.25
PRK05257	494	malate:quinone oxidoreductase; Validated	99.25
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.24
PRK10157	428	putative oxidoreductase FixC; Provisional	99.21
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.2
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.18
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.17
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.17
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.14
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.14
PRK10015	429	oxidoreductase; Provisional	99.13
COG3573	552	Predicted oxidoreductase [General function predict	99.1
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.1
PRK06185	407	hypothetical protein; Provisional	99.09
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.08
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.05
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.05
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.04
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.03
PRK08244	493	hypothetical protein; Provisional	99.02
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.01
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.01
PRK06126	545	hypothetical protein; Provisional	99.0
PLN02985	514	squalene monooxygenase	99.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.0
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.98
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.98
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.95
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.93
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.93
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.93
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.92
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.91
PRK06847	375	hypothetical protein; Provisional	98.91
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.91
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.9
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.9
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.89
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK06184	502	hypothetical protein; Provisional	98.88
PRK06834	488	hypothetical protein; Provisional	98.88
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.87
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.87
PRK07045	388	putative monooxygenase; Reviewed	98.87
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.86
PRK08163	396	salicylate hydroxylase; Provisional	98.85
PRK07190	487	hypothetical protein; Provisional	98.83
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.82
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.82
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.82
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.82
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.81
PRK08013	400	oxidoreductase; Provisional	98.81
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.8
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.8
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.8
PRK09126	392	hypothetical protein; Provisional	98.8
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.79
PRK07208	479	hypothetical protein; Provisional	98.79
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.79
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.79
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.77
PLN02697	529	lycopene epsilon cyclase	98.77
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.75
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.75
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.75
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.74
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.73
PRK07236	386	hypothetical protein; Provisional	98.72
PRK07588	391	hypothetical protein; Provisional	98.72
PRK11445	351	putative oxidoreductase; Provisional	98.72
PTZ00367	567	squalene epoxidase; Provisional	98.71
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.7
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.69
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.69
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.68
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.68
PLN02507	499	glutathione reductase	98.66
PLN02463	447	lycopene beta cyclase	98.66
PRK06753	373	hypothetical protein; Provisional	98.65
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.65
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.65
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.64
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.61
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.6
PRK06996	398	hypothetical protein; Provisional	98.6
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.6
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.59
PRK05868	372	hypothetical protein; Validated	98.57
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.55
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.55
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.55
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.54
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.54
PRK07538	413	hypothetical protein; Provisional	98.51
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.49
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.49
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.48
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.44
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.43
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.43
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.37
PLN02487	569	zeta-carotene desaturase	98.35
PTZ00058	561	glutathione reductase; Provisional	98.34
PRK06475	400	salicylate hydroxylase; Provisional	98.33
PRK06116	450	glutathione reductase; Validated	98.33
KOG2853	509	consensus Possible oxidoreductase [General functio	98.3
PRK08294	634	phenol 2-monooxygenase; Provisional	98.3
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.3
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.29
PRK06370	463	mercuric reductase; Validated	98.29
PRK09897	534	hypothetical protein; Provisional	98.28
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.28
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.26
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.24
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.24
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.23
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.22
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.21
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.19
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.19
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.19
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.16
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.16
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.16
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.15
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.15
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.15
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.13
PLN02676	487	polyamine oxidase	98.13
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.12
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.12
TIGR02053	463	MerA mercuric reductase. This model represents the	98.11
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.1
PTZ00052	499	thioredoxin reductase; Provisional	98.09
PRK14694	468	putative mercuric reductase; Provisional	98.08
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.08
PRK07233	434	hypothetical protein; Provisional	98.07
PLN02268	435	probable polyamine oxidase	98.07
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.06
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.06
PRK13748	561	putative mercuric reductase; Provisional	98.06
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.04
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.02
PLN02546	558	glutathione reductase	98.01
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.0
PLN02576	496	protoporphyrinogen oxidase	98.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.99
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.99
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.97
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.97
PRK10262	321	thioredoxin reductase; Provisional	97.96
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.93
COG3349	485	Uncharacterized conserved protein [Function unknow	97.92
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.9
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.9
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.88
PLN02568	539	polyamine oxidase	97.88
PRK14727	479	putative mercuric reductase; Provisional	97.88
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.86
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.86
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.84
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.83
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.83
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.83
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.82
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.82
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.8
PRK12831	464	putative oxidoreductase; Provisional	97.78
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.77
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.76
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.74
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.72
PRK07846	451	mycothione reductase; Reviewed	97.7
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.68
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.66
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.65
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.65
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.65
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.64
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.63
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.62
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.61
PLN02529	738	lysine-specific histone demethylase 1	97.6
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.6
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.58
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.58
PLN02612	567	phytoene desaturase	97.55
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.54
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.54
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.54
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.53
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.52
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.52
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.52
KOG2852	380	consensus Possible oxidoreductase [General functio	97.49
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.49
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.47
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.45
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.45
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.44
PLN02852	491	ferredoxin-NADP+ reductase	97.41
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.41
PRK12831	464	putative oxidoreductase; Provisional	97.41
TIGR02053	463	MerA mercuric reductase. This model represents the	97.41
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.39
PRK06370	463	mercuric reductase; Validated	97.38
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.36
PTZ00188	506	adrenodoxin reductase; Provisional	97.36
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.35
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.35
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.34
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.32
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.32
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.31
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.3
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.28
PRK10262	321	thioredoxin reductase; Provisional	97.28
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.27
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.26
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.24
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.24
PRK06116	450	glutathione reductase; Validated	97.23
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.22
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.22
PLN03000	881	amine oxidase	97.22
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.21
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.19
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.19
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.18
PLN02507	499	glutathione reductase	97.17
PRK14727	479	putative mercuric reductase; Provisional	97.16
PRK07846	451	mycothione reductase; Reviewed	97.16
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.15
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.14
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.12
PLN02976	1713	amine oxidase	97.11
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.1
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.09
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.06
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.03
PRK13984	604	putative oxidoreductase; Provisional	96.94
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.94
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.91
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	96.86
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.86
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.85
PRK13748	561	putative mercuric reductase; Provisional	96.84
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.81
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.79
PRK14694	468	putative mercuric reductase; Provisional	96.78
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.77
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.77
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.77
PLN02546	558	glutathione reductase	96.75
PTZ00058	561	glutathione reductase; Provisional	96.75
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.75
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.75
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.65
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.63
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.62
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.55
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.51
PTZ00052	499	thioredoxin reductase; Provisional	96.46
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.42
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.42
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.41
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.33
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.33
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.3
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.27
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.27
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.26
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.11
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.78
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.69
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	95.65
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.64
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	95.58
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.57
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.48
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.43
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.16
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.11
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.09
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	95.06
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.01
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.01
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	94.95
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.93
KOG2755	334	consensus Oxidoreductase [General function predict	94.79
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	94.75
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.7
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.48
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	94.48
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.31
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.29
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.22
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	94.18
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.87
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.56
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.48
PRK13984	604	putative oxidoreductase; Provisional	93.44
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	93.32
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.31
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.27
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.25
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	93.19
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.01
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.81
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	92.68
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.63
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.58
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.5
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.49
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.48
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.4
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.34
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	92.24
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	92.18
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.18
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.09
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.04
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.82
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.75
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.71
PRK04148	134	hypothetical protein; Provisional	91.64
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.59
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.56
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.45
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.18
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.04
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.01
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.96
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.93
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.84
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.77
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.69
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.67
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.51
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	90.51
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.32
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.3
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.22
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.19
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.03
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.99
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.89
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.88
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.75
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.73
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.71
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.53
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.53
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.42
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	89.36
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	89.25
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	89.22
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	89.14
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.12
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.06
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.73
PLN02612	567	phytoene desaturase	88.73
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.73
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.72
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	88.54
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	88.47
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	88.35
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.24
PRK08328	231	hypothetical protein; Provisional	88.23
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	87.98
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	87.78
PLN02353	473	probable UDP-glucose 6-dehydrogenase	87.73
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.64
PRK09496	453	trkA potassium transporter peripheral membrane com	87.58
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	87.52
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	87.4
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.27
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.25
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.11
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	87.02
PLN02494	477	adenosylhomocysteinase	86.98
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	86.86
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	86.84
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	86.82
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	86.74
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	86.71
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	86.61
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	86.59
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	86.55
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	86.52
PRK10669	558	putative cation:proton antiport protein; Provision	86.49
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.49
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	86.46
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.42
PRK07417	279	arogenate dehydrogenase; Reviewed	86.36
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	86.34
PRK07233	434	hypothetical protein; Provisional	86.25
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.19
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	86.17
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	86.08
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	85.94
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	85.91
PRK08017	256	oxidoreductase; Provisional	85.9
PRK05562	223	precorrin-2 dehydrogenase; Provisional	85.7
PTZ00082	321	L-lactate dehydrogenase; Provisional	85.67
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	85.26
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	85.22
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	85.2
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.2
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	85.1
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	85.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	84.94
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	84.93

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=1.1e-39  Score=304.29  Aligned_cols=260  Identities=61%  Similarity=1.075  Sum_probs=210.4

Q ss_pred             ccccccCcccCCC----------CCCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCccccchhhhhhcCCCC
Q 045695           17 NYSFMHNATAAQP----------VSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDLS   86 (277)
Q Consensus        17 ~~~~~~~~~~~~~----------~~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~   86 (277)
                      .|+|+.++.+.+.          +.+|||||||+|.+|+++|.+|+++.+|||||+|+.+...+.+.....+.....+|.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~~  109 (587)
T PLN02785         30 RYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADTS  109 (587)
T ss_pred             CCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCcccccC
Confidence            4788888777666          568999999999999999999999889999999986433333333333333334677


Q ss_pred             CCCccccccCCCceeecCCceecccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHH
Q 045695           87 STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLV  166 (277)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
                      +.+.++.+..+++..+.+|++|||+|.+|++.+.|+.++++++.||+++.+.++|.+.|+.+...+...++...+.+.+.
T Consensus       110 ~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~~  189 (587)
T PLN02785        110 PTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLL  189 (587)
T ss_pred             CccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHHH
Confidence            77778877778889999999999999999999999999888888999999999999999866555566778889999999


Q ss_pred             HcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 045695          167 EVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA  246 (277)
Q Consensus       167 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~  246 (277)
                      +.|+++++++..++..+...+..+++..|.|++...+++.+++.|++|++++.|++|++++++ .+.+++||++.+.+|.
T Consensus       190 e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~g~  268 (587)
T PLN02785        190 EVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDENGN  268 (587)
T ss_pred             HcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECCCc
Confidence            999988777666666666667777778899998888777778889999999999999998641 1238999999986666


Q ss_pred             eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          247 KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       247 ~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      .+++.++.++++.||||||+++||+|||+||
T Consensus       269 ~~~~~~~~~~~~eVILsAGai~sP~lL~~SG  299 (587)
T PLN02785        269 QHQAFLSNNKGSEIILSAGAIGSPQMLLLSG  299 (587)
T ss_pred             eEEEEeecccCceEEecccccCCHHHHHHcC
Confidence            5554322124689999999999999999998

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=1.7e-36  Score=262.95  Aligned_cols=236  Identities=33%  Similarity=0.479  Sum_probs=158.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCCCCccccchhhhhhc---CCCCCCCccccccCCCceeecCCce
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSRARV  107 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  107 (277)
                      |||||||||.+|+++|.+|++ + .+|||||+|+....... .........+   .++.+...++....+..+.+.++++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   79 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDS-TPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG   79 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGH-HGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccc-hhhhccccccCcccccccccccccccccceeeeeccee
Confidence            899999999999999999999 7 79999999988764331 1110011111   1223344455566677778889999


Q ss_pred             ecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcc-------------c---CCCCchhHHHHHHH
Q 045695          108 LGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVA-------------F---EPPMRQWQSAVRDG  164 (277)
Q Consensus       108 ~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~  164 (277)
                      |||+|.+|++++.|+.+.+++.       .+|.++++.++|+++|....             .   .....+....+.+.
T Consensus        80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a  159 (296)
T PF00732_consen   80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA  159 (296)
T ss_dssp             TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred             cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence            9999999999999999854432       45899999999999993322             1   12233445778888


Q ss_pred             HHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695          165 LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD  242 (277)
Q Consensus       165 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~  242 (277)
                      +.++|++...+.......+....+. .+.+|.|+++.. |++ +.++.|++|+++++|++|+++.++   .+++||++.+
T Consensus       160 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~~  235 (296)
T PF00732_consen  160 AEELGIPVPQDFNGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYVD  235 (296)
T ss_dssp             HHHTTHHBCSCTTSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEEE
T ss_pred             HHHcCCccccccccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeeee
Confidence            8899987222211111111111111 357888887755 775 556669999999999999997332   3999999999


Q ss_pred             CCCc-eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          243 ATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       243 ~~g~-~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      .++. ...+.    +++.||||||+++||+|||+||
T Consensus       236 ~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SG  267 (296)
T PF00732_consen  236 NDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSG  267 (296)
T ss_dssp             TTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTT
T ss_pred             cCCcceeeec----cceeEEeccCCCCChhhhcccc
Confidence            7665 33333    4799999999999999999998

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=274.17  Aligned_cols=237  Identities=38%  Similarity=0.545  Sum_probs=179.5

Q ss_pred             cCCCCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccccchhhhhh----cCCCCCCCccccc----c
Q 045695           26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAA----LSDLSSTSPSQRF----I   95 (277)
Q Consensus        26 ~~~~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~   95 (277)
                      ..+...+||+||||||.|||+.|.+|+|  ..+|||||+|+.+.   ...+++.....    ..||.|.+.|++.    +
T Consensus        51 ~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~---~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m  127 (623)
T KOG1238|consen   51 GSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPP---LYSDPPLLAANLQLSLYDWSYHTEPSQHACLAM  127 (623)
T ss_pred             ccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCc---ccccchHHHHHhccccccccCcCccChhhhhhh
Confidence            3345678999999999999999999999  69999999998872   23333333322    2378888888764    7


Q ss_pred             CCCceeecCCceecccccccCeeEecCChh----hhhc--CCCChhhHhhHHHHhhhhcccCCCCch-------------
Q 045695           96 SEDGVINSRARVLGGGSCLNAGFYTRAAPY----YVRE--TGWDERLVNESYQWVEKVVAFEPPMRQ-------------  156 (277)
Q Consensus        96 ~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~----~~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~-------------  156 (277)
                      .++...|++|+++||+|.+|+|+|.|+.+.    |.+.  +||+++++.+||++.|....+.+...+             
T Consensus       128 ~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~  207 (623)
T KOG1238|consen  128 SEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAG  207 (623)
T ss_pred             cCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccc
Confidence            888999999999999999999999999953    4333  679999999999999987665544332             


Q ss_pred             -----hHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEE---ECCCCeeeCHHH-HHh-hc-CCCCeEEEcCcEEEEEEE
Q 045695          157 -----WQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTI---FDQNGQRHTAAD-LLE-YA-NPSGLTLLLHATVHKVLF  225 (277)
Q Consensus       157 -----~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~-~l~-~~-~~~gv~i~~~~~V~~l~~  225 (277)
                           ....+.+...++|.+.+     +.....+.+..+   ...+|.|+++.. |+. .. .++|+.+..++.|++|.+
T Consensus       208 ~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~  282 (623)
T KOG1238|consen  208 VYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLI  282 (623)
T ss_pred             cccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEE
Confidence                 23445666666764311     111122222221   236788877755 664 33 378999999999999999


Q ss_pred             ecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          226 RIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       226 ~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      |..+   .++.||++....++.++++    +.|+|||+||+++||||||.||
T Consensus       283 D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSG  327 (623)
T KOG1238|consen  283 DPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSG  327 (623)
T ss_pred             cCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcC
Confidence            9755   5999999997447888888    6799999999999999999998

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.1e-33  Score=264.92  Aligned_cols=237  Identities=32%  Similarity=0.442  Sum_probs=172.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCC-CCCccccchhhhhhc----CCCCCCCccccccCCCceee
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVIN  102 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  102 (277)
                      ..+|||||||||.+|+++|.+|++  |.+|||||+|+... .......+..+...+    .+|.+.+.++++..++.+.+
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~   82 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC   82 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence            457999999999999999999999  89999999997532 112222222111111    14556666777777777889


Q ss_pred             cCCceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcccC----------------CCCchhHH
Q 045695          103 SRARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFE----------------PPMRQWQS  159 (277)
Q Consensus       103 ~~~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  159 (277)
                      .++++|||+|.+|++++.|+.+.+++.       .+|.|+++.|||+++|+.....                ....+...
T Consensus        83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~  162 (560)
T PRK02106         83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ  162 (560)
T ss_pred             ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence            999999999999999999999865432       4799999999999999765210                11233456


Q ss_pred             HHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEE
Q 045695          160 AVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHG  237 (277)
Q Consensus       160 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~g  237 (277)
                      .+.+.+.++|++...+.......++..... .+.+|.|+++.. |++ ..++.|++|++++.|++|+++++     +++|
T Consensus       163 ~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~G  236 (560)
T PRK02106        163 AFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAVG  236 (560)
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEEE
Confidence            778888889987543322111122221112 235788888765 765 45578999999999999999854     9999


Q ss_pred             EEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          238 VVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       238 V~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      |++.+.++ ...+.    +++.||||||+++||+|||+||
T Consensus       237 V~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SG  271 (560)
T PRK02106        237 VEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSG  271 (560)
T ss_pred             EEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcC
Confidence            99997443 33433    5899999999999999999998

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=7.7e-33  Score=257.92  Aligned_cols=233  Identities=33%  Similarity=0.420  Sum_probs=169.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCC-CCccccchhhhhhc----CCCCCCCccccccCCCceeecCCc
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG-NPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINSRAR  106 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  106 (277)
                      ||||||||.+|+++|.+|++ + .+|||||+|+.... ......+..+...+    .+|.|.+.++....+..+.+.+++
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~   80 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK   80 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence            89999999999999999999 7 79999999975322 12222221111111    145566677777777888999999


Q ss_pred             eecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhccc---------------CCCCchhHHHHHHH
Q 045695          107 VLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAF---------------EPPMRQWQSAVRDG  164 (277)
Q Consensus       107 ~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  164 (277)
                      ++||+|.+|++.+.|+.+.+++.       .+|.|+++.|||+++|.....               .+...+....+.+.
T Consensus        81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a  160 (532)
T TIGR01810        81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA  160 (532)
T ss_pred             ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999854332       479999999999999976531               11123446677888


Q ss_pred             HHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695          165 LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD  242 (277)
Q Consensus       165 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~  242 (277)
                      ++++|++...+.......++..... .+.+|.|+++.. |++ ..++.|++|+++++|++|+++++     +++||++.+
T Consensus       161 ~~~~G~~~~~~~~~~~~~g~~~~~~-~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~  234 (532)
T TIGR01810       161 GVEAGYNKTPDVNGFRQEGFGPMDS-TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK  234 (532)
T ss_pred             HHHcCCCccCCCCCCCccceEEEEE-EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence            8899987543322111112221111 235788888765 665 44578999999999999999854     999999986


Q ss_pred             CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          243 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       243 ~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      . +....+.    +++.||||||+++||+||++||
T Consensus       235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SG  264 (532)
T TIGR01810       235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSG  264 (532)
T ss_pred             C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcC
Confidence            3 3434443    5799999999999999999998

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=8.6e-32  Score=249.79  Aligned_cols=238  Identities=29%  Similarity=0.376  Sum_probs=178.3

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhc----CCCCCCCccccccCCCceeec
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINS  103 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  103 (277)
                      +..+||+||||||.+|+++|.+|++ |.+|+|||+|+..... .+..+..+...+    .+|.+...++++...+.+.+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~   82 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP   82 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence            4578999999999999999999999 9999999999753321 223333333222    257777778888888899999


Q ss_pred             CCceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcccC--------C-----------CCchh
Q 045695          104 RARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFE--------P-----------PMRQW  157 (277)
Q Consensus       104 ~~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~--------~-----------~~~~~  157 (277)
                      +++++||+|.+|++.+.|+.+.+|+.       .+|+|++++|||++.|......        .           ...+.
T Consensus        83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~  162 (542)
T COG2303          83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI  162 (542)
T ss_pred             ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence            99999999999999999999976532       5699999999999999744431        1           11234


Q ss_pred             HHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeE
Q 045695          158 QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQA  235 (277)
Q Consensus       158 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v  235 (277)
                      ...+.+...++|++...++.-....+......+. .+|.+++... ++. ..++.|++|++++.|++|+++.+     ++
T Consensus       163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~  236 (542)
T COG2303         163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA  236 (542)
T ss_pred             HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence            5667777788888755443322222222222233 3788887765 665 67888999999999999999998     99


Q ss_pred             EEEEEEeCCCc-eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          236 HGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       236 ~gV~~~~~~g~-~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++|++...++. .+...    +++.||||||+++||+|||+||
T Consensus       237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sg  275 (542)
T COG2303         237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSG  275 (542)
T ss_pred             EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcC
Confidence            99999864432 23333    6899999999999999999997

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.91  E-value=5.7e-23  Score=189.06  Aligned_cols=230  Identities=19%  Similarity=0.180  Sum_probs=141.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccc----------cchhhhhhcC----CC-------C-CCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNIT----------NLGSFGAALS----DL-------S-STS   89 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~----------~~~~~~~~~~----~~-------~-~~~   89 (277)
                      |||||||+|++|+++|+.|++ |.+|+|||++........-.          ....+...+.    ..       . ...
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL   80 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence            799999999999999999999 99999999997654311100          0011111111    00       0 000


Q ss_pred             -------cc-ccccCC------Cc---e-eecCCceecccccccCeeEecCChhhhh--cCCCC--hhhHhhHHHHhhhh
Q 045695           90 -------PS-QRFISE------DG---V-INSRARVLGGGSCLNAGFYTRAAPYYVR--ETGWD--ERLVNESYQWVEKV  147 (277)
Q Consensus        90 -------~~-~~~~~~------~~---~-~~~~~~~~GG~s~~~~~~~~~~~~~~~~--~~gw~--~~~~~~~~~~~~~~  147 (277)
                             .+ ..++.+      +.   + ...+.+.+||+|++|++.++|..+....  ..+|+  ++++.|||.++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~  160 (544)
T TIGR02462        81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL  160 (544)
T ss_pred             CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence                   00 111111      11   1 1355688999999999999999984221  14687  68999999999999


Q ss_pred             cccCCCCc--hh-HHHHHHHH-HHc-CC-CCCCCccccCCCCeeeeeEEECCCCeeeCHH-HHH-----hhcCCCCeEEE
Q 045695          148 VAFEPPMR--QW-QSAVRDGL-VEV-GV-LPYNGFTYDHLYGTKIGGTIFDQNGQRHTAA-DLL-----EYANPSGLTLL  215 (277)
Q Consensus       148 ~~~~~~~~--~~-~~~~~~~~-~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l-----~~~~~~gv~i~  215 (277)
                      +.+.+...  +. .....+.+ +++ |. .....  +..   |...   -+..+.+++.. ..+     ..++..+++|+
T Consensus       161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--PlA---~~~~---~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~  232 (544)
T TIGR02462       161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL--PLA---CHRR---TDPTYVEWHSADTVFDLQPNDDAPSERFTLL  232 (544)
T ss_pred             hCCCCCcCCCcccchhHHHHHHHHhccccccccC--chh---hhcc---CCCccceecCCccchhhhhhhhccCCCEEEE
Confidence            88765321  11 11111111 222 22 11100  000   1000   01223344322 222     22346789999


Q ss_pred             cCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          216 LHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       216 ~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +++.|++|+.|+++  ..+|++|++.|. +++.+++.     |+.||||||+++||+|||+|+
T Consensus       233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~  288 (544)
T TIGR02462       233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSG  288 (544)
T ss_pred             cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCC
Confidence            99999999998641  128999999986 57777776     789999999999999999996

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07121 hypothetical protein; Validated

Probab=99.72  E-value=2e-16  Score=146.55  Aligned_cols=63  Identities=16%  Similarity=0.302  Sum_probs=50.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|+++++|++|+.++++    +|+||++.+ +++.+.+.    +++.||||+|++....-|+
T Consensus       183 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~  245 (492)
T PRK07121        183 LAKRAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMV  245 (492)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHH
Confidence            445677789999999999999998654    999999975 55566665    3489999999998765554

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.71  E-value=2.8e-16  Score=147.06  Aligned_cols=62  Identities=11%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      |...+++.|++|++++.|++|+.+++     +|+||.+.+ +++.+.+.    +++.||||||||....-|+
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~  284 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMR  284 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHH
Confidence            44456678999999999999997644     999999875 55555665    5689999999999875443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.70  E-value=5e-16  Score=144.12  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=47.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +...+++.|++|+++++|++|+.+++     +|+||++...+++...+.     ++.||||+|+|..+.-|
T Consensus       196 L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~~VVlAtGG~~~n~~m  256 (506)
T PRK06481        196 LLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SKAVVVTTGGFGANKDM  256 (506)
T ss_pred             HHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cCeEEEeCCCcccCHHH
Confidence            45566678999999999999987654     999999976444555564     69999999999876444

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.69  E-value=4.8e-16  Score=143.15  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +...+++.|++|+++++|++|+.+++     +|+||++.+.+++...+.     ++.||||+|++..++.|++
T Consensus       137 l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        137 LYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHH
Confidence            55566778999999999999998765     999999865456555665     6899999999998876654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.69  E-value=5.5e-16  Score=145.81  Aligned_cols=62  Identities=16%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             HhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          204 LEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       204 l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      ...+++.|++|++++.|++|+.|+++    +|+||.+.+ +++.+.+.    +++.||||||+|....-|+
T Consensus       220 ~~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~  281 (584)
T PRK12835        220 RLALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWR  281 (584)
T ss_pred             HHHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHH
Confidence            34667789999999999999998665    999999975 66666776    3457999999999865554

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.69  E-value=3.1e-16  Score=136.13  Aligned_cols=166  Identities=20%  Similarity=0.294  Sum_probs=108.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCceec
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLG  109 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  109 (277)
                      +.+||||||+|++|+.+|..+++ |.+|+|+|+++....+-.+                                    -
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~------------------------------------s   45 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM------------------------------------S   45 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe------------------------------------c
Confidence            46899999999999999999999 9999999999887543321                                    1


Q ss_pred             ccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCchh-HHHHHHHHHHcCCCCCCCccccCCCCeeeee
Q 045695          110 GGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMRQW-QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGG  188 (277)
Q Consensus       110 G~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  188 (277)
                      |++.+|...... ..++..+.+-.-..+.+             ....| ++.+++++..+|++-.          ....+
T Consensus        46 GgGrCN~Tn~~~-~~~~ls~~p~~~~fl~s-------------al~~ft~~d~i~~~e~~Gi~~~----------e~~~G  101 (408)
T COG2081          46 GGGRCNFTNSEA-PDEFLSRNPGNGHFLKS-------------ALARFTPEDFIDWVEGLGIALK----------EEDLG  101 (408)
T ss_pred             CCCCcccccccc-HHHHHHhCCCcchHHHH-------------HHHhCCHHHHHHHHHhcCCeeE----------EccCc
Confidence            233333332211 11122210000111111             12233 4677788888888632          12344


Q ss_pred             EEECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          189 TIFDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       189 ~~~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      ..||.....++... ++..+++.||+|+++++|.++..++.        +..+...+|+  ++.     ++.+|||+||.
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~  166 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGK  166 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCc
Confidence            56665444444444 66788889999999999999999885        5666655665  444     59999999998


Q ss_pred             ccHH
Q 045695          268 GSPQ  271 (277)
Q Consensus       268 ~tp~  271 (277)
                      ..|+
T Consensus       167 S~P~  170 (408)
T COG2081         167 SWPK  170 (408)
T ss_pred             CCCC
Confidence            8885

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.68  E-value=5.8e-16  Score=140.63  Aligned_cols=57  Identities=23%  Similarity=0.395  Sum_probs=44.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++.+++|++++.|++|+.+++     +|+||++.+ .+++.+++.     ++.||||||++..
T Consensus       147 l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~  204 (417)
T PF00890_consen  147 LAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG
T ss_pred             HHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc
Confidence            44566778899999999999999876     999999995 467777776     5799999999998

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.67  E-value=2.4e-15  Score=140.90  Aligned_cols=62  Identities=18%  Similarity=0.327  Sum_probs=50.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|++++.|++|+.+++     +|+||++.. +++.+.+.    +++.||||||++..+.-|+
T Consensus       214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~  275 (557)
T PRK12844        214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMR  275 (557)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHH
Confidence            34566778999999999999998865     999999975 56666676    3468999999999875554

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.67  E-value=2.1e-15  Score=137.36  Aligned_cols=56  Identities=14%  Similarity=0.300  Sum_probs=43.5

Q ss_pred             HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ++..+ ++.|++|++++.|++|+.+++     +|+||.+.+ +++.+.+.     ++.||||+|++..
T Consensus       134 L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~  190 (433)
T PRK06175        134 LLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG  190 (433)
T ss_pred             HHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence            44434 456999999999999998765     999988765 45545565     6899999999764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.67  E-value=1.7e-15  Score=140.84  Aligned_cols=58  Identities=16%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      .++.|++|+++++|++|+.+++     +|+||++.. +++.+.+.    +++.||||||++....-|+
T Consensus       184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~  241 (513)
T PRK12837        184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMR  241 (513)
T ss_pred             HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHH
Confidence            3446999999999999998754     999999875 56666776    3468999999998765444

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.65  E-value=6.2e-15  Score=138.21  Aligned_cols=35  Identities=37%  Similarity=0.516  Sum_probs=33.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.++||||||+|.+|++||+++++ |.+|+||||+.
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            468999999999999999999999 99999999997

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.65  E-value=5.1e-15  Score=135.33  Aligned_cols=63  Identities=19%  Similarity=0.346  Sum_probs=48.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|+++++|++|+.++++    +|+||++.+.+++.+.+     +++.||||+|++....-|+
T Consensus       136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~  198 (439)
T TIGR01813       136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI  198 (439)
T ss_pred             HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence            445667789999999999999997654    89999998744443344     3699999999998754443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.63  E-value=1.4e-14  Score=135.56  Aligned_cols=58  Identities=22%  Similarity=0.412  Sum_probs=47.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.++++    +|+||.+.+ .++..+.+.     ++.|||||||+..
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~  198 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ  198 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence            445566689999999999999998763    699999887 566666665     6999999999864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.63  E-value=1.3e-14  Score=137.77  Aligned_cols=55  Identities=16%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ..+++.|++|++++.|++|+.+++     +|+||.+.+. ++..+.+.     ++.|||||||++.
T Consensus       178 ~~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~  233 (640)
T PRK07573        178 RQIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERHT-----ADAVVLATGGYGN  233 (640)
T ss_pred             HHHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCccc
Confidence            356678999999999999998765     9999999874 46555664     7899999999875

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.62  E-value=8.1e-15  Score=138.06  Aligned_cols=58  Identities=14%  Similarity=0.099  Sum_probs=46.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|+++++++.|++|+.++++    +|+||.+.+ .+++.+.+.     ++.|||||||++.
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  207 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            445566789999999999999987554    999999975 356666665     6999999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.62  E-value=4.8e-16  Score=139.51  Aligned_cols=166  Identities=23%  Similarity=0.344  Sum_probs=82.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCceeccc
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGG  111 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~  111 (277)
                      |||||||+|++|+.||+.|++ |.+|+||||+.....+-.                                   ..|+ 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil-----------------------------------~tG~-   44 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL-----------------------------------ITGN-   44 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH-----------------------------------HCGG-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee-----------------------------------ecCC-
Confidence            899999999999999999999 999999999977643111                                   1122 


Q ss_pred             ccccCeeEecCCh-hhhhcCCCChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEE
Q 045695          112 SCLNAGFYTRAAP-YYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTI  190 (277)
Q Consensus       112 s~~~~~~~~~~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~  190 (277)
                      +.+|..-. .... ++....+-..+.+.+.+...            ....+.+.+.++|++...          ...+.+
T Consensus        45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~  101 (409)
T PF03486_consen   45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRV  101 (409)
T ss_dssp             GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEE
T ss_pred             CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEE
Confidence            22221110 0111 11111000111111111111            124566777888875211          112234


Q ss_pred             ECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          191 FDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       191 ~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      |+...+..+... ++..+++.|++|+++++|.+|..+++     .+..|+..  +++  .+.     ++.||||+|+...
T Consensus       102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~--~~~-----a~~vILAtGG~S~  167 (409)
T PF03486_consen  102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGG--EYE-----ADAVILATGGKSY  167 (409)
T ss_dssp             EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTE--EEE-----ESEEEE----SSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Ccc--ccc-----CCEEEEecCCCCc
Confidence            444333334433 66677888999999999999999887     77777772  333  343     5999999999877


Q ss_pred             HH
Q 045695          270 PQ  271 (277)
Q Consensus       270 p~  271 (277)
                      |+
T Consensus       168 p~  169 (409)
T PF03486_consen  168 PK  169 (409)
T ss_dssp             GG
T ss_pred             cc
Confidence            75

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.62  E-value=1.4e-14  Score=137.01  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=46.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.+++|+.++++    +|.||.+.+ .+++.+.+.     ++.|||||||++.
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  230 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRFR-----AHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEEE-----CCcEEEeCCCCcc
Confidence            445566689999999999999985444    999999876 356666665     7899999999864

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.62  E-value=1.2e-14  Score=137.34  Aligned_cols=58  Identities=17%  Similarity=0.313  Sum_probs=47.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.++++    +|+||.+.+ .+++.+.+.     ++.|||||||++.
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  213 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence            445566689999999999999998644    999999875 456666665     6899999999875

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.61  E-value=1.6e-14  Score=135.56  Aligned_cols=56  Identities=14%  Similarity=0.162  Sum_probs=45.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+.+.|++|++++.+++|+.+++     +|+||.+.+. +++.+.+.     ++.|||||||++
T Consensus       142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~  198 (566)
T PRK06452        142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFFK-----TKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----eCeEEECCCccc
Confidence            44445557999999999999999865     9999999874 45555554     699999999987

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.61  E-value=2e-14  Score=136.15  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=46.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.+++|+.++++    +|.||.+.+. +|+.+.+.     ++.|||||||++.
T Consensus       193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  251 (635)
T PLN00128        193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence            444555679999999999999987544    9999999763 56666665     7999999999875

>PLN02815 L-aspartate oxidase

Probab=99.60  E-value=1.5e-14  Score=135.85  Aligned_cols=61  Identities=26%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+ ++.|++|++++.+++|+.++++ +..+|+||.+.+ .++..+.+.     ++.|||||||++.
T Consensus       161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  223 (594)
T PLN02815        161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH  223 (594)
T ss_pred             HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence            44433 4469999999999999987542 011499999975 356656665     6999999999863

>PRK12839 hypothetical protein; Provisional

Probab=99.60  E-value=3.6e-14  Score=133.19  Aligned_cols=63  Identities=17%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      ++..+.+.|++|++++.|++|+.++++    +|+||++.+.++. ..+.    +++.||||||+|....-|+
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence            445567789999999999999987554    9999999875554 3444    4689999999999855443

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.60  E-value=5.5e-14  Score=131.89  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=50.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +.+.+++.|++|++++.|++|+.+++     +|+||++.. +++.+.+.    +++.||||||+|...+-|+.
T Consensus       214 L~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~  276 (557)
T PRK07843        214 LRIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRA  276 (557)
T ss_pred             HHHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHH
Confidence            34456778999999999999998765     999999975 56666676    34579999999999766653

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.60  E-value=3.2e-14  Score=143.17  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=45.5

Q ss_pred             CCCeEEEcCcEEEEEEEecC----CCCCCeEEEEEEEeC---CCceEEEEeecCCCcEEEEecCccccHH
Q 045695          209 PSGLTLLLHATVHKVLFRIK----GKARPQAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       209 ~~gv~i~~~~~V~~l~~~~~----~~~~~~v~gV~~~~~---~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      +.|++|++++.|++|+.+++    |+...+|+||++.+.   +|+.+.+.     +|.||||||||....
T Consensus       559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~  623 (1167)
T PTZ00306        559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH  623 (1167)
T ss_pred             cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence            36999999999999999752    111138999999975   56666665     699999999999864

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.60  E-value=1.9e-14  Score=134.57  Aligned_cols=56  Identities=16%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             HHhhc-CCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYA-NPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~-~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+ ++.|++|++++.|++|+.++ ++    +|+||.+.+ ++..+.+.     ++.|||||||++
T Consensus       140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i~-----AkaVILATGG~~  197 (553)
T PRK07395        140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWLR-----AGAVILATGGGG  197 (553)
T ss_pred             HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEEE-----cCEEEEcCCCCc
Confidence            44434 45699999999999999875 34    999999875 56555554     699999999975

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.59  E-value=4.6e-14  Score=131.96  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC----CCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA----TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~----~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      |...+++.++++++++.|++|+.++++    +|.||.+.+.    ++....+.     ++.||||+|++..
T Consensus       150 L~~~~~~~gV~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~~~~~g~~~i~-----Ak~VIlATGG~~~  211 (541)
T PRK07804        150 LDAAVRADPLDIREHALALDLLTDGTG----AVAGVTLHVLGEGSPDGVGAVH-----APAVVLATGGLGQ  211 (541)
T ss_pred             HHHHHHhCCCEEEECeEeeeeEEcCCC----eEEEEEEEeccCCCCCcEEEEE-----cCeEEECCCCCCC
Confidence            445666678999999999999987654    9999998731    22234454     6999999999763

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.58  E-value=5.4e-14  Score=131.64  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             eeeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEE
Q 045695          186 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEII  261 (277)
Q Consensus       186 ~~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VV  261 (277)
                      .++.+++ +|+-.+...   +...+.+.|++++++++|++|..+++     +++||++.+. +++...+.     ++.||
T Consensus       136 ~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VV  204 (546)
T PRK11101        136 IGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVV  204 (546)
T ss_pred             eEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEE
Confidence            3444444 565433322   33456778999999999999998776     8999999763 34445665     69999


Q ss_pred             EecCccccHHHHh
Q 045695          262 VSAGALGSPQLLM  274 (277)
Q Consensus       262 lAaG~~~tp~lLl  274 (277)
                      +|||.+ +.+|+.
T Consensus       205 nAaG~w-a~~l~~  216 (546)
T PRK11101        205 NAAGIW-GQHIAE  216 (546)
T ss_pred             ECCChh-HHHHHH
Confidence            999984 565543

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.57  E-value=3.9e-14  Score=134.79  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|+.++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.|||||||++.
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~  221 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence            34456678999999999999998765     999999987 467666665     6999999999874

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.57  E-value=1.6e-13  Score=129.25  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=47.7

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|++++.|++|+.+++     +|+||++.+.+ ....+.    +++.||||+|++....-|+
T Consensus       220 L~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~-~~~~i~----a~k~VVlAtGg~~~n~~~~  281 (574)
T PRK12842        220 LAKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAG-GERRIT----ARRGVVLACGGFSHDLARI  281 (574)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCC-ceEEEE----eCCEEEEcCCCccchHHHH
Confidence            34456778999999999999998865     99999998633 334454    3468999999998665554

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.57  E-value=9.6e-14  Score=128.92  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=44.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+. .|++|++++.|++|+.+++     +|.||.+.+.+++.+.+.     ++.||||||++..
T Consensus       136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~  191 (510)
T PRK08071        136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence            334444 6999999999999998765     999999987556655665     6999999999874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.56  E-value=1.5e-13  Score=129.42  Aligned_cols=62  Identities=16%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      |+..+++.|++|++++.|++|+.+++     +|+||.+.+ +++.+.+.    +++.||||||++....-|+
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~  288 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLR  288 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHH
Confidence            45566778999999999999998755     999999875 56666665    4578999999999875554

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.56  E-value=2.2e-13  Score=128.40  Aligned_cols=62  Identities=18%  Similarity=0.265  Sum_probs=48.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|+++++|++|+.+++     +|+||++.+ ++..+.+.    +++.||||+|++....-|+
T Consensus       223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~  284 (581)
T PRK06134        223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR  284 (581)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence            44567778999999999999998754     999999986 34444565    3489999999998765553

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.56  E-value=1.4e-13  Score=129.80  Aligned_cols=58  Identities=14%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++++.++.+++|+.++++    +|.||.+.+. +++.+.+.     ++.||||+||+..
T Consensus       154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  212 (591)
T PRK07057        154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYILE-----AKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence            445556689999999999999987554    9999999763 45555554     7999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.55  E-value=8.2e-14  Score=132.18  Aligned_cols=48  Identities=13%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             eEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          212 LTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       212 v~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ++|+.++.|++|+.+++     +|.||.+.+ .+++.+.+.     ++.||||||+++.
T Consensus       166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccC
Confidence            99999999999998765     999999875 356555665     6899999999764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.55  E-value=1.5e-13  Score=129.42  Aligned_cols=57  Identities=23%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++.|++|++++.|++|+.+++     +|.||.+.+ .+++...+.     ++.||||||++..
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~  198 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence            45556678999999999999998765     999999765 345555554     6999999999863

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.55  E-value=2e-13  Score=127.54  Aligned_cols=54  Identities=9%  Similarity=0.114  Sum_probs=43.0

Q ss_pred             cCCCCeEEEcCcEEEEEEEec-----CCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          207 ANPSGLTLLLHATVHKVLFRI-----KGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~-----~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      .+++|++|++++.|++|+.++     ++    +|+||.+.+. +++.+.+.     ++.||||+|++..
T Consensus       149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~  208 (536)
T PRK09077        149 RNHPNITVLERHNAIDLITSDKLGLPGR----RVVGAYVLNRNKERVETIR-----AKFVVLATGGASK  208 (536)
T ss_pred             HhCCCcEEEeeEEeeeeeecccccCCCC----EEEEEEEEECCCCcEEEEe-----cCeEEECCCCCCC
Confidence            345699999999999999864     23    9999999863 46655665     6999999999873

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.55  E-value=1.7e-13  Score=129.07  Aligned_cols=52  Identities=15%  Similarity=0.229  Sum_probs=42.4

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +..++++++++.|++|+.+++     +|.||.+.+ .++..+.+.     ++.||||+|++..
T Consensus       145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~  197 (582)
T PRK09231        145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR  197 (582)
T ss_pred             cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence            345899999999999998765     999999875 356555665     7999999999774

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.54  E-value=2.2e-13  Score=128.50  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=40.7

Q ss_pred             CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          211 GLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       211 gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ++++++++.+++|+.++++    +|+||.+.+. +++.+.+.     ++.|||||||++.
T Consensus       151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESFP-----ADAVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEEE-----CCEEEECCCCCcC
Confidence            4899999999999987554    9999999874 34444554     7999999999875

>TIGR00551 nadB L-aspartate oxidase

Probab=99.53  E-value=3.1e-13  Score=125.12  Aligned_cols=56  Identities=13%  Similarity=0.244  Sum_probs=43.9

Q ss_pred             HHhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANP-SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~-~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++ .|++|++++.|++|+.+++     +|.||.+.+. +....+.     ++.||||+|++..
T Consensus       134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i~-----A~~VVlAtGG~~~  190 (488)
T TIGR00551       134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETCH-----ADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEEE-----cCEEEECCCcccC
Confidence            4444554 7999999999999998765     9999999864 4444554     6999999999864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.53  E-value=2.5e-13  Score=128.02  Aligned_cols=56  Identities=18%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             HHhhc-CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYA-NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~-~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+ +..|++++.++.|++|+.+++     +|+||.+.+. +++.+.+.     ++.||||+|++.
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~  200 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVFQ-----AKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCcEEEcCchhc
Confidence            44433 446999999999999998765     9999998763 45545554     699999999985

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.53  E-value=3.9e-13  Score=126.66  Aligned_cols=57  Identities=19%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|+++++++.|++|+.+++     +|+||.+.+ .+++...+.     ++.||||+|++..
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~  192 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence            44555566999999999999998865     999999876 345555565     6999999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.52  E-value=3.3e-13  Score=127.28  Aligned_cols=58  Identities=24%  Similarity=0.309  Sum_probs=45.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecC---CCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIK---GKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~---~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++.|++|++++.|++|+.+++   +    +|+||.+.+ .+++.+.+.     ++.||||||+++.
T Consensus       146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  207 (583)
T PRK08205        146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence            44556678999999999999998762   4    999999865 345555565     6999999999873

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.52  E-value=3e-13  Score=127.24  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=43.0

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +..+++++.++.+++|+.+++     +|.||.+.+ .+++.+.+.     ++.||||+|++..
T Consensus       144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence            446899999999999998865     999999876 356666665     6999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.51  E-value=3.5e-13  Score=125.28  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=42.7

Q ss_pred             HHhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANP-SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~-~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+.+ .|++|+.++.|++|+.+++     +|+||.+.+ ++..+.+.     ++.|||||||++
T Consensus       142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i~-----Ak~VVLATGG~~  197 (513)
T PRK07512        142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVLP-----ARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEEE-----CCEEEEcCCCCc
Confidence            4444443 5999999999999988765     999999986 34444554     699999999986

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.49  E-value=6.4e-13  Score=125.56  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ++.|++|++++.|++|+.++++    +|+||.+.+. +++.+.+.     ++.|||||||++.
T Consensus       144 ~~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~  197 (603)
T TIGR01811       144 AAGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN  197 (603)
T ss_pred             ccCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence            3458999999999999987654    9999999874 46555665     6899999999863

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK08275 putative oxidoreductase; Provisional

Probab=99.49  E-value=6.1e-13  Score=124.87  Aligned_cols=57  Identities=19%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+++.|++|++++.|++|+.++++    +|.||.+.+ .+++...+.     ++.||||||+++
T Consensus       143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VIlATGG~~  200 (554)
T PRK08275        143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVIR-----AKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEEE-----CCEEEECCCCcc
Confidence            445566689999999999999997444    999999875 345555554     689999999975

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.48  E-value=3.4e-13  Score=119.26  Aligned_cols=59  Identities=29%  Similarity=0.356  Sum_probs=43.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +...+++.|++|+++++|++|..+++     +++||++.  +|+   +.     ++.||+|+|. .+++++-.+|
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~  211 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLG  211 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTT
T ss_pred             hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeeccc
Confidence            44566667999999999999999998     88888875  342   44     5999999998 6777766543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.45  E-value=1.7e-12  Score=122.34  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=42.6

Q ss_pred             cCCCCeEEEcCcEEEEEEEecC--CCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          207 ANPSGLTLLLHATVHKVLFRIK--GKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~--~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ..+.++++++++.|++|+.+++  +    +|.||.+.+ .+++.+.+.     ++.||||||++..
T Consensus       136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  192 (614)
T TIGR02061       136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAVN  192 (614)
T ss_pred             HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCcccc
Confidence            3445689999999999998752  4    999999976 356666665     7999999999863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.43  E-value=4.5e-13  Score=113.60  Aligned_cols=40  Identities=28%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             CCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        27 ~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .....++||+|||+|++|+++|+.|++ |++|+||||....
T Consensus        20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~   60 (257)
T PRK04176         20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF   60 (257)
T ss_pred             HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            344558999999999999999999999 9999999998653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.43  E-value=3.7e-12  Score=125.59  Aligned_cols=50  Identities=18%  Similarity=0.167  Sum_probs=41.4

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      .++.+.+++.+++|+.+++     +|.||.+.+ .+|+.+.+.     +|.|||||||++.
T Consensus       156 ~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  206 (897)
T PRK13800        156 ERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR  206 (897)
T ss_pred             CCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence            4899999999999998765     999999876 357666665     7999999999863

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.43  E-value=1.3e-12  Score=124.01  Aligned_cols=74  Identities=23%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             ECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecC
Q 045695          191 FDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       191 ~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      ...+|+-.+...   +...+.+.|++++.+++|++|..++ ++    ++++|++.|. +++.+.+.     ++.||+|||
T Consensus       223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaG  293 (627)
T PLN02464        223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAG  293 (627)
T ss_pred             EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCC
Confidence            345666543332   4556777899999999999999875 33    8999999863 45554565     699999999


Q ss_pred             ccccHHHHh
Q 045695          266 ALGSPQLLM  274 (277)
Q Consensus       266 ~~~tp~lLl  274 (277)
                      + .+.+++.
T Consensus       294 a-ws~~l~~  301 (627)
T PLN02464        294 P-FCDEVRK  301 (627)
T ss_pred             H-hHHHHHH
Confidence            9 4555554

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.43  E-value=2.8e-12  Score=121.42  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=42.8

Q ss_pred             HHhhcCCC-CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPS-GLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~-gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+++. |+++++++.|++|+.+++     +|+||.+.+ .+++...+.     ++.||||+|++.
T Consensus       138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~  195 (608)
T PRK06854        138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence            33445444 599999999999998765     999998754 345555554     699999999986

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.41  E-value=9.8e-12  Score=111.21  Aligned_cols=60  Identities=25%  Similarity=0.319  Sum_probs=44.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      |...+..+|++++.+++|++|..+++        |+.+.+ .+|+.. +.     ++.||.|||. .+.+|+..+|
T Consensus       159 l~e~a~~~g~~i~ln~eV~~i~~~~d--------g~~~~~~~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g  219 (429)
T COG0579         159 LAEEAQANGVELRLNTEVTGIEKQSD--------GVFVLNTSNGEET-LE-----AKFVINAAGL-YADPLAQMAG  219 (429)
T ss_pred             HHHHHHHcCCEEEecCeeeEEEEeCC--------ceEEEEecCCcEE-EE-----eeEEEECCch-hHHHHHHHhC
Confidence            55666677999999999999999887        233333 345543 54     6899999998 6777777665

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.40  E-value=1.5e-11  Score=110.18  Aligned_cols=36  Identities=36%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++|||+|||+|+.|+++|+.|++ |.+|+||||+...
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            46899999999999999999999 9999999999653

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.38  E-value=2.3e-11  Score=109.02  Aligned_cols=34  Identities=38%  Similarity=0.672  Sum_probs=31.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |||||||+|++|+++|+.|++ |.+|+|||++...
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~   35 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP   35 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            699999999999999999999 9999999998653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.36  E-value=1.1e-11  Score=112.48  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +||||||+|++|+++|++|++ |.+|+||||+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            599999999999999999999 999999999974

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.36  E-value=3.6e-12  Score=107.83  Aligned_cols=37  Identities=32%  Similarity=0.384  Sum_probs=34.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+|||+|||+|++|+++|+.|++ |.+|+||||+...
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~   56 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF   56 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            458999999999999999999999 9999999999654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.35  E-value=1.3e-11  Score=109.93  Aligned_cols=57  Identities=21%  Similarity=0.308  Sum_probs=45.1

Q ss_pred             HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      ++. ..+++|++|+.++.+.+|+.+++.    .+.||.+.+.+++...+.     ++.|||||||++
T Consensus       139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~~-----a~~vVLATGG~g  196 (518)
T COG0029         139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTFR-----AKAVVLATGGLG  196 (518)
T ss_pred             HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEEe-----cCeEEEecCCCc
Confidence            444 455699999999999999999982    455999987534456665     799999999976

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.35  E-value=7.4e-12  Score=114.32  Aligned_cols=60  Identities=20%  Similarity=0.313  Sum_probs=46.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEec-CCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRI-KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|+++++|++|+.++ ++    +|+||...+ ++  ..+.     ++.||||+|++..++-|+
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i~-----ak~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRIT-----TQALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEEE-----cCEEEEcCCCcccCHHHH
Confidence            5556777899999999999999873 43    899988753 22  3454     689999999998876554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.35  E-value=3.8e-11  Score=111.62  Aligned_cols=39  Identities=33%  Similarity=0.520  Sum_probs=35.0

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      |...|||||||||+.|+++|+.|++ |++|+||||++...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~   42 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS   42 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            3457999999999999999999999 99999999986543

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.35  E-value=2.2e-11  Score=112.10  Aligned_cols=32  Identities=31%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +||||||+|.+|++||++|++ |.+|+||||+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999 99999999984

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.34  E-value=2.6e-11  Score=112.68  Aligned_cols=39  Identities=31%  Similarity=0.486  Sum_probs=35.3

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +..+|||||||||+.|+++|+.|++ |++|+||||++...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~   42 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ   42 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence            4567999999999999999999999 99999999996543

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.32  E-value=4.9e-12  Score=101.92  Aligned_cols=37  Identities=38%  Similarity=0.502  Sum_probs=30.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++||+|||+|++|+++|+.|++ |+||+|+|+....
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~   52 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSP   52 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCC
Confidence            458999999999999999999999 9999999998654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.31  E-value=9.1e-11  Score=106.29  Aligned_cols=37  Identities=38%  Similarity=0.553  Sum_probs=32.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--C-CcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g-~~VlvlE~g~~~   66 (277)
                      +..+||+|||+|+.|+++|+.|++  | .+|+||||+...
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~   67 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG   67 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence            468999999999999999999996  7 499999998543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.31  E-value=3.9e-11  Score=110.41  Aligned_cols=38  Identities=32%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .+.++||+|||+|++|+++|++|++   |.+|+|||++...
T Consensus        21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g   61 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG   61 (460)
T ss_pred             CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc
Confidence            3557999999999999999999997   6899999998653

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.30  E-value=2.3e-11  Score=113.24  Aligned_cols=53  Identities=28%  Similarity=0.336  Sum_probs=43.2

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      .+..+++++.+..+++|+.++++    .|.||...+. +++.+.++     ++.||+||||.+
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g  202 (562)
T COG1053         149 LKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG  202 (562)
T ss_pred             HHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence            34367899999999999998874    6999999984 46666665     689999999987

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.30  E-value=5.2e-11  Score=109.73  Aligned_cols=36  Identities=39%  Similarity=0.682  Sum_probs=32.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      ...+||||||||+.|+++|+.|++ +  .+|+||||...
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~   81 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD   81 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence            357999999999999999999998 4  69999999863

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.30  E-value=2.1e-10  Score=105.80  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~   65 (277)
                      +||+|||||++|+++|+.|++   |.+|+||||...
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            699999999999999999997   799999999764

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.29  E-value=4.3e-11  Score=107.96  Aligned_cols=35  Identities=40%  Similarity=0.798  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .+||+|||+|++|+++|++|++   |.+|+||||+...
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~   39 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP   39 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence            4899999999999999999996   7899999998643

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.28  E-value=9.8e-11  Score=106.32  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=30.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||+|||+|++|+++|++|++ |.+|+||||+..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            89999999999999999999 999999999853

>PLN02661 Putative thiazole synthesis

Probab=99.27  E-value=2.8e-11  Score=105.59  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=32.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~   65 (277)
                      ..++||+|||+|++|+++|+.|++  |.+|+||||+..
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            357899999999999999999995  799999999754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.25  E-value=2.4e-11  Score=97.51  Aligned_cols=37  Identities=32%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+.||||||+|++|++|||.||+ |+||+|+||.-..
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~   65 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF   65 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence            346799999999999999999999 9999999998543

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.25  E-value=3.2e-10  Score=104.75  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~   65 (277)
                      +..+||||||||+.|+++|+.|++   |.+|+||||...
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            346899999999999999999987   589999999864

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.24  E-value=1.7e-10  Score=105.45  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .+...|.++++.++|+++..+++      +.||++.|. .|+.+.++     ++.||.|||.+ ..+++
T Consensus       173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGpW-~d~i~  229 (532)
T COG0578         173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGPW-VDEIL  229 (532)
T ss_pred             HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCcc-HHHHH
Confidence            56678999999999999998773      889999984 47888887     79999999994 44443

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.21  E-value=1.2e-10  Score=106.22  Aligned_cols=37  Identities=43%  Similarity=0.663  Sum_probs=34.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .+|||||||+|++|+++|+.|++ |++|+||||+..+.
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            46999999999999999999999 99999999997653

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.20  E-value=3.1e-10  Score=101.28  Aligned_cols=34  Identities=35%  Similarity=0.574  Sum_probs=31.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |||+|||+|++|+++|+.|++ |.+|+|||++...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            699999999999999999999 9999999998653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.18  E-value=2.6e-11  Score=110.53  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=0.0

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCc
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA  266 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~  266 (277)
                      ..+.+.|++|++++.|.+++.+++     +|.+|++.+++| ..++.     ++.||-|+|-
T Consensus        98 ~~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i~-----A~~~IDaTG~  148 (428)
T PF12831_consen   98 EMLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEIR-----AKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc-----cccccccccccc-ccccc-----cccccccccc
Confidence            345668999999999999999876     999999998655 56665     7999999994

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.17  E-value=2.1e-10  Score=103.62  Aligned_cols=37  Identities=41%  Similarity=0.701  Sum_probs=34.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ++|||+|||+|++|++||+.|++ |.+|+||||+..+.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G   39 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG   39 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            57999999999999999999999 99999999998765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.17  E-value=2e-09  Score=99.16  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g   63 (277)
                      ...+||||||||++|+++|+.|++   +.+|+||||-
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~   40 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL   40 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            457899999999999999999998   6999999993

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.14  E-value=5e-11  Score=106.81  Aligned_cols=67  Identities=25%  Similarity=0.330  Sum_probs=53.7

Q ss_pred             CCCeeeCHHH--HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccc
Q 045695          193 QNGQRHTAAD--LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       193 ~~g~~~~~~~--~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      .+|+...++.  .+. .+.+.|.+++-+.+|.+|+.++++    ++.|++++|. .|+++.|+     ++.||-|||.|.
T Consensus       217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs  287 (680)
T KOG0042|consen  217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS  287 (680)
T ss_pred             ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence            4566655543  222 355679999999999999999986    9999999983 68888987     699999999964

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.14  E-value=6e-10  Score=106.96  Aligned_cols=34  Identities=41%  Similarity=0.526  Sum_probs=31.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++||||||+|++|+++|+.|++ |.+|+||||+..
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~  294 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA  294 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4799999999999999999999 999999999854

>PRK10015 oxidoreductase; Provisional

Probab=99.13  E-value=2.4e-10  Score=104.13  Aligned_cols=37  Identities=35%  Similarity=0.611  Sum_probs=34.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .+|||||||+|++|+++|+.|++ |++|+||||+..+.
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            46999999999999999999999 99999999997653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=99.10  E-value=4e-09  Score=89.95  Aligned_cols=36  Identities=36%  Similarity=0.549  Sum_probs=33.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|.+|+.+|.+||+ |.+|+|||.-...
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq   40 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ   40 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence            47899999999999999999999 9999999987664

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.10  E-value=5.8e-10  Score=96.42  Aligned_cols=55  Identities=20%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      ++..+|+++. +..|.+|+.|++     .|.||.++++.++..+..     |.-.|+|-|.|..-|
T Consensus       157 a~slpNV~~e-eGtV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR  211 (509)
T KOG1298|consen  157 AASLPNVRLE-EGTVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR  211 (509)
T ss_pred             HhcCCCeEEe-eeeHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence            5566899984 556888888887     999999998777766665     789999999987654

>PRK06185 hypothetical protein; Provisional

Probab=99.09  E-value=2.3e-09  Score=97.12  Aligned_cols=36  Identities=36%  Similarity=0.547  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+++||+|||+|++|+++|+.|++ |++|+|||+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            467999999999999999999999 999999999854

>TIGR00275 flavoprotein, HI0933 family

Probab=99.08  E-value=1.6e-09  Score=98.00  Aligned_cols=32  Identities=50%  Similarity=0.602  Sum_probs=29.5

Q ss_pred             EEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           36 IIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        36 iIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ||||+|++|+++|+.|++ |.+|+||||.....
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G   33 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIG   33 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccc
Confidence            699999999999999999 99999999987643

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.05  E-value=2.3e-09  Score=91.36  Aligned_cols=39  Identities=36%  Similarity=0.439  Sum_probs=35.6

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +....|+||||+|+-|+++|++|++ |.++++||+-+.+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph   43 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH   43 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence            4567899999999999999999999 99999999997764

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.05  E-value=3.8e-09  Score=97.66  Aligned_cols=63  Identities=19%  Similarity=0.402  Sum_probs=47.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...++++|++|+++++|++|+++.++ .+.+|+||++.. +|+..++.+  .+++.||+++|++..
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t~  294 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCcc
Confidence            556788899999999999999996221 123899999985 344444443  378999999999864

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.04  E-value=9.3e-09  Score=92.36  Aligned_cols=38  Identities=37%  Similarity=0.476  Sum_probs=34.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .+++||+|||+|++|+++|+.|++ |.+|+|+|+.....
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            457899999999999999999999 99999999997654

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.03  E-value=7.8e-09  Score=94.11  Aligned_cols=43  Identities=30%  Similarity=0.397  Sum_probs=38.3

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      |+++|||||||+|.+|+++|..|++ |.||++|||.+...+...
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            3568999999999999999999999 999999999988765444

>PRK08244 hypothetical protein; Provisional

Probab=99.02  E-value=4.6e-09  Score=97.59  Aligned_cols=35  Identities=37%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            5899999999999999999999 9999999998654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.01  E-value=3e-09  Score=99.21  Aligned_cols=35  Identities=40%  Similarity=0.669  Sum_probs=32.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||||||||.||+.||+.+|+ |.+|+|||+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            347999999999999999999999 99999999874

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.01  E-value=4.7e-09  Score=95.30  Aligned_cols=39  Identities=33%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++.++||+|||+|++|+++|..|++ |++|+|+||.+..
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            34557999999999999999999999 9999999999754

>PRK06126 hypothetical protein; Provisional

Probab=99.00  E-value=1.8e-08  Score=94.72  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=33.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +.++||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            457899999999999999999999 999999999854

>PLN02985 squalene monooxygenase

Probab=99.00  E-value=1.5e-08  Score=94.21  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+||||||+|++|+++|+.|++ |.+|+||||...
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            457999999999999999999999 999999999743

>TIGR02730 carot_isom carotene isomerase

Probab=99.00  E-value=5.5e-09  Score=97.06  Aligned_cols=73  Identities=23%  Similarity=0.335  Sum_probs=51.4

Q ss_pred             eEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          188 GTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       188 ~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +.+++.+|.......+.+.+++.|++|+++++|++|..+++     ++.+|++.  +|+.  +.     ++.||+|+|..
T Consensus       220 g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~~-----ad~vV~a~~~~  285 (493)
T TIGR02730       220 GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--IY-----AKRIVSNATRW  285 (493)
T ss_pred             eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--EE-----cCEEEECCChH
Confidence            33444555533223356677888999999999999998875     88898876  3543  33     58899999987


Q ss_pred             ccHHHHh
Q 045695          268 GSPQLLM  274 (277)
Q Consensus       268 ~tp~lLl  274 (277)
                      .+-..|+
T Consensus       286 ~~~~~Ll  292 (493)
T TIGR02730       286 DTFGKLL  292 (493)
T ss_pred             HHHHHhC
Confidence            6665443

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.98  E-value=4e-09  Score=89.42  Aligned_cols=50  Identities=24%  Similarity=0.468  Sum_probs=42.7

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      .-++|..+++|++|+.+++     +|.||++.|.+|+...+.     .+.||+|+|||+-
T Consensus       158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~y  207 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGY  207 (477)
T ss_pred             HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCc
Confidence            4689999999999996555     999999999877766554     6899999999986

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.98  E-value=9.8e-09  Score=92.57  Aligned_cols=36  Identities=36%  Similarity=0.496  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            457899999999999999999999 999999999864

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.96  E-value=3.5e-08  Score=88.18  Aligned_cols=64  Identities=31%  Similarity=0.419  Sum_probs=49.4

Q ss_pred             HHhh-cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEY-ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~-~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++.. .++.|++++++++|++|...++     .-.-|.+++ ..+...+++     ++-|++.||| .+=.||++||
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~d-----g~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg  252 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGD-----GRWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG  252 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCC-----CCEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC
Confidence            5553 4445999999999999999887     345566665 346666776     7999999999 7888888887

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.95  E-value=1.1e-08  Score=88.08  Aligned_cols=34  Identities=41%  Similarity=0.726  Sum_probs=32.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            799999999999999999999 9999999999754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.93  E-value=1.4e-08  Score=91.56  Aligned_cols=31  Identities=45%  Similarity=0.813  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      |||||||+|++|+++|+.|++ |.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            799999999999999999999 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.93  E-value=3.3e-08  Score=92.87  Aligned_cols=37  Identities=38%  Similarity=0.500  Sum_probs=34.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||+|||+|++|+++|..|++ |.+|+||||....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            457899999999999999999999 9999999999654

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.93  E-value=3.9e-08  Score=89.07  Aligned_cols=34  Identities=38%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +|||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            5899999999999999999999 999999999863

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.92  E-value=5.8e-09  Score=96.56  Aligned_cols=38  Identities=34%  Similarity=0.552  Sum_probs=35.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ..+||||||||.+|+++|..||+ |++|+|+||.....+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            36899999999999999999999 999999999887765

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.91  E-value=9.5e-10  Score=89.86  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      .+++.+++++++++|+++..+++     + .-|++.  ++  .++.     ++.||+|+|.+..|+++.
T Consensus        91 ~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~~--~~--~~~~-----a~~VVlAtG~~~~p~~p~  144 (203)
T PF13738_consen   91 YAERFGLEIRFNTRVESVRRDGD-----G-WTVTTR--DG--RTIR-----ADRVVLATGHYSHPRIPD  144 (203)
T ss_dssp             HHHHTTGGEETS--EEEEEEETT-----T-EEEEET--TS---EEE-----EEEEEE---SSCSB---S
T ss_pred             HHhhcCcccccCCEEEEEEEecc-----E-EEEEEE--ec--ceee-----eeeEEEeeeccCCCCccc
Confidence            56667888999999999999987     3 334443  45  3444     589999999998998763

...

>PRK06847 hypothetical protein; Provisional

Probab=98.91  E-value=2.6e-08  Score=89.15  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....||+|||+|++|+++|+.|++ |++|+|+||....
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            346799999999999999999999 9999999998653

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.91  E-value=2.8e-08  Score=89.38  Aligned_cols=37  Identities=35%  Similarity=0.613  Sum_probs=33.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++++||+|||+|++|+++|+.|++ |.+|+|+||+...
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            347899999999999999999999 9999999999664

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.90  E-value=4.5e-09  Score=92.78  Aligned_cols=36  Identities=36%  Similarity=0.589  Sum_probs=31.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +|||+|||+|++|+++|..|++ |++|+|+||.+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence            5899999999999999999999 99999999987653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.90  E-value=4.7e-08  Score=88.06  Aligned_cols=36  Identities=39%  Similarity=0.517  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +.+|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            457999999999999999999999 999999999853

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.89  E-value=3.2e-09  Score=92.77  Aligned_cols=55  Identities=24%  Similarity=0.354  Sum_probs=41.9

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC----CCce-------EEEEeecCCCcEEEEecCccc
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA----TGAK-------HRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~----~g~~-------~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      ..++..|++|.++..+.++++++++    .|.||...|-    +|..       -.+     .++..|+|-|.-+
T Consensus       191 ~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~-----hak~TifAEGc~G  256 (621)
T KOG2415|consen  191 EKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF-----HAKVTIFAEGCHG  256 (621)
T ss_pred             HHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee-----cceeEEEeccccc
Confidence            4778899999999999999999887    9999999862    2321       122     2688888877644

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=2.5e-08  Score=94.10  Aligned_cols=58  Identities=19%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|+.++.+++|+.+++|    +|+||.+.+ .+++.+.+.     ++.|||||||++.
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  190 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR  190 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence            445566789999999999999987554    999999976 457666665     7899999999874

>PRK06184 hypothetical protein; Provisional

Probab=98.88  E-value=6.4e-08  Score=90.16  Aligned_cols=35  Identities=34%  Similarity=0.589  Sum_probs=32.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++||+|||+|++|+++|..|++ |.+|+||||.+..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            6899999999999999999999 9999999998654

>PRK06834 hypothetical protein; Provisional

Probab=98.88  E-value=3.6e-08  Score=91.38  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+|+||||....
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~   38 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQ   38 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            36899999999999999999999 9999999998653

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.87  E-value=2e-08  Score=92.68  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||||||+|++|+.+|.+|++ |++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            347999999999999999999999 99999999874

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.87  E-value=9.1e-09  Score=91.29  Aligned_cols=49  Identities=16%  Similarity=0.387  Sum_probs=36.9

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ....+|++|+ +.+|++|+.+++     +|.||...  +|..  +.     ++.||+|||.|..
T Consensus       105 l~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl~  153 (392)
T PF01134_consen  105 LESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFLN  153 (392)
T ss_dssp             HHTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGBT
T ss_pred             HhcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEecccccC
Confidence            3456899996 679999999887     99998886  4543  43     5999999999554

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.87  E-value=6.2e-08  Score=87.28  Aligned_cols=37  Identities=35%  Similarity=0.439  Sum_probs=34.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +.++||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            356899999999999999999999 9999999999764

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.86  E-value=2.2e-08  Score=91.88  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ....+|+|||+|++|+++|++|.+ |++|+|+||+....
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG   46 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG   46 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            346799999999999999999999 99999999997654

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.85  E-value=4.8e-08  Score=88.15  Aligned_cols=37  Identities=30%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+..||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            346799999999999999999999 9999999998643

>PRK07190 hypothetical protein; Provisional

Probab=98.83  E-value=3.3e-08  Score=91.53  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +..+||||||+|++|+++|+.|++ |.+|+||||.+.+
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            346899999999999999999999 9999999999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.82  E-value=4.6e-08  Score=88.24  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5799999999999999999999 999999999974

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.82  E-value=6.2e-08  Score=87.62  Aligned_cols=33  Identities=33%  Similarity=0.540  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      |||+|||+|++|+++|..|++ |  .+|+|+||.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            799999999999999999999 7  89999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=8e-08  Score=88.82  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=32.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+||+||||+|++|+.+|..|++ |++|+|+|++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            458999999999999999999999 9999999986

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.82  E-value=9.5e-08  Score=87.37  Aligned_cols=40  Identities=28%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~~~~~   68 (277)
                      ..+.+||+|||+|++|+++|+.|.+ |.+ ++|+||.....+
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg   46 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG   46 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence            3568899999999999999999999 987 999999987654

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.81  E-value=1e-07  Score=85.49  Aligned_cols=33  Identities=33%  Similarity=0.609  Sum_probs=31.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            89999999999999999999 9999999999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08013 oxidoreductase; Provisional

Probab=98.81  E-value=1.1e-07  Score=86.11  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++||+|||+|++|+++|+.|++ |++|+||||.+..
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            5899999999999999999999 9999999998754

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.80  E-value=1.2e-08  Score=94.94  Aligned_cols=72  Identities=19%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             EEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          189 TIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       189 ~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      .+++..|.......+...+++.|++|+++++|++|..+++     ++++|++.  +|+.  +.     ++.||+|++...
T Consensus       211 ~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~~-----ad~VI~a~~~~~  276 (502)
T TIGR02734       211 VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--LD-----ADAVVSNADLHH  276 (502)
T ss_pred             EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--EE-----CCEEEECCcHHH
Confidence            3344444432222355566778999999999999998876     88888775  4543  33     688999998767


Q ss_pred             cHHHHh
Q 045695          269 SPQLLM  274 (277)
Q Consensus       269 tp~lLl  274 (277)
                      +...|+
T Consensus       277 ~~~~l~  282 (502)
T TIGR02734       277 TYRRLL  282 (502)
T ss_pred             HHHHhc
Confidence            765554

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.80  E-value=7.7e-08  Score=87.00  Aligned_cols=32  Identities=38%  Similarity=0.607  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +||||||+|++|+++|+.|++ |++|+||||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            599999999999999999999 99999999974

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.80  E-value=6.8e-08  Score=88.47  Aligned_cols=34  Identities=44%  Similarity=0.616  Sum_probs=32.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +|||||||||++|+.+|..|++ |++|+|+||++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            6999999999999999999999 999999999853

>PRK09126 hypothetical protein; Provisional

Probab=98.80  E-value=1.4e-07  Score=85.04  Aligned_cols=35  Identities=31%  Similarity=0.500  Sum_probs=33.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++||||||+|++|+++|+.|++ |++|+|+||....
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            6899999999999999999999 9999999999763

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.79  E-value=2e-07  Score=83.96  Aligned_cols=36  Identities=36%  Similarity=0.465  Sum_probs=33.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+||||||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            346899999999999999999999 999999999854

>PRK07208 hypothetical protein; Provisional

Probab=98.79  E-value=1e-07  Score=88.25  Aligned_cols=39  Identities=31%  Similarity=0.332  Sum_probs=35.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ....||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            456799999999999999999999 999999999877654

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.79  E-value=1.8e-08  Score=83.58  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +++|||+|++|+++|+.|.+ |..|+|+|||.-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            69999999999999999999 999999999954

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.79  E-value=1.2e-07  Score=85.16  Aligned_cols=33  Identities=39%  Similarity=0.660  Sum_probs=31.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~   66 (277)
                      ||+|||+|++|+++|+.|++ | .+|+|+||....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            89999999999999999999 9 999999999664

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.77  E-value=1.3e-07  Score=87.07  Aligned_cols=35  Identities=31%  Similarity=0.466  Sum_probs=32.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||+|||+|++|+.+|+.|++ |++|+|+|++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~   39 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN   39 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            46999999999999999999999 999999999744

>PLN02697 lycopene epsilon cyclase

Probab=98.77  E-value=9.4e-08  Score=88.88  Aligned_cols=33  Identities=33%  Similarity=0.466  Sum_probs=31.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..|||||||+|++|+++|+.|++ |++|+|||+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            46999999999999999999999 9999999986

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.75  E-value=8.4e-08  Score=86.45  Aligned_cols=32  Identities=44%  Similarity=0.649  Sum_probs=31.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+||+|||+|++|+++|..|++ |++|+||||.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            5799999999999999999999 9999999998

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.75  E-value=8.3e-08  Score=88.08  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +||++|||+|++|+.+|+.|++ |++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            6999999999999999999999 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.75  E-value=8.4e-08  Score=88.44  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.+|||||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus         2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            347999999999999999999999 99999999874

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.74  E-value=2.4e-07  Score=83.36  Aligned_cols=33  Identities=33%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ++||+|||+|++|+++|+.|++ |++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4899999999999999999999 99999999875

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.73  E-value=3.2e-07  Score=86.36  Aligned_cols=37  Identities=27%  Similarity=0.464  Sum_probs=34.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +.++||+|||+|++|+++|+.|++ |.+|+|+||....
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            467899999999999999999999 9999999998643

>PRK07236 hypothetical protein; Provisional

Probab=98.72  E-value=1.9e-07  Score=84.09  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +..||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            35799999999999999999999 999999999854

>PRK07588 hypothetical protein; Provisional

Probab=98.72  E-value=1.8e-07  Score=84.37  Aligned_cols=32  Identities=34%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            89999999999999999999 999999999854

>PRK11445 putative oxidoreductase; Provisional

Probab=98.72  E-value=3.3e-07  Score=81.51  Aligned_cols=34  Identities=35%  Similarity=0.525  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~   66 (277)
                      |||+|||+|++|+++|+.|++..+|+||||.+..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhccCCEEEEECCCcc
Confidence            7999999999999999999887899999998653

>PTZ00367 squalene epoxidase; Provisional

Probab=98.71  E-value=2.1e-07  Score=87.37  Aligned_cols=34  Identities=50%  Similarity=0.660  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|++|+++|+.|++ |++|+|+||..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            57999999999999999999999 99999999975

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.70  E-value=2.7e-07  Score=87.11  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=46.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.+++     +|+||.+.+ .+++.+.+.     ++.|||||||++.
T Consensus       125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~  182 (565)
T TIGR01816       125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR  182 (565)
T ss_pred             HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence            44556678999999999999998754     999999976 356666665     6999999999874

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.69  E-value=2.4e-07  Score=83.57  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999 999999999975

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.69  E-value=1.5e-07  Score=86.86  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             eeeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEE
Q 045695          186 IGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIV  262 (277)
Q Consensus       186 ~~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVl  262 (277)
                      .++.+.+.||..-+...   +...+++.|+.|.++|.|++|....+     +..||+..  .|..+        +..||-
T Consensus       173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~ie--------t~~~VN  237 (856)
T KOG2844|consen  173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSIE--------TECVVN  237 (856)
T ss_pred             eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Cccee--------cceEEe
Confidence            35566677887655543   44578889999999999999999887     55588887  46543        378999


Q ss_pred             ecCccc
Q 045695          263 SAGALG  268 (277)
Q Consensus       263 AaG~~~  268 (277)
                      |||-+.
T Consensus       238 aaGvWA  243 (856)
T KOG2844|consen  238 AAGVWA  243 (856)
T ss_pred             chhHHH
Confidence            999865

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.68  E-value=3.4e-07  Score=84.54  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=31.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+||+||||+|++|++||..|++ |.+|+|+|++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            36999999999999999999999 9999999986

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.68  E-value=3.6e-07  Score=84.38  Aligned_cols=32  Identities=38%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +|||+|||+|++|+.||..|++ |++|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5999999999999999999999 9999999974

>PLN02507 glutathione reductase

Probab=98.66  E-value=4.8e-07  Score=84.13  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+||+||||+|++|..+|.+|++ |.+|+|+|+.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            457999999999999999999999 9999999973

>PLN02463 lycopene beta cyclase

Probab=98.66  E-value=1.6e-07  Score=85.85  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|||+|||+|++|+++|..|++ |++|+|||+.+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            346899999999999999999999 999999999743

>PRK06753 hypothetical protein; Provisional

Probab=98.65  E-value=6.7e-07  Score=80.03  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ||+|||+|++|+++|+.|++ |++|+|+||.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            79999999999999999999 9999999999764

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.65  E-value=5.2e-07  Score=80.94  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +||+|||+|++|+++|+.|++ |++|+|+|+.+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~   35 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV   35 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence            699999999999999999999 999999999853

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.65  E-value=2.4e-07  Score=80.09  Aligned_cols=32  Identities=41%  Similarity=0.577  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |||+|||+|++|+++|..|++ |.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            799999999999999999999 99999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.64  E-value=7.1e-07  Score=80.91  Aligned_cols=32  Identities=38%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+||+|||+|++|+++|..|++ |++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            6899999999999999999999 9999999996

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.61  E-value=2.4e-08  Score=93.01  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .|+|||+|++|+++|+.|.+ |.+|+++||.+...+
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG   38 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG   38 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc
Confidence            58999999999999999999 999999999987654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.60  E-value=3.7e-07  Score=85.32  Aligned_cols=33  Identities=42%  Similarity=0.711  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      |||||||+|.+|+.+|..+++ |.+|+|||++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccc
Confidence            799999999999999999999 999999999743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06996 hypothetical protein; Provisional

Probab=98.60  E-value=8.4e-07  Score=80.25  Aligned_cols=36  Identities=28%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-C----CcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g----~~VlvlE~g~~   65 (277)
                      .+++||+|||+|++|+++|+.|++ |    ++|+|+|+...
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            457899999999999999999999 8    36999999854

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.60  E-value=6.2e-07  Score=81.77  Aligned_cols=35  Identities=37%  Similarity=0.603  Sum_probs=33.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+||+||||+|++|-.+|.++++ |.||.++|++.
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            458999999999999999999999 99999999995

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.59  E-value=5.1e-07  Score=84.44  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...|||+|||||++|+++|..|++ |++|+|+|+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~  243 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER  243 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            447999999999999999999999 9999999753

>PRK05868 hypothetical protein; Validated

Probab=98.57  E-value=1.5e-06  Score=77.86  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ||+|||+|++|+++|+.|++ |++|+|+||.+..
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            89999999999999999999 9999999998653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.55  E-value=2.3e-06  Score=85.77  Aligned_cols=63  Identities=22%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ++...++.|+++++++.|.++.-+ +     ++.+|++...++...++.     ++.|+++.|-.-...|+...
T Consensus       357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i~-----~D~V~va~G~~Pnt~L~~~l  419 (985)
T TIGR01372       357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRLE-----ADALAVSGGWTPVVHLFSQR  419 (985)
T ss_pred             HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEEE-----CCEEEEcCCcCchhHHHHhc
Confidence            445566789999999999998633 2     777888874334445565     69999999987777776544

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.55  E-value=8.2e-07  Score=82.98  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      ...|||+|||+|++|+++|..|++ |++|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            447999999999999999999999 999999974

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.55  E-value=1.3e-06  Score=77.78  Aligned_cols=200  Identities=18%  Similarity=0.197  Sum_probs=102.3

Q ss_pred             cCCCCCCccEEEECCChhhHHHHhhhhC------CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCc
Q 045695           26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDG   99 (277)
Q Consensus        26 ~~~~~~~~DviIIGsG~aG~~aA~~La~------g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (277)
                      +..+...+|+||||+|++|+.+|++++.      ..+|++||+|..........    ..          -++..+..-.
T Consensus        12 ~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~----~~----------~~~~~c~~~~   77 (486)
T COG2509          12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPK----DE----------KKLEKCPKCD   77 (486)
T ss_pred             HHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccc----cc----------cchhhcCCCC
Confidence            4455678999999999999999999984      36899999997653211100    00          0000000000


Q ss_pred             eeecCCceecccccccCeeEe-cCCh-hhhhc--CCCChhhHhhHHHH----hhhhcccCCC----CchhHHHHH-HHHH
Q 045695          100 VINSRARVLGGGSCLNAGFYT-RAAP-YYVRE--TGWDERLVNESYQW----VEKVVAFEPP----MRQWQSAVR-DGLV  166 (277)
Q Consensus       100 ~~~~~~~~~GG~s~~~~~~~~-~~~~-~~~~~--~gw~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~-~~~~  166 (277)
                       .-....++||.+.+..+.+- ++.. .+++.  .+|.     ++++.    .+..+++...    ..+....+. ..+.
T Consensus        78 -~~~I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~-----~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~  151 (486)
T COG2509          78 -PCPIVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTD-----EFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFR  151 (486)
T ss_pred             -CceeEecccccccccccceecccccccchhhhhCChH-----HHHHHHhccchhheecCCCcCcccCCchhhhhHHHHH
Confidence             11122556777777666554 2221 11111  0111     11111    1112222211    122223333 2233


Q ss_pred             HcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 045695          167 EVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA  246 (277)
Q Consensus       167 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~  246 (277)
                      +.|.+..-    ........|     ++.-+.....+.+..+..|++|+++++|++|++.++     .+.+|...  +|.
T Consensus       152 aa~a~~ei----l~~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~  215 (486)
T COG2509         152 AAGAGEEI----LPIYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGE  215 (486)
T ss_pred             HhCCCcee----eeccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCc
Confidence            34432100    000000111     111112222355677888999999999999999987     66677766  454


Q ss_pred             eEEEEeecCCCcEEEEecCccc
Q 045695          247 KHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       247 ~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      .  +.     ++.||||-|=.+
T Consensus       216 ~--i~-----~~~vvlA~Grsg  230 (486)
T COG2509         216 E--IE-----ADYVVLAPGRSG  230 (486)
T ss_pred             E--Ee-----cCEEEEccCcch
Confidence            3  33     589999999643

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.54  E-value=8.7e-07  Score=82.88  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=54.2

Q ss_pred             eeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEE
Q 045695          187 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIV  262 (277)
Q Consensus       187 ~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVl  262 (277)
                      ++.+++ +|...+...   +...+.+.|++|+++++|++|..+++     ++.+|++.+. +++...+.     ++.||+
T Consensus       116 ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVn  184 (516)
T TIGR03377       116 GAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVIN  184 (516)
T ss_pred             EEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEE
Confidence            444444 665433322   44567778999999999999998776     8999999763 45555665     699999


Q ss_pred             ecCccccHHHHh
Q 045695          263 SAGALGSPQLLM  274 (277)
Q Consensus       263 AaG~~~tp~lLl  274 (277)
                      |||. .+..++.
T Consensus       185 AaG~-wa~~l~~  195 (516)
T TIGR03377       185 AAGI-WAGRIAE  195 (516)
T ss_pred             CCCc-chHHHHH
Confidence            9998 4566654

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=3.2e-07  Score=83.35  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +.-+|+|||+|++||++|+.|.+ |++|+|+||.+...
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG   42 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG   42 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc
Confidence            35689999999999999999999 99999999997764

>PRK07538 hypothetical protein; Provisional

Probab=98.51  E-value=2.1e-06  Score=78.09  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=30.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .||+|||+|++|+++|+.|++ |++|+|+||.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            389999999999999999999 999999999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.49  E-value=2.4e-06  Score=78.30  Aligned_cols=33  Identities=42%  Similarity=0.759  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~   65 (277)
                      |||+|||+|++|+++|+.|++     |++|+|||+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999985     899999999643

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.49  E-value=1e-07  Score=63.68  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             EECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           37 IIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        37 IIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      |||+|++|+++|+.|++ |.+|+|+|+.+....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            89999999999999999 999999999987653

...

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.48  E-value=1.4e-07  Score=86.42  Aligned_cols=38  Identities=32%  Similarity=0.410  Sum_probs=34.5

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+.++|||+|||+|++|+++|+.|++ |++|+||||...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            44578999999999999999999999 999999999743

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.44  E-value=1.9e-06  Score=77.26  Aligned_cols=33  Identities=45%  Similarity=0.717  Sum_probs=30.6

Q ss_pred             cEEEECCChhhHHHHhhh--hC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATL--SQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~L--a~-g~~VlvlE~g~~~   66 (277)
                      ||||||+|++|+++|++|  ++ |.+|+|||+....
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  77 9999999998654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.43  E-value=5.5e-06  Score=76.83  Aligned_cols=33  Identities=39%  Similarity=0.624  Sum_probs=31.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +||+||||+|++|..+|++|++ |.+|+|||+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~   35 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVT   35 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5899999999999999999999 99999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.43  E-value=3.3e-06  Score=76.73  Aligned_cols=33  Identities=39%  Similarity=0.538  Sum_probs=29.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~   66 (277)
                      .|+|||+|++|+++|+.|++ | .+|+|+||.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            58999999999999999999 8 599999998543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.37  E-value=7.3e-06  Score=75.72  Aligned_cols=31  Identities=42%  Similarity=0.685  Sum_probs=29.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            89999999999999999999 99999999874

>PLN02487 zeta-carotene desaturase

Probab=98.35  E-value=3e-05  Score=72.98  Aligned_cols=65  Identities=14%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +.+.+++.|.+|++++.|.+|..+.++.+..+|+||++.+ ++..+.+.     ++.||+|++.....+||
T Consensus       301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~-----aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVK-----ADAYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEE-----CCEEEECCCHHHHHHhC
Confidence            4456778899999999999999985321123589999853 23323343     69999999986555544

>PTZ00058 glutathione reductase; Provisional

Probab=98.34  E-value=5e-07  Score=84.83  Aligned_cols=34  Identities=38%  Similarity=0.632  Sum_probs=32.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+||+||||+|++|..+|.+|++ |.+|+|||++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            58999999999999999999999 99999999963

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.33  E-value=1.1e-05  Score=73.02  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -+|+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            379999999999999999999 9999999998643

>PRK06116 glutathione reductase; Validated

Probab=98.33  E-value=4.3e-07  Score=83.48  Aligned_cols=35  Identities=37%  Similarity=0.572  Sum_probs=32.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||+|||+|++|+.+|..|++ |++|+|+|++.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~   37 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR   37 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            347999999999999999999999 99999999963

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.30  E-value=5.7e-06  Score=71.11  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~~~   68 (277)
                      ..+||+|||+|..|+++|+.|-+     |++|+|+||......
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq  127 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ  127 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence            46899999999999999999853     699999999976543

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.30  E-value=1.6e-05  Score=76.07  Aligned_cols=37  Identities=35%  Similarity=0.474  Sum_probs=33.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~   66 (277)
                      ..++||+|||+|++|+++|+.|++  |.+|+||||.+..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            458999999999999999999998  7999999998653

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.30  E-value=6.9e-06  Score=73.18  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEE
Q 045695          158 QSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAH  236 (277)
Q Consensus       158 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~  236 (277)
                      ...+.+++.++|++..          ....+.+||...+..+... ++..+++.||+|+++++|++|  +++     + .
T Consensus        56 ~~d~~~fF~~~Gi~~~----------~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~  117 (376)
T TIGR03862        56 AVALQDWARGLGIETF----------VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-L  117 (376)
T ss_pred             HHHHHHHHHHCCCceE----------ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-E
Confidence            3556688888888521          1223456665555555544 666788899999999999999  333     2 3


Q ss_pred             EEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          237 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       237 gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      .|.+.  .+. ..+.     ++.||||+|+...|+
T Consensus       118 ~v~~~--~~~-~~~~-----a~~vIlAtGG~s~p~  144 (376)
T TIGR03862       118 RFETP--DGQ-STIE-----ADAVVLALGGASWSQ  144 (376)
T ss_pred             EEEEC--CCc-eEEe-----cCEEEEcCCCccccc
Confidence            44443  222 2343     699999999977664

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.29  E-value=6.7e-07  Score=82.59  Aligned_cols=39  Identities=33%  Similarity=0.374  Sum_probs=35.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ....+|||||||++|++||+.|.+ |.+|+|||+.++..+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            457799999999999999999999 999999999887754

>PRK06370 mercuric reductase; Validated

Probab=98.29  E-value=7.2e-07  Score=82.29  Aligned_cols=37  Identities=49%  Similarity=0.715  Sum_probs=33.4

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +..+|||||||+|++|+.+|+.|++ |++|+|+|++..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~   39 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL   39 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            3457999999999999999999999 999999999743

>PRK09897 hypothetical protein; Provisional

Probab=98.28  E-value=8.8e-06  Score=75.90  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~   67 (277)
                      .+|+|||+|++|+++|.+|.+ +  .+|+|+|++....
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            379999999999999999987 4  6999999986543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.28  E-value=5.9e-07  Score=82.57  Aligned_cols=34  Identities=38%  Similarity=0.690  Sum_probs=31.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ++|||+|||+|++|+.+|..|++ |++|+|+||+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            36999999999999999999999 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.26  E-value=7.7e-07  Score=81.60  Aligned_cols=34  Identities=41%  Similarity=0.570  Sum_probs=32.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +|||||||||++|+.+|+.|++ |++|+|+|+++.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            6999999999999999999999 999999999753

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.24  E-value=1.7e-06  Score=79.51  Aligned_cols=34  Identities=47%  Similarity=0.674  Sum_probs=27.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-C---CcEEEEcCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSPY   67 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g---~~VlvlE~g~~~~   67 (277)
                      ||+|||+|++|..+|..|++ +   .+|+|||+...+.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~   38 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR   38 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS--
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC
Confidence            79999999999999999999 7   8999999987653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.24  E-value=9.8e-06  Score=69.02  Aligned_cols=42  Identities=31%  Similarity=0.475  Sum_probs=35.4

Q ss_pred             ccCCCCCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           25 TAAQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        25 ~~~~~~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .+......||.||||+|+.|++.|++|.-   +++|.|||+-...
T Consensus        41 ~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   41 AESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            34455678999999999999999999764   8999999998553

>TIGR03452 mycothione_red mycothione reductase

Probab=98.23  E-value=1.1e-05  Score=74.15  Aligned_cols=32  Identities=28%  Similarity=0.571  Sum_probs=27.0

Q ss_pred             CccEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~   64 (277)
                      +||+||||+|++|..+|.+++ |.||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence            599999999999988864432 99999999863

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=4.7e-06  Score=75.88  Aligned_cols=35  Identities=40%  Similarity=0.563  Sum_probs=31.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..|||||||+|-||+-||...|+ |.+++||--.-.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence            45999999999999999999999 999999987744

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.21  E-value=3.5e-06  Score=74.80  Aligned_cols=58  Identities=24%  Similarity=0.355  Sum_probs=45.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +.+.+++.|..|.++..|.+|+.|.+     ++.||+..|  |+.  ++     ++.||--|+-+.|-.-|+
T Consensus       270 ia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~d--G~e--v~-----sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  270 IAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLAD--GTE--VR-----SKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             HHHHHHhccceeeehhhhhheeccCC-----eEEEEEecC--CcE--EE-----eeeeecCCchHHHHHHhC
Confidence            55678889999999999999999996     999999984  653  33     477777777777764443

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.19  E-value=1.3e-06  Score=82.25  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=32.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|||+|||||++|++||..|++ |++|+|+|++..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~   38 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF   38 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            346999999999999999999999 999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.4e-06  Score=75.62  Aligned_cols=56  Identities=20%  Similarity=0.332  Sum_probs=40.8

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      ++.++.+++++.+.+|.-++       +.+|.+++..+....+.     .+.|.++.|..-...++..
T Consensus       190 ~~~~i~~~~~~~i~ei~G~~-------v~~v~l~~~~~~~~~~~-----~~gvf~~iG~~p~~~~~~~  245 (305)
T COG0492         190 KNVKIEVLTNTVVKEILGDD-------VEGVVLKNVKGEEKELP-----VDGVFIAIGHLPNTELLKG  245 (305)
T ss_pred             hcCCeEEEeCCceeEEecCc-------cceEEEEecCCceEEEE-----eceEEEecCCCCchHHHhh
Confidence            34499999999999998443       55788886435555554     4899999998766666654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.19  E-value=7.1e-06  Score=72.55  Aligned_cols=60  Identities=18%  Similarity=0.268  Sum_probs=38.1

Q ss_pred             HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          203 LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       203 ~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      |+. .+++..-.+..+++|++|..+.+++  .....|++.+.+|....+.     ++.||||+|  .+|.
T Consensus       100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~~--~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~  160 (341)
T PF13434_consen  100 YLRWVAEQLDNQVRYGSEVTSIEPDDDGD--EDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPR  160 (341)
T ss_dssp             HHHHHHCCGTTTEEESEEEEEEEEEEETT--EEEEEEEEEETTS-EEEEE-----ESEEEE------EE-
T ss_pred             HHHHHHHhCCCceEECCEEEEEEEecCCC--ccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCC
Confidence            554 5566665588999999999987521  1466677766567666766     689999999  4554

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.16  E-value=1.7e-06  Score=80.52  Aligned_cols=61  Identities=20%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +.+.+++.|.+|+++++|++|+.+++     ++.+|.+.+. ++....+.     ++.||+++-...+.+||
T Consensus       238 L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~~-----ad~VI~~~~~~~~~~ll  299 (492)
T TIGR02733       238 LVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNVK-----ADDVVANLPPQSLLELL  299 (492)
T ss_pred             HHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEEE-----CCEEEECCCHHHHHHhc
Confidence            55566668999999999999999886     8888888752 12223444     68899988876555543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.16  E-value=1.9e-06  Score=73.40  Aligned_cols=36  Identities=33%  Similarity=0.661  Sum_probs=33.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +|+||||||.+|++.|..|++ |.+|+||||.+...+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence            799999999999999999999 999999999877654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.16  E-value=1.9e-06  Score=76.93  Aligned_cols=36  Identities=44%  Similarity=0.731  Sum_probs=32.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +||+|||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            699999999999999999999 999999999765543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.15  E-value=1.7e-06  Score=69.50  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=31.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      +.||||||+|-+|+++||..+.   .++|.+||..-.+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP  113 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP  113 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence            4699999999999999999985   6899999998554

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.15  E-value=2.2e-05  Score=67.73  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCc
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPN   71 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~   71 (277)
                      ...++.|||+|++|+++|+.|++-++|+|.|++....+...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~   47 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence            35689999999999999999999999999999987765443

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.15  E-value=2e-06  Score=79.34  Aligned_cols=32  Identities=38%  Similarity=0.622  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +|||||||||++|+.+|++|++ |.+|+|||++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4899999999999999999999 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.13  E-value=2.1e-06  Score=77.35  Aligned_cols=32  Identities=38%  Similarity=0.593  Sum_probs=30.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            89999999999999999999 999999999864

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02676 polyamine oxidase

Probab=98.13  E-value=3.3e-06  Score=78.34  Aligned_cols=57  Identities=30%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             HHhhhhhhcccccccCcccCCCCCCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695            8 SLFVYTAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG   68 (277)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~   68 (277)
                      .+.+..++..++..+    ..+...+||||||+|++|+++|+.|++ |. +|+|+|+.....+
T Consensus         6 ~~~~~~~~~~~~~~~----~~~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676          6 SLSVLLAVHLFAVAA----MDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             HHHHHHHHHHHHHhh----hcccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            344444444454321    113457899999999999999999999 97 6999999887654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.12  E-value=1.1e-05  Score=70.36  Aligned_cols=35  Identities=31%  Similarity=0.565  Sum_probs=32.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+||++|||+|++|-.||+.+++ |++...+|+...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence            68999999999999999999999 999999999644

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.12  E-value=2.2e-06  Score=79.40  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      ..+||+||||+|++|+++|..|++ |.+|+|||+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            347999999999999999999999 999999998

>TIGR02053 MerA mercuric reductase

Probab=98.11  E-value=2.1e-06  Score=79.19  Aligned_cols=32  Identities=44%  Similarity=0.702  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |||||||+|++|+++|..|++ |++|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            799999999999999999999 99999999965

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.10  E-value=2.2e-05  Score=54.16  Aligned_cols=32  Identities=38%  Similarity=0.626  Sum_probs=30.3

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            7999999999999999999 9999999999764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.09  E-value=2.5e-06  Score=79.36  Aligned_cols=33  Identities=30%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..||+||||+|++|+.||..|++ |++|+|||++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            46999999999999999999999 9999999973

>PRK14694 putative mercuric reductase; Provisional

Probab=98.08  E-value=2.9e-06  Score=78.46  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||||||+|++|+++|..|++ |.+|+|+|++.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            458999999999999999999999 99999999974

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.08  E-value=2.6e-06  Score=78.55  Aligned_cols=33  Identities=39%  Similarity=0.656  Sum_probs=31.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+||+||||+|++|+++|..|++ |.+|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36999999999999999999999 9999999994

>PRK07233 hypothetical protein; Provisional

Probab=98.07  E-value=3.2e-06  Score=77.07  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=32.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +|||||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            58999999999999999999 999999999987654

>PLN02268 probable polyamine oxidase

Probab=98.07  E-value=3.3e-06  Score=77.22  Aligned_cols=36  Identities=39%  Similarity=0.512  Sum_probs=33.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN   69 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~   69 (277)
                      +|||||+|++|++||+.|.+ |.+|+|||+.++..+.
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr   38 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence            79999999999999999999 9999999999887653

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.06  E-value=0.00015  Score=65.92  Aligned_cols=61  Identities=23%  Similarity=0.520  Sum_probs=45.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +...++.+||+++.+++|+.|.++.++ .+.+|+++++.. +|+...|.+  ...+.|++..|..
T Consensus       213 l~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l--~~~DlV~vT~GS~  273 (500)
T PF06100_consen  213 LIRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDL--GPDDLVFVTNGSM  273 (500)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEe--CCCCEEEEECCcc
Confidence            344678899999999999999998653 345788888885 666666654  3667788777754

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.06  E-value=3.5e-06  Score=77.28  Aligned_cols=35  Identities=37%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~~   68 (277)
                      +|+|||||++|++||+.|++ |  ++|+|+|+.+...+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG   39 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG   39 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence            69999999999999999999 8  89999999877653

>PRK13748 putative mercuric reductase; Provisional

Probab=98.06  E-value=3.4e-06  Score=79.75  Aligned_cols=34  Identities=32%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|++|+++|..|++ |.+|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            46999999999999999999999 99999999973

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.04  E-value=2.9e-05  Score=68.22  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=47.9

Q ss_pred             eeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEe
Q 045695          187 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVS  263 (277)
Q Consensus       187 ~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlA  263 (277)
                      ++.+.+.+|.-.+...   +...+.+.|++++.+++|++|..+++     ++++|...  +|   .+.     ++.||+|
T Consensus       124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~~-----a~~vV~a  188 (337)
T TIGR02352       124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DVQ-----ADQVVLA  188 (337)
T ss_pred             eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EEE-----CCEEEEc
Confidence            3344445565544332   45567778999999999999998765     77777643  34   344     6999999


Q ss_pred             cCccccHHH
Q 045695          264 AGALGSPQL  272 (277)
Q Consensus       264 aG~~~tp~l  272 (277)
                      +|+ .++.+
T Consensus       189 ~G~-~~~~l  196 (337)
T TIGR02352       189 AGA-WAGEL  196 (337)
T ss_pred             CCh-hhhhc
Confidence            998 44443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=4.7e-05  Score=65.80  Aligned_cols=35  Identities=37%  Similarity=0.560  Sum_probs=32.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+||++|||+|-+|+++|+++++ |.+|.|+|..-
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f   53 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF   53 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence            358999999999999999999999 99999999873

>PLN02546 glutathione reductase

Probab=98.01  E-value=4.1e-06  Score=78.77  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      .+|||||||+|++|..+|..|++ |++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            46999999999999999999999 999999996

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.00  E-value=5e-06  Score=75.41  Aligned_cols=58  Identities=16%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL  272 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~l  272 (277)
                      +....++.|+++++++.|+++..+++     +++.+...  +++...+.     ++.||||+|.+.+.-|
T Consensus       265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i~-----AD~VVLAtGrf~s~GL  322 (422)
T PRK05329        265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPLR-----ARHFVLATGSFFSGGL  322 (422)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEEE-----CCEEEEeCCCcccCce
Confidence            44456678999999999999998765     67766532  45555565     6999999999877654

>PLN02576 protoporphyrinogen oxidase

Probab=98.00  E-value=7.2e-06  Score=76.33  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=34.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~   68 (277)
                      +..+||+|||||++|+++|+.|++  |.+|+|+|+.+...+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            456799999999999999999998  699999999877654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.99  E-value=6e-05  Score=69.10  Aligned_cols=33  Identities=15%  Similarity=0.454  Sum_probs=29.7

Q ss_pred             cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .|||||+|++|+.+|.+|.+   +.+|+|+|+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            69999999999999999987   4799999999654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.99  E-value=5.2e-06  Score=79.29  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +|||||||+|++|..+|.++++ |.+|+|||++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            7999999999999999999999 9999999975

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.97  E-value=6.1e-06  Score=74.39  Aligned_cols=34  Identities=47%  Similarity=0.629  Sum_probs=30.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC----CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~   64 (277)
                      ..+||+|||+|++|+++|+.|++    |.+|+|+||..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            36899999999999999999965    89999999963

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.97  E-value=0.00011  Score=66.13  Aligned_cols=65  Identities=23%  Similarity=0.234  Sum_probs=41.8

Q ss_pred             eEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEec
Q 045695          188 GTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSA  264 (277)
Q Consensus       188 ~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAa  264 (277)
                      +.+++.+|.-.+...   |...+.+ |++++++++|++|..+++     +   +.++..+|..  +.     ++.||+|+
T Consensus       123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~~-----a~~vV~a~  186 (381)
T TIGR03197       123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--IA-----ASVVVLAN  186 (381)
T ss_pred             ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--EE-----cCEEEEcC
Confidence            344445554433322   4456677 999999999999987655     3   3344334542  33     69999999


Q ss_pred             Cccc
Q 045695          265 GALG  268 (277)
Q Consensus       265 G~~~  268 (277)
                      |.+.
T Consensus       187 G~~~  190 (381)
T TIGR03197       187 GAQA  190 (381)
T ss_pred             Cccc
Confidence            9853

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.96  E-value=6.7e-06  Score=72.16  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=43.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCC--CceEEEEeecCCCcEEEEecCccccHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQL  272 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~--g~~~~i~~~~~~a~~VVlAaG~~~tp~l  272 (277)
                      +....++.|+++++++.++++.-+++     ++.+|++.+..  +...++.     ++.||+|+|--..+.+
T Consensus       191 ~~~~l~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i~-----~D~vv~a~G~~p~~~l  252 (321)
T PRK10262        191 LMDKVENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAI  252 (321)
T ss_pred             HHhhccCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEEE-----CCEEEEEeCCccChhH
Confidence            44456778999999999999976554     67788887532  2334554     6999999997555554

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.93  E-value=8.2e-06  Score=66.28  Aligned_cols=32  Identities=44%  Similarity=0.733  Sum_probs=29.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||+|||+|++|+.+|.+|++ +.+|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            79999999999999999999 999999988754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=8.5e-06  Score=73.96  Aligned_cols=35  Identities=31%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      -|+|+|+|+||+++|++||+ |++|+|+|+++...+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            48999999999999999999 999999999987654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.90  E-value=5.9e-05  Score=59.07  Aligned_cols=30  Identities=23%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             EEECCChhhHHHHhhhhC-C-----CcEEEEcCCCC
Q 045695           36 IIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGS   65 (277)
Q Consensus        36 iIIGsG~aG~~aA~~La~-g-----~~VlvlE~g~~   65 (277)
                      +|||+|++|++++.+|.+ .     .+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            499999999999999876 3     58999999654

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.90  E-value=8.7e-05  Score=68.09  Aligned_cols=33  Identities=33%  Similarity=0.458  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~   66 (277)
                      .|+|||+|++|+++|..|++ +  .+|+|+|+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            59999999999999999998 5  589999998653

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.00011  Score=63.66  Aligned_cols=58  Identities=22%  Similarity=0.351  Sum_probs=46.4

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +.-+|++|+++.+-++|.=|++     +|+|.+|+++ +|..+.+.+     ..|.+--|-+-++.||.
T Consensus       400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLk  458 (520)
T COG3634         400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLK  458 (520)
T ss_pred             hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhh
Confidence            4457999999999999997776     9999999985 467777753     67777777777777774

>PLN02568 polyamine oxidase

Probab=97.88  E-value=1.4e-05  Score=74.88  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-----CcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-----~~VlvlE~g~~~~~   68 (277)
                      ...||||||+|++|+++|+.|++ |     .+|+|+|+.....+
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            35799999999999999999998 7     89999999887654

>PRK14727 putative mercuric reductase; Provisional

Probab=97.88  E-value=1.4e-05  Score=74.13  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...||+||||+|++|+.+|++|++ |.+|+|+|++..
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~   50 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV   50 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            357999999999999999999999 999999999743

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.86  E-value=1.4e-05  Score=71.34  Aligned_cols=39  Identities=33%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ....||||||+|.+||++|++|.+ |++|+|||..+....
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG   44 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG   44 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence            457899999999999999999999 999999999877653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.86  E-value=1.4e-05  Score=72.03  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .||+|||||++|+.+|+.|++ |++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            499999999999999999999 9999999987654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.84  E-value=1.6e-05  Score=73.25  Aligned_cols=36  Identities=31%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~~~   68 (277)
                      .||+|||+|++|+++|+.|++     |.+|+|+|+.+...+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG   43 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG   43 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence            589999999999999999987     589999999877643

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.83  E-value=1.8e-05  Score=78.51  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=33.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ..++|+|||||+||++||+.|++ |++|+|+|+.+...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            46899999999999999999999 99999999986543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.83  E-value=2e-05  Score=75.04  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ....+|+|||||++|+++|..|++ |++|+|+||..
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            457899999999999999999999 99999999975

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.83  E-value=1.4e-05  Score=74.15  Aligned_cols=33  Identities=18%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g   63 (277)
                      .+||+||||+|++|..+|.++++  |.+|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999998  6999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.82  E-value=1.9e-05  Score=70.77  Aligned_cols=33  Identities=36%  Similarity=0.614  Sum_probs=30.3

Q ss_pred             cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      ||||||+|++|+++|++|++   |++|+|||+++..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            89999999999999999986   8999999998643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.82  E-value=1.6e-05  Score=73.30  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~~~~   68 (277)
                      +|+|||+|++|++||+.|++ |      .+|+|||+.+...+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            69999999999999999997 4      68999999877654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.80  E-value=2e-05  Score=72.59  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=32.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +|+|||+|++|+++|+.|++ |++|+|+|+.+...+
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            48999999999999999999 999999999876554

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.78  E-value=2.7e-05  Score=71.89  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....||+|||+|++|+++|+.|++ |++|+|+|+....
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            356899999999999999999999 9999999997654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.77  E-value=0.00024  Score=65.49  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  204 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR  204 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence            479999999999999999999 999999999854

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.76  E-value=2.4e-05  Score=67.12  Aligned_cols=54  Identities=13%  Similarity=0.050  Sum_probs=44.0

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      ..++.|.-++++-+|.+..+..+     +|+.|.+++  .....++     ++..|||+|+|.+--
T Consensus       267 ~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~trn--~~diP~~-----a~~~VLAsGsffskG  320 (421)
T COG3075         267 QFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTRN--HADIPLR-----ADFYVLASGSFFSKG  320 (421)
T ss_pred             HHHHcCceEecCCceeeeeeeCC-----eEEEEEecc--cccCCCC-----hhHeeeecccccccc
Confidence            55668999999999999999998     999999984  3334454     799999999987753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.74  E-value=0.00044  Score=62.09  Aligned_cols=33  Identities=30%  Similarity=0.563  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~  175 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS  175 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            479999999999999999999 999999999854

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.72  E-value=2.5e-05  Score=70.19  Aligned_cols=50  Identities=26%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             ccccCcccCCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           19 SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        19 ~~~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +.++..++......-+++|||+|++|+.||+.||+ |.+|.||||.+...+
T Consensus       111 r~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG  161 (622)
T COG1148         111 RKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG  161 (622)
T ss_pred             hhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            33333333333445689999999999999999999 999999999876653

>PRK07846 mycothione reductase; Reviewed

Probab=97.70  E-value=4e-05  Score=70.49  Aligned_cols=33  Identities=30%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             CccEEEECCChhhHHHHhhhhCCCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~   65 (277)
                      +||+||||+|++|..+|.+++ |.||+|+|++..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~~-G~~V~lie~~~~   33 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERFA-DKRIAIVEKGTF   33 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            489999999999998887632 999999998643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.68  E-value=3.5e-05  Score=69.72  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .||+|||+|.+|+.+|+.|++ |.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            489999999999999999999 999999998765

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.66  E-value=9.1e-05  Score=68.14  Aligned_cols=37  Identities=30%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|+....
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            346899999999999999999999 9999999997654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.65  E-value=4e-05  Score=69.03  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +...+++.|++++.+++|.++..+++     ++++|.+.+  ++...+.     ++.||||+|++.+..|+..
T Consensus       269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~~--g~~~~l~-----AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTRN--HRDIPLR-----ADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEecC--CccceEE-----CCEEEEccCCCcCHHHHhh
Confidence            44466778999999999999999887     888877643  3223444     6899999999877777654

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.65  E-value=4.4e-05  Score=69.31  Aligned_cols=35  Identities=37%  Similarity=0.489  Sum_probs=31.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~~   68 (277)
                      .++|||+|++|++||++|.+ +  .+|+|+|++++..+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG   39 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence            48999999999999999999 8  89999999977654

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.65  E-value=4.4e-05  Score=67.41  Aligned_cols=36  Identities=31%  Similarity=0.494  Sum_probs=32.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +-+|||||||++|+++|..|.+ |.+|+|+|+...+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR   38 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            3489999999999999999999 99999999965543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.64  E-value=5.2e-05  Score=75.47  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=34.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ....+|+|||||+||+++|+.|++ |++|+|+|+.....+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG  343 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG  343 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence            346799999999999999999999 999999999865543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.63  E-value=0.00063  Score=62.93  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            379999999999999999999 999999998754

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.62  E-value=6.2e-05  Score=73.12  Aligned_cols=38  Identities=29%  Similarity=0.417  Sum_probs=34.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+|+|||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG  275 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence            46899999999999999999999 999999999877654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.61  E-value=6.8e-05  Score=69.42  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ..++|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            46799999999999999999999 99999999986543

>PLN02529 lysine-specific histone demethylase 1

Probab=97.60  E-value=6.4e-05  Score=72.54  Aligned_cols=38  Identities=34%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...||+|||+|++|+++|..|++ |++|+|+|+.....+
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG  197 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG  197 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence            46899999999999999999999 999999999876543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.60  E-value=5.2e-05  Score=69.92  Aligned_cols=32  Identities=34%  Similarity=0.565  Sum_probs=30.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++||||+|++|+++|..|++ |.+|+||||+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            79999999999999999999 999999999754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.58  E-value=0.00087  Score=60.64  Aligned_cols=33  Identities=33%  Similarity=0.532  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            369999999999999999999 999999999865

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.58  E-value=6e-05  Score=69.77  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=44.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +.+..++.|.+|+.++.|++|..+.++.+..++++|++.+.++ ...+.     ++.||+|+....+.+||
T Consensus       225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~-----aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIK-----ADAYVAACDVPGIKRLL  289 (474)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEE-----CCEEEECCChHHHHhhC
Confidence            4455566899999999999999865200001388888864222 12343     68999999987777665

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=97.55  E-value=8.6e-05  Score=70.24  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g  129 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG  129 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            35799999999999999999999 99999999976543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.54  E-value=0.00044  Score=61.69  Aligned_cols=32  Identities=19%  Similarity=0.390  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhh---C-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLS---Q-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La---~-g~~VlvlE~g~~   65 (277)
                      .|||||+|++|+.+|.+|.   . +.+|+|+|+...
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            4899999999999999996   3 589999998855

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.54  E-value=8.6e-05  Score=71.53  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            46799999999999999999999 99999999986543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.54  E-value=8.4e-05  Score=74.59  Aligned_cols=37  Identities=27%  Similarity=0.205  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||||++|+++|..|++ |++|+|+|+.....
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            35799999999999999999999 99999999986553

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.53  E-value=9.5e-05  Score=72.37  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....+|+|||||++|+++|+.|++ |++|+|+|+....
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~  466 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI  466 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            356799999999999999999999 9999999996543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.52  E-value=0.00011  Score=67.74  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....+|+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence            346799999999999999999999 9999999998654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.52  E-value=0.0012  Score=61.21  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            489999999999999999999 999999999854

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.52  E-value=9.5e-05  Score=73.28  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=33.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ....+|+|||||++|+++|+.|++ |++|+|+|+.+...
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            345699999999999999999999 99999999987654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.49  E-value=0.00018  Score=60.68  Aligned_cols=37  Identities=24%  Similarity=0.359  Sum_probs=32.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~~~~   68 (277)
                      ...++|||+|+.|+.+||.|++ +      +.|.++|.......
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            4689999999999999999999 6      78999999876543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.49  E-value=0.0016  Score=60.97  Aligned_cols=54  Identities=15%  Similarity=0.319  Sum_probs=41.4

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .|++|++++.++++.-+++     ++++|++.+. +++...+.     ++.||+|.|..-.+.+|
T Consensus       401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i~-----~D~vi~a~G~~Pn~~~l  455 (515)
T TIGR03140       401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQLD-----LDGVFVQIGLVPNTEWL  455 (515)
T ss_pred             CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEEeCCcCCchHH
Confidence            5899999999999976554     8888988763 34445554     69999999987666655

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=0.0013  Score=60.67  Aligned_cols=33  Identities=30%  Similarity=0.632  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            379999999999999999999 999999999854

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.45  E-value=0.0022  Score=60.18  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=43.1

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      .|+++++++.++++..+++     ++++|++.+. +++..++.     .+.|++|.|....+.+|.
T Consensus       400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i~-----~D~v~~~~G~~p~~~~l~  455 (517)
T PRK15317        400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHLE-----LEGVFVQIGLVPNTEWLK  455 (517)
T ss_pred             CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeECCccCchHHh
Confidence            5999999999999986654     8899998863 45555665     599999999877666653

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0001  Score=63.56  Aligned_cols=37  Identities=32%  Similarity=0.450  Sum_probs=33.1

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..-+||.||||+|-+|+++|.++++ |.+|.+||--..
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P   53 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP   53 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence            3458999999999999999999999 999999987643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.44  E-value=0.0013  Score=60.73  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  206 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR  206 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            379999999999999999999 999999999855

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.41  E-value=0.00019  Score=66.32  Aligned_cols=38  Identities=32%  Similarity=0.486  Sum_probs=33.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~~   68 (277)
                      ....|+|||||++|+.+|..|++   |++|.|+|+.+.+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG   65 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence            45689999999999999999974   899999999987653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.41  E-value=0.0019  Score=59.88  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|+|+|+++.
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  217 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA  217 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence            389999999999999999999 999999999854

>PRK12831 putative oxidoreductase; Provisional

Probab=97.41  E-value=0.0011  Score=61.36  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..|.+ |.+|.|+++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            489999999999999999999 99999998864

>TIGR02053 MerA mercuric reductase

Probab=97.41  E-value=0.0014  Score=60.61  Aligned_cols=33  Identities=30%  Similarity=0.591  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            479999999999999999999 999999999854

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.39  E-value=0.0016  Score=59.72  Aligned_cols=34  Identities=29%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|+.|+=.|..+++ |.+|+|||+++..
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            369999999999999999999 9999999999764

>PRK06370 mercuric reductase; Validated

Probab=97.38  E-value=0.0019  Score=59.68  Aligned_cols=33  Identities=33%  Similarity=0.595  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  205 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR  205 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            479999999999999999999 999999999855

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.36  E-value=0.0004  Score=64.21  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            56799999999999999999999 99999999987543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.36  E-value=0.00027  Score=64.81  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhh-C-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La-~-g~~VlvlE~g~~~~~   68 (277)
                      ....-|+|||||++|+.+|..|+ + |++|.|+||.+.+.+
T Consensus        37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            34567999999999999999865 6 999999999988764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.35  E-value=0.00024  Score=68.39  Aligned_cols=37  Identities=27%  Similarity=0.270  Sum_probs=33.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|+.|++ |++|+|+|+.....
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            45799999999999999999999 99999999987643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.35  E-value=0.0015  Score=60.07  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            379999999999999999999 99999999874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.34  E-value=0.0002  Score=70.53  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .....|+|||+|++|+++|+.|++ |++|+|+|+..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            356789999999999999999999 99999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.32  E-value=0.00031  Score=62.55  Aligned_cols=37  Identities=27%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+.+|..|++ |.+|+|+|+.+...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            45699999999999999999999 99999999987654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.32  E-value=0.002  Score=59.41  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~  209 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR  209 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            479999999999999999999 999999999854

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.31  E-value=0.0021  Score=58.96  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            379999999999999999999 999999999855

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.30  E-value=0.0021  Score=63.54  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~  179 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM  179 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            68999999999999999999 999999999854

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.28  E-value=0.003  Score=58.54  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            379999999999999999999 999999999865

>PRK10262 thioredoxin reductase; Provisional

Probab=97.28  E-value=0.0063  Score=53.31  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ +.+|.++++.+.
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            379999999999999999999 999999999753

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.27  E-value=0.0049  Score=53.06  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.++|||+|..|+-+|..|++ +.+|.++++++
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            489999999999999999999 99999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.26  E-value=0.0032  Score=57.81  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|.+ |.+|.++++++.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            479999999999999999999 999999998754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.24  E-value=0.0028  Score=58.42  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+=+|..|++ |.+|.|||+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i  201 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            379999999999999999999 9999999998653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.24  E-value=0.0012  Score=65.01  Aligned_cols=32  Identities=16%  Similarity=0.361  Sum_probs=27.7

Q ss_pred             EEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      |||||+|++|+.+|.+|.+    +.+|+|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            6899999999999998765    4699999998764

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.24  E-value=0.00029  Score=63.42  Aligned_cols=38  Identities=34%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~   68 (277)
                      ...-++|||+|++|++||.+|-+  +.+|+|+|..++..+
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            34589999999999999999997  579999999987653

>PRK06116 glutathione reductase; Validated

Probab=97.23  E-value=0.0026  Score=58.50  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            479999999999999999999 999999998854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.22  E-value=0.00037  Score=66.99  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|+.|++ |++|+|+|+.+...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            46789999999999999999999 99999999997654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.22  E-value=0.00024  Score=64.55  Aligned_cols=43  Identities=35%  Similarity=0.382  Sum_probs=32.1

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      |+.+|||||+|.|..-+.+|..|+. |.+||.+||++...+.+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a   44 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA   44 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence            4679999999999999999999999 999999999988775443

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN03000 amine oxidase

Probab=97.22  E-value=0.00034  Score=68.36  Aligned_cols=38  Identities=32%  Similarity=0.422  Sum_probs=34.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+|+|||+|++|+.+|+.|.+ |++|+|+|+.....+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            46899999999999999999999 999999999877654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.21  E-value=0.0032  Score=58.30  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~  208 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            479999999999999999999 999999999754

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.19  E-value=0.00029  Score=69.04  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      +|+|||+|++|+++|+.|++   |++|+|+||....
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            69999999999999999997   5899999998753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.19  E-value=0.0033  Score=58.16  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~  211 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            379999999999999999999 999999998854

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.18  E-value=0.00041  Score=64.47  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=32.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+|+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            34799999999999999999999 9999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02507 glutathione reductase

Probab=97.17  E-value=0.0032  Score=58.78  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  237 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL  237 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            379999999999999999999 999999998854

>PRK14727 putative mercuric reductase; Provisional

Probab=97.16  E-value=0.004  Score=57.85  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            379999999999999999999 9999999875

>PRK07846 mycothione reductase; Reviewed

Probab=97.16  E-value=0.0038  Score=57.52  Aligned_cols=33  Identities=27%  Similarity=0.519  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            489999999999999999999 999999999854

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.15  E-value=0.0032  Score=57.89  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  200 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL  200 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            369999999999999999999 999999998854

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.14  E-value=0.0037  Score=61.55  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~  174 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG  174 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence            69999999999999999999 999999998754

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.12  E-value=0.0022  Score=63.47  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~~   66 (277)
                      .|||||+|++|+.+|..|.+     +.+|+|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            79999999999999999864     4789999999764

>PLN02976 amine oxidase

Probab=97.11  E-value=0.00052  Score=69.85  Aligned_cols=39  Identities=33%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus       691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG  730 (1713)
T ss_pred             CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence            345899999999999999999999 999999999766543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.10  E-value=0.0044  Score=56.88  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=29.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~  192 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL  192 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            79999999999999999999 999999999754

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.09  E-value=0.0064  Score=55.54  Aligned_cols=33  Identities=33%  Similarity=0.578  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            379999999999999999999 999999998854

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.06  E-value=0.00058  Score=64.73  Aligned_cols=37  Identities=30%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|+.|++ |.+|+|+|+.+...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45689999999999999999999 99999999986543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.03  E-value=0.0077  Score=55.29  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=30.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            79999999999999999999 999999999854

>PRK13984 putative oxidoreductase; Provisional

Probab=96.94  E-value=0.0011  Score=63.41  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=33.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+|+|||+|++|+++|..|++ |++|+|+|+.....
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            46789999999999999999999 99999999987653

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.001  Score=59.95  Aligned_cols=36  Identities=44%  Similarity=0.769  Sum_probs=32.6

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+..|||||||+|-||+-||...|+ |.+.++|-..
T Consensus        24 s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   24 SSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            33679999999999999999999999 9999999775

>TIGR03452 mycothione_red mycothione reductase

Probab=96.91  E-value=0.011  Score=54.50  Aligned_cols=33  Identities=24%  Similarity=0.463  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            479999999999999999999 999999998754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=96.86  E-value=0.0016  Score=59.74  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .||.+|||+|.+|+-+|..|+| |.++.++-+-...
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~   90 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPT   90 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhcCceEEEEeccccc
Confidence            4899999999999999999999 9999999887543

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.86  E-value=0.0051  Score=55.82  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=28.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC---C-CcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---N-ASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g-~~VlvlE~g~~~   66 (277)
                      ++|+|||+|++|+.+|..|.+   . .+|.|+|+...-
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            689999999999999999976   2 349999998653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.85  E-value=0.017  Score=53.36  Aligned_cols=33  Identities=36%  Similarity=0.629  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            379999999999999999999 999999999854

>PRK13748 putative mercuric reductase; Provisional

Probab=96.84  E-value=0.0082  Score=56.87  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|||+|..|+-+|..|++ |.+|.||++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            379999999999999999999 9999999985

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.81  E-value=0.0013  Score=59.44  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~~   66 (277)
                      .+|||||+|++|+.+|..|++ |.  +|+|+++....
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            479999999999999999998 75  89999998653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.79  E-value=0.021  Score=54.95  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|..|+-.|..|++ |.+|.|||+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            79999999999999999999 9999999998653

>PRK14694 putative mercuric reductase; Provisional

Probab=96.78  E-value=0.011  Score=54.80  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|++++
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            379999999999999999999 9999999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.77  E-value=0.006  Score=54.89  Aligned_cols=35  Identities=34%  Similarity=0.636  Sum_probs=28.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC--C------------CcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ--N------------ASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~--g------------~~VlvlE~g~~~   66 (277)
                      .-+++|||||++|.=.|-+|++  .            .+|+|||+++..
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            3579999999999999999976  2            278888888654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.77  E-value=0.0015  Score=57.97  Aligned_cols=36  Identities=47%  Similarity=0.817  Sum_probs=31.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-----CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-----g~~VlvlE~g~~   65 (277)
                      ...|||||||||+.|.+.|..|..     ..||+++|.+..
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            448999999999999999999875     379999999954

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.77  E-value=0.0016  Score=58.07  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCc--EEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NAS--VLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~--VlvlE~g~~~~~   68 (277)
                      ....+|+|||+|++|+++||.|++ +.+  |+|.|++++..+
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            456799999999999999999999 654  567999987654

>PLN02546 glutathione reductase

Probab=96.75  E-value=0.012  Score=55.66  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+=.|..|++ |.+|.|+|+++.
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            379999999999999999999 999999998854

>PTZ00058 glutathione reductase; Provisional

Probab=96.75  E-value=0.013  Score=55.51  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            479999999999999999999 999999999854

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.75  E-value=0.014  Score=54.33  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|||+|..|+=+|..|++ |.+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            69999999999999999999 9999999874

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.75  E-value=0.0019  Score=59.02  Aligned_cols=37  Identities=14%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....+|||||+|.+|+.+|.+|.. +.+|+|||+.+..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            345699999999999999999988 8999999988654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.65  E-value=0.016  Score=53.44  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=28.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..|++ |. +|.++++..
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999999999 87 899999863

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.63  E-value=0.011  Score=58.05  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~   64 (277)
                      -.|+|||+|..|+=+|..|.+ |.+ |.|+++..
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            379999999999999999999 986 99998873

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.62  E-value=0.016  Score=51.51  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~   64 (277)
                      .++|||+|..|+-+|..|++ |.+ |.|+++..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            69999999999999999988 886 99998763

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.55  E-value=0.02  Score=53.28  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             ccEEEECCChhhHHHHhhh---hC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATL---SQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~L---a~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..+   .+ |.+|.|+|+++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i  225 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI  225 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence            3699999999999999644   45 8999999998653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.51  E-value=0.0093  Score=54.01  Aligned_cols=33  Identities=39%  Similarity=0.658  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||++|||+|++|+++|+.|++ |.+|+|+|++..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence            699999999999999999999 999999999853

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.46  E-value=0.027  Score=52.68  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            79999999999999999999 9999999874

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.42  E-value=0.057  Score=51.19  Aligned_cols=32  Identities=31%  Similarity=0.464  Sum_probs=29.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            479999999999999999999 99999999984

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.42  E-value=0.004  Score=55.92  Aligned_cols=60  Identities=18%  Similarity=0.199  Sum_probs=41.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +....++.|+++++++.|.++..+.+     . ..|+..  +++  ++.     ++.||+|+|.-..+.++..+|
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~~--~g~--~i~-----~D~vI~a~G~~p~~~l~~~~g  248 (377)
T PRK04965        189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATLD--SGR--SIE-----VDAVIAAAGLRPNTALARRAG  248 (377)
T ss_pred             HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEEc--CCc--EEE-----CCEEEECcCCCcchHHHHHCC
Confidence            44456678999999999999986554     2 224433  454  343     589999999876667765554

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.41  E-value=0.0031  Score=57.86  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      --.|.|||||++|+++|..|+. |++|+|.|+-+...+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            3689999999999999999999 999999999877643

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.33  E-value=0.02  Score=53.09  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..+.+ |. +|.|+++.+.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            479999999999999999888 85 7999998743

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.33  E-value=0.042  Score=48.70  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=28.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~   65 (277)
                      .....|+|||||-+++-++..|.+ +.  +|.++=|+..
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            346789999999999999999998 64  8999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.30  E-value=0.043  Score=50.87  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe---C-------CCceEEEEeecCCCcEEEEecCcccc-HHHHh
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM  274 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~---~-------~g~~~~i~~~~~~a~~VVlAaG~~~t-p~lLl  274 (277)
                      +.+.|+++++++.+++|.-+++     ++++|++..   .       .++...+.     ++.||+|.|--.. ..++.
T Consensus       339 ~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i~-----~D~VI~A~G~~p~~~~l~~  407 (471)
T PRK12810        339 AHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVLP-----ADLVLLAMGFTGPEAGLLA  407 (471)
T ss_pred             HHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEEE-----CCEEEECcCcCCCchhhcc
Confidence            3446899999999999975444     898888752   1       13344554     6999999995433 33443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.27  E-value=0.035  Score=53.73  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..+.+ |. +|.++++..
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999998888 85 699988874

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.27  E-value=0.045  Score=48.80  Aligned_cols=38  Identities=34%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~   66 (277)
                      ++..+|+|.||-|+.-++.|..|.+  +.+++.|||.+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            4567999999999999999999999  5899999999754

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.26  E-value=0.005  Score=54.17  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=31.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~~   68 (277)
                      .-|+|||||+||..+|..|.+   +.+|.|+|+-+.+++
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            379999999999999999765   689999999987764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.11  E-value=0.056  Score=54.33  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||+|..|+=+|..+.+ |.+|.++.+..
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            479999999999999999999 99999998773

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.00  E-value=0.056  Score=54.76  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=26.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g   63 (277)
                      -.|+|||+|..|+=+|..+.+ |.+ |.++.+.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            479999999999999999888 874 7777654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.78  E-value=0.09  Score=48.04  Aligned_cols=32  Identities=34%  Similarity=0.768  Sum_probs=27.3

Q ss_pred             cEEEECCChhhHHHHhhhhC---------------CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---------------NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---------------g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-.|..|++               +.+|.|+|+++.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            79999999999999998873               467899988854

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.69  E-value=0.01  Score=58.86  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=34.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +-..|.|||||++|+++|-.|-+ |+-|+|-||.++..+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            34689999999999999999999 999999999988764

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0085  Score=53.03  Aligned_cols=42  Identities=31%  Similarity=0.487  Sum_probs=37.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      ..+|||||+|.|..=|..+..|+. |.+||.+||.+...+.+.
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa   44 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA   44 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence            456999999999999999999999 999999999988765443

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.64  E-value=0.0097  Score=51.49  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..|.|||+|.+|.-||+++|+ |.+|.|.|-.+..
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            468999999999999999999 9999999987543

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=0.015  Score=51.60  Aligned_cols=42  Identities=33%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      +.+|||||||.|..=...|...++ |.+||=||+....++++.
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa   48 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA   48 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccc
Confidence            468999999999999999999999 999999999988876665

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.57  E-value=0.012  Score=52.91  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .+++|||+|..|+.+|..|++ |++|+++|+.+....
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~  173 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG  173 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence            599999999999999999999 999999999987654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.48  E-value=0.079  Score=51.24  Aligned_cols=32  Identities=34%  Similarity=0.441  Sum_probs=28.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..|.+ |. +|.|+++..
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999999998 86 699998774

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.43  E-value=0.11  Score=47.21  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .+.++.|+++..++.+..+..+.+|    +++-|...|  ++.  +.     ++.||+..|.--...++
T Consensus       263 ~y~e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~d--g~~--l~-----adlvv~GiG~~p~t~~~  318 (478)
T KOG1336|consen  263 DYYENKGVKFYLGTVVSSLEGNSDG----EVSEVKLKD--GKT--LE-----ADLVVVGIGIKPNTSFL  318 (478)
T ss_pred             HHHHhcCeEEEEecceeecccCCCC----cEEEEEecc--CCE--ec-----cCeEEEeeccccccccc
Confidence            3456679999999999999998876    888888874  543  32     68899998875544443

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.28  E-value=0.022  Score=49.15  Aligned_cols=44  Identities=25%  Similarity=0.471  Sum_probs=35.6

Q ss_pred             CCCCCCccEEEECCChhhHHHHhhhhC--C-CcEEEEcCCCCCCCCC
Q 045695           27 AQPVSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGSPYGNP   70 (277)
Q Consensus        27 ~~~~~~~DviIIGsG~aG~~aA~~La~--g-~~VlvlE~g~~~~~~~   70 (277)
                      .....++.|+|||+|.+|+..|..+.+  + -+|.|||-..+....|
T Consensus        34 ~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQP   80 (446)
T KOG3851|consen   34 RFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQP   80 (446)
T ss_pred             hhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCc
Confidence            334568999999999999999999988  5 5899999876654433

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.16  E-value=0.1  Score=50.31  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..+.+ |. +|.++++..
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            479999999999999988777 84 799998874

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.11  E-value=0.021  Score=44.08  Aligned_cols=30  Identities=40%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ++|||+|..|+..|+.|++ |.+|.++-|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999 99999999986

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.031  Score=49.15  Aligned_cols=38  Identities=32%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ..|||||+|.|+.=+..+..|+- |.+|+.|||.+....
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS   43 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence            38999999999999999999999 999999999987764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=95.06  E-value=0.033  Score=50.19  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~   67 (277)
                      ...+||||||.+|+.+|..|.+ -  .+|++||+.....
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            3469999999999999999998 5  8899999997654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.01  E-value=0.024  Score=47.21  Aligned_cols=32  Identities=38%  Similarity=0.636  Sum_probs=30.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|--|...|..|++ |++|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            58999999999999999999 999999999864

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.021  Score=46.88  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      ..+.+++++++++.+.+..-|.+     .+.++++++ ..|+...+.     .+.+..+-|---.+++|
T Consensus       202 a~~npnI~v~~nt~~~ea~gd~~-----~l~~l~ikn~~tge~~dl~-----v~GlFf~IGH~Pat~~l  260 (322)
T KOG0404|consen  202 AEKNPNIEVLYNTVAVEALGDGK-----LLNGLRIKNVKTGEETDLP-----VSGLFFAIGHSPATKFL  260 (322)
T ss_pred             HhcCCCeEEEechhhhhhccCcc-----cccceEEEecccCcccccc-----cceeEEEecCCchhhHh
Confidence            56778999999999998887744     788888886 345555554     36777777754444444

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=94.95  E-value=0.079  Score=48.34  Aligned_cols=34  Identities=32%  Similarity=0.584  Sum_probs=31.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ++|||+|||+|.+|+++|+.|++ |.+|+|||++.
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            36899999999999999999999 99999999974

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.93  E-value=0.03  Score=45.26  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            4689999999999999999999 999999998864

...

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.79  E-value=0.012  Score=49.23  Aligned_cols=33  Identities=36%  Similarity=0.641  Sum_probs=29.2

Q ss_pred             EEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY   67 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~   67 (277)
                      +||||+|++|.++|-.|+.   ..+|++|.+.+..-
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vk   37 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK   37 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence            7999999999999999997   58999999886543

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=94.75  E-value=0.22  Score=44.31  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=36.4

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecC
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      ..++|+.+++++.|+....+++|     .+-|++.+ ++++.+++.     .+.+.+|.|
T Consensus       262 L~kQgikF~l~tkv~~a~~~~dg-----~v~i~ve~ak~~k~~tle-----~DvlLVsiG  311 (506)
T KOG1335|consen  262 LQKQGIKFKLGTKVTSATRNGDG-----PVEIEVENAKTGKKETLE-----CDVLLVSIG  311 (506)
T ss_pred             HHhcCceeEeccEEEEeeccCCC-----ceEEEEEecCCCceeEEE-----eeEEEEEcc
Confidence            34479999999999999998873     34456665 356666665     488888887

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.70  E-value=0.027  Score=44.00  Aligned_cols=30  Identities=37%  Similarity=0.495  Sum_probs=28.4

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |.|||+|..|.++|..|++ |++|.|..+..
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            7899999999999999999 99999999974

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.48  E-value=0.042  Score=47.91  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|...|..|++ |.+|.++.|+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999 99999999974

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=94.48  E-value=0.12  Score=47.01  Aligned_cols=47  Identities=26%  Similarity=0.453  Sum_probs=35.7

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +..+++++.++.|+++.+...        -+.+.  +|+..++       ...|||||.  +|+.|
T Consensus       138 ke~gIe~~~~t~v~~~D~~~K--------~l~~~--~Ge~~ky-------s~LilATGs--~~~~l  184 (478)
T KOG1336|consen  138 KEKGIELILGTSVVKADLASK--------TLVLG--NGETLKY-------SKLIIATGS--SAKTL  184 (478)
T ss_pred             hhcCceEEEcceeEEeecccc--------EEEeC--CCceeec-------ceEEEeecC--ccccC
Confidence            456999999999999999887        34443  5776665       689999998  55443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.31  E-value=0.04  Score=44.33  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=25.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||.|..|+.+|..||+ |++|+-+|....
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            47899999999999999999 999999998743

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.30  E-value=0.045  Score=50.51  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -|+|||.|.+|+++|+.|++ |++|.+.|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            38999999999999999999 9999999987543

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.29  E-value=0.044  Score=50.90  Aligned_cols=31  Identities=26%  Similarity=0.458  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            69999999999999999999 99999999764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.22  E-value=0.047  Score=43.74  Aligned_cols=31  Identities=32%  Similarity=0.488  Sum_probs=26.7

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      |.|||+|..|...|..++. |++|.++|+.+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            7899999999999999999 999999999743

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=94.18  E-value=0.13  Score=47.97  Aligned_cols=37  Identities=38%  Similarity=0.517  Sum_probs=33.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +.||||||||++|+++|..|++ |.+|+|+||.....+
T Consensus         1 ~~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            3589999999999999999999 999999999977654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.87  E-value=0.62  Score=41.47  Aligned_cols=27  Identities=33%  Similarity=0.666  Sum_probs=23.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-----C--CcEEEE
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-----N--ASVLLL   60 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-----g--~~Vlvl   60 (277)
                      .++|||+|.+|+-+|..|++     |  .+|.|+
T Consensus       147 ~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li  180 (364)
T TIGR03169       147 RLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI  180 (364)
T ss_pred             eEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            79999999999999999874     3  378777

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.56  E-value=0.087  Score=46.07  Aligned_cols=32  Identities=31%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|...|..|++ |++|.++.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            469999999999999999999 99999999875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.48  E-value=0.071  Score=46.55  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +|.|||+|..|...|..|++ |++|+++++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            58999999999999999999 99999999874

>PRK13984 putative oxidoreductase; Provisional

Probab=93.44  E-value=0.88  Score=43.65  Aligned_cols=22  Identities=23%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N   54 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g   54 (277)
                      -.|+|||+|..|+=+|..|++ +
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~  441 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQ  441 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhcc
Confidence            479999999999999999986 5

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=93.32  E-value=0.053  Score=48.72  Aligned_cols=29  Identities=28%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             hhhHHHHhhhhC-CCcEEEEcCCCCCCCCC
Q 045695           42 TAGCPLAATLSQ-NASVLLLERGGSPYGNP   70 (277)
Q Consensus        42 ~aG~~aA~~La~-g~~VlvlE~g~~~~~~~   70 (277)
                      ++|++||+.|++ |.+|+|+|+.+...+..
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~   30 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI   30 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence            589999999999 99999999998876533

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.31  E-value=0.074  Score=38.37  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-.|+|||+|..|..-+..|.+ |.+|+|+....
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3479999999999999999999 99999998773

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.27  E-value=0.22  Score=45.84  Aligned_cols=55  Identities=13%  Similarity=0.348  Sum_probs=39.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCc-eEEEEeecCCCcEEEEecCc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGA  266 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~-~~~i~~~~~~a~~VVlAaG~  266 (277)
                      +...+++.|.+|++++.|++|..++++    ++++|++.+.+++ .+.+.     ++.||+|+..
T Consensus       219 l~~~l~~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~  274 (453)
T TIGR02731       219 IVDYITSRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEVT-----ADAYVSAMPV  274 (453)
T ss_pred             HHHHHHhcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence            444455579999999999999876664    7999999753232 22444     6899999865

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.25  E-value=0.087  Score=45.72  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      .+.|||+|..|+..|..|++ |++|.++.|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            48999999999999999999 999999988

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=93.19  E-value=0.082  Score=45.24  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C-------CcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g-------~~VlvlE~g~~~   66 (277)
                      ..+++|||+|+.|+++|..+.+ +       .+|.|++-...+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e   45 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE   45 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence            4589999999999999977765 4       678888765443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.01  E-value=0.61  Score=44.35  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      -.++|||+|..|.-.|..+.+ + .+|+|+.+.+
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~  301 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT  301 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            368889988888888887777 6 5677777764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.00  E-value=0.1  Score=45.23  Aligned_cols=30  Identities=33%  Similarity=0.519  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+.|||+|..|...|..|++ |++|.++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            48999999999999999999 9999999984

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.81  E-value=0.11  Score=47.72  Aligned_cols=32  Identities=28%  Similarity=0.510  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||+|..|+.+|..|++ |.+|.++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999 99999999974

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.68  E-value=1.4  Score=38.46  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ||+|||+|.+.+=.|..|++ +.+|.|+=|++..
T Consensus       145 ~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~  178 (305)
T COG0492         145 DVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF  178 (305)
T ss_pred             eEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence            99999999999999999999 9999999888653

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.63  E-value=0.15  Score=39.79  Aligned_cols=29  Identities=31%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEc
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLE   61 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE   61 (277)
                      -.++|||+|..|..-|..|.+ |.+|+||.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            369999999999999999999 99999994

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.62  E-value=0.14  Score=41.78  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=28.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|||+|-.|...|..|.+ |.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            379999999999999999999 9999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.58  E-value=0.14  Score=41.89  Aligned_cols=30  Identities=20%  Similarity=0.381  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|+|||+|..|..-+..|.+ |.+|+|+...
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            69999999999999999999 9999999764

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.50  E-value=0.14  Score=44.24  Aligned_cols=31  Identities=16%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|+++++.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999 99999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.13  Score=44.42  Aligned_cols=31  Identities=16%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |.+|+++++..
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            58999999999999999999 99999999864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.48  E-value=0.12  Score=45.98  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|..|++.|..||+ |++|+-+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            47899999999999999999 99999999853

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.40  E-value=0.14  Score=38.91  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=28.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCc-EEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g   63 (277)
                      ...++|||+|-+|-.+++.|.+ |.+ |.|+-|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            4579999999999999999999 875 9999886

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.34  E-value=0.15  Score=37.35  Aligned_cols=31  Identities=29%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      |||||.|..|...|..|.+ +.+|+++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            7999999999999999999 789999999854

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=92.24  E-value=1.5  Score=44.46  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC--CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ--NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~--g~-~VlvlE~g~   64 (277)
                      -.|+|||+|..|+=+|..+.+  |. +|.++++..
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            479999999999999998876  64 799999874

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=92.18  E-value=0.48  Score=44.01  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +|+|||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence            48999999999999999999 999999999876543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.18  E-value=0.14  Score=44.12  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..-+|+|||+|..|.-+|+-+.. |.+|.++|....
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~  202 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID  202 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence            45689999999999999999998 999999999844

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.09  E-value=0.14  Score=40.38  Aligned_cols=33  Identities=18%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...|+|+|+|.+|..||..|.. |.+|.++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4589999999999999999999 99999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.04  E-value=0.15  Score=45.66  Aligned_cols=33  Identities=33%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+++|||+|.+|..+|..|.. |.+|.++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4579999999999999999999 99999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.82  E-value=0.67  Score=46.53  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD  242 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~  242 (277)
                      .+.+.|+.+.+++.-.+|+.|++|    ++.++++..
T Consensus       649 ~A~eEGV~f~~~~~P~~i~~d~~g----~v~~l~~~~  681 (1028)
T PRK06567        649 YALALGVDFKENMQPLRINVDKYG----HVESVEFEN  681 (1028)
T ss_pred             HHHHcCcEEEecCCcEEEEecCCC----eEEEEEEEE
Confidence            466789999999999999988765    999999874

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.75  E-value=0.2  Score=44.26  Aligned_cols=31  Identities=32%  Similarity=0.629  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|.+++|..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            58999999999999999999 99999999864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.71  E-value=0.21  Score=40.70  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++|+|.|..|..+|..|.+ |.+|++.++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999 99999998763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK04148 hypothetical protein; Provisional

Probab=91.64  E-value=0.15  Score=38.58  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            359999999 88888999999 999999998865

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.59  E-value=0.18  Score=43.60  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||+|..|...|..++. |++|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58899999999999999999 999999998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.56  E-value=0.24  Score=40.38  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||+|..|+.+|..|++ |. ++.|+|.....
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve   57 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVE   57 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEc
Confidence            5679999999999999999999 97 69999998543

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.55  E-value=0.19  Score=44.08  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -|.|||+|..|...|..++. |++|++.|+.+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            48999999999999999999 99999999864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.45  E-value=0.21  Score=44.84  Aligned_cols=30  Identities=30%  Similarity=0.570  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g   63 (277)
                      +++|||+|..|.++|..|++ + .+|++.+|.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            69999999999999999999 7 899999998

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.18  E-value=0.3  Score=38.67  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=29.1

Q ss_pred             CCccEEEECCCh-hhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGT-AGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~-aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ....++|||+|- +|..+|..|.+ |.+|.++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            356899999995 69999999999 9999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.04  E-value=0.26  Score=43.64  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ...|+|||+|..|+.+|..|++ |. ++.|+|....
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            5689999999999999999999 97 8999999753

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.01  E-value=0.29  Score=43.34  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||.|..|+.+|..|++ |. ++.|+|.....
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve   60 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE   60 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            4579999999999999999999 96 89999998644

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.96  E-value=0.27  Score=37.20  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=29.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      .-|+|||+|..|+.+|..|+. |. ++.|+|.....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            468999999999999999999 96 79999998654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.93  E-value=0.25  Score=42.71  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||+|..|...|..|+. |.+|+++|+.+.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            48899999999999999999 999999998743

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.84  E-value=0.32  Score=42.07  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |.+|++.++..
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58999999999999999999 99999999863

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.77  E-value=0.26  Score=44.79  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|+|.|..|..+|..|.. |.+|+++|+.+.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            379999999999999999988 999999998743

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.69  E-value=0.27  Score=42.38  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..|+|||+|.+|.++|+.|++ |. +|.|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            479999999999999999999 86 799999864

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.67  E-value=0.29  Score=41.75  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~   67 (277)
                      ...|+|||.|..|+.+|..|++ | .+++|+|......
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~   67 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV   67 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence            4579999999999999999999 9 6899999886543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.51  E-value=0.27  Score=43.22  Aligned_cols=31  Identities=35%  Similarity=0.477  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|..|.+.|..|++ |.+|.++.|..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48899999999999999999 99999999853

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=90.51  E-value=0.3  Score=42.70  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      .+.|||+|..|+++|+.|++ |  ..|+++|+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            58999999999999999999 8  58999998743

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.32  E-value=0.43  Score=36.45  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      |+|||.|..|+.+|..|+. |. ++.|++......
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~   36 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVEL   36 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence            7999999999999999999 96 799999886543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.30  E-value=0.31  Score=42.55  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=27.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      .|.|||+|..|+..|+.|+. |. +|+++|..
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48899999999999999999 76 89999984

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.22  E-value=0.28  Score=42.19  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |.+|+++|+.+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            58999999999999999999 99999998653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.19  E-value=0.27  Score=42.91  Aligned_cols=32  Identities=34%  Similarity=0.551  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -+.|+|+|..|+..|+.|++ |.+|+++=|...
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            47899999999999999999 989999988763

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.03  E-value=0.29  Score=44.62  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||.|..|++.|..|++ |++|+++++..
T Consensus         5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            58999999999999999999 99999999864

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.99  E-value=0.38  Score=38.28  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      |+|||.|..|+.+|..|++ |. ++.++|.....
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~   35 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE   35 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence            7999999999999999999 96 69999998644

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.89  E-value=0.34  Score=42.66  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|.+++|..
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            59999999999999999999 99999999963

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.88  E-value=0.32  Score=44.66  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -++|+|+|..|+++|..|++ |.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            48999999999999999999 99999999764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.75  E-value=0.44  Score=41.54  Aligned_cols=31  Identities=32%  Similarity=0.524  Sum_probs=28.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|+++++..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999 99999998753

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.73  E-value=0.32  Score=44.29  Aligned_cols=31  Identities=32%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||.|..|+..|..|++ |++|+++++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            48899999999999999999 99999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.71  E-value=0.36  Score=41.78  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=28.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~   64 (277)
                      --++|+|+|-+|.++|+.|++ |.+ |.|+.|..
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            368999999999999999999 976 99998864

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.53  E-value=0.47  Score=38.69  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      .+..|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve   57 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD   57 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence            35689999999999999999999 96 89999998654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.53  E-value=0.39  Score=41.98  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999999999999999 99999999863

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.42  E-value=0.47  Score=41.36  Aligned_cols=33  Identities=27%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..|.|||+|..|.+.|..|++ |++|.+..|...
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            469999999999999999999 999999998653

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=89.36  E-value=5.6  Score=36.14  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             CCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          192 DQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       192 ~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      ..++...+... |+.+.+.|+-++.+-.|++|..++.        -|...  +|.+..+       ++.++|||+  +|+
T Consensus       253 epd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y-------dkcLIATG~--~Pk  312 (659)
T KOG1346|consen  253 EPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY-------DKCLIATGV--RPK  312 (659)
T ss_pred             cCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-------hheeeecCc--Ccc
Confidence            34444444433 4456778999999999999998887        34444  5655553       678889995  554


Q ss_pred             H
Q 045695          272 L  272 (277)
Q Consensus       272 l  272 (277)
                      -
T Consensus       313 ~  313 (659)
T KOG1346|consen  313 K  313 (659)
T ss_pred             c
Confidence            3

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=89.25  E-value=0.39  Score=39.94  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC---cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA---SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~---~VlvlE~g~~   65 (277)
                      ..++|+|+|.+|..+|..|.+ |.   +|.|++|...
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl   62 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV   62 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence            469999999999999999999 86   5999999853

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.22  E-value=0.3  Score=42.93  Aligned_cols=33  Identities=33%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .||.|||+|..|.-||+-||- =..|.|||=.+.
T Consensus       355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             ceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            599999999999999999997 678999998754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=89.14  E-value=0.35  Score=45.12  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..-.|+|+|+|++|+.++..+.. |.+|.++|..+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35689999999999999888888 99999998864

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.12  E-value=0.34  Score=37.93  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|+|-|..|-..|..|.. |.+|.|.|..+.
T Consensus        25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            69999999999999999998 999999999854

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.06  E-value=0.57  Score=39.34  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      ...|+|||.|..|+.+|..|++ |. ++.++|......
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~   61 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL   61 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence            5689999999999999999999 84 899999886654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.73  E-value=0.51  Score=40.86  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|+. |.+|.+.|+..
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999999999999999999 99999999864

>PLN02612 phytoene desaturase

Probab=88.73  E-value=0.94  Score=43.13  Aligned_cols=51  Identities=10%  Similarity=0.199  Sum_probs=37.7

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA  266 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~  266 (277)
                      +.+..++.|.+|+++++|++|..++++    ++++|++.  +|+.  +.     ++.||+|+..
T Consensus       314 l~~~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~~-----ad~VI~a~p~  364 (567)
T PLN02612        314 IVDHFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--VE-----GDVYVSATPV  364 (567)
T ss_pred             HHHHHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--EE-----CCEEEECCCH
Confidence            444445579999999999999997664    77777775  4543  33     6899998864

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.73  E-value=0.52  Score=41.11  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      .|.|||+|..|.++|+.|++ |  .+|.++++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            48999999999999999999 8  47999999654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.72  E-value=0.49  Score=42.88  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=30.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.|+|||.|..|..+|..|.. |.+|+++|+.+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            3479999999999999999998 999999998753

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=88.54  E-value=0.56  Score=39.45  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-----------cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-----------SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-----------~VlvlE~g~~~   66 (277)
                      ....|+|||+|..|+.++..|++ |.           ++.|+|.....
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve   57 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS   57 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence            45689999999999999999997 62           88999987654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=88.47  E-value=0.47  Score=40.98  Aligned_cols=33  Identities=27%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3479999999999999999999 99999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=88.35  E-value=0.59  Score=39.38  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ....|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve   68 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS   68 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence            35789999999999999999999 85 89999988554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.24  E-value=0.46  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||+|..|+=.|..|++ +.+|.++.|+..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~  238 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRASE  238 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence            479999999999999999999 999999998753

>PRK08328 hypothetical protein; Provisional

Probab=88.23  E-value=0.62  Score=38.86  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            5679999999999999999999 95 79999877544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=87.98  E-value=0.66  Score=38.18  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||.|..|+.+|..|++ |. ++.|+|.....
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve   64 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE   64 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence            5679999999999999999999 96 69999998543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=87.78  E-value=0.62  Score=42.49  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=29.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||.|..|..+|..|.. |.+|++.|+.+.
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            369999999999999999998 999999998754

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=87.73  E-value=0.59  Score=43.36  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g   63 (277)
                      .+.|||+|..|+++|..||+ |  .+|+.+|..
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            58999999999999999998 6  779999875

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.64  E-value=0.62  Score=38.44  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.||| +|..|.+.|..|++ |++|.+..|..
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            488997 79999999999999 99999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.58  E-value=0.54  Score=43.18  Aligned_cols=31  Identities=35%  Similarity=0.597  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            58999999999999999999 99999999854

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=87.52  E-value=0.59  Score=44.07  Aligned_cols=31  Identities=32%  Similarity=0.494  Sum_probs=28.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|+|+|.+|.++|+.|++ |.+|+++.|.
T Consensus       380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~  411 (529)
T PLN02520        380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT  411 (529)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            368999999999999999999 9999999875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=87.40  E-value=0.65  Score=38.63  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve   57 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVE   57 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEc
Confidence            5689999999999999999999 95 89999887544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.27  E-value=0.64  Score=40.35  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...++|||.|.+|..+|..|.. |.+|.+.+|..
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999 99999998874

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.25  E-value=0.66  Score=42.88  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|+|.|.+|+++|..|.+ |.+|.+.|+..
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            59999999999999999999 99999999875

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.11  E-value=0.5  Score=35.99  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++|+|+|..+...|.-+.. |.+|+|+|-.+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~   33 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER   33 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence            5899999999999999998 9999999988653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=87.02  E-value=0.7  Score=39.59  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .++|+|+|-++.++++.|++ |. +|.|+.|..
T Consensus       124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            69999999999999999999 85 699999874

>PLN02494 adenosylhomocysteinase

Probab=86.98  E-value=0.73  Score=42.46  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||.|..|..+|..|.. |.+|+++|+.+.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~  288 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI  288 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            479999999999999999988 999999998754

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=86.86  E-value=0.76  Score=38.45  Aligned_cols=32  Identities=19%  Similarity=0.470  Sum_probs=28.7

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      |+|||+|..|+.++..|+. |. ++.|+|.....
T Consensus         2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve   35 (234)
T cd01484           2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTID   35 (234)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence            7999999999999999999 84 89999988654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=86.84  E-value=0.83  Score=39.58  Aligned_cols=34  Identities=26%  Similarity=0.653  Sum_probs=29.9

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG   68 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~   68 (277)
                      |+|||+|.-|+.+|..|+. |. +++++|.+.....
T Consensus         2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~s   37 (307)
T cd01486           2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYS   37 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccc
Confidence            8999999999999999999 95 8999998865543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=86.82  E-value=0.85  Score=37.66  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...-.|-|||+|..|.-.|.-.+. |++|.|+++...
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            345579999999999999999999 999999999754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=86.74  E-value=0.85  Score=36.76  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=28.4

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            347999996 9999999999999 9999999876

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=86.71  E-value=0.74  Score=39.70  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..++|+|+|-++-++++.|++ |. +|.|+.|..
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            368999999999999999999 85 799998863

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=86.61  E-value=0.81  Score=42.14  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -+|+|||+|.+|.-.|-+|++ |.+|.++=|.+..
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            589999999999999999999 9999999998764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=86.59  E-value=0.74  Score=43.10  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|-|||+|..|...|..|++ |++|.|.|+..
T Consensus         7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            48999999999999999999 99999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=86.55  E-value=0.73  Score=43.99  Aligned_cols=39  Identities=28%  Similarity=0.650  Sum_probs=33.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYGNP   70 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~~~   70 (277)
                      ..-|+|||+|.-|+.+|..|+. |. +++++|.+.....+.
T Consensus       338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL  378 (664)
T TIGR01381       338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNP  378 (664)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcc
Confidence            5689999999999999999999 95 799999987654433

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=86.52  E-value=0.76  Score=39.27  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.++|+|+|.+|.++|+.|++ |.+|.|+.|..
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999 99999998763

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.49  E-value=0.79  Score=43.51  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +-.+||+|.|..|-.+|..|.+ |++|+++|+.+.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4679999999999999999999 999999999854

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.49  E-value=0.82  Score=42.03  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|+|.|.+|+++|..|++ |.+|++.|....
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            59999999999999999999 999999997654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=86.46  E-value=0.72  Score=40.07  Aligned_cols=31  Identities=35%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      |.|||+|..|..+|..|+. ++ +|+++|....
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            4799999999999999997 76 9999999743

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.42  E-value=0.73  Score=45.11  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      --|.|||+|..|...|..++. |++|+++|....
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            359999999999999999999 999999998743

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.36  E-value=0.7  Score=39.69  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||.|..|.+.|..|.+ |.+|+++++..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999 99999999863

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=86.34  E-value=0.83  Score=41.27  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             cEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQNASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g~   64 (277)
                      .|.|||.|..|+..|..++.|++|+++|+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQNHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence            3789999999999997777799999999863

>PRK07233 hypothetical protein; Provisional

Probab=86.25  E-value=1.2  Score=40.40  Aligned_cols=56  Identities=21%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +.+.+++.|++|+++++|.+|..+++     +++++..   +++  ++.     ++.||+|+.....+.+|
T Consensus       204 l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~--~~~-----ad~vI~a~p~~~~~~ll  259 (434)
T PRK07233        204 LAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGE--EED-----FDAVISTAPPPILARLV  259 (434)
T ss_pred             HHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCc--eEE-----CCEEEECCCHHHHHhhc
Confidence            55566667899999999999998776     5655542   333  343     58999999876555543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.19  E-value=0.77  Score=44.94  Aligned_cols=32  Identities=13%  Similarity=0.273  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|.|||+|..|...|..++. |++|+++|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            359999999999999999999 99999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=86.17  E-value=0.78  Score=39.40  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      ..++|+|+|.+|.+++..|++ | .+|.|+.|..
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            469999999999999999999 9 7999998864

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=86.08  E-value=0.81  Score=42.72  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|+|+|+|.+|+.++..+.. |.+|.++|+...
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4689999999999999999888 999999998753

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=85.94  E-value=0.86  Score=37.05  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      +..|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve   55 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVS   55 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCC
Confidence            5689999999999999999999 95 69999887543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=85.91  E-value=0.93  Score=42.40  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|-|||+|..|...|..|+. |++|+|.++.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58899999999999999999 99999998753

>PRK08017 oxidoreductase; Provisional

Probab=85.90  E-value=0.91  Score=37.92  Aligned_cols=31  Identities=26%  Similarity=0.225  Sum_probs=28.0

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++|+|+ |..|..+|..|++ |.+|+++.|..
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899998 9999999999999 99999998864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=85.70  E-value=0.97  Score=37.46  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=27.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...|+|||||..++-=+..|.+ |.+|+|+-..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~   57 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK   57 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3469999999999998999999 9999999543

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=85.67  E-value=1.3  Score=39.03  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ..|.|||+|..|...|+.|+. |+ +|+|+|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            479999999999999999988 85 8999998755

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=85.26  E-value=0.99  Score=39.28  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -|-|||+|..|.-.|..+|. |++|++.|...
T Consensus         5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            58899999999999999999 89999999973

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=85.22  E-value=0.96  Score=39.10  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=28.3

Q ss_pred             EEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      |+|||+|..|+.++..|+. |. ++.|+|-....
T Consensus         2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve   35 (291)
T cd01488           2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID   35 (291)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence            7999999999999999999 84 79999887543

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=85.20  E-value=0.96  Score=42.41  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|-|||+|..|...|..|+. |++|.|.|+...
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            48899999999999999999 999999998643

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.20  E-value=0.96  Score=42.21  Aligned_cols=30  Identities=20%  Similarity=0.392  Sum_probs=27.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|+|+|.|..|++++..|.. |.+|++.|+.
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            59999999999999988888 9999999965

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=85.10  E-value=2.7  Score=40.72  Aligned_cols=56  Identities=20%  Similarity=0.360  Sum_probs=39.2

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ..++.|++++++...++|.- .+     ++.+|++.|  |...       .++-||+|+|---...+-..+
T Consensus       196 ~le~~Gi~~~l~~~t~ei~g-~~-----~~~~vr~~D--G~~i-------~ad~VV~a~GIrPn~ela~~a  251 (793)
T COG1251         196 KLEDLGIKVLLEKNTEEIVG-ED-----KVEGVRFAD--GTEI-------PADLVVMAVGIRPNDELAKEA  251 (793)
T ss_pred             HHHhhcceeecccchhhhhc-Cc-----ceeeEeecC--CCcc-------cceeEEEecccccccHhHHhc
Confidence            45667889999888888876 33     888999985  4332       368899999975544444333

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=85.00  E-value=0.95  Score=39.01  Aligned_cols=33  Identities=15%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ...++|||+|-++-++++.|++ |. +|.|+.|..
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            3469999999999999999999 85 799998863

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=84.94  E-value=0.95  Score=41.38  Aligned_cols=32  Identities=16%  Similarity=0.454  Sum_probs=28.9

Q ss_pred             EEEECCChhhHHHHhhhhC-CC------cEEEEcCCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NA------SVLLLERGGSP   66 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~------~VlvlE~g~~~   66 (277)
                      |+|||+|..|+-++..|+. |.      ++.|+|.....
T Consensus         2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie   40 (435)
T cd01490           2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIE   40 (435)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcc
Confidence            7999999999999999999 87      89999987654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=84.93  E-value=1  Score=36.63  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ..-|+|||.|..|+.+|..|+. |. ++.++|-....
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve   57 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT   57 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence            5679999999999999999999 96 69999887543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		2e-60
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		3e-60
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		9e-60
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		9e-09
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		2e-08
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		3e-08
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		4e-05
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		3e-04

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 7/262 (2%)
Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 72
Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct: 73  VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 132
Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct: 133 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 192
Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 249
Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            K E+IVSAG +G+PQLL+LSG
Sbjct: 250 -KGEVIVSAGTIGTPQLLLLSG 270

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 7/262 (2%)
Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGF 72
Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA--APYYVRETGWDER 135
              L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA  + Y      WD  
Sbjct: 73  VYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMD 132
Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G
Sbjct: 133 LVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKG 192
Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++ 
Sbjct: 193 TRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS- 249
Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            K E+IVSAG +G+PQLL+LSG
Sbjct: 250 -KGEVIVSAGTIGTPQLLLLSG 270

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score =  226 bits (576), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 115/262 (43%), Positives = 166/262 (63%), Gaps = 6/262 (2%)
Query: 19  SFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSF 78
           SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     F
Sbjct: 13  SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSDGF 72
Query: 79  GAALS-DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDER 135
              L  +    +P +RF+S DG+ + R RVLGG S +NAG Y RA       +G  WD  
Sbjct: 73  IYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMD 132
Query: 136 LVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNG 195
           LVN++Y WVE  + ++P  + WQS  +   +E GVLP NGF+ DH  GT++ G+ FD NG
Sbjct: 133 LVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNG 192
Query: 196 QRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNG 255
            RH + +LL   +P+ L + +HA+V K++F     +   A GV+++D+ G  H+A+++  
Sbjct: 193 TRHASDELLNKGDPNNLRVAVHASVEKIIFS-SNSSGVTAIGVIYKDSNGTPHQAFVRG- 250
Query: 256 PKNEIIVSAGALGSPQLLMLSG 277
            + E+IVSAG +GSPQLL+LSG
Sbjct: 251 -EGEVIVSAGPIGSPQLLLLSG 271

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 120/299 (40%), Gaps = 71/299 (23%)
Query: 33  YDYIIIGGGTAGCPLAATLSQN--ASVLLLERG------GSPYGNPNITNLGSFGAALSD 84
           YDYII GGG  G  +AA L++N    VL++E+G      G+   +PN         A   
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPN---------AYGQ 75
Query: 85  LSSTSPSQRFISEDGVINSRA------RVLGGGSCLNAGFYTRAAPYYVRETGWDERLVN 138
           +  T+  Q +++   +IN+R       + LGG + +N   +TR  P  V+   W++    
Sbjct: 76  IFGTTVDQNYLTVP-LINNRTNNIKAGKGLGGSTLINGDSWTR--PDKVQIDSWEKVFGM 132
Query: 139 ESYQW------VEKVVAFEPPMRQW------------------QSAVRDG---------- 164
           E + W      ++K  A   P                      QS  RD           
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 165 ----LVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD--LLEYANPSGLTLLLHA 218
               +  +GV     F   H  G  +     D+N  R  AA   LL     S L +L   
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQ 252
Query: 219 TVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            V KVLF+ +  + PQA GV F    G           K+E++++AG+  SP +L  SG
Sbjct: 253 MVGKVLFK-QTASGPQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSG 306

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 120/299 (40%), Gaps = 72/299 (24%)
Query: 34  DYIIIGGGTAGCPLAATLSQNA--SVLLLERGG--SPYGNPNITNLGSFGAALSDLSSTS 89
           DYII GGG  G   AA L++N   SVL++E G   S  G P I +L ++G    D+  +S
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRG-PIIEDLNAYG----DIFGSS 75
Query: 90  PSQRFISEDGVINSRARV------LGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQW 143
               + + +   N++  +      LGG + +N G +TR  P+  +   W+    NE + W
Sbjct: 76  VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTR--PHKAQVDSWETVFGNEGWNW 133
Query: 144 -----------------VEKVVA-------------------------FEPPMRQWQSAV 161
                             +++ A                         + P ++   SAV
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAV 193
Query: 162 RDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHA 218
            D     GV     F     +G  +      ++  R  AA    L  Y  P+ L +L   
Sbjct: 194 ED----RGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN-LQVLTGQ 248
Query: 219 TVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            V KVL    G   P+A GV F    G  H  Y     K+E++++AG+  SP +L  SG
Sbjct: 249 YVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG 302

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 48/277 (17%)
Query: 34  DYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALS---DLSST 88
           D +I+GGG+AG  LAA LS+  ++ VLL+E G  P  +P+I N  ++ A      D    
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 89  SPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYV---------RETGWDERLVNE 139
           + +Q   +      +R R++GG SCL+A  Y R  P            R  GWDE L   
Sbjct: 78  TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL--P 135
Query: 140 SYQWVEK-------------VVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKI 186
            +Q +E               +    P  +     R   +E G          H  G  I
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR-AFIEAGASLGLPRLEGHNSGEMI 194
Query: 187 GGT---IFDQNGQRHTAADLLEYANPSG---LTLLLHATVHKVLFRIKGKARPQAHGVVF 240
           G T   +  ++G+R TAAD        G   LT+L  + V +   +++G  + ++  VV 
Sbjct: 195 GVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRR--LKLEGN-QVRSLEVVG 251
Query: 241 RDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           R  +             ++I++ AGAL SP LLM SG
Sbjct: 252 RQGSAEVF--------ADQIVLCAGALESPALLMRSG 280

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 31  SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERG-GSPYGNPNITNLGSFGAALSDLSS 87
           S++D++I+GGGTAG  +A  L++  N +VL++E G G+P   P IT   S     +    
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 88  TSPSQRFISEDGV-----INSRARVLGGGSCLNAGFYTRAAPYYVRETGWDE 134
            +     +  D        N+R + LGG S LN  ++T    +      W+E
Sbjct: 65  WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLN--YFTWVPGHKATFDQWEE 114

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 58/293 (19%)
Query: 33  YDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAALS------- 83
           +DY+++G G AG  +AA L++  + SVL+LE G S   + N+  LG+    L+       
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS---DENV--LGAEAPLLAPGLVPNS 57
Query: 84  --DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAA----PYYVRETGWDERLV 137
             D + T+ +Q   +   +   R R+LGG S ++     R +      Y   TG +    
Sbjct: 58  IFDWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 138 NESYQWVEKVVAFEPPMR------QWQSAVR--DGLVEVGVLPYNGFTYDHLYGTK---- 185
           +   Q+V K     PP        ++  AV   +G V + +  +     D +  T     
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 186 ----------------IGGTIFDQ-NGQRHTAADLLEYANPS----GLTLLLHATVHKVL 224
                           I  +I    NGQR +++    Y  P+     L++L++A V K++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLV 235
Query: 225 FRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
                   P    V + +  GA          K E+++SAG++G+P LL LSG
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSG 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-103
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-36
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	1e-35
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	6e-33
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	3e-29
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-29
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	5e-29
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	7e-29
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	6e-14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	5e-10
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	6e-10
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	8e-06
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	9e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	1e-05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	2e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	1e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	2e-04
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	9e-04

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  311 bits (798), Expect = e-103
 Identities = 116/264 (43%), Positives = 162/264 (61%), Gaps = 7/264 (2%)

Query: 17  NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLG 76
             SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+    
Sbjct: 11  YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70

Query: 77  SFGAAL-SDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE--TGWD 133
            F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA           WD
Sbjct: 71  GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130

Query: 134 ERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQ 193
             LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD 
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190

Query: 194 NGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLK 253
            G RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A+++
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLT--ATGVIYRDSNGTPHQAFVR 248

Query: 254 NGPKNEIIVSAGALGSPQLLMLSG 277
              K E+IVSAG +G+PQLL+LSG
Sbjct: 249 --SKGEVIVSAGTIGTPQLLLLSG 270

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  135 bits (342), Expect = 2e-36
 Identities = 66/301 (21%), Positives = 107/301 (35%), Gaps = 75/301 (24%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
           YDYII GGG  G  +AA L++N    VL++E+G     +  I        A   +  T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIED---PNAYGQIFGTTV 81

Query: 91  SQRFISE----DGVIN-SRARVLGGGSCLNAGFYTRAA---------------------- 123
            Q +++     +   N    + LGG + +N   +TR                        
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMF 141

Query: 124 PYYVR----ETGWDERLVNESYQWVE--------KVVAFEPPMRQW--QSAVRDGLVEVG 169
            Y  +     T    +L                 +  A +          A+ + +  +G
Sbjct: 142 EYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALG 201

Query: 170 VLPYN---------GFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANP----SGLTLLL 216
           V P           G +            + D+N  R  AA    +  P    S L +L 
Sbjct: 202 V-PVQQDFLCGHPRGVSMIMN-------NL-DENQVRVDAAR--AWLLPNYQRSNLEILT 250

Query: 217 HATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276
              V KVLF+ +  + PQA GV F          +     K+E++++AG+  SP +L  S
Sbjct: 251 GQMVGKVLFK-QTASGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYS 305

Query: 277 G 277
           G
Sbjct: 306 G 306

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  133 bits (337), Expect = 1e-35
 Identities = 69/302 (22%), Positives = 106/302 (35%), Gaps = 76/302 (25%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYG-NPNITNLGSFGAALSDLSSTS 89
            DYII GGG  G   AA L++N   SVL++E G       P I +L     A  D+  +S
Sbjct: 20  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDL----NAYGDIFGSS 75

Query: 90  PSQRFISEDGVINSRA------RVLGGGSCLNAGFYTRAAPY-YVR------ETGWD--- 133
               + + +   N++         LGG + +N G +TR                GW+   
Sbjct: 76  VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDN 135

Query: 134 --------ERLVNESYQWVEKVVAFEPPMR--------------QWQSAVRDGLVEVGV- 170
                   ER    + + +     F                      S +   L+     
Sbjct: 136 VAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVED 195

Query: 171 --LPYN---------GFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANP----SGLTLL 215
             +P           G +           T+  ++  R  AA   E+  P      L +L
Sbjct: 196 RGVPTKKDFGCGDPHGVSMFPN-------TL-HEDQVRSDAAR--EWLLPNYQRPNLQVL 245

Query: 216 LHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 275
               V KVL   +    P+A GV F    G  H  Y     K+E++++AG+  SP +L  
Sbjct: 246 TGQYVGKVLLS-QNGTTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEY 300

Query: 276 SG 277
           SG
Sbjct: 301 SG 302

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  125 bits (316), Expect = 6e-33
 Identities = 57/303 (18%), Positives = 95/303 (31%), Gaps = 88/303 (29%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGS-PYGNPNI-TNLGSFGAALSDLS-- 86
           +D++I+GGGTAG  +A  L++N   +VL++E G   P   P I T   +     S     
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66

Query: 87  -STSPSQRFISEDGVIN-------SRARVLGGGSCLNAGFYTR---------AA------ 123
             T+                    +R + LGG S LN   +                   
Sbjct: 67  YKTTM------VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120

Query: 124 ------PYYVR----ETGWDERLVNESYQ------WVEKVVAFEPPMRQWQSAVRDGLVE 167
                 PY  +                         +         +    +  R+ L +
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPIS-----HAELIDEMAPFRENLTK 175

Query: 168 VGV---LPYN---------GFTYDHLYGTKIGGTIFDQNGQRHTAAD-LLEYANPSGLTL 214
                  P           G T+          TI+   GQR  +   +    N   +T+
Sbjct: 176 AWKSMGQPLIENIYDGEMDGLTHCCD-------TIY--RGQRSGSFLFVKNKPN---ITI 223

Query: 215 LLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274
           +      +++     +      GV    A G +   +       E+I+S G   +P+LLM
Sbjct: 224 VPEVHSKRLIINEADR---TCKGVTVVTAAGNELNFF----ADREVILSQGVFETPKLLM 276

Query: 275 LSG 277
           LSG
Sbjct: 277 LSG 279

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  114 bits (289), Expect = 3e-29
 Identities = 57/285 (20%), Positives = 88/285 (30%), Gaps = 62/285 (21%)

Query: 33  YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPS 91
           YDYII+G G  G   A  LS+    VLLLERGG        T +  +  +        P 
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67

Query: 92  Q--RFISE-DGVINSRA------RVLGGGSCLNAGFYTRAAPY-YVRETGWDE------- 134
                 ++ +     +        ++GGG+ +N   Y       +    GW         
Sbjct: 68  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 127

Query: 135 ---RLVNESYQ------------WVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYD 179
              +L   S              ++E+       + Q       G  +  +     +   
Sbjct: 128 YTSKL--SSRLPSTDHPSTDGQRYLEQSF---NVVSQLLKGQ--GYNQATINDNPNYKDH 180

Query: 180 HLYGTKIGGTIFDQ---NGQRHTAADLLEYANP----SGLTLLLHATVHKVLFRIKGKAR 232
                            NG+R        Y          T   +  V  V+    G   
Sbjct: 181 -------VFGYSAFDFLNGKRAGPVA--TYLQTALARPNFTFKTNVMVSNVVR--NGS-- 227

Query: 233 PQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            Q  GV   D T   +       PK  +I+SAGA G+ ++L  SG
Sbjct: 228 -QILGVQTNDPTLGPNGFIPVT-PKGRVILSAGAFGTSRILFQSG 270

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  114 bits (288), Expect = 4e-29
 Identities = 77/296 (26%), Positives = 114/296 (38%), Gaps = 84/296 (28%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
            D +I+GGG+AG  LAA LS++    VLL+E G  P  +P+I N     AA   L   S 
Sbjct: 18  CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNP----AAWPALQGRSY 72

Query: 91  SQRFISE-----DG--VINSRARVLGGGSCLNAGFYTRAAPY-Y---VRETG-----WDE 134
              + +E      G     +R R++GG SCL+A  Y R  P  +   V  +G     WDE
Sbjct: 73  DWDYRTEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132

Query: 135 ------RLVNESYQ-------------WVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYN- 174
                  +  E +               +        P+ +   A  +    +G LP   
Sbjct: 133 LLPVFQAI--EDHPLGGDGIHGKGGPLPIHLPADEVSPLAR---AFIEAGASLG-LPRLE 186

Query: 175 --------GFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANP-----SGLTLLLHATVH 221
                   G T + L        I   +G+R TAAD   +          LT+L  + V 
Sbjct: 187 GHNSGEMIGVTPNSL-------NIR--DGRRVTAAD--AWLTKAVRGRKNLTILTGSRVR 235

Query: 222 KVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           ++    +G    Q   +            +       +I++ AGAL SP LLM SG
Sbjct: 236 RLKL--EGN---QVRSLEVVGR-QGSAEVFAD-----QIVLCAGALESPALLMRSG 280

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  114 bits (288), Expect = 5e-29
 Identities = 56/308 (18%), Positives = 102/308 (33%), Gaps = 88/308 (28%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLS---- 86
           +DY+++G G AG  +AA L+++   SVL+LE G S                + +      
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62

Query: 87  -STSPSQRFISEDGVIN-----SRARVLGGGSCLNAGFYTR---------AA-------- 123
            +T+       + G         R R+LGG S ++     R         AA        
Sbjct: 63  YTTTA------QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116

Query: 124 -----PYYVR----ETGWDERLVNESYQ----------WVEKVVAFEPPMRQ-WQSAVRD 163
                 +  +        D    +  +            +       P         V  
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS-----LPGFPTPLDDRVLA 171

Query: 164 GLVEVGV-LPYN---------GFTYDHLYGTKIGGTIFDQNGQRHTAAD--LLEYANPSG 211
              E      +N         G ++          ++   NGQR +++   L    +   
Sbjct: 172 TTQEQSEEFFFNPDMGTGHPLGISWSIA-------SV--GNGQRSSSSTAYLRPAQSRPN 222

Query: 212 LTLLLHATVHKVLF--RIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 269
           L++L++A V K++      G    +      ++              K E+++SAG++G+
Sbjct: 223 LSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEG-APTTTVC----AKKEVVLSAGSVGT 277

Query: 270 PQLLMLSG 277
           P LL LSG
Sbjct: 278 PILLQLSG 285

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  113 bits (286), Expect = 7e-29
 Identities = 67/296 (22%), Positives = 112/296 (37%), Gaps = 78/296 (26%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
           +DYI++GGG+AG  +AA LS++   SV L+E G    G P +  L  +      L  +  
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWME----LLESGY 69

Query: 91  SQRFISE-----DGVIN-SRARVLGGGSCLNAGFYTR---------AA------------ 123
              +  E     +  +  +RA+V+GG S  N+               A            
Sbjct: 70  DWDYPIEPQENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAA 129

Query: 124 -PYYVRETGWDERLVNESYQ------WVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYN-- 174
            P Y R    ++   +  +        +  V    PP      A+ D   + G +P    
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNV----PPKDPTGVALLDACEQAG-IPRAKF 184

Query: 175 --------GFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANP----SGLTLLLHATVHK 222
                   G  +  +            +G R +++    Y +P       TLL      +
Sbjct: 185 NTGTTVVNGANFFQI-------NRRA-DGTRSSSSV--SYIHPIVEQENFTLLTGLRARQ 234

Query: 223 VLFRIKGKARPQAHGV-VFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           ++F    +      GV +   A G  HR       +NE+++S GA+ +P+LLMLSG
Sbjct: 235 LVFDADRRCT----GVDIVDSAFGHTHRLT----ARNEVVLSTGAIDTPKLLMLSG 282

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 70.5 bits (172), Expect = 6e-14
 Identities = 45/301 (14%), Positives = 83/301 (27%), Gaps = 57/301 (18%)

Query: 29  PVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGG----------------------- 64
              Y   ++IG G      A  L +     L+LE G                        
Sbjct: 2   NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61

Query: 65  --SPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRA 122
                    + +         ++   +     ++ D +     R +GGGS +N G     
Sbjct: 62  WFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEP 121

Query: 123 APYYVRETGWD---ERLVNESYQWVEKVVAFEPPMRQWQS---------AVRDGLVEVGV 170
              Y  E         + +  +     ++       +W             R+   + G+
Sbjct: 122 KRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGL 181

Query: 171 LPY-------NGFTYDHLYG-----TKIGGTIFDQNGQRHTAAD-LLEYANPSG-LTLLL 216
                      G+      G           I+  N  + +     L  A  +G +T+  
Sbjct: 182 GTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQT 241

Query: 217 HATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276
              V  +     G     A  V  +D  G       K      + + AG+LGS +LL+ +
Sbjct: 242 LHQVKTIRQTKDGG---YALTVEQKDTDGKLLAT--KEISCRYLFLGAGSLGSTELLVRA 296

Query: 277 G 277
            
Sbjct: 297 R 297

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 58.6 bits (141), Expect = 5e-10
 Identities = 48/309 (15%), Positives = 85/309 (27%), Gaps = 62/309 (20%)

Query: 23  NATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGG----------------- 64
            +           ++IG G  G   A  L+Q      ++E G                  
Sbjct: 2   PSRTLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLN 61

Query: 65  --------SPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNA 116
                   +   +  ++N   FG   S               G+   + R +GGGS +N 
Sbjct: 62  PDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGV-LDSERFSGIKVYQGRGVGGGSLVNG 120

Query: 117 GFYTRAAPYYVRE----TGWDERLVNESYQWVEKVVAFEPPMRQW--------------Q 158
           G        Y  E       +E   N+ +      +      + W              +
Sbjct: 121 GMAVTPKRNYFEEILPSVDSNEMY-NKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRK 179

Query: 159 SAVRDGLVE------VGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADL----LEYAN 208
           +A R G                      +  + +GG      G       L    L  A 
Sbjct: 180 TAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGG--EVIYGNNAGKKSLDKTYLAQAA 237

Query: 209 PSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 268
            +G   L   T+H+V           +  +   D  G       K    + +  +AG++G
Sbjct: 238 ATG--KLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVAT--KVVTADRVFFAAGSVG 293

Query: 269 SPQLLMLSG 277
           + +LL+   
Sbjct: 294 TSKLLVSMK 302

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 58.7 bits (141), Expect = 6e-10
 Identities = 42/321 (13%), Positives = 77/321 (23%), Gaps = 70/321 (21%)

Query: 13  TAALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPN 71
            ++L      +         YD +I+G G  GC  A  L      V + + G    G   
Sbjct: 27  ASSLPPLPGPDKKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI 86

Query: 72  ITNL-----------------------GSFGAALSDLSSTSPSQRFISEDGVIN------ 102
             +                         S       + + SP+    S   V N      
Sbjct: 87  GAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQ 146

Query: 103 ---------SRARVLGGGSCLNAGFYTRAAP---YYVRETGWD-------------ERLV 137
                    +  RV+GG S        R        + +   D             E   
Sbjct: 147 DPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYF 206

Query: 138 NESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQR 197
                  ++ +     + +     +    +   +P         +              R
Sbjct: 207 QTGTDQFKESIRHNLVLNKLTEEYKGQR-DFQQIPLAATRRSPTFVEWSSANTVFDLQNR 265

Query: 198 HTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGP 256
                    A      L       +V+             +   D  +G +         
Sbjct: 266 PNTD-----APEERFNLFPAVACERVVRNALNSE---IESLHIHDLISGDRFEIKAD--- 314

Query: 257 KNEIIVSAGALGSPQLLMLSG 277
               +++AGA+ + QLL+ SG
Sbjct: 315 --VYVLTAGAVHNTQLLVNSG 333

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSP---------------YGNPNITNL 75
             DY++IG G AG      LS +  V++LER   P               YG P +  L
Sbjct: 8  IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRAL 67

Query: 76 GSFGAAL 82
           +   A 
Sbjct: 68 TAASRAF 74

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSP-YGNPN 71
          YD +IIGGG AG   A  LS+    +LL++       G+  
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKP 47

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 14  AALNYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNI 72
              +   +  A AA P      +++G G+AG   +    +  A+V+L+++     GN  I
Sbjct: 103 DGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMI 162

Query: 73  TNLGSFGAALSDL 85
           +  G   A  +  
Sbjct: 163 SA-GGMNAVGTKQ 174

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 17/74 (22%)

Query: 26 AAQPVSYYDYIIIGGGTAGCPLAATLSQN--ASVLLLERGGSP---------------YG 68
              +  +DY+++G G  G   A  L      SVL+++ G +P               + 
Sbjct: 17 RGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSMAAFRTFFS 76

Query: 69 NPNITNLGSFGAAL 82
          +     +      L
Sbjct: 77 STMNRLVAGSTVRL 90

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSP 66
           D ++IG G AG   A+ ++++   V ++E+   P
Sbjct: 6  VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP 40

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLS-QNASVLLLERGGSP 66
          +D I+IGGG  G  LA+ ++ +   VLLLER   P
Sbjct: 8  FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 22 HNATAAQP----VSYYDYIIIGGGTAGCPLAATLS-QNASVLLLERGGSP 66
          H+++   P    ++     IIGGG AG     TL      V + ER   P
Sbjct: 9  HHSSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP 58

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 33  YDYIIIGGGTAGCPLAATLS---QNASVLLLERGGSPYGNPNITNLGSFGAALSDL 85
            D +IIG G AG  LAA +S     A V+LLE+   P GN  +   G   AA +  
Sbjct: 127 TDVVIIGSGGAG--LAAAVSARDAGAKVILLEKEPIPGGNTKLAA-GGMNAAETKP 179

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 24  ATAAQPVSYYDYIIIGGGTAGCPLAATLS---QNASVLLLERGGSPYGNPNITNLGSFGA 80
           A A+ P    D +++G G AG   +A +S     A V+L+E+     GN  +   G   A
Sbjct: 118 ALASAPHDTVDVVVVGSGGAG--FSAAISATDSGAKVILIEKEPVIGGNAKL-AAGGMNA 174

Query: 81  ALSDL 85
           A +D 
Sbjct: 175 AWTDQ 179

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 43/250 (17%), Positives = 64/250 (25%), Gaps = 43/250 (17%)

Query: 27  AQPVSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGNPNITNLGSFGAALS 83
                 +D ++IG G  G   A  L Q     S+LL+E GG P              A  
Sbjct: 31  HFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQD 90

Query: 84  DLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQW 143
             +       +  E          LG G  L            +      E         
Sbjct: 91  IPAGQEAQAEWTREQL-----LGALGSGKTLEVE-----DRPLLHLLPAGE--------- 131

Query: 144 VEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADL 203
                     +     A+ D    + +L         +       T          A   
Sbjct: 132 -------GSGLTPTLDALADFPEALALLDPARLPVARV--DPRALTYRP----GSLALLA 178

Query: 204 LEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVS 263
            + A   G  LLL+     V   ++       +          + RA         IIV+
Sbjct: 179 AQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRA-------GVIIVA 231

Query: 264 AGALGSPQLL 273
           AGA   P L+
Sbjct: 232 AGA-AGPALV 240

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 39.4 bits (93), Expect = 9e-04
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 15/57 (26%)

Query: 32 YYDYIIIGGGTAGCPLAATLSQN-ASVLLLER-----------GGSPYGNPNITNLG 76
          Y + IIIG G AG   AA L++   SV + +            GG   G  N TNL 
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGG---GFCNFTNLE 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.97
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.97
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.96
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.94
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.75
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.71
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.67
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.67
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.59
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.58
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.57
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.55
3dme_A	369	Conserved exported protein; structural genomics, P	99.54
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.52
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.49
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.48
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.47
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.46
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.45
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.44
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.43
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.42
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.41
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.38
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.38
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.38
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.38
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.37
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.37
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.36
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.34
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.33
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.32
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.32
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.31
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.29
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.28
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.27
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.26
3atr_A	453	Conserved archaeal protein; saturating double bond	99.23
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.22
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.19
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.18
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.17
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.16
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.15
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.12
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.11
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.1
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.09
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.08
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.06
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.02
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.02
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.02
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.98
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.97
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.97
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.96
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.96
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.93
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.91
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.89
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.89
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.87
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.87
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.86
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.85
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.85
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.85
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.85
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.81
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.8
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.79
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.78
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.76
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.74
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.74
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.73
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.73
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.71
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.7
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.69
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.69
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.69
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.68
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.68
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.67
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.64
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.63
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.62
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.62
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.6
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.56
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.54
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.53
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.51
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.49
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.48
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.46
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.44
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.4
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.39
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.36
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.35
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.31
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.31
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.31
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.28
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.27
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.27
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.26
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.26
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.26
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.26
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.25
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.25
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.24
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.24
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.24
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.24
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.24
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.23
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.23
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.23
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.22
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.22
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.2
4dna_A	463	Probable glutathione reductase; structural genomic	98.19
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.19
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.19
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.18
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.17
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.17
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.16
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.15
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.15
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.13
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.11
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.1
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.09
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.09
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.07
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.06
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.06
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.06
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.05
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.05
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.04
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.04
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.04
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.02
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.01
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.0
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.99
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.96
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.95
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.94
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.93
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.93
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.92
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.92
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.91
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.89
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.89
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.88
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.88
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.88
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.87
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.87
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.85
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.84
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.83
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.83
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.8
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.79
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.79
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.78
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.76
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.75
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.75
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.75
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.74
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.73
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.72
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.72
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.71
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.71
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.71
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.71
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.7
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.68
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.68
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.63
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.62
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.62
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.6
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.59
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.58
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.58
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.57
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.56
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.55
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.54
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.52
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.52
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.52
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.5
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.48
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.48
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.46
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.46
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.45
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.45
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.44
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.43
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.43
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.42
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.41
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.41
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.38
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.36
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.34
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.34
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.34
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.34
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.33
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.27
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.25
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.25
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.25
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.24
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.23
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.21
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.21
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.19
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.17
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.15
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.14
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.14
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.12
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.12
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.05
4dna_A	463	Probable glutathione reductase; structural genomic	97.05
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.03
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.97
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.94
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.86
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.84
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.77
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.69
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.68
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.68
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.64
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.63
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.5
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.43
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.35
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.15
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.93
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.61
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.57
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.43
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.38
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.23
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.91
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.9
4fk1_A	304	Putative thioredoxin reductase; structural genomic	94.6
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.37
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.15
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.85
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.84
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	93.82
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	93.67
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	93.6
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.51
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.49
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.48
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.47
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.23
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.99
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.84
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.82
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.8
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.74
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.74
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	92.59
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.49
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.45
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.37
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.31
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.21
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.94
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	91.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.88
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.8
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.63
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.61
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.5
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.43
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.41
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.39
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	91.27
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.14
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.14
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	91.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.13
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.99
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	90.89
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	90.85
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	90.79
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.77
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	90.75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.66
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	90.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.56
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.56
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.55
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.48
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	90.45
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.31
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	90.29
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	90.17
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.1
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.08
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.93
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.82
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.79
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	89.75
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	89.73
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	89.7
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.64
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.52
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.51
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	89.48
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.41
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.34
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.29
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.26
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	89.25
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.23
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.17
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	89.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.93
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	88.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.75
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.73
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	88.58
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	88.51
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.45
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	88.39
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.24
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	88.14
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.05
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.02
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.93
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	87.89
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.88
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	87.78
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.78
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.77
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	87.71
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.68
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.61
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	87.61
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.52
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	87.49
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.47
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.44
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	87.42
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.37
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.28
3tl2_A	315	Malate dehydrogenase; center for structural genomi	87.27
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	87.26
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.24
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	87.13
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	87.1
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.07
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	86.99
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	86.92
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	86.87
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.85
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.85
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.85
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	86.83
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.81
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	86.7
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.64
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.62
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	86.56
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.52
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	86.47
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.44
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	86.42
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	86.42
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	86.38
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.36
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	86.28
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.25
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	86.19
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.15
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	86.06
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	86.02
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	86.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	85.97
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.94
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	85.91
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	85.85
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	85.83
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	85.82
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	85.63
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.6
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	85.57
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	85.46
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	85.37
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	85.28
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	85.19
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	85.16
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	85.14
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	85.13
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	85.02
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	85.02
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	84.8
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	84.75
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	84.74
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	84.74
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	84.69
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.55
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.49
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	84.49
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	84.43
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	84.32
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	84.27
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	84.25
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	84.24
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	84.2
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	84.2
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	84.11
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	84.02
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	84.01
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	84.0
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	83.99
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	83.98
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.91
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	83.83
1lnq_A	336	MTHK channels, potassium channel related protein;	83.83
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	83.81
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	83.81
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	83.69
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	83.65
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	83.65
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	83.56
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	83.54
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	83.51
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	83.47
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	83.43
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	83.26
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	83.2
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	83.19
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	83.18
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	83.02
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	82.98
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	82.69
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	82.66
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	82.65
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	82.65
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	82.57
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	82.5
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	82.48
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	83.15
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	82.38
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	82.15
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	82.06

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=2.2e-37  Score=288.43  Aligned_cols=244  Identities=28%  Similarity=0.390  Sum_probs=180.0

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCC-CCCccccchhhhhhc---CCCCCCCccccccCCCcee
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPY-GNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVI  101 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  101 (277)
                      ....+|||||||+|.+||++|.+|+|  +.+|||||+|+... ..+.+..+..+...+   .+|.|.+.++. ..++.+.
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-~~~r~~~   93 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-TNNQTAL   93 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-TTSCCCE
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-CCCCeee
Confidence            33568999999999999999999998  79999999998432 233333343333322   26777777775 5677889


Q ss_pred             ecCCceecccccccCeeEecCChhhhhc------C-CCChhhHhhHHHHhhhhccc------------------------
Q 045695          102 NSRARVLGGGSCLNAGFYTRAAPYYVRE------T-GWDERLVNESYQWVEKVVAF------------------------  150 (277)
Q Consensus       102 ~~~~~~~GG~s~~~~~~~~~~~~~~~~~------~-gw~~~~~~~~~~~~~~~~~~------------------------  150 (277)
                      +.+|+++||+|.+|+|++.|+.+.+++.      . +|.|+++.|||++.|.....                        
T Consensus        94 ~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v  173 (583)
T 3qvp_A           94 IRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHA  173 (583)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEE
T ss_pred             ccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEEe
Confidence            9999999999999999999999865442      4 89999999999998875310                        


Q ss_pred             --C---CCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HH-hhcCCCCeEEEcCcEEEEE
Q 045695          151 --E---PPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LL-EYANPSGLTLLLHATVHKV  223 (277)
Q Consensus       151 --~---~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l-~~~~~~gv~i~~~~~V~~l  223 (277)
                        .   ....++...+.+++.++|++...++......+..........+|.|+++.. |+ +..+++|++|++++.|++|
T Consensus       174 ~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~rI  253 (583)
T 3qvp_A          174 GPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKV  253 (583)
T ss_dssp             BCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEEEE
T ss_pred             cCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEEEE
Confidence              0   112455678889999999874333221111222211222234688888765 66 4677899999999999999


Q ss_pred             EEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          224 LFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       224 ~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++++++ ...+++||++.+.+|+.+++.    ++|+||||||+|+||+|||+||
T Consensus       254 l~d~~~-~~~ra~GV~~~~~~G~~~~v~----A~kEVILsAGa~~SPqLL~lSG  302 (583)
T 3qvp_A          254 LLSQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG  302 (583)
T ss_dssp             EEECSS-SSCEEEEEEEESSTTCEEEEE----EEEEEEECSCTTTHHHHHHHTT
T ss_pred             EeccCC-CCCEEEEEEEEecCCcEEEEE----ECCEEEEeCCccCCHHHHHHcC
Confidence            998410 013999999996578888887    4578999999999999999998

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=3.1e-37  Score=286.39  Aligned_cols=257  Identities=46%  Similarity=0.822  Sum_probs=199.1

Q ss_pred             ccccccCcccCCCCCCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCccccchhhhhhcCCC-CCCCcccccc
Q 045695           17 NYSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSDL-SSTSPSQRFI   95 (277)
Q Consensus        17 ~~~~~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   95 (277)
                      .|+|+.+........+|||||||||.+|+++|.+|+||.+|+|||+|+.....+....+..+...+.+. .|.+.+|.+.
T Consensus        11 ~~~~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~t~~q~~~   90 (536)
T 1ju2_A           11 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV   90 (536)
T ss_dssp             GGGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEE
T ss_pred             cCccccCcccccccCcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCcCCCcceecchhHhhhccCCCcCcCCCcccc
Confidence            467776665555556899999999999999999999999999999998753333333343443322222 2455667777


Q ss_pred             CCCceeecCCceecccccccCeeEecCChhhhhcCC--CChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHHHcCCCCC
Q 045695           96 SEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG--WDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPY  173 (277)
Q Consensus        96 ~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  173 (277)
                      .++...+.+++++||+|.+|++.+.|+.+.++++.|  |+++++.++|.++++.+.+.+...++...+.+.+.++|+.+.
T Consensus        91 ~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~G~~~~  170 (536)
T 1ju2_A           91 SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPN  170 (536)
T ss_dssp             CTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCcceeecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCCCCCCcHHHHHHHHHHHcCCCCC
Confidence            777888999999999999999999999998888778  999999999999999887776677788888899999998655


Q ss_pred             CCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEee
Q 045695          174 NGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLK  253 (277)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~  253 (277)
                      ++.......++..+.+.++.+|.|++...|++.+++.|++|+++++|++|++++++  +.+++||++.+.+|+.++++++
T Consensus       171 ~~~~~~~~~g~~~g~~~~~~~g~r~s~~~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~~~GV~~~~~~g~~~~~~v~  248 (536)
T 1ju2_A          171 HGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAP--GLTATGVIYRDSNGTPHQAFVR  248 (536)
T ss_dssp             EEECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSS--SCBEEEEEEECTTSCEEEEEEE
T ss_pred             CCcccCCCCCceeeeEEECCCCeEecHHHhhhhhcCCCcEEEeCCEEEEEEECCCC--CCEEEEEEEEeCCCceEEEEec
Confidence            44323333444444455567888888766777778899999999999999998631  1289999999756666555321


Q ss_pred             cCCCcEEEEecCccccHHHHhccC
Q 045695          254 NGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       254 ~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                        +++.||||||+++||+||++||
T Consensus       249 --a~k~VILaaGa~~sp~lL~~SG  270 (536)
T 1ju2_A          249 --SKGEVIVSAGTIGTPQLLLLSG  270 (536)
T ss_dssp             --EEEEEEECCHHHHHHHHHHHTT
T ss_pred             --cCCEEEEcCcccCCHHHHHHcC
Confidence              3689999999999999999997

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=1.4e-36  Score=282.50  Aligned_cols=237  Identities=25%  Similarity=0.305  Sum_probs=179.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccccchhhhhhc----CCCCCCCccccccCCCceeecCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAAL----SDLSSTSPSQRFISEDGVINSRA  105 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  105 (277)
                      +|||||||+|.+|+++|.+|+|  +.+|+|||+|+.....+....+..+...+    .+|.|.+.||..+.++.+.+.++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~~~r~~~~~rG   81 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIAYPRG   81 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGGTTCCCBCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCCCCCceEeccCC
Confidence            6999999999999999999998  79999999998764434333333333222    26888999999999999999999


Q ss_pred             ceecccccccCeeEecCChhhhh-------cCCCChhhHhhHHHHhhhhccc-------------------------CCC
Q 045695          106 RVLGGGSCLNAGFYTRAAPYYVR-------ETGWDERLVNESYQWVEKVVAF-------------------------EPP  153 (277)
Q Consensus       106 ~~~GG~s~~~~~~~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~-------------------------~~~  153 (277)
                      ++|||+|.+|++++.|+.+.+++       +.+|.|+++.|||++.|+....                         .+.
T Consensus        82 k~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~  161 (566)
T 3fim_B           82 RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGF  161 (566)
T ss_dssp             CBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSS
T ss_pred             cEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeeecCCC
Confidence            99999999999999999985432       3689999999999998875421                         011


Q ss_pred             CchhHHHHHHHHHHc--CCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HH-hhcCCCCeEEEcCcEEEEEEEe---
Q 045695          154 MRQWQSAVRDGLVEV--GVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LL-EYANPSGLTLLLHATVHKVLFR---  226 (277)
Q Consensus       154 ~~~~~~~~~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l-~~~~~~gv~i~~~~~V~~l~~~---  226 (277)
                      ..++...+.+.+.++  |++...++......+.......+ .+|.|+++.. |+ +..+++|++|++++.|++|+++   
T Consensus       162 ~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~-~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~  240 (566)
T 3fim_B          162 PTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASV-GNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTT  240 (566)
T ss_dssp             CCTHHHHHHHHHHHTHHHHCBCSCGGGSCCCEEEECCBSE-ETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCccCCCCCCCcceEEeeeeec-CCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCC
Confidence            234567788888888  87643332211111221111111 3788988865 66 4667899999999999999998   


Q ss_pred             -cCCCCCCeEEEEEEEeCCC-ceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          227 -IKGKARPQAHGVVFRDATG-AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       227 -~~~~~~~~v~gV~~~~~~g-~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                       +++    +++||++.+.+| +.++++    ++|+||||||+|+||+|||+||
T Consensus       241 ~g~~----rA~GVe~~~~~g~~~~~v~----A~kEVILsAGai~SPqlL~lSG  285 (566)
T 3fim_B          241 NGLP----AFRCVEYAEQEGAPTTTVC----AKKEVVLSAGSVGTPILLQLSG  285 (566)
T ss_dssp             TTEE----ECCEEEEESSTTSCCEEEE----EEEEEEECCHHHHHHHHHHHTT
T ss_pred             CCCC----EEEEEEEEECCCceEEEEE----eeeEEEEecCCcCChHHHHhcC
Confidence             313    999999997545 777777    4689999999999999999998

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=9.6e-35  Score=269.45  Aligned_cols=235  Identities=28%  Similarity=0.403  Sum_probs=175.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccccchhhhhhc---CCCCCCCccccccCCCceeecC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSR  104 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  104 (277)
                      ..+|||||||||.+|+++|.+|+|  +.+|||||+|+.... +.+..+..+....   .+|.|.+.++..+.++.+.+.+
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~-~~~~~p~~~~~~~~~~~dw~~~t~p~~~~~~~~~~~~r   93 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYRTEAQAGTAGRAHHWAR   93 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCC-GGGGSGGGGGGTTTSTTBCCEECCCBGGGTTBCCEECC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCC-cchhChhhHhhccCCccccCccccccCCCCCCeEeccC
Confidence            458999999999999999999998  689999999986432 3333333333222   2577888889888889999999


Q ss_pred             CceecccccccCeeEecCChhhhh-------cCCCChhhHhhHHHHhhhhcccC----------------CCCchhHHHH
Q 045695          105 ARVLGGGSCLNAGFYTRAAPYYVR-------ETGWDERLVNESYQWVEKVVAFE----------------PPMRQWQSAV  161 (277)
Q Consensus       105 ~~~~GG~s~~~~~~~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~  161 (277)
                      +++|||+|.+|++.+.|+.+.+|+       +++|.|+++.|||++.|......                ....++...+
T Consensus        94 G~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~  173 (526)
T 3t37_A           94 GRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAF  173 (526)
T ss_dssp             BCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCSSCSEECBCCSTTSCHHHHHH
T ss_pred             ccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCccccCcCCCcCcccccccCCHHHHHH
Confidence            999999999999999999986543       25799999999999998754321                1234556778


Q ss_pred             HHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HH-h-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEE
Q 045695          162 RDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LL-E-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGV  238 (277)
Q Consensus       162 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l-~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV  238 (277)
                      .+...+.|++...+.......++... ......|.+.+... ++ + ...+.|++|++++.|.+|+++.+     +++||
T Consensus       174 ~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~-----~a~gv  247 (526)
T 3t37_A          174 IEAGASLGLPRLEGHNSGEMIGVTPN-SLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-----QVRSL  247 (526)
T ss_dssp             HHHHHHTTCCBCSSSCSSCCBSBCCC-CBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEETT-----EEEEE
T ss_pred             HHHHHHcCCCcccCCCCCcccccccc-cccccCCcccccccccccccccCCCCeEEEeCCEEEEEEecCC-----eEEEE
Confidence            88889999875433222111111111 11124567777654 44 3 55778999999999999999987     99999


Q ss_pred             EEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          239 VFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       239 ~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++.+ .++...+.     ++.||||||+++||+|||+||
T Consensus       248 ~~~~-~~~~~~~~-----a~~VILsAGai~SP~LLl~SG  280 (526)
T 3t37_A          248 EVVG-RQGSAEVF-----ADQIVLCAGALESPALLMRSG  280 (526)
T ss_dssp             EEEE-TTEEEEEE-----EEEEEECSHHHHHHHHHHHTT
T ss_pred             EEEe-cCceEEEe-----ecceEEcccccCCcchhhhcc
Confidence            9997 44555555     699999999999999999998

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=3.7e-33  Score=261.45  Aligned_cols=241  Identities=27%  Similarity=0.384  Sum_probs=176.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccc-cchhhhhhc---CCCCCCCccccccCCCceeec
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNIT-NLGSFGAAL---SDLSSTSPSQRFISEDGVINS  103 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  103 (277)
                      ..+|||||||+|.+|+++|.+|++  |.+|+|||+|......+.+. .+..+...+   .+|.|.+.+  .+.++.+.+.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~~~~~~~~~~   99 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--LINNRTNNIK   99 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--CTTSCCCEEC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--CCCCceeeee
Confidence            457999999999999999999998  89999999998764333333 222222222   145554444  4566778899


Q ss_pred             CCceecccccccCeeEecCChhhhh-------cCCCChhhHhhHHHHhhhhccc-----------C--------------
Q 045695          104 RARVLGGGSCLNAGFYTRAAPYYVR-------ETGWDERLVNESYQWVEKVVAF-----------E--------------  151 (277)
Q Consensus       104 ~~~~~GG~s~~~~~~~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~-----------~--------------  151 (277)
                      ++++|||+|.+|++.+.|+.+.+++       ..+|.|+++.|||++.|+....           .              
T Consensus       100 rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v~~  179 (587)
T 1gpe_A          100 AGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGA  179 (587)
T ss_dssp             CBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBC
T ss_pred             ccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEEEcc
Confidence            9999999999999999999985443       2579999999999999876542           0              


Q ss_pred             ----CCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-HH-hhcCCCCeEEEcCcEEEEEEE
Q 045695          152 ----PPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-LL-EYANPSGLTLLLHATVHKVLF  225 (277)
Q Consensus       152 ----~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~l-~~~~~~gv~i~~~~~V~~l~~  225 (277)
                          ....+....+.+.++++|++...++......++.......+.+|.|+++.. |+ +.+++.|++|++++.|++|++
T Consensus       180 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~  259 (587)
T 1gpe_A          180 RDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLF  259 (587)
T ss_dssp             CCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEE
T ss_pred             CCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEEEE
Confidence                022345678889999999875443322222222222222234688888865 77 466778999999999999999


Q ss_pred             ecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          226 RIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       226 ~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++++ +..+|+||++.+.+|+.+++.    +++.||||||+++||+||++||
T Consensus       260 ~~~~-~~~~~~GV~~~~~~g~~~~v~----A~k~VILaaG~~~sp~lL~~SG  306 (587)
T 1gpe_A          260 KQTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSG  306 (587)
T ss_dssp             EEET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTT
T ss_pred             CCCC-CCCEEEEEEEEeCCCcEEEEE----ecccEEEccCCCCCHHHHHhCC
Confidence            8521 012899999986467777776    3489999999999999999998

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=1.6e-33  Score=262.60  Aligned_cols=234  Identities=22%  Similarity=0.299  Sum_probs=163.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCC-CCCccccchhhhhhc---CCCCCCCccccccCCCcee--
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPY-GNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVI--  101 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--  101 (277)
                      ..+|||||||||.+||++|.+|+| + .+|||||+|+... ..+.+..+..+...+   .+|.|.+.    +.++...  
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~----~~~r~~~~~   79 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT----MVRRDDYER   79 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE----EEEETTEEE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE----ECCcccccc
Confidence            457999999999999999999999 6 7999999998632 222222333332222   13444433    2233333  


Q ss_pred             ----ecCCceecccccccCeeEecCChhhhhc------CCCChhhHhhHHHHhhhhcccC----------C---------
Q 045695          102 ----NSRARVLGGGSCLNAGFYTRAAPYYVRE------TGWDERLVNESYQWVEKVVAFE----------P---------  152 (277)
Q Consensus       102 ----~~~~~~~GG~s~~~~~~~~~~~~~~~~~------~gw~~~~~~~~~~~~~~~~~~~----------~---------  152 (277)
                          +.+|+++||+|.+|++.+.|+.+.+++.      .+|.|+++.|||++.|......          .         
T Consensus        80 ~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~~  159 (577)
T 3q9t_A           80 IEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISH  159 (577)
T ss_dssp             EEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEEE
T ss_pred             ccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEeeC
Confidence                8999999999999999999999865443      6799999999999987643211          0         


Q ss_pred             -C----CchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEec
Q 045695          153 -P----MRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRI  227 (277)
Q Consensus       153 -~----~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~  227 (277)
                       .    ..++...+.+++.++|++...++......+....... ..+|.|++...+  ..+++|++|++++.|++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~-~~~g~R~s~~~~--l~~r~Nl~v~~~a~v~ri~~~~  236 (577)
T 3q9t_A          160 AELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDT-IYRGQRSGSFLF--VKNKPNITIVPEVHSKRLIINE  236 (577)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSCCCEEEECEES-EETTEECCGGGG--SSSCTTEEEECSEEEEEEEEET
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCcCCCCCCCCcCeEEeecce-ecCCeEeeHHHH--HhcCCCeEEEcCcEEEEEEEeC
Confidence             0    1124566778888999864332211111111111111 135777766544  3567899999999999999984


Q ss_pred             CCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          228 KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       228 ~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++   .+++||++.+.+|+.+++.    ++|.||||||+|+||+|||+||
T Consensus       237 ~~---~~a~GV~~~~~~g~~~~v~----A~keVILsaGa~~sp~lL~~SG  279 (577)
T 3q9t_A          237 AD---RTCKGVTVVTAAGNELNFF----ADREVILSQGVFETPKLLMLSG  279 (577)
T ss_dssp             TT---TEEEEEEEEETTSCEEEEE----EEEEEEECSHHHHHHHHHHHTT
T ss_pred             CC---CEEEEEEEEeCCCcEEEEE----eeeEEEEcccccCChHHHHHcC
Confidence            21   2999999997557777777    4589999999999999999998

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.97  E-value=4.9e-31  Score=245.32  Aligned_cols=237  Identities=28%  Similarity=0.432  Sum_probs=172.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCCCCccccchhhhhhc---CCCCCCCccccccCCCceeecC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYGNPNITNLGSFGAAL---SDLSSTSPSQRFISEDGVINSR  104 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  104 (277)
                      ..+|||||||+|.+|+++|.+|++  |.+|+|||+|...........+..+...+   .+|.|...++.. .++.+.+.+
T Consensus        11 ~~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-~~~~~~~~r   89 (546)
T 2jbv_A           11 DREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-GNSFMRHAR   89 (546)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-SCTTCEECC
T ss_pred             cCcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-CCceEEeec
Confidence            357999999999999999999998  69999999997654211122222222221   245666666666 667788999


Q ss_pred             CceecccccccCeeEecCChhhhh-------cCCCChhhHhhHHHHhhhhccc-----------------CCCCchhHHH
Q 045695          105 ARVLGGGSCLNAGFYTRAAPYYVR-------ETGWDERLVNESYQWVEKVVAF-----------------EPPMRQWQSA  160 (277)
Q Consensus       105 ~~~~GG~s~~~~~~~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  160 (277)
                      +++|||+|.+|++.+.|+.+.+++       ..+|.|+++.|||++.|+....                 .....+....
T Consensus        90 Gk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~  169 (546)
T 2jbv_A           90 AKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVA  169 (546)
T ss_dssp             BCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHHH
T ss_pred             ccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHHHHH
Confidence            999999999999999999984332       2579999999999999876541                 1123445677


Q ss_pred             HHHHHHHcCCCCCCCccccC--CCCeeeeeEEECC-CCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeE
Q 045695          161 VRDGLVEVGVLPYNGFTYDH--LYGTKIGGTIFDQ-NGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQA  235 (277)
Q Consensus       161 ~~~~~~~~G~~~~~~~~~~~--~~~~~~~~~~~~~-~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v  235 (277)
                      +.+.++++|++.. ++....  ..++...... +. +|.|+++.. |+. ..++.|++|++++.|++|++++++    ++
T Consensus       170 ~~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~~-~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~----~~  243 (546)
T 2jbv_A          170 LLDACEQAGIPRA-KFNTGTTVVNGANFFQIN-RRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR----RC  243 (546)
T ss_dssp             HHHHHHHTTCCBC-CSSSSSCCSSEEEECEEC-BCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTS----BE
T ss_pred             HHHHHHHCCCCcc-CCCCCCcCcceEEeeeee-cCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCCC----eE
Confidence            8888999998754 322111  2222221111 23 788887755 676 445789999999999999998733    99


Q ss_pred             EEEEEEeCC-CceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          236 HGVVFRDAT-GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       236 ~gV~~~~~~-g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +||++.+.. |+.+++.    +.+.||||||+++||+||++||
T Consensus       244 ~GV~~~~~~~g~~~~i~----A~k~VIlaaG~~~sp~lL~~SG  282 (546)
T 2jbv_A          244 TGVDIVDSAFGHTHRLT----ARNEVVLSTGAIDTPKLLMLSG  282 (546)
T ss_dssp             EEEEEESSTTSCEEEEE----EEEEEEECSHHHHHHHHHHHTT
T ss_pred             EEEEEEECCCCcEEEEE----eCccEEEecCccCCchhhhhcC
Confidence            999998732 6667776    2359999999999999999997

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.97  E-value=1.2e-29  Score=234.10  Aligned_cols=241  Identities=18%  Similarity=0.212  Sum_probs=166.7

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC-CCccccchh-h-hhhcCCCCCCCccc-----------
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG-NPNITNLGS-F-GAALSDLSSTSPSQ-----------   92 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~-----------   92 (277)
                      ....+||+||||+|.+|+++|.+|++ |.+|+|||+|..... .+....... . .....+|.+.+.+|           
T Consensus         7 ~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~~   86 (507)
T 1coy_A            7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGIN   86 (507)
T ss_dssp             CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCC
T ss_pred             CcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCccccccccccccccccccccccccccccccccccc
Confidence            34568999999999999999999999 999999999975431 110000000 0 00112455555444           


Q ss_pred             ----ccc------CCCceeecCCceecccccccCeeEecCChhhhhc--CCCChhhHh-hHHHHhhhhcccCCCC-----
Q 045695           93 ----RFI------SEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE--TGWDERLVN-ESYQWVEKVVAFEPPM-----  154 (277)
Q Consensus        93 ----~~~------~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~--~gw~~~~~~-~~~~~~~~~~~~~~~~-----  154 (277)
                          .+.      .++.+.+.++++|||+|.+|++.+.|+.+.+++.  .+|.++++. |||+++|+.+...+..     
T Consensus        87 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~  166 (507)
T 1coy_A           87 KSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFE  166 (507)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHH
T ss_pred             cccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCCCcccc
Confidence                333      4556788999999999999999999999976664  478899999 9999999987654321     


Q ss_pred             ----chhHHHHHHHHHHcCCC-----CCCCcc------ccCCCCeee-eeEE-ECCCCeeeCHHH-HHh-hcCCCCeEEE
Q 045695          155 ----RQWQSAVRDGLVEVGVL-----PYNGFT------YDHLYGTKI-GGTI-FDQNGQRHTAAD-LLE-YANPSGLTLL  215 (277)
Q Consensus       155 ----~~~~~~~~~~~~~~G~~-----~~~~~~------~~~~~~~~~-~~~~-~~~~g~~~~~~~-~l~-~~~~~gv~i~  215 (277)
                          .+....+.+.++++|+.     ...++.      ......|.. +.|. -+.+| |+++.. |+. ..++.|++|+
T Consensus       167 ~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~n~~i~  245 (507)
T 1coy_A          167 STEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATGKLTIT  245 (507)
T ss_dssp             HCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTTCEEEE
T ss_pred             ccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhcCCcEEE
Confidence                23456788888999983     111110      000011110 0011 13567 877644 665 4455679999


Q ss_pred             cCcEEEEEEEecCCCCCCeEEEEEEEeCCCc---eEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          216 LHATVHKVLFRIKGKARPQAHGVVFRDATGA---KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       216 ~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~---~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +++.|++|++++++   .+++||++.+.+|.   .+++.     ++.||||||+++||+||++||
T Consensus       246 ~~~~v~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~~~-----A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          246 TLHRVTKVAPATGS---GYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             CSEEEEEEEECSSS---SEEEEEEEECTTSCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHH
T ss_pred             eCCEEEEEEECCCC---CEEEEEEEeCCCCcccccEEEE-----eCEEEEccCccCCHHHHHhcc
Confidence            99999999998742   27999999864453   45665     579999999999999999996

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.96  E-value=1.1e-29  Score=234.37  Aligned_cols=238  Identities=18%  Similarity=0.215  Sum_probs=166.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC-CCccccchhhh--hhcCCCCCCCccc--------------
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG-NPNITNLGSFG--AALSDLSSTSPSQ--------------   92 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--------------   92 (277)
                      .+||+||||+|.+|+++|++|++ |.+|+|||++..... .+.........  ....+|.+.+.++              
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~t~p~~~~~~l~~~~~~~~   83 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   83 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCcccccccccccCcccccccccccccccccccccccccc
Confidence            47999999999999999999999 999999999985431 22222211111  1112455554443              


Q ss_pred             --ccc------CCCceeecCCceecccccccCeeEecCChhhhhc--CCCChhhHh-hHHHHhhhhcccCCCC-------
Q 045695           93 --RFI------SEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE--TGWDERLVN-ESYQWVEKVVAFEPPM-------  154 (277)
Q Consensus        93 --~~~------~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~--~gw~~~~~~-~~~~~~~~~~~~~~~~-------  154 (277)
                        ++.      .++.+.+.++++|||+|.+|++.+.|+.+.+++.  .+|.++++. |||++.|+.+...+..       
T Consensus        84 ~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~~  163 (504)
T 1n4w_A           84 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT  163 (504)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             ccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccccCC
Confidence              222      4556788999999999999999999999976654  578899999 9999999977654321       


Q ss_pred             --chhHHHHHHHHHHcCCCC----C-CCcc------ccCCCCeee-eeE-EECCCCeeeCHHH-HHh-hcCCCCeEEEcC
Q 045695          155 --RQWQSAVRDGLVEVGVLP----Y-NGFT------YDHLYGTKI-GGT-IFDQNGQRHTAAD-LLE-YANPSGLTLLLH  217 (277)
Q Consensus       155 --~~~~~~~~~~~~~~G~~~----~-~~~~------~~~~~~~~~-~~~-~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~  217 (277)
                        .+....+.+.++++|+.+    . .++.      ......|.. +.| ..+.+| |+++.. |+. ..++.|++|+++
T Consensus       164 ~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~  242 (504)
T 1n4w_A          164 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKVTIQTL  242 (504)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSEEEEES
T ss_pred             CcchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCCcEEEeC
Confidence              234567788899999842    1 1110      000111110 101 113567 877644 665 444557999999


Q ss_pred             cEEEEEEEecCCCCCCeEEEEEEEeCCC---ceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          218 ATVHKVLFRIKGKARPQAHGVVFRDATG---AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       218 ~~V~~l~~~~~~~~~~~v~gV~~~~~~g---~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +.|++|++++++   .+++||++.+.+|   +..++.     ++.||||||+++||+||++||
T Consensus       243 ~~V~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~v~-----A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          243 HQVKTIRQTKDG---GYALTVEQKDTDGKLLATKEIS-----CRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             EEEEEEEECTTS---SEEEEEEEECTTCCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC---CEEEEEEEeCCCCccceeEEEe-----eCEEEEccCCCCCHHHHHhcc
Confidence            999999998632   2899999986455   455665     579999999999999999996

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.94  E-value=1e-25  Score=209.78  Aligned_cols=236  Identities=24%  Similarity=0.277  Sum_probs=150.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhh--hh---cCCCC----CCCccccccCCCc
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFG--AA---LSDLS----STSPSQRFISEDG   99 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~--~~---~~~~~----~~~~~~~~~~~~~   99 (277)
                      ..+|||||||+|++|+++|.+|++ |.+|+|||+|..............|.  ..   +.-..    ....+........
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~   84 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKD   84 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTT
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCccccccc
Confidence            457999999999999999999999 99999999997543110000000010  00   00000    0000000011123


Q ss_pred             eeecCCceecccccccCeeEecCChhhhhc-----CCCChhhHhhHHHHhhhhcccC--C------CCchhHHHHHHHHH
Q 045695          100 VINSRARVLGGGSCLNAGFYTRAAPYYVRE-----TGWDERLVNESYQWVEKVVAFE--P------PMRQWQSAVRDGLV  166 (277)
Q Consensus       100 ~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~-----~gw~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~  166 (277)
                      ..+.+++++||+|.+|++.+.|+.+.+++.     .+|.+++  ++|++.+......  +      ...+....+.+.+.
T Consensus        85 ~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~~~~a~~  162 (546)
T 1kdg_A           85 ITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLK  162 (546)
T ss_dssp             BSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHH
T ss_pred             cccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHHH
Confidence            456789999999999999999999866543     2466655  8898887744211  0      11233466778888


Q ss_pred             HcCCCCCCCcccc--CCCCeeeeeEEECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe
Q 045695          167 EVGVLPYNGFTYD--HLYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD  242 (277)
Q Consensus       167 ~~G~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~  242 (277)
                      ++|++........  ...++.... +...+|.|++... |+. ..++.|++|++++.|++|+++++     +++||++.+
T Consensus       163 ~~G~~~~~~~~~~~~~~~g~~~~~-~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~-----~~~gV~~~~  236 (546)
T 1kdg_A          163 GQGYNQATINDNPNYKDHVFGYSA-FDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTND  236 (546)
T ss_dssp             TTTCEECCGGGSTTCCTTEEEECC-BCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEEEEEESC
T ss_pred             HCCCCcCCccCCcCCCCcEEeeee-eccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEe
Confidence            8887533211000  011111110 1114677777654 665 45567999999999999999875     999999986


Q ss_pred             C-CCce--EEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          243 A-TGAK--HRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       243 ~-~g~~--~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      . +|+.  .++.    +++.||||||+++||+||++||
T Consensus       237 ~~~g~~~~~~v~----~~~~VIlaaG~~~sp~lL~~sG  270 (546)
T 1kdg_A          237 PTLGPNGFIPVT----PKGRVILSAGAFGTSRILFQSG  270 (546)
T ss_dssp             TTSSGGGEEEEE----EEEEEEECSHHHHHHHHHHHTT
T ss_pred             cCCCceeEEEEE----eCCEEEEcCChhcCHHHHHHcC
Confidence            3 3543  2343    4799999999999999999997

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.75  E-value=2.4e-17  Score=152.05  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCC-cEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPK-NEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a-~~VVlAaG~~~tp~lL  273 (277)
                      +++.+++.|++|+++++|++|+.++++    +|+||++.+ +++.+++.     + |.||||||++....-|
T Consensus       208 L~~~~~~~Gv~i~~~t~v~~L~~~~~g----~v~GV~~~~-~g~~~~i~-----A~k~VVlAtGG~~~n~~m  269 (510)
T 4at0_A          208 LVETAEKLGVRAEYDMRVQTLVTDDTG----RVVGIVAKQ-YGKEVAVR-----ARRGVVLATGSFAYNDKM  269 (510)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTC----CEEEEEEEE-TTEEEEEE-----EEEEEEECCCCCTTCHHH
T ss_pred             HHHHHHHcCCEEEecCEeEEEEECCCC----cEEEEEEEE-CCcEEEEE-----eCCeEEEeCCChhhCHHH
Confidence            555666679999999999999998544    999999987 56666676     5 5999999999854333

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.71  E-value=2.1e-16  Score=148.87  Aligned_cols=234  Identities=19%  Similarity=0.195  Sum_probs=128.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccc---cchhhh-------hh----cCC----CC----
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNIT---NLGSFG-------AA----LSD----LS----   86 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~---~~~~~~-------~~----~~~----~~----   86 (277)
                      ..+|||||||+|++|+++|+.|++ |++|+|||++..........   ....+.       ..    +..    ..    
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~~  123 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV  123 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCCC
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccccc
Confidence            357999999999999999999999 99999999987654311000   000000       00    000    00    


Q ss_pred             ------CCCccccccCC------Ccee----ecCCceecccccccCeeEecCChhhh--hcCCCC---hhhHhhHHHHhh
Q 045695           87 ------STSPSQRFISE------DGVI----NSRARVLGGGSCLNAGFYTRAAPYYV--RETGWD---ERLVNESYQWVE  145 (277)
Q Consensus        87 ------~~~~~~~~~~~------~~~~----~~~~~~~GG~s~~~~~~~~~~~~~~~--~~~gw~---~~~~~~~~~~~~  145 (277)
                            .+......+..      ..+.    ...+..+||.+..|.+...+..+...  ....|.   .+++.++|...+
T Consensus       124 ~~~~~~~~~~~~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e~~~~l~~~~v~~~~~l~~~~~~~~  203 (623)
T 3pl8_A          124 DTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAE  203 (623)
T ss_dssp             CCSCTTSCCCSSCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccCcEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHHhhhhhcccCccChhhHHHHHHHHH
Confidence                  00000000000      0111    12456678888999888877765210  001222   355666776666


Q ss_pred             hhcccCCCC--chhHH-HHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHH-HHHh-h------cCCCCeEE
Q 045695          146 KVVAFEPPM--RQWQS-AVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAA-DLLE-Y------ANPSGLTL  214 (277)
Q Consensus       146 ~~~~~~~~~--~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~-~------~~~~gv~i  214 (277)
                      ..+......  ..... .....+........ ..  .   ..+...........+++.. .++. .      .+++|++|
T Consensus       204 ~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~~-~~--~---~~p~a~~~~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~v  277 (623)
T 3pl8_A          204 SYFQTGTDQFKESIRHNLVLNKLTEEYKGQR-DF--Q---QIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNL  277 (623)
T ss_dssp             HHHTEESCTTTTCHHHHHHHHHHHHHTTTTS-CC--E---ECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEE
T ss_pred             HhcccccccccCccccccchHHHHHhhhhcc-cc--c---ccchhhccCCCCccccchHHhhhhhhhcchhhccCCCEEE
Confidence            554432211  11111 11122222111000 00  0   0001111111223344443 3554 3      44569999


Q ss_pred             EcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          215 LLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       215 ~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++++.|++|++++++   .+++||++.+ .+|+.+++.     ++.||||+|++.+|++|+.||
T Consensus       278 ~~~~~V~~i~~~~~~---~~v~GV~~~~~~~g~~~~i~-----A~~VIlaaG~~~s~~lL~~sg  333 (623)
T 3pl8_A          278 FPAVACERVVRNALN---SEIESLHIHDLISGDRFEIK-----ADVYVLTAGAVHNTQLLVNSG  333 (623)
T ss_dssp             ECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEEC-----EEEEEECSCTTHHHHHHHTTT
T ss_pred             EeCCEEEEEEEECCC---CEEEEEEEEEcCCCcEEEEE-----CCEEEEcCCCcCCHHHHHhcC
Confidence            999999999997642   3899999997 467777775     689999999999999999997

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.67  E-value=8.1e-16  Score=143.60  Aligned_cols=190  Identities=16%  Similarity=0.186  Sum_probs=104.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCcee
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVL  108 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (277)
                      ..++||||||+|++|+++|+.|++ |.+|+||||.+....                                        
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg----------------------------------------  158 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG----------------------------------------  158 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT----------------------------------------
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC----------------------------------------
Confidence            357899999999999999999999 999999999976532                                        


Q ss_pred             cccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCc------hhHHHHHHHHHHcCCCCCCCccccCCC
Q 045695          109 GGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMR------QWQSAVRDGLVEVGVLPYNGFTYDHLY  182 (277)
Q Consensus       109 GG~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~~~~~~~~~  182 (277)
                        .+....+..........+..+.. +....++....+.........      .......+++.+.|++ +....  ...
T Consensus       159 --~s~~s~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~-~~~~~--~~~  232 (566)
T 1qo8_A          159 --NSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGAN-LDDLK--RSG  232 (566)
T ss_dssp             --TGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEEE--CCT
T ss_pred             --cccccCceeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCc-ccccc--ccC
Confidence              22222222211111111111110 112222222211111110000      0122344666777765 21100  001


Q ss_pred             CeeeeeEEECCCCee--eCHHH-HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcE
Q 045695          183 GTKIGGTIFDQNGQR--HTAAD-LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNE  259 (277)
Q Consensus       183 ~~~~~~~~~~~~g~~--~~~~~-~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~  259 (277)
                      +........+.++..  ..... +...+++.|++|+++++|++|+.++++    +|+||++.+.+|+...+.     ++.
T Consensus       233 g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----A~~  303 (566)
T 1qo8_A          233 GARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----AKS  303 (566)
T ss_dssp             TCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----EEE
T ss_pred             CCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC----cEEEEEEEeCCCcEEEEE-----cCE
Confidence            111001111222211  01112 445566679999999999999998733    999999987567666665     599


Q ss_pred             EEEecCccccHHHHh
Q 045695          260 IIVSAGALGSPQLLM  274 (277)
Q Consensus       260 VVlAaG~~~tp~lLl  274 (277)
                      ||||+|++...+-|+
T Consensus       304 VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          304 VVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEECCCCCTTCHHHH
T ss_pred             EEEecCCcccCHHHH
Confidence            999999998754443

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.67  E-value=1.4e-15  Score=142.18  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +...+++.|++|+++++|++|+.++++    +|+||++.+.+|+..++.     ++.||||+|++...+-|
T Consensus       261 L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----a~~VVlAtGg~~~n~~~  322 (571)
T 1y0p_A          261 LYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADAVILATGGFAKNNER  322 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSEEEECCCCCTTCHHH
T ss_pred             HHHHHHhcCCEEEeCCEeeEeEEcCCC----eEEEEEEEeCCCcEEEEE-----CCeEEEeCCCcccCHHH
Confidence            445566679999999999999998733    999999987566666665     68899999998764433

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.59  E-value=3.1e-14  Score=133.00  Aligned_cols=59  Identities=19%  Similarity=0.321  Sum_probs=46.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      +...+++.|++|+++++|++|+.++++    +|+||++.+.+|+...+.     ++.||||+|++...
T Consensus       261 L~~~~~~~gv~i~~~t~v~~l~~~~~g----~v~GV~~~~~~G~~~~i~-----A~~VVlAtGg~~~~  319 (572)
T 1d4d_A          261 LWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVIK-----ADAVVIAAGGFAKN  319 (572)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEC--C----CEEEEEEEETTTEEEEEE-----CSEEEECCCCCTTC
T ss_pred             HHHHHHHcCCeEEecCEEEEEEECCCC----eEEEEEEEeCCCcEEEEE-----cCEEEEeCCCCccC
Confidence            445566679999999999999988723    999999987567666665     69999999998854

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.58  E-value=2.9e-14  Score=133.95  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.||||+|+++.
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  218 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLMENG-----ECRGVIALCIEDGTIHRFR-----AKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccc
Confidence            44566778999999999999998765     999999987 467766776     6899999999874

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.57  E-value=4.3e-14  Score=133.67  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.||||||+++.
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  221 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEECcEEEEEEecCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEccCcchh
Confidence            44455567999999999999998765     999999986 457666676     6899999999873

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.55  E-value=5.6e-14  Score=131.57  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|++++.|++|+.++++    +|.||.+.+ .+|+.+.+.     ++.||||+|++..
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g----~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGg~~~  207 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCeEEEEE-----cCEEEECCCCCcc
Confidence            444555679999999999999997433    999999986 456666666     5899999999764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.54  E-value=3.5e-14  Score=124.70  Aligned_cols=35  Identities=31%  Similarity=0.510  Sum_probs=32.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++||||||+|++|+++|+.|++ |++|+||||++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~   38 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG   38 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46999999999999999999999 999999999854

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.52  E-value=1.6e-13  Score=127.23  Aligned_cols=62  Identities=10%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             HHhhcCC-CCeEEEcCcEEEEEEEecCC--CCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANP-SGLTLLLHATVHKVLFRIKG--KARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~-~gv~i~~~~~V~~l~~~~~~--~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++ .|++|++++.|++|+.++++  ....+|.||.+.+ .+|+.+.+.     ++.||||+|++..
T Consensus       144 L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~~~  209 (540)
T 1chu_A          144 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCH-----AKAVVLATGGASK  209 (540)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            3444444 79999999999999984321  0001799999987 356666665     6999999999764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.49  E-value=6.9e-13  Score=124.45  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=46.3

Q ss_pred             HHhhcCCCC-eEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccH
Q 045695          203 LLEYANPSG-LTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       203 ~l~~~~~~g-v~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      +...+.+.+ ++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.||+|+|++...
T Consensus       140 L~~~~~~~gnv~i~~~~~v~~l~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          140 LFQTSLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCGGG
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCCccc
Confidence            445555566 99999999999999876     999999886 456666665     68899999998754

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.48  E-value=2.1e-13  Score=127.03  Aligned_cols=62  Identities=23%  Similarity=0.308  Sum_probs=48.7

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +...+.+.|++|+++++|++|..+++     ++.+|++.+. +|+...+.     ++.||+|+|. .+..++..
T Consensus       176 L~~~a~~~G~~i~~~~~V~~l~~~~g-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~-~s~~l~~~  238 (561)
T 3da1_A          176 IMKEAVARGAVALNYMKVESFIYDQG-----KVVGVVAKDRLTDTTHTIY-----AKKVVNAAGP-WVDTLREK  238 (561)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCGG-GHHHHHHT
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCC-----eEEEEEEEEcCCCceEEEE-----CCEEEECCCc-chHHHHHh
Confidence            44456668999999999999999876     9999999873 45556676     6999999998 46666543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.47  E-value=1.9e-13  Score=124.06  Aligned_cols=54  Identities=20%  Similarity=0.389  Sum_probs=42.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      +...+++.|++|+++++|++|..+++     ++.+|++.  +|+  ++.     ++.||+|+|++..|
T Consensus       140 L~~~~~~~GV~i~~~~~V~~i~~~~~-----~v~~V~~~--~G~--~i~-----Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          140 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGE--VLE-----TNHVVIAVGGKSVP  193 (447)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCC--EEE-----CSCEEECCCCSSSG
T ss_pred             HHHHHHHCCCEEEeCcEEEEEEecCC-----cEEEEEEC--CCC--EEE-----CCEEEECCCCCcCC
Confidence            44556668999999999999998766     78888765  453  354     68999999998755

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.46  E-value=2.5e-13  Score=119.88  Aligned_cols=36  Identities=39%  Similarity=0.616  Sum_probs=33.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~   66 (277)
                      ..+||||||+|++|+++|+.|++|.+|+|||++...
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTSCEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHhCCCCEEEEECCCCc
Confidence            468999999999999999999999999999999644

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.45  E-value=3.8e-13  Score=119.09  Aligned_cols=36  Identities=25%  Similarity=0.456  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +.++||+|||+|++|+++|+.|++ |.+|+|||++..
T Consensus         3 ~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~   39 (382)
T 1y56_B            3 PEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFI   39 (382)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            357899999999999999999999 999999999853

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.44  E-value=4.8e-12  Score=118.09  Aligned_cols=61  Identities=20%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      ++..+.+.|++|+++++|++|..+++     ++.+|++.+. +++..++.     ++.||+|||++ +..++.
T Consensus       194 l~~~a~~~Ga~i~~~t~V~~l~~~~~-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~w-s~~l~~  255 (571)
T 2rgh_A          194 NIKKAAEDGAYLVSKMKAVGFLYEGD-----QIVGVKARDLLTDEVIEIK-----AKLVINTSGPW-VDKVRN  255 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----BSCEEECCGGG-HHHHHT
T ss_pred             HHHHHHHcCCeEEeccEEEEEEEeCC-----EEEEEEEEEcCCCCEEEEE-----cCEEEECCChh-HHHHHH
Confidence            34456678999999999999999876     8999999873 35545665     69999999995 666653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.43  E-value=7.6e-14  Score=125.41  Aligned_cols=37  Identities=30%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++||||||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~   62 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP   62 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            457999999999999999999999 9999999999764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.42  E-value=1.8e-12  Score=122.65  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=45.3

Q ss_pred             HHhhcCCC-Ce-EEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPS-GL-TLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~-gv-~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++. |+ +|++++.|++|+.++++  ..+|.||.+.+ .+++.+.+.     ++.||||+|++..
T Consensus       157 l~~~~~~~~gv~~i~~~~~v~~L~~~~~~--~g~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGG~~~  219 (643)
T 1jnr_A          157 IAEAAKMAVGEENIYERVFIFELLKDNND--PNAVAGAVGFSVREPKFYVFK-----AKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHHCGGGEECSEEEEEEEECTTC--TTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBCS
T ss_pred             HHHHHHhcCCCcEEEecCEEEEEEEcCCc--cceeEEEEEEEecCCcEEEEE-----cCEEEECCCcccc
Confidence            44445555 99 99999999999987540  01899999876 456666665     6999999999874

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.41  E-value=1.6e-12  Score=115.73  Aligned_cols=36  Identities=33%  Similarity=0.540  Sum_probs=33.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   39 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF   39 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            46899999999999999999999 9999999998654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.38  E-value=7.8e-13  Score=119.36  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      ..++||||||+|++|+++|+.|++ |. +|+||||+....
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~   43 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPS   43 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence            457899999999999999999999 99 999999997653

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.38  E-value=9.5e-13  Score=124.48  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             HHhhcCCC--CeEEEcCcEEEEEEEecC--CCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPS--GLTLLLHATVHKVLFRIK--GKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~--gv~i~~~~~V~~l~~~~~--~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+++.  |++|+.++.|++|+.+++  +    +|.||.+.+ .+++.+.+.     ++.|||||||++
T Consensus       172 L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----Ak~VVLATGG~g  233 (662)
T 3gyx_A          172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPN----RIAGAVGFNLRANEVHIFK-----ANAMVVACGGAV  233 (662)
T ss_dssp             HHHHHHHHHCTTTEECSEEECCCEECSSSTT----BEEEEEEEESSSSCEEEEE-----CSEEEECCCCBC
T ss_pred             HHHHHHhcCCCcEEEEceEEEEEEEeCCccc----eEEEEEEEEcCCCcEEEEE-----eCEEEECCCccc
Confidence            34444444  999999999999999765  4    999999886 456666776     699999999987

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.38  E-value=1.9e-12  Score=123.31  Aligned_cols=36  Identities=33%  Similarity=0.386  Sum_probs=32.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+||||||+|++|+++|+.|++ |.+|+||||....
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  307 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAP  307 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            35899999999999999999999 9999999997543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.38  E-value=1.7e-11  Score=112.70  Aligned_cols=59  Identities=15%  Similarity=0.063  Sum_probs=44.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +...+.+.|++|+++++|++|..++      ++.+|++.+ .+|+..++.     ++.||+|+|++ +..++
T Consensus       155 l~~~a~~~Gv~i~~~~~V~~l~~~~------~~~~V~~~d~~~G~~~~i~-----A~~VV~AtG~~-s~~l~  214 (501)
T 2qcu_A          155 NAQMVVRKGGEVLTRTRATSARREN------GLWIVEAEDIDTGKKYSWQ-----ARGLVNATGPW-VKQFF  214 (501)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEET------TEEEEEEEETTTCCEEEEE-----ESCEEECCGGG-HHHHH
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeC------CEEEEEEEECCCCCEEEEE-----CCEEEECCChh-HHHHH
Confidence            4445666799999999999999764      567888876 356655665     68999999995 55554

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.37  E-value=4.6e-12  Score=112.82  Aligned_cols=36  Identities=39%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--C-CcEEEEcCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--N-ASVLLLERGGS   65 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g-~~VlvlE~g~~   65 (277)
                      +.++||||||+|++|+++|+.|++  | .+|+|||++..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~   57 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL   57 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            457999999999999999999998  8 99999999974

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.37  E-value=2.6e-12  Score=125.01  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .++||||||+|++|+++|+.|++ |. +|+||||+..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            46899999999999999999999 98 9999999865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.36  E-value=2.8e-12  Score=122.35  Aligned_cols=36  Identities=33%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~  299 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP  299 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence            35899999999999999999999 9999999998643

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.34  E-value=1.1e-11  Score=109.70  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=33.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +++||||||+|++|+++|+.|++ |.+|+|||++...
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~   38 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            36899999999999999999999 9999999998654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.33  E-value=8.8e-13  Score=117.95  Aligned_cols=35  Identities=40%  Similarity=0.583  Sum_probs=32.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +|||||||+|++|+++|+.|++ |.+|+||||++..
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            5899999999999999999999 9999999999754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.32  E-value=8.1e-12  Score=113.99  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++.|++++++++| +|+.+++     +|.||.+.+.++   ++.     ++.||+|+|++..
T Consensus       125 L~~~~~~~gv~i~~~~~v-~l~~~~~-----~v~Gv~v~~~~g---~~~-----a~~VVlAtGg~~~  177 (472)
T 2e5v_A          125 LLKLAREEGIPIIEDRLV-EIRVKDG-----KVTGFVTEKRGL---VED-----VDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHTTCCEECCCEE-EEEEETT-----EEEEEEETTTEE---ECC-----CSEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEECcEE-EEEEeCC-----EEEEEEEEeCCC---eEE-----eeeEEECCCCCcc
Confidence            444456679999999999 9998876     999998865223   232     6999999999653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.32  E-value=1.2e-11  Score=109.00  Aligned_cols=35  Identities=31%  Similarity=0.536  Sum_probs=32.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ++||||||+|++|+++|+.|++ |.+|+|||++...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            6899999999999999999999 9999999998654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.31  E-value=2.2e-12  Score=114.06  Aligned_cols=41  Identities=29%  Similarity=0.476  Sum_probs=34.6

Q ss_pred             cCCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        26 ~~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +..++.++||||||+|++|+++|+.|++ |.+|+|||++...
T Consensus        11 ~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~   52 (382)
T 1ryi_A           11 IRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG   52 (382)
T ss_dssp             ---CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             hhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3444568999999999999999999999 9999999998543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.28  E-value=3.4e-11  Score=106.37  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=41.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +...+.+.|++++.+++|+.+..+++     +++++.... +++..++.     ++.||.|.|.-
T Consensus       108 L~~~a~~~G~~~~~~~~v~~~~~~~~-----~~~~v~~~~-~~~~~~~~-----a~~vIgAdG~~  161 (397)
T 3oz2_A          108 LAALAAKAGADVWVKSPALGVIKENG-----KVAGAKIRH-NNEIVDVR-----AKMVIAADGFE  161 (397)
T ss_dssp             HHHHHHHHTCEEESSCCEEEEEEETT-----EEEEEEEEE-TTEEEEEE-----EEEEEECCCTT
T ss_pred             HHHHHHhcCcEEeeeeeeeeeeeccc-----eeeeeeecc-cccceEEE-----EeEEEeCCccc
Confidence            34456668999999999999999887     888888876 56666676     57777777763

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.27  E-value=8.9e-12  Score=112.77  Aligned_cols=33  Identities=33%  Similarity=0.684  Sum_probs=31.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g   63 (277)
                      .++||||||+|++|+++|+.|++ | .+|+|||+.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            47999999999999999999999 9 999999993

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.26  E-value=4.3e-11  Score=110.29  Aligned_cols=57  Identities=26%  Similarity=0.343  Sum_probs=46.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+.+.|++|+++++|++|..+++     ++.+|++.+.+|+..++.     ++.||.|+|....
T Consensus       117 L~~~a~~~Gv~i~~~~~V~~v~~~~~-----~v~gv~~~~~dG~~~~i~-----ad~VI~AdG~~S~  173 (512)
T 3e1t_A          117 LLRNSERKGVDVRERHEVIDVLFEGE-----RAVGVRYRNTEGVELMAH-----ARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEEETT-----EEEEEEEECSSSCEEEEE-----EEEEEECCCTTCS
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEECC-----EEEEEEEEeCCCCEEEEE-----cCEEEECCCcchH
Confidence            33455568999999999999999776     899999987667655665     6999999998553

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.23  E-value=1.3e-10  Score=105.47  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      +...+.+.|++|+++++|+++..+++     +++||++.+. +|+..++.     ++.||.|+|.....
T Consensus       106 L~~~a~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~G~~~~~~-----ad~VV~AdG~~s~v  164 (453)
T 3atr_A          106 VLKEAQDRGVEIWDLTTAMKPIFEDG-----YVKGAVLFNRRTNEELTVY-----SKVVVEATGYSRSF  164 (453)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSEEEECCGGGCTT
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCceEEEE-----cCEEEECcCCchhh
Confidence            34455557999999999999998776     8999999864 56555665     69999999986543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.22  E-value=2.4e-10  Score=97.34  Aligned_cols=36  Identities=33%  Similarity=0.573  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+.+|+.|++  |.+|+||||....
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            46899999999999999999998  8999999998664

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.19  E-value=7.7e-11  Score=105.54  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=33.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+|+||||...+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~   40 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP   40 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            35899999999999999999999 9999999999643

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.18  E-value=8.1e-11  Score=108.86  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++||||||+|++|+++|+.|++ |.+|+||||+...
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV  142 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcc
Confidence            346899999999999999999999 9999999999653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.17  E-value=6.1e-11  Score=106.32  Aligned_cols=57  Identities=18%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +...+++.|++|+++++|++|..+++     ++++|++   +++  ++.     ++.||+|++...+.+||-
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~gv~~---~g~--~~~-----ad~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIENG-----KAAGIIA---DDR--IHD-----ADLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEE---TTE--EEE-----CSEEEECSCHHHHHHHTT
T ss_pred             HHHHHHHcCCEEEECCceeEEEEECC-----EEEEEEE---CCE--EEE-----CCEEEECCCHHHHHHhcC
Confidence            55566778999999999999999876     8888865   243  344     699999999988887663

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.16  E-value=4.8e-10  Score=97.40  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=32.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .+|||||||+|++|+++|+.|++   |++|+|||++...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            46899999999999999999997   8999999998654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.15  E-value=2e-11  Score=111.95  Aligned_cols=58  Identities=14%  Similarity=0.189  Sum_probs=40.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +.+.+++.|++|+++++|++|+.+++     +++||++.  +|+.  +.     ++.||.++....|.+.|+
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~~~-----~~~gV~~~--~g~~--~~-----ad~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETTGN-----KIEAVHLE--DGRR--FL-----TQAVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSCE--EE-----CSCEEECCC---------
T ss_pred             HHHHHHHhCCceeeecceeEEEeeCC-----eEEEEEec--CCcE--EE-----cCEEEECCCHHHHHHHhc
Confidence            55567778999999999999999987     99999886  4654  33     689999999887776554

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.12  E-value=1.2e-09  Score=101.08  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+|+||||....
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            57999999999999999999999 9999999998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.11  E-value=7.4e-10  Score=101.74  Aligned_cols=41  Identities=32%  Similarity=0.348  Sum_probs=34.8

Q ss_pred             cCCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           26 AAQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        26 ~~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+++.++||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus         5 ~~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            5 HHHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER   46 (500)
T ss_dssp             ---CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             cCCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3455678999999999999999999999 9999999998654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.10  E-value=4.9e-10  Score=104.83  Aligned_cols=55  Identities=22%  Similarity=0.230  Sum_probs=42.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+.+.|++++.+++|+++..+++     .+.+|++.+ +|+..++.     ++.||.|+|...
T Consensus       134 L~~~a~~~Gv~i~~g~~V~~v~~~~g-----~~~~V~~~~-~G~~~~i~-----AdlVV~AdG~~S  188 (591)
T 3i3l_A          134 LLDEARSRGITVHEETPVTDVDLSDP-----DRVVLTVRR-GGESVTVE-----SDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEECCST-----TCEEEEEEE-TTEEEEEE-----ESEEEECCGGGC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCC-----CEEEEEEec-CCceEEEE-----cCEEEECCCCcc
Confidence            33455668999999999999998755     677888875 56555665     699999999844

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.09  E-value=1.2e-10  Score=104.54  Aligned_cols=36  Identities=22%  Similarity=0.424  Sum_probs=33.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .||||||+|++|+++|++|++ |.+|+||||.+...+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG   37 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            389999999999999999999 999999999877644

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.08  E-value=9e-10  Score=101.15  Aligned_cols=40  Identities=30%  Similarity=0.363  Sum_probs=33.9

Q ss_pred             CCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        27 ~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+.++||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus         7 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~   47 (499)
T 2qa2_A            7 HHHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR   47 (499)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred             cccCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            344578999999999999999999999 9999999998654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.06  E-value=9.5e-10  Score=99.83  Aligned_cols=41  Identities=34%  Similarity=0.498  Sum_probs=36.5

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .+..+|||||||+|.+|+++|+.|++ |.+|+||||++...+
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            34567999999999999999999999 999999999987654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.02  E-value=1.6e-09  Score=96.63  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=33.0

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ....+||||||+|++|+++|+.|++ |.+|+||||....
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI   58 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            3457999999999999999999999 9999999998653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.02  E-value=1.2e-09  Score=102.26  Aligned_cols=59  Identities=22%  Similarity=0.313  Sum_probs=44.4

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe----CCCce-------EEEEeecCCCcEEEEecCccccH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD----ATGAK-------HRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~----~~g~~-------~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      +.+.+++.|++|++++.|++|..++++    +|.||.+.+    .+|+.       .++.     ++.||+|.|+...-
T Consensus       150 L~~~a~~~Gv~i~~g~~v~~l~~~~~g----~V~gV~~~~~g~~~~G~~~~~~~~g~~i~-----Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          150 MGEQAEALGVEVYPGYAAAEILFHEDG----SVKGIATNDVGIQKDGAPKTTFERGLELH-----AKVTIFAEGCHGHL  219 (584)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTS----SEEEEEECCEEECTTSCEEEEEECCCEEE-----CSEEEECCCTTCHH
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCC----CEEEEEeCCccccCCCCcccccCCceEEE-----CCEEEEeeCCCchH
Confidence            344556679999999999999998754    888998863    24432       3555     69999999997653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.02  E-value=6.1e-10  Score=103.81  Aligned_cols=37  Identities=32%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||||||+|++|+++|+.|++ |++|+||||....
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP   84 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            357999999999999999999999 9999999998654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.98  E-value=6.8e-09  Score=89.62  Aligned_cols=36  Identities=28%  Similarity=0.527  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+++|+.|++   |++|+|+|+....
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            35799999999999999999996   6899999998664

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.97  E-value=2.5e-09  Score=91.63  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=31.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||+|||+|++|++||+.|++ |++|+|+|++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            457999999999999999999999 99999999973

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.96  E-value=4.1e-09  Score=93.70  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++||+|||+|++|+++|+.|++ |.+|+||||...
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            36899999999999999999999 999999999854

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.96  E-value=3e-09  Score=92.70  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      +||+|||+|++|+++|+.|++    |.+|+|+||+...
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~   39 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS   39 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence            599999999999999999976    6899999998654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.95  E-value=2.4e-09  Score=93.15  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=32.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+||+|||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~   38 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASP   38 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5899999999999999999999 9999999998654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.93  E-value=5.1e-10  Score=102.71  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||+|||+|++|+++|..|++ |.+|+|||+.+..
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~  127 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKF  127 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecccc
Confidence            457899999999999999999999 9999999998653

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.91  E-value=8.4e-09  Score=91.75  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..+||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            46899999999999999999999 999999999865

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.89  E-value=6e-09  Score=97.21  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=32.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|.+|+.||+.|++ |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            46999999999999999999999 99999999984

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.89  E-value=4.8e-09  Score=93.65  Aligned_cols=36  Identities=42%  Similarity=0.713  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++   |.+|+|||++...
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~   73 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP   73 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            35999999999999999999986   7999999998543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.87  E-value=3.5e-08  Score=91.62  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            46899999999999999999999 9999999998654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.87  E-value=5.1e-09  Score=92.91  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++||+|||+|++|+++|+.|++ |.+|+||||...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999 999999999854

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.86  E-value=1.4e-08  Score=83.67  Aligned_cols=33  Identities=33%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +|||+|||+|++|+.+|..|++ |.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            6899999999999999999999 99999999983

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.85  E-value=1.3e-09  Score=90.27  Aligned_cols=37  Identities=27%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +.+||+|||||++|+++|+.|++ |++|+|+||.+.+.
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            46899999999999999999999 99999999987653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.85  E-value=6.6e-09  Score=97.26  Aligned_cols=34  Identities=38%  Similarity=0.558  Sum_probs=32.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|++|+.+|+.|++ |.+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            47999999999999999999999 99999999984

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.85  E-value=1.2e-08  Score=87.48  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+.+||+|||+|++|+++|+.|++ |++|+|+|+.
T Consensus        13 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCccCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            457999999999999999999999 9999999997

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.85  E-value=7.4e-09  Score=92.74  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +....++.|++|++++.|.++..+++     ++.+|++.  +|+  ++.     ++.||+|+|..-.+.++..+|
T Consensus       200 l~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~v~l~--dG~--~i~-----aD~Vv~a~G~~p~~~l~~~~g  260 (415)
T 3lxd_A          200 YQAEHRAHGVDLRTGAAMDCIEGDGT-----KVTGVRMQ--DGS--VIP-----ADIVIVGIGIVPCVGALISAG  260 (415)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEESSS-----BEEEEEES--SSC--EEE-----CSEEEECSCCEESCHHHHHTT
T ss_pred             HHHHHHhCCCEEEECCEEEEEEecCC-----cEEEEEeC--CCC--EEE-----cCEEEECCCCccChHHHHhCC
Confidence            33456678999999999999987665     88888875  454  343     599999999877767766554

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.81  E-value=3.4e-08  Score=88.10  Aligned_cols=61  Identities=13%  Similarity=0.260  Sum_probs=46.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +....++.|+++++++.|.++..+++     ++.+|+..  +|+  ++.     ++.||+|+|....+.++..+|
T Consensus       190 l~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~V~~~--dG~--~i~-----aD~Vv~a~G~~p~~~l~~~~g  250 (404)
T 3fg2_P          190 FHDRHSGAGIRMHYGVRATEIAAEGD-----RVTGVVLS--DGN--TLP-----CDLVVVGVGVIPNVEIAAAAG  250 (404)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSC--EEE-----CSEEEECCCEEECCHHHHHTT
T ss_pred             HHHHHHhCCcEEEECCEEEEEEecCC-----cEEEEEeC--CCC--EEE-----cCEEEECcCCccCHHHHHhCC
Confidence            33456678999999999999988766     88888875  454  343     599999999877766766554

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.80  E-value=1.2e-08  Score=95.51  Aligned_cols=35  Identities=31%  Similarity=0.608  Sum_probs=32.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||||||+|.+|+.+|+.|++ |.+|+|||+..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            457999999999999999999999 99999999984

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.79  E-value=1.3e-08  Score=90.92  Aligned_cols=36  Identities=33%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++ |.+ |+||||....
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            46899999999999999999999 999 9999998653

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.78  E-value=2.4e-08  Score=88.22  Aligned_cols=35  Identities=31%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+||+|||+|++|+++|+.|++ |.+|+||||....
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            6899999999999999999999 9999999998654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.76  E-value=3.5e-08  Score=85.32  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+||+|||+|++|+++|+.|++ |++|+|+|+.+..
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   40 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEP   40 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            46899999999999999999999 9999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.74  E-value=5.8e-08  Score=88.00  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=33.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-----CcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-----ASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-----~~VlvlE~g~~~   66 (277)
                      ..|||||||+|++|+++|..|++ |     .+|+|||+.+..
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~   70 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDY   70 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCC
Confidence            46899999999999999999999 9     999999999754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.74  E-value=4.6e-08  Score=85.61  Aligned_cols=37  Identities=30%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||+|||+|++|+++|+.|++ |++|+|||+.+..
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   49 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQL   49 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            457999999999999999999999 9999999998553

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.73  E-value=2.7e-08  Score=93.97  Aligned_cols=36  Identities=36%  Similarity=0.565  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++  |.+|+||||.+..
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~   68 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP   68 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            47999999999999999999998  8999999998654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.73  E-value=3.2e-08  Score=89.46  Aligned_cols=37  Identities=41%  Similarity=0.527  Sum_probs=33.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~~~   67 (277)
                      ..+||+|||+|++|+++|+.|++ |.  +|+|+|+.....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~G   44 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG   44 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Confidence            46899999999999999999999 99  999999986543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.71  E-value=1.7e-08  Score=93.61  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||||||+|++|+.+|+.|++ |.+|+|||+.+..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~   56 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGV   56 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            457999999999999999999999 9999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.70  E-value=5.7e-08  Score=82.98  Aligned_cols=58  Identities=17%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      ..++.|+++++++.|.++..+++     ++.+|++...+|+..++.     ++.||+|+|....+.++
T Consensus       192 ~~~~~gv~~~~~~~v~~i~~~~~-----~~~~v~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~  249 (315)
T 3r9u_A          192 VKKNEKIELITSASVDEVYGDKM-----GVAGVKVKLKDGSIRDLN-----VPGIFTFVGLNVRNEIL  249 (315)
T ss_dssp             HHHCTTEEEECSCEEEEEEEETT-----EEEEEEEECTTSCEEEEC-----CSCEEECSCEEECCGGG
T ss_pred             HHhcCCeEEEeCcEEEEEEcCCC-----cEEEEEEEcCCCCeEEee-----cCeEEEEEcCCCCchhh
Confidence            34578999999999999988776     888999885456655664     69999999975554443

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.69  E-value=5.5e-08  Score=88.43  Aligned_cols=35  Identities=34%  Similarity=0.529  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~   38 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE   38 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            46999999999999999999999 999999998654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.69  E-value=1.7e-07  Score=79.31  Aligned_cols=33  Identities=39%  Similarity=0.664  Sum_probs=31.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+||+|||+|++|+++|+.|++ |.+|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4899999999999999999999 99999999974

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.69  E-value=3.5e-08  Score=91.36  Aligned_cols=36  Identities=19%  Similarity=0.387  Sum_probs=33.1

Q ss_pred             CCccEEEECCChhhHHHHhhhh-C-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLS-Q-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La-~-g~~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+.+|+.|+ + |.+|+|||+.+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~   44 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGP   44 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCC
Confidence            4689999999999999999999 8 9999999998654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.68  E-value=5.2e-08  Score=90.28  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++||+|||+|++|+++|+.|++ |.+|+|||+++..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~   51 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV   51 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            447999999999999999999999 9999999998664

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.68  E-value=9.7e-08  Score=82.17  Aligned_cols=35  Identities=37%  Similarity=0.371  Sum_probs=32.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+||+|||+|++|+++|+.|++ |++|+|+|+.+..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   42 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQL   42 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            5899999999999999999999 9999999998653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.67  E-value=6.1e-08  Score=83.67  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=32.5

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.+.+||+|||+|++|+++|+.|++ |++|+|+|+.+
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~   55 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM   55 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            33467999999999999999999999 99999999975

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.64  E-value=5.6e-08  Score=90.07  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||||||+|++|+.+|+.|++ |.+|+|||+++..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~   44 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDV   44 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            347899999999999999999999 9999999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.63  E-value=2.6e-07  Score=78.96  Aligned_cols=31  Identities=35%  Similarity=0.632  Sum_probs=30.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      |||+|||+|++|+++|+.|++ |. +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            799999999999999999999 99 99999996

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.62  E-value=6.2e-08  Score=84.87  Aligned_cols=33  Identities=39%  Similarity=0.603  Sum_probs=31.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ++||+|||+|++|+++|+.|++ |. +|+|||+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5899999999999999999999 99 999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.62  E-value=1.8e-08  Score=86.48  Aligned_cols=35  Identities=37%  Similarity=0.539  Sum_probs=32.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||+|||+|++|+++|++|++ |++|+|+||+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~   40 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP   40 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            58999999999999999999999 999999999743

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.60  E-value=8.5e-08  Score=87.15  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCc---EEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NAS---VLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~---VlvlE~g~~~~   67 (277)
                      +||+|||+|++|+++|..|++    |.+   |+|+|+.+...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~G   44 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWG   44 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC
Confidence            699999999999999999875    788   99999986543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.56  E-value=2.9e-08  Score=85.04  Aligned_cols=58  Identities=9%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .....+...+..+.+.++....+     ...++++.+. .+....+.     ++.|++|.|-.-...+|
T Consensus       197 ~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~i~-----~d~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          197 VLNHPKIEVIWNSELVELEGDGD-----LLNGAKIHNLVSGEYKVVP-----VAGLFYAIGHSPNSKFL  255 (314)
T ss_dssp             HHTCTTEEEECSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             hhcccceeeEeeeeeEEEEeeee-----ccceeEEeecccccceeec-----cccceEecccccChhHh
Confidence            45667899999999999987776     7888888763 34455665     69999999975444443

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.54  E-value=5.6e-08  Score=84.14  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhh--C-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLS--Q-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La--~-g~~VlvlE~g~~~~   67 (277)
                      .++||+|||+|++|++||+.|+  + |++|+|+||+....
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            3589999999999999999996  5 99999999987654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.53  E-value=7.1e-07  Score=80.25  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~   65 (277)
                      +.+||+|||+|++|+.+|..|++ |.  +|+|+|+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            46899999999999999999999 87  7999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.51  E-value=4.1e-08  Score=89.92  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=35.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~   68 (277)
                      ++.+||||||||++||+||+.|++  |.+|+|||+.+...+
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            357999999999999999999986  899999999988765

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.49  E-value=7.2e-08  Score=87.35  Aligned_cols=41  Identities=29%  Similarity=0.463  Sum_probs=36.9

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN   69 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~   69 (277)
                      +..++||||||+|++|+++|+.|++ |.+|+|||+.+...+.
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence            3467999999999999999999999 9999999999887653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.48  E-value=1.2e-06  Score=78.26  Aligned_cols=60  Identities=20%  Similarity=0.138  Sum_probs=42.9

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      +....++.|++|++++.|.++..++      ++.+|+..  +|+.  +.     ++.||+|+|....+.++..+|
T Consensus       191 l~~~l~~~GV~i~~~~~v~~i~~~~------~~~~v~~~--dg~~--i~-----aD~Vv~a~G~~p~~~l~~~~g  250 (410)
T 3ef6_A          191 LRGLLTELGVQVELGTGVVGFSGEG------QLEQVMAS--DGRS--FV-----ADSALICVGAEPADQLARQAG  250 (410)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEECSS------SCCEEEET--TSCE--EE-----CSEEEECSCEEECCHHHHHTT
T ss_pred             HHHHHHHCCCEEEeCCEEEEEeccC------cEEEEEEC--CCCE--EE-----cCEEEEeeCCeecHHHHHhCC
Confidence            3345566799999999999987533      45566664  4543  43     599999999877767776554

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.46  E-value=1.2e-06  Score=77.55  Aligned_cols=34  Identities=32%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..|+|||+|++|+++|+.|++ |++|+|+||.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            369999999999999999999 9999999998654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.44  E-value=1e-07  Score=83.49  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |..++||||||+|++|+++|+.|++ |.+|+||||....
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~   41 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCC
Confidence            3457899999999999999999999 9999999998643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.40  E-value=1.4e-07  Score=84.61  Aligned_cols=35  Identities=43%  Similarity=0.647  Sum_probs=32.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      |||||||+|++|+++|+.|++ |.+|+|||+.+...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence            799999999999999999999 99999999976543

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.39  E-value=6.9e-07  Score=82.39  Aligned_cols=36  Identities=33%  Similarity=0.502  Sum_probs=31.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-------------CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-------------NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-------------g~~VlvlE~g~~~   66 (277)
                      ..+||||||+|++|+++|..|++             |.+|+|||+...+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            46899999999999999999986             6999999997543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.36  E-value=1.9e-06  Score=81.63  Aligned_cols=36  Identities=33%  Similarity=0.593  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC------CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ------NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~------g~~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+++|..|++      |.+|+||||.+..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            36899999999999999999987      8999999998543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.35  E-value=1.6e-06  Score=78.42  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      +||+|||+|++|+++|+.|++   |.+|+|+|+.+..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            599999999999999999997   6899999999754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.31  E-value=2e-06  Score=78.09  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      ..||+|||+|++|+++|+.|++   |.+|+|+|+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            4699999999999999999987   6899999999663

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.31  E-value=3.9e-06  Score=78.37  Aligned_cols=37  Identities=24%  Similarity=0.490  Sum_probs=32.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      ....||+|||+|++|+++|+.|++   |.+|+|+|+.+..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            346799999999999999999987   5899999999653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.31  E-value=4.5e-07  Score=80.54  Aligned_cols=37  Identities=35%  Similarity=0.493  Sum_probs=33.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   61 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR   61 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence            357899999999999999999999 9999999998654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.28  E-value=4.2e-07  Score=83.65  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=34.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ..+||||||||++|+++|+.|++ |.+|+|||+.+...+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG   41 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   41 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            46799999999999999999999 999999999877643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.27  E-value=4.8e-07  Score=83.37  Aligned_cols=38  Identities=34%  Similarity=0.479  Sum_probs=34.0

Q ss_pred             CCCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           27 AQPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        27 ~~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++..+|||||||+|++|+++|+.|++ |.+|+|||+.+
T Consensus        27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           27 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            344568999999999999999999999 99999999964

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.27  E-value=5.4e-07  Score=81.77  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~~~~   68 (277)
                      .+||+|||||++|+++|+.|++ |.  +|+|||+.+...+
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG   41 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBT
T ss_pred             CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC
Confidence            3699999999999999999999 98  9999999876543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.26  E-value=7.7e-07  Score=81.63  Aligned_cols=60  Identities=15%  Similarity=0.151  Sum_probs=41.3

Q ss_pred             HHHh-hcCCCCeEEEcCcEEEEEEEecCCC--CCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCc
Q 045695          202 DLLE-YANPSGLTLLLHATVHKVLFRIKGK--ARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGA  266 (277)
Q Consensus       202 ~~l~-~~~~~gv~i~~~~~V~~l~~~~~~~--~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~  266 (277)
                      .|+. ++++.+..|+++++|+++..++.++  ......-|++.+. .++..++.     ++.||+|+|.
T Consensus       149 ~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~-----ar~vVlatG~  212 (501)
T 4b63_A          149 DYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARR-----TRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEE-----EEEEEECCCC
T ss_pred             HHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEE-----eCEEEECcCC
Confidence            3554 5666778899999999999865421  1123566777763 35566665     6899999995

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.26  E-value=3.6e-06  Score=76.71  Aligned_cols=34  Identities=41%  Similarity=0.691  Sum_probs=30.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~   65 (277)
                      .+||||||+|++|+++|+.|++   |.+|+|||+...
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            3699999999999999999987   689999999865

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.26  E-value=4.5e-07  Score=82.49  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||+|||+|++|+++|+.|++ |++|+|||++..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            47999999999999999999999 999999999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.26  E-value=5.7e-06  Score=74.26  Aligned_cols=56  Identities=13%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ...++.|+++++++.|+++.  ++        ++.+.+.++..+++.     ++.||+++|.-. +.++..|
T Consensus       208 ~~l~~~GV~~~~~~~v~~v~--~~--------~~~~~~~~g~~~~i~-----~d~vi~~~G~~~-~~~~~~~  263 (430)
T 3hyw_A          208 DLFAERNIDWIANVAVKAIE--PD--------KVIYEDLNGNTHEVP-----AKFTMFMPSFQG-PEVVASA  263 (430)
T ss_dssp             HHHHHTTCEEECSCEEEEEC--SS--------EEEEECTTSCEEEEE-----CSEEEEECEEEC-CHHHHTT
T ss_pred             HHHHhCCeEEEeCceEEEEe--CC--------ceEEEeeCCCceEee-----cceEEEeccCCC-chHHHhc
Confidence            45667899999999999874  44        456666567666775     699999998744 4555544

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.25  E-value=4.2e-07  Score=78.05  Aligned_cols=64  Identities=17%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      +.+.+.+.|++++++++|+++..+++     ++.+|++.+ .+|+...+.     ++.||+|+|...++.+|..+
T Consensus       196 l~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~~  260 (319)
T 3cty_A          196 YVQEIKKRNIPYIMNAQVTEIVGDGK-----KVTGVKYKDRTTGEEKLIE-----TDGVFIYVGLIPQTSFLKDS  260 (319)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEC-----CSEEEECCCEEECCGGGTTS
T ss_pred             HHHHHhcCCcEEEcCCeEEEEecCCc-----eEEEEEEEEcCCCceEEEe-----cCEEEEeeCCccChHHHhhc
Confidence            33434467999999999999987654     788999885 246555554     69999999876655565443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.25  E-value=3.5e-07  Score=82.61  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~~~~   68 (277)
                      +.+||+|||+|++|+++|+.|++ |      .+|+|||+.+...+
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG   48 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG   48 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence            35899999999999999999999 9      99999999876543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.24  E-value=6.7e-07  Score=79.44  Aligned_cols=40  Identities=35%  Similarity=0.576  Sum_probs=35.6

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +...+||+|||+|++|+++|+.|++ |.+|+|||+.+...+
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence            3458999999999999999999999 999999999876543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.24  E-value=7.3e-07  Score=79.68  Aligned_cols=38  Identities=32%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~   68 (277)
                      ..+||+|||+|++|+++|+.|++ | .+|+|+|+.+...+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG   44 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence            46899999999999999999999 9 99999999877654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.24  E-value=6.1e-07  Score=81.90  Aligned_cols=38  Identities=34%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .++||+|||+|++|+++|+.|++ |.+|+|||+.+...+
T Consensus        38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   76 (495)
T 2vvm_A           38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG   76 (495)
T ss_dssp             CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBT
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            34899999999999999999999 999999999876654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.24  E-value=6.7e-07  Score=81.20  Aligned_cols=39  Identities=26%  Similarity=0.449  Sum_probs=33.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||||||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG   53 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   53 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence            457899999999999999999999 999999999977654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.24  E-value=7.4e-07  Score=81.23  Aligned_cols=39  Identities=31%  Similarity=0.411  Sum_probs=35.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            457899999999999999999999 999999999987654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.23  E-value=7.2e-07  Score=78.55  Aligned_cols=37  Identities=41%  Similarity=0.663  Sum_probs=33.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ++||+|||+|++|+++|++|++ |.+|+|+|+++...+
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            4799999999999999999999 999999999876543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.23  E-value=7.5e-07  Score=79.31  Aligned_cols=40  Identities=28%  Similarity=0.471  Sum_probs=35.2

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~~~   68 (277)
                      |..++||+|||+|++|+++|+.|++  |.+|+|+|+.+...+
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            3447899999999999999999998  799999999976654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.23  E-value=8.7e-06  Score=72.05  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .....|+|||+|++|+.+|..|.+ +.+|+|+|+.+..
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            456789999999999999999977 9999999999664

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.22  E-value=5e-07  Score=83.11  Aligned_cols=38  Identities=39%  Similarity=0.464  Sum_probs=34.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~   68 (277)
                      ..+||||||||++|++||+.|++ | .+|+|||+.+...+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            36899999999999999999999 9 99999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.22  E-value=6.3e-07  Score=81.92  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            357999999999999999999999 9999999997554

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.20  E-value=7e-07  Score=81.49  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|++|+++|+.|++ |.+|+|||++.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   59 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR   59 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            46999999999999999999999 99999999953

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.19  E-value=9e-07  Score=80.28  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+|||+|||+|++|+++|+.|++ |++|+|||++
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46999999999999999999999 9999999994

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.19  E-value=8.6e-06  Score=72.45  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhC----CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~   65 (277)
                      ||+|||+|++|+++|+.|++    |.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999986    689999999864

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.19  E-value=1.1e-06  Score=80.27  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      +...+||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   50 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   50 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            3456899999999999999999999 999999999987654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.18  E-value=5.7e-07  Score=80.86  Aligned_cols=34  Identities=29%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.+||+|||+|++|+++|+.|++ |.+|+||||..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            46899999999999999999999 99999999986

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.18  E-value=1.2e-06  Score=78.82  Aligned_cols=41  Identities=29%  Similarity=0.445  Sum_probs=36.5

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN   69 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~   69 (277)
                      |..++||||||+|++|+++|..|++ |.+|+|+|+.....+.
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~   44 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE   44 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccc
Confidence            3457899999999999999999999 9999999999876643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.17  E-value=1e-06  Score=80.30  Aligned_cols=34  Identities=38%  Similarity=0.463  Sum_probs=31.6

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+|||||||+|++|+++|+.|++ |.+|+||||+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            457999999999999999999999 9999999964

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.17  E-value=6.4e-07  Score=78.02  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C------CcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N------ASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g------~~VlvlE~g~~   65 (277)
                      .||||||+|++|+++|+.|++ |      .+|+|||+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            399999999999999999999 9      89999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.17  E-value=1.2e-06  Score=77.18  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC-CCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG-GSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g-~~~~   67 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+|+. ....
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            457899999999999999999999 9999999998 6543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.16  E-value=1e-06  Score=79.43  Aligned_cols=38  Identities=29%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .++||||||+|++|+++|+.|++ |.+|+|+|+.....+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            36899999999999999999999 999999999876654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.15  E-value=1.3e-06  Score=80.80  Aligned_cols=34  Identities=38%  Similarity=0.652  Sum_probs=31.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +||+||||+|++|.++|.++++ |.||+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            6999999999999999999999 999999998653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.15  E-value=9.1e-07  Score=76.13  Aligned_cols=34  Identities=44%  Similarity=0.702  Sum_probs=32.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+|||+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            346899999999999999999999 9999999998

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.14  E-value=1.1e-05  Score=74.89  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .||+|||+|++|+++|+.|++   +.+|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            389999999999999999997   5899999999654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.13  E-value=1.3e-06  Score=79.97  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=31.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +|||+|||+|++|+++|+.|++ |.+|+|||++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            5999999999999999999999 99999999975

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.11  E-value=1.2e-06  Score=80.03  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+|||||||+|++|+++|+.|++ |.+|+||||..
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            457999999999999999999999 99999999843

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.11  E-value=1.5e-06  Score=78.51  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||+|||+|++|+++|+.|++ |++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            46899999999999999999999 99999999984

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.10  E-value=1.5e-06  Score=78.89  Aligned_cols=34  Identities=32%  Similarity=0.567  Sum_probs=32.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||+|||+|++|+++|++|++ |++|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            46999999999999999999999 99999999984

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.09  E-value=1.7e-06  Score=67.94  Aligned_cols=32  Identities=38%  Similarity=0.715  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ||++|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999 99999999986

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.09  E-value=1.8e-06  Score=78.38  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~   67 (277)
                      .+||+|||+|++|+++|+.|++ |  .+|+|||+.+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~G   42 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLG   42 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSB
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            5799999999999999999999 9  9999999976654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.07  E-value=1.2e-06  Score=79.65  Aligned_cols=34  Identities=32%  Similarity=0.625  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||+|||+|++|+++|+.|++ |.+|+|||++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            47999999999999999999999 99999999874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.06  E-value=1.5e-06  Score=74.46  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=44.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-C-CceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-T-GAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~-g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +...+++.|++++++++|.++..+++     ++.+|++.+. + |+..++.     ++.||+|+|.-..+.+|
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~g~~~~i~-----~D~vv~a~G~~p~~~~~  252 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAIF  252 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEECSS-----SEEEEEEECCTTCCCCEEEE-----CSEEEECSCEEESCGGG
T ss_pred             HHHhcccCCeEEEcCceeEEEEcCCC-----ceEEEEEEeccCCCceEEEE-----cCEEEEEeCCCCChHHh
Confidence            34455668999999999999987765     7888999862 2 4445565     59999999975544443

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.06  E-value=1.9e-06  Score=78.93  Aligned_cols=33  Identities=42%  Similarity=0.728  Sum_probs=31.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +|||||||+|++|+++|+.|++ |++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999 99999999985

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.06  E-value=1.4e-06  Score=79.37  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +.+|||||||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            346999999999999999999999 9999999996543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.06  E-value=2e-06  Score=78.01  Aligned_cols=35  Identities=31%  Similarity=0.387  Sum_probs=32.4

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++||+|||+|++|+++|+.|++ |.+|+|||++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            347899999999999999999999 99999999983

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.05  E-value=2.6e-06  Score=78.45  Aligned_cols=37  Identities=35%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +..++||||||+|++|+++|+.|++ |.+|+|||++..
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   77 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   77 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3457999999999999999999999 999999999974

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.05  E-value=2.1e-06  Score=77.88  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=32.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +|||+|||+|++|+++|+.|++ |.+|+|+|+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            5899999999999999999999 9999999998643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=1.8e-06  Score=78.61  Aligned_cols=34  Identities=38%  Similarity=0.701  Sum_probs=32.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||||||+|++|+++|+.|++ |.+|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            47999999999999999999999 99999999974

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.04  E-value=2.8e-06  Score=77.58  Aligned_cols=39  Identities=31%  Similarity=0.416  Sum_probs=35.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||+|||+|++|+++|+.|++ |.+|+|||+.+...+
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            346899999999999999999999 999999999876554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.04  E-value=2.9e-06  Score=72.28  Aligned_cols=56  Identities=23%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +..|+++++++.|+++..+++     ++.+|++.+ .+|+..++.     .+.||+|+|....+.+|
T Consensus       191 ~~~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l  247 (310)
T 1fl2_A          191 SLKNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIGLLPNTNWL  247 (310)
T ss_dssp             TCTTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             hCCCeEEecCCceEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeeCCccCchHH
Confidence            336999999999999986654     888999987 346555665     59999999865544444

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.02  E-value=1.6e-06  Score=78.92  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   39 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            36899999999999999999999 999999999654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.01  E-value=3.6e-06  Score=76.35  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=33.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+|||+|||+|++|+++|+.|++ |++|+|+|+.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            46899999999999999999999 9999999998654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.00  E-value=2.8e-06  Score=76.80  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +|||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999 999999999854

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.00  E-value=4.1e-06  Score=74.15  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ++||+|||+|++|+++|+.|++ |.+|+|+|+.+...+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   40 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence            4799999999999999999999 999999999876543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.00  E-value=2.5e-06  Score=77.57  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+|||+|||+|++|+++|..|++ |.+|+|||+.+..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            346899999999999999999999 9999999998643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.99  E-value=2.6e-06  Score=73.65  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=32.2

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +...+||+|||+|++|+++|+.|++ |++|+|+|+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3457999999999999999999999 9999999975

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.97  E-value=4.2e-06  Score=76.39  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~   68 (277)
                      ..+||+|||+|++|+++|+.|++ | .+|+|+|+.+...+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSG
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999 8 89999999976643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.96  E-value=3e-06  Score=76.63  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +|||||||+|++|+++|..|++ |.+|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5899999999999999999999 9999999998

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.96  E-value=3.8e-06  Score=76.03  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=31.5

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|||+|||+|++|+++|..|++ |.+|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence            46899999999999999999999 99999999943

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.95  E-value=5.5e-06  Score=78.92  Aligned_cols=38  Identities=26%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|++....
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~G  427 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLG  427 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            356899999999999999999999 99999999987543

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.94  E-value=4.7e-06  Score=73.35  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +||||||+|.+|+.+|+.|++ |.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            599999999999999999999 999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.93  E-value=4.5e-06  Score=75.66  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      +|||+|||+|++|+++|+.|++ |.+|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            5899999999999999999999 9999999998

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.93  E-value=5.4e-05  Score=64.71  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-.|..|++ |.+|.++++.+.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            479999999999999999999 999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.92  E-value=3.8e-06  Score=72.30  Aligned_cols=60  Identities=10%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          206 YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       206 ~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      ..++.|+++++++.|.++..++++   .++.+|++.+. +|+..++.     ++.||+|+|.-.++.+|
T Consensus       204 ~~~~~gv~i~~~~~v~~i~~~~~~---~~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          204 ALSNPKIDVIWNSSVVEAYGDGER---DVLGGLKVKNVVTGDVSDLK-----VSGLFFAIGHEPATKFL  264 (333)
T ss_dssp             HHTCTTEEEECSEEEEEEEESSSS---SSEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             HHhCCCeeEecCCceEEEeCCCCc---cceeeEEEEecCCCceEEEe-----cCEEEEEeCCccchHHh
Confidence            456789999999999999875531   15777888763 45555665     69999999976554443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.92  E-value=8.6e-05  Score=65.42  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ  179 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            479999999999999999999 999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.91  E-value=8.1e-06  Score=73.91  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=33.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...+||+|||||++|+++|+.|++ |++|+|+|+.+..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            356899999999999999999999 9999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.89  E-value=6.5e-05  Score=69.12  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH-HHhc
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ-LLML  275 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~-lLl~  275 (277)
                      .++.|++|+++++|+++..++++    ++.++.+...+|+ .++.     ++.||+|+|...++. +|..
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~----~v~~~~v~~~~G~-~~i~-----aD~Vv~A~G~~p~~~~~l~~  324 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANG----RVQAVVAMTPNGE-MRIE-----TDFVFLGLGEQPRSAELAKI  324 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTS----BEEEEEEEETTEE-EEEE-----CSCEEECCCCEECCHHHHHH
T ss_pred             HHhCCcEEEECCEEEEEEEcCCC----ceEEEEEEECCCc-EEEE-----cCEEEECcCCccCCccCHHH
Confidence            34469999999999999876553    6766666554553 2454     699999999866655 4543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.89  E-value=0.00013  Score=63.49  Aligned_cols=57  Identities=14%  Similarity=0.136  Sum_probs=42.5

Q ss_pred             CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          209 PSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       209 ~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +.|++++++++|.++..+++     ++.+|++...+|+...+.     .+.||+|+|.-..+.+|..
T Consensus       214 ~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~  270 (360)
T 3ab1_A          214 NGTIDVYLETEVASIEESNG-----VLTRVHLRSSDGSKWTVE-----ADRLLILIGFKSNLGPLAR  270 (360)
T ss_dssp             HTSEEEESSEEEEEEEEETT-----EEEEEEEEETTCCEEEEE-----CSEEEECCCBCCSCGGGGG
T ss_pred             cCceEEEcCcCHHHhccCCC-----ceEEEEEEecCCCeEEEe-----CCEEEECCCCCCCHHHHHh
Confidence            35899999999999998765     888888874456555565     5999999996544445544

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.88  E-value=0.00015  Score=61.73  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  179 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            479999999999999999999 999999998854

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.88  E-value=5.6e-06  Score=75.09  Aligned_cols=33  Identities=39%  Similarity=0.589  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +|||||||+|++|+++|..|++ |.+|+|+|+..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6899999999999999999999 99999999986

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.88  E-value=8e-06  Score=78.57  Aligned_cols=38  Identities=34%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ..+||+|||+|++|+++|+.|++ |.+|+|||+.....+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            46899999999999999999999 999999999876543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.87  E-value=7.3e-06  Score=74.36  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~   68 (277)
                      ..+||+|||+|++|+++|+.|++ |. +|+|+|+++...+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            46899999999999999999999 98 8999999876554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.87  E-value=8e-06  Score=75.44  Aligned_cols=36  Identities=36%  Similarity=0.601  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      ..+||||||+|++|+++|+.|++    |.+|+|||+....
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            36899999999999999999986    6899999997644

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.85  E-value=1.1e-05  Score=71.13  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=30.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      ..+||||||+|++|+++|..|++ |  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            36899999999999999999999 8  5799999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.84  E-value=8.2e-06  Score=76.34  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=31.7

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...|||+|||+|++|+++|..|++ |++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            457999999999999999999999 9999999984

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.83  E-value=0.00015  Score=61.52  Aligned_cols=33  Identities=33%  Similarity=0.425  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ +.+|.++++.+.
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            379999999999999999999 999999998854

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.83  E-value=9.5e-06  Score=71.50  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      .||||||+|++|+++|+.|++   |.+|+|+||.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            389999999999999999986   7999999998664

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.80  E-value=6.7e-06  Score=75.37  Aligned_cols=34  Identities=38%  Similarity=0.554  Sum_probs=29.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~   65 (277)
                      .+||||||+|++|+++|+.|++    |.+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            4799999999999999999987    689999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.79  E-value=1.2e-05  Score=73.99  Aligned_cols=60  Identities=22%  Similarity=0.310  Sum_probs=44.6

Q ss_pred             HhhcCC-CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          204 LEYANP-SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       204 l~~~~~-~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .....+ .|+++++++.|+++..+++     ++++|++.+ .+|+...+.     .+.||+|+|...++.+|
T Consensus       397 ~~~l~~~~gV~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          397 QDKVRSLKNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHSVA-----LAGIFVQIGLLPNTHWL  458 (521)
T ss_dssp             HHHHTTCTTEEEECSEEEEEEEECSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEEESCGGG
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEcCCC-----cEEEEEEEeCCCCceEEEE-----cCEEEECcCCCCCchHH
Confidence            333444 6999999999999987655     889999987 346656665     58999999975444444

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.79  E-value=0.00039  Score=58.96  Aligned_cols=57  Identities=12%  Similarity=0.086  Sum_probs=42.6

Q ss_pred             CCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          209 PSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       209 ~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      +.|+++++++.|.++..+++     ++.+|++.+ .+|+...+.     ++.||+|+|-...+.+|..
T Consensus       191 ~~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~  248 (311)
T 2q0l_A          191 NDKIEFLTPYVVEEIKGDAS-----GVSSLSIKNTATNEKRELV-----VPGFFIFVGYDVNNAVLKQ  248 (311)
T ss_dssp             CTTEEEETTEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECSCEEECCGGGBC
T ss_pred             CCCeEEEeCCEEEEEECCCC-----cEeEEEEEecCCCceEEEe-----cCEEEEEecCccChhhhhc
Confidence            36999999999999987755     788888875 246555565     5899999997655555543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.78  E-value=0.00049  Score=58.35  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=44.4

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ++.|+++++++.|.++..+ +     ++.+|++.+ .+|+...+.     ++.||+|+|--.+..+|..+
T Consensus       201 ~~~gv~~~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~~~~  259 (323)
T 3f8d_A          201 KKPNVEFVLNSVVKEIKGD-K-----VVKQVVVENLKTGEIKELN-----VNGVFIEIGFDPPTDFAKSN  259 (323)
T ss_dssp             TCTTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEECCHHHHHHT
T ss_pred             hCCCcEEEeCCEEEEEecc-C-----ceeEEEEEECCCCceEEEE-----cCEEEEEECCCCChhHHhhc
Confidence            3469999999999999865 3     778888886 346655665     59999999987666776554

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.76  E-value=1.4e-05  Score=74.81  Aligned_cols=43  Identities=30%  Similarity=0.301  Sum_probs=38.4

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      ++++|||||||+|..|+..|..|++ |.+||+|||.+...++..
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            3558999999999999999999999 999999999988876544

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.75  E-value=2.2e-05  Score=74.53  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ..+||+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~g  409 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG  409 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            46899999999999999999999 99999999986543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.75  E-value=1.4e-05  Score=73.02  Aligned_cols=36  Identities=11%  Similarity=0.251  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C---CcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g---~~VlvlE~g~~~   66 (277)
                      +++||||||+|++|+++|..|++ |   .+|+|||+....
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            46899999999999999999999 8   999999998753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.75  E-value=1.2e-05  Score=73.48  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC--CCcEEEEcC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ--NASVLLLER   62 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~   62 (277)
                      |..+|||+|||+|++|+++|+.|++  |++|+|||+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            3447999999999999999999998  999999994

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.74  E-value=2e-05  Score=69.21  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.||+|||+|++|+++|..|++ | +|+|+|+....
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            3599999999999999999999 9 99999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.73  E-value=2.2e-05  Score=75.20  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=34.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ...+||+|||+|++|+.+|+.|++ |++|+|+|+.+...
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~G  425 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG  425 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC
Confidence            346899999999999999999999 99999999987643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.72  E-value=0.00027  Score=63.70  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            479999999999999999999 999999999865

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.72  E-value=2e-05  Score=73.03  Aligned_cols=36  Identities=36%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      ..+||||||+|++|+++|+.|++    |.+|+|||+...+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   63 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIP   63 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCC
Confidence            46899999999999999999987    5899999997543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.71  E-value=1.9e-05  Score=72.11  Aligned_cols=31  Identities=23%  Similarity=0.502  Sum_probs=29.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEc
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLE   61 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE   61 (277)
                      .+|||+|||+|++|+++|+.|++  |++|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            36899999999999999999998  99999999

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.71  E-value=0.00043  Score=59.35  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=41.6

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ++.|+++++++.|.++..+ +     ++.+|++.+. +|+..++.     .+.||+|+|--..+.+|..+
T Consensus       202 ~~~gv~v~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~~  260 (335)
T 2zbw_A          202 EEGRLEVLTPYELRRVEGD-E-----RVRWAVVFHNQTQEELALE-----VDAVLILAGYITKLGPLANW  260 (335)
T ss_dssp             HTTSSEEETTEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEEEECGGGGGS
T ss_pred             ccCCeEEecCCcceeEccC-C-----CeeEEEEEECCCCceEEEe-----cCEEEEeecCCCCchHhhhc
Confidence            4468999999999999863 3     6778888753 45545555     59999999976554455443

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.71  E-value=1.4e-05  Score=73.13  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC----CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ----NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~   64 (277)
                      +|||||||+|++|+++|+.|++    |.+|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            5899999999999999999986    67999999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.71  E-value=2.2e-05  Score=74.43  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|+.+...+
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            346899999999999999999999 999999999876543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.70  E-value=0.00013  Score=66.12  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=30.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  203 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE  203 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            479999999999999999999 999999999865

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.69  E-value=0.00028  Score=60.37  Aligned_cols=54  Identities=6%  Similarity=0.092  Sum_probs=41.7

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .|+++++++.|.++..+++     ++.+|++.+. +++...+.     ++.||+|+|....+.++
T Consensus       222 ~gv~i~~~~~v~~i~~~~~-----~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~~  276 (338)
T 3itj_A          222 EKIEILYNTVALEAKGDGK-----LLNALRIKNTKKNEETDLP-----VSGLFYAIGHTPATKIV  276 (338)
T ss_dssp             TTEEEECSEEEEEEEESSS-----SEEEEEEEETTTTEEEEEE-----CSEEEECSCEEECCGGG
T ss_pred             CCeEEeecceeEEEEcccC-----cEEEEEEEECCCCceEEEE-----eCEEEEEeCCCCChhHh
Confidence            5999999999999998765     7899999873 35445565     69999999975554443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.68  E-value=0.00017  Score=65.48  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcc
Confidence            479999999999999999999 9999999998653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.68  E-value=2.6e-05  Score=69.44  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~~   66 (277)
                      .++||+|||+|++|+++|..|++ |.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            46899999999999999999999 87  59999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.63  E-value=2.8e-05  Score=76.72  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=33.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .+||+|||+|++|+++|..|++ |++|+|||+.+...
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            5899999999999999999999 99999999986543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.62  E-value=3.8e-05  Score=74.49  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+||+|||+|++|+++|+.|++ |++|+|+|+.....+
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            346899999999999999999999 999999999876653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.62  E-value=0.00039  Score=63.86  Aligned_cols=33  Identities=33%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            379999999999999999999 999999998854

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.60  E-value=0.00092  Score=57.08  Aligned_cols=55  Identities=13%  Similarity=0.273  Sum_probs=40.4

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      ++.|++|+++++|+++..+ +     ++.+|++.+ .+|+..++.     ++.||+|+|--..+.+|
T Consensus       199 ~~~gv~i~~~~~v~~i~~~-~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l  254 (325)
T 2q7v_A          199 ANPKMKFIWDTAVEEIQGA-D-----SVSGVKLRNLKTGEVSELA-----TDGVFIFIGHVPNTAFV  254 (325)
T ss_dssp             TCTTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             hcCCceEecCCceEEEccC-C-----cEEEEEEEECCCCcEEEEE-----cCEEEEccCCCCChHHH
Confidence            3469999999999999863 3     778899885 356555665     59999999865444443

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.59  E-value=0.00035  Score=63.69  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            479999999999999999999 9999999998653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.58  E-value=3.3e-05  Score=69.71  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      +||||||+|++|+++|..|++   |.+|+|||+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            599999999999999999987   7999999998753

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.58  E-value=0.00024  Score=63.98  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=31.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE  204 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            3589999999999999999999 999999999854

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.57  E-value=4.7e-05  Score=68.57  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~   67 (277)
                      .+||+|||+|++|+++|+.|++   +.+|+|+|+.+...
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~   41 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS   41 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccc
Confidence            4799999999999999999987   57999999997543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.56  E-value=0.00031  Score=63.57  Aligned_cols=33  Identities=27%  Similarity=0.474  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  208 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR  208 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence            479999999999999999999 999999999865

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.55  E-value=4.5e-05  Score=69.66  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=32.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      ...+||||||+|++|+++|..|.+   |.+|+|||+.+..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            457899999999999999988865   6899999998653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.54  E-value=0.00027  Score=63.58  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+++|||+|++|+-+|..|++ |.+|+|+|+++.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc
Confidence            34689999999999999999999 999999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.52  E-value=0.00045  Score=62.90  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            479999999999999999999 9999999998653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.52  E-value=5.9e-05  Score=68.29  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~   67 (277)
                      ..+||+|||+|++|+.+|..|++ |  .+|+|+|+.+...
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            35799999999999999999999 8  9999999987653

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00016  Score=65.67  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV  220 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence            479999999999999999999 9999999998653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.48  E-value=0.00056  Score=61.85  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR  200 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            379999999999999999999 999999999854

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.48  E-value=0.0018  Score=55.35  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  193 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA  193 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence            479999999999999999999 999999999854

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.47  E-value=5.6e-05  Score=68.04  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~   66 (277)
                      +||||||+|++|+++|..|++   |.+|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            489999999999999999987   6899999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.46  E-value=6.4e-05  Score=74.63  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ..+||+|||||++|+++|+.|++ |+ +|+|+|+.+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence            46899999999999999999999 98 79999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.46  E-value=0.00053  Score=62.27  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL  220 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            479999999999999999999 9999999998653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.45  E-value=0.00045  Score=62.56  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  212 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH  212 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc
Confidence            479999999999999999999 999999999865

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.45  E-value=6.8e-05  Score=68.47  Aligned_cols=36  Identities=42%  Similarity=0.459  Sum_probs=32.3

Q ss_pred             CccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~   67 (277)
                      .+||+|||+|++|+++|+.|++..+|+|||+++...
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~~G  143 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGWLG  143 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCCCC
Confidence            579999999999999999998768999999987653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.44  E-value=0.00029  Score=64.01  Aligned_cols=34  Identities=35%  Similarity=0.562  Sum_probs=31.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-+++|||+|..|+-+|..|++ |.+|+|+|+++.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            3579999999999999999999 999999999854

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.43  E-value=0.00032  Score=64.06  Aligned_cols=34  Identities=15%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            479999999999999999999 9999999998653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.43  E-value=0.00032  Score=63.21  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            479999999999999999999 999999999854

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.42  E-value=0.00051  Score=61.81  Aligned_cols=33  Identities=33%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            379999999999999999999 999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.41  E-value=0.00027  Score=63.95  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  211 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE  211 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            479999999999999999999 999999999865

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.41  E-value=0.00026  Score=63.98  Aligned_cols=34  Identities=24%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            479999999999999999999 9999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.38  E-value=0.0007  Score=62.64  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||+|..|+-+|..|++ |.+|.++|+.+.
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            79999999999999999999 999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.36  E-value=0.00041  Score=62.70  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            479999999999999999999 999999999865

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.34  E-value=0.00011  Score=66.46  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=32.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC--------CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ--------NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~--------g~~VlvlE~g~~~~   67 (277)
                      .+||+|||+|++|+.+|..|++        |.+|+|+|+.+...
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            5799999999999999999987        79999999986543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.34  E-value=0.00074  Score=61.67  Aligned_cols=34  Identities=18%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            479999999999999999999 9999999998653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.34  E-value=0.0011  Score=60.07  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++  |.+|.++|+.+.
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~  194 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ  194 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc
Confidence            479999999999999999987  899999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.34  E-value=0.00099  Score=60.29  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  214 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK  214 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            479999999999999999999 999999999865

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.33  E-value=0.00013  Score=65.57  Aligned_cols=34  Identities=26%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      .||+|||+|++|+++|+.|++    |.+|+|||+.+..
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            599999999999999999986    6899999999753

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.27  E-value=9.5e-05  Score=70.15  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-C--------CcEEEEcCCC-CC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-N--------ASVLLLERGG-SP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g--------~~VlvlE~g~-~~   66 (277)
                      ..+|+|||+|++|+++|+.|++ |        .+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            4799999999999999999999 8        9999999987 54

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.25  E-value=0.0013  Score=55.99  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=40.5

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      .|+++++++.|.++..++      .+.+|.+.+ .+++...+.     ++.||+|+|--..+.+|..+
T Consensus       202 ~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~~~~  258 (332)
T 3lzw_A          202 SKVNVLTPFVPAELIGED------KIEQLVLEEVKGDRKEILE-----IDDLIVNYGFVSSLGPIKNW  258 (332)
T ss_dssp             SSCEEETTEEEEEEECSS------SCCEEEEEETTSCCEEEEE-----CSEEEECCCEECCCGGGGGS
T ss_pred             CCeEEEeCceeeEEecCC------ceEEEEEEecCCCceEEEE-----CCEEEEeeccCCCchHHhhc
Confidence            589999999999997544      345677776 345555665     59999999976655666544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.25  E-value=0.00083  Score=62.56  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  221 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ  221 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            369999999999999999999 999999999864

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.25  E-value=0.0014  Score=59.35  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            479999999999999999999 9999999998653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.24  E-value=0.0035  Score=56.33  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=38.3

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ..+.+++|+++++|+++..+++     . ..|.+.+. +|+..++.     ++.||+|+|.-..
T Consensus       326 ~~~~~v~i~~~~~v~~v~~~~~-----~-~~v~~~~~~~g~~~~~~-----~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          326 SGIPRHAFRCMTTVERATATAQ-----G-IELALRDAGSGELSVET-----YDAVILATGYERQ  378 (463)
T ss_dssp             HCCCCSEEETTEEEEEEEEETT-----E-EEEEEEETTTCCEEEEE-----ESEEEECCCEECC
T ss_pred             cCCCCeEEEeCCEEEEEEecCC-----E-EEEEEEEcCCCCeEEEE-----CCEEEEeeCCCCC
Confidence            4457999999999999987665     3 34666653 46665665     5999999997654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.23  E-value=0.0022  Score=56.88  Aligned_cols=34  Identities=35%  Similarity=0.461  Sum_probs=31.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            479999999999999999999 9999999998653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.21  E-value=0.0002  Score=64.32  Aligned_cols=33  Identities=12%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~   66 (277)
                      .|||||+|++|+++|.+|++ |  .+|+|+|+.+..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            48999999999999999998 7  579999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.21  E-value=0.00059  Score=59.74  Aligned_cols=33  Identities=42%  Similarity=0.617  Sum_probs=30.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe
Confidence            379999999999999999999 999999999865

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.19  E-value=0.00081  Score=61.09  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  225 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL  225 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc
Confidence            3479999999999999999999 999999999865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.17  E-value=0.00097  Score=60.69  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            479999999999999999999 9999999998653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.15  E-value=0.00032  Score=64.21  Aligned_cols=35  Identities=11%  Similarity=0.221  Sum_probs=31.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+..|||||+|.+|+.+|.+|++ +.+|+|||+.+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            35689999999999999999999 999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.14  E-value=0.0035  Score=56.84  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=28.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            369999999999999999999 9999999985

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.14  E-value=0.00025  Score=62.68  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      .|||||+|++|+++|.+|++ +  .+|+|||+.+.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            49999999999999999987 5  69999999865

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.12  E-value=0.0041  Score=56.46  Aligned_cols=31  Identities=13%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++|||+|..|+-+|..|++ |.+|.++++..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            69999999999999999999 99999999863

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.12  E-value=0.0019  Score=58.12  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL  182 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence            479999999999999999999 9999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.05  E-value=0.0023  Score=57.70  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=30.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  210 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTL  210 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            479999999999999999999 999999999854

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.05  E-value=0.0014  Score=59.07  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            3479999999999999999999 999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.03  E-value=0.01  Score=50.05  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            479999999999999999999 999999998754

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.00  E-value=0.004  Score=57.42  Aligned_cols=32  Identities=13%  Similarity=0.116  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.++|||+|..|+=.|..+++ |.+|+|+++..
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~  256 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSI  256 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEecccc
Confidence            369999999999999999999 99999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.97  E-value=0.0026  Score=57.44  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA  207 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcC
Confidence            479999999999999999999 9999999998653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.94  E-value=0.0028  Score=54.30  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            479999999999999999999 999999998743

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.86  E-value=0.0032  Score=54.53  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            379999999999999999999 999999999854

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.84  E-value=0.0058  Score=55.60  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=37.9

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      .++.|+++++++.|.++..+++     ++ .|+..  +|+.  +.     ++.||+|+|...++.++..+
T Consensus       236 l~~~GV~v~~~~~V~~i~~~~~-----~~-~v~l~--dG~~--i~-----aD~Vv~a~G~~pn~~l~~~~  290 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVSSG-----KL-LIKLK--DGRK--VE-----TDHIVAAVGLEPNVELAKTG  290 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEETT-----EE-EEEET--TSCE--EE-----ESEEEECCCEEECCTTHHHH
T ss_pred             HHhcCCEEEeCCEEEEEEecCC-----eE-EEEEC--CCCE--EE-----CCEEEECCCCCccHHHHHHc
Confidence            3456999999999999987654     43 34443  5543  43     48999999987665565443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.0048  Score=55.34  Aligned_cols=33  Identities=30%  Similarity=0.588  Sum_probs=30.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            89999999999999999999 9999999998653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.72  E-value=0.0048  Score=56.07  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++    |.+|.|+|+++.
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            479999999999999998875    689999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.69  E-value=0.0062  Score=60.47  Aligned_cols=31  Identities=29%  Similarity=0.464  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .|+|||+|..|+=+|..|++ |. +|.|+++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            89999999999999999999 96 899999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.68  E-value=0.0043  Score=56.52  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++    |.+|.|+|+++.
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            479999999999999998865    689999998855

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.68  E-value=0.0087  Score=53.54  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            79999999999999999999 9999999998653

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.64  E-value=0.0054  Score=60.48  Aligned_cols=56  Identities=14%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             CCeEEEcCcEEEEEEEe-cCCCCCCeEEEEEEEe--C---CCceEEEEeecCCCcEEEEecCccccHHHHhc
Q 045695          210 SGLTLLLHATVHKVLFR-IKGKARPQAHGVVFRD--A---TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML  275 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~-~~~~~~~~v~gV~~~~--~---~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~  275 (277)
                      .|++|++++.|.++..+ ++     ++.+|++.+  .   +|+..++.     ++.||+|+|---...++..
T Consensus       329 ~GV~v~~~~~v~~i~~~~~~-----~v~~v~~~~~~~~~~~G~~~~i~-----~D~Vv~a~G~~P~~~l~~~  390 (965)
T 2gag_A          329 DGVQVISGSVVVDTEADENG-----ELSAIVVAELDEARELGGTQRFE-----ADVLAVAGGFNPVVHLHSQ  390 (965)
T ss_dssp             TTCCEEETEEEEEEEECTTS-----CEEEEEEEEECTTCCEEEEEEEE-----CSEEEEECCEEECCHHHHH
T ss_pred             CCeEEEeCCEeEEEeccCCC-----CEEEEEEEeccccCCCCceEEEE-----cCEEEECCCcCcChHHHHh
Confidence            58899999999999865 34     788898875  2   24335555     5999999997655566543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.63  E-value=0.0071  Score=55.22  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=27.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--------------CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--------------ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--------------~~VlvlE~g~~~   66 (277)
                      .++|||+|++|+=+|.+|++ +              .+|.|+|+++..
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            59999999999999998875 3              579999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.50  E-value=0.033  Score=51.83  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            69999999999999999999 9999999987

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.43  E-value=0.047  Score=49.87  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            59999999999999999999 9999999985

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.35  E-value=0.0035  Score=56.56  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .-.|+|||+|..|+=+|..|.+ |. +|.+++|...
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            3479999999999999999988 87 5999998854

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.15  E-value=0.0088  Score=56.79  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.0

Q ss_pred             ccEEEEC--CChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIG--GGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIG--sG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||  +|..|+-+|..|++ |.+|.++++.+.
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~  559 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ  559 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence            3599999  99999999999999 999999998855

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.93  E-value=0.0066  Score=51.36  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|..|+=+|..|++ |.+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            79999999999999999999 9999999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.61  E-value=0.0085  Score=52.70  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .|+|||+|..|+-+|..|++ |.+|.|+|+.+...
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            79999999999999999999 99999999997654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.57  E-value=0.012  Score=43.81  Aligned_cols=34  Identities=18%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +-.++|||.|..|..+|..|.+ |.+|+++|+.+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4479999999999999999999 999999999743

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.43  E-value=0.0096  Score=45.11  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|+|||+|..|..+|..|.+ |.+|+++++...
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3479999999999999999998 999999998743

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.38  E-value=0.011  Score=43.87  Aligned_cols=31  Identities=32%  Similarity=0.617  Sum_probs=29.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++|+|+|..|..+|..|.+ |.+|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            69999999999999999999 99999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.23  E-value=0.012  Score=43.21  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++|||+|..|...|..|.+ |.+|+++|+..
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999 99999999863

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.91  E-value=0.094  Score=49.51  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=35.8

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      ...++.|+++++++.|+++.  ++        ++.+.. +|+..++.     ++.||+|+|--..+.++
T Consensus       581 ~~l~~~GV~v~~~~~v~~i~--~~--------~v~~~~-~G~~~~i~-----~D~Vi~a~G~~p~~~l~  633 (671)
T 1ps9_A          581 TTLLSRGVKMIPGVSYQKID--DD--------GLHVVI-NGETQVLA-----VDNVVICAGQEPNRALA  633 (671)
T ss_dssp             HHHHHTTCEEECSCEEEEEE--TT--------EEEEEE-TTEEEEEC-----CSEEEECCCEEECCTTH
T ss_pred             HHHHhcCCEEEeCcEEEEEe--CC--------eEEEec-CCeEEEEe-----CCEEEECCCccccHHHH
Confidence            34455799999999999986  33        344432 56545554     69999999975544443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.90  E-value=0.017  Score=43.54  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|+|+|..|...|..|.+ |.+|+++|+.
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            59999999999999999999 9999999996

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=94.60  E-value=0.052  Score=45.64  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             ccEEEECCCh-hhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGT-AGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~-aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|. +++-+|..+.+ +.+|++++++..
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~  181 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNE  181 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCC
T ss_pred             CceeeecCCCchhhhHHHHHHhCCceEEEEecccc
Confidence            3578888875 56677777888 999999988743

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.37  E-value=0.03  Score=39.66  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      ..++|+|+|..|..++..|.+ | .+|.+++|..
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            469999999999999999998 8 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.21  E-value=0.026  Score=41.51  Aligned_cols=31  Identities=23%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++|+|+|..|..+|..|.+ |.+|+++++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999 99999999863

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.15  E-value=0.044  Score=48.92  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=30.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~~~   66 (277)
                      -.|+|||+|..|+=+|..|++ +.+ |.|+++++..
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            479999999999999999999 998 9999998643

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.85  E-value=0.043  Score=46.63  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|.+.|..|++ |.+|.++.|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            358999999999999999999 99999999874

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.84  E-value=0.04  Score=46.99  Aligned_cols=32  Identities=25%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|.+.|..|++ |.+|.++.|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            368999999999999999999 99999999874

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=93.82  E-value=0.044  Score=48.82  Aligned_cols=34  Identities=35%  Similarity=0.514  Sum_probs=31.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            479999999999999999999 9999999998764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=93.67  E-value=0.048  Score=48.16  Aligned_cols=34  Identities=38%  Similarity=0.670  Sum_probs=31.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            479999999999999999999 9999999999764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=93.60  E-value=0.059  Score=49.56  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .-.|+|||+|..|+=+|..|++ +.+|.|++|.+.+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  213 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQY  213 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3479999999999999999999 9999999999763

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.51  E-value=0.039  Score=44.20  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            48999999999999999999 99999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.49  E-value=0.057  Score=49.70  Aligned_cols=34  Identities=15%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.|+|||+|..|+-+|..|++ +.+|.|++|.+.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            479999999999999999999 9999999999763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.48  E-value=0.06  Score=45.46  Aligned_cols=31  Identities=26%  Similarity=0.519  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|+++++..
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999 99999999863

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.47  E-value=0.053  Score=48.81  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.|+|||+|..|+=+|..|++ |.+|+|+++.+..
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            479999999999999999999 9999999998653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.23  E-value=0.075  Score=42.94  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=29.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .-.|+|||+|..|...|..|.+ |.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3479999999999999999999 9999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.99  E-value=0.052  Score=45.69  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|.+.|..|++ |.+|.++.|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            368999999999999999999 99999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.84  E-value=0.074  Score=45.43  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..++. |++|+|+|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            69999999999999999999 99999999763

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.82  E-value=0.075  Score=43.69  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||+|..|..+|..|++ |. +++|+++....
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~   67 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   67 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcc
Confidence            3479999999999999999999 96 89999998643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.80  E-value=0.081  Score=39.26  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.+.|||+|..|...|..|.+ |.+|.+.+|..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            369999999999999999999 98899999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.74  E-value=0.067  Score=49.29  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .-.|+|||+|..|+-+|..|++ +.+|.|++|.+.+
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            3479999999999999999999 9999999999763

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.74  E-value=0.082  Score=46.47  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+...
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM  178 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence            369999999999999999999 99999999997654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=92.59  E-value=0.081  Score=46.66  Aligned_cols=35  Identities=34%  Similarity=0.448  Sum_probs=31.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+...
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            469999999999999999999 99999999997653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.54  E-value=0.093  Score=43.63  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+.|||+|..|...|..|++ |++|.+++|...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            48899999999999999999 999999998753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.49  E-value=0.087  Score=44.06  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|++.++..
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            58999999999999999999 99999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.45  E-value=0.061  Score=44.88  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-|+|||+|-.|...|..|.+ |.+|+|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            469999999999999999999 99999998653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.37  E-value=0.077  Score=47.79  Aligned_cols=32  Identities=31%  Similarity=0.629  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+||+|+|-.|...|..|.+ |++|+|||+.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999 99999999964

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.31  E-value=0.11  Score=41.38  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||+|..|.+.|..|++ |.+|.+++|...
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4469999999999999999999 999999998754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.21  E-value=0.089  Score=45.13  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=28.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+.|||+|..|.+.|..|++ |.+|.+++|.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            68999999999999999999 9999999985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.94  E-value=0.14  Score=42.41  Aligned_cols=32  Identities=13%  Similarity=0.066  Sum_probs=29.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|||+|..|+-+|..|++ | +|.+++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            479999999999999999999 9 9999999865

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=91.90  E-value=0.12  Score=45.57  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|+|||+|.+|+.+|..|.. |.+|+++|+...
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4589999999999999999988 999999998854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.88  E-value=0.15  Score=43.47  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..|.|||+|..|...|..|++ |+ +|+++++..
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            469999999999999999999 98 999999874

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.80  E-value=0.12  Score=43.85  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ..+.|||+|..|...|..|++ |+  +|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            469999999999999999999 88  999999874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.63  E-value=0.12  Score=39.84  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC--CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~   64 (277)
                      .-.++|||.|..|..+|..|.+  |.+|+++|+..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3469999999999999999976  89999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.61  E-value=0.12  Score=43.52  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+.|||+|..|...|..|++ |++|.+++|.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            59999999999999999999 9999999985

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.50  E-value=0.21  Score=41.99  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||.|..|...|..|++ |++|++.++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4579999999999999999999 999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.43  E-value=0.19  Score=41.97  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+-+|..|++ +.+|.++++.+..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            479999999999999999999 9999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.41  E-value=0.13  Score=44.99  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|+|||+|..|..+|..|.. |.+|+++++...
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4589999999999999999988 999999998853

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.39  E-value=0.13  Score=46.59  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...+.|||.|..|+..|..|++ |++|+++++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3579999999999999999999 9999999985

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=91.27  E-value=0.14  Score=45.89  Aligned_cols=50  Identities=16%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEe--cCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFR--IKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~--~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +...+++.|.+|+++++|++|..+  ++     ++++|+.   +|+  ++.     ++.||+|+|.+
T Consensus       248 l~~~~~~~G~~i~~~~~V~~i~~~~~~~-----~~~~V~~---~g~--~~~-----ad~VV~a~~~~  299 (453)
T 2bcg_G          248 FARLSAIYGGTYMLDTPIDEVLYKKDTG-----KFEGVKT---KLG--TFK-----APLVIADPTYF  299 (453)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTT-----EEEEEEE---TTE--EEE-----CSCEEECGGGC
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEECCCC-----eEEEEEE---CCe--EEE-----CCEEEECCCcc
Confidence            555666679999999999999988  54     8888775   343  344     68899999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.14  E-value=0.13  Score=45.83  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .|.|||.|.+|+++|..|++ |++|.+.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            58999999999999999999 9999999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.14  E-value=0.14  Score=43.94  Aligned_cols=31  Identities=32%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+.|||+|..|...|..|++ |.+|.+++|.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            469999999999999999999 9999999985

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=91.13  E-value=0.15  Score=43.71  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=29.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ++..+.|||+|..|.+.|..|++ |++|.+++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            45679999999999999999999 9999999885

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.13  E-value=0.13  Score=45.54  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|||||.|..|..+|..|.+ |.+|+|||+.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            359999999999999999999 999999998743

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.99  E-value=0.15  Score=45.64  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||.|..|+..|..|++ |++|+++++..
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            368999999999999999999 99999999863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=90.89  E-value=0.23  Score=42.15  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||+|..|+-+|..|++ + +|.++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            479999999999999999999 8 699999884

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=90.85  E-value=0.15  Score=45.67  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|.|||.|.+|+++|..|.+ |.+|.+.|+..
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            369999999999999999999 99999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=90.79  E-value=0.21  Score=44.88  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhh--------------------C-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLS--------------------Q-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La--------------------~-g~-~VlvlE~g~~   65 (277)
                      .-.|+|||+|..|+=+|..|+                    + |. +|.|++|.+.
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            347999999999999999998                    7 76 7999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.77  E-value=0.2  Score=45.02  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..|.|||+|..|...|..|++ |++|+++|+..
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999 99999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=90.75  E-value=0.26  Score=42.72  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...+.|||+|.-|.+.|..|++ |++|.+.+|.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3479999999999999999999 99999999863

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.74  E-value=0.17  Score=42.08  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++|+|+|..|.++|..|++ |.+|+|+.|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            369999999999999999999 99999998863

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.66  E-value=0.16  Score=43.24  Aligned_cols=29  Identities=24%  Similarity=0.375  Sum_probs=27.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      .+.|||+|..|...|..|++ |++|.+++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            47899999999999999999 999999998

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=90.65  E-value=0.25  Score=44.29  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=30.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..|.|||+|..|...|..|++ |++|++.|+...
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            469999999999999999999 999999998754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.56  E-value=0.17  Score=45.06  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=28.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .+.|||.|..|+..|..|++ |++|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999999999999 9999999985

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.56  E-value=0.24  Score=41.89  Aligned_cols=32  Identities=34%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             ccEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|.+.|..|+.|.+|.++.|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLSLYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCceEEEECCH
Confidence            46999999999999999998778999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.55  E-value=0.17  Score=44.65  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.|+|||+|.+|+.+|..|.. |.+|+++++...
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3479999999999999999888 999999998743

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.48  E-value=0.14  Score=41.35  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=29.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.++|||+|..|...|..|.+ |. |+++|+.+.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            3469999999999999999999 99 999998743

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=90.45  E-value=0.24  Score=39.15  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=28.3

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.||| +|..|...|..|++ |.+|.+++|..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999 99999999999999 99999998863

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.31  E-value=0.17  Score=42.98  Aligned_cols=31  Identities=26%  Similarity=0.522  Sum_probs=27.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...+.|||+|..|.+.|..|++ |.+|.++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            3469999999999999999999 9999999 54

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=90.29  E-value=0.3  Score=41.88  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..|.|||+|..|.+.|..|++ |+ +|.++|+..
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            479999999999999999999 97 999999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=90.17  E-value=0.2  Score=43.88  Aligned_cols=34  Identities=26%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .+..|+|+|+|.+|..+|..|.. |. +|.++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            35689999999999999999999 98 999999986

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.10  E-value=0.19  Score=43.67  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|+|+|.+|..++..|.. |.+|+++++..
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999988 99999999863

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.08  E-value=0.29  Score=42.05  Aligned_cols=36  Identities=22%  Similarity=0.568  Sum_probs=31.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      ..-|+|||+|..|+.+|..|+. |. ++.|++......
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~   71 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSY   71 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEecc
Confidence            5679999999999999999999 95 799999986543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.93  E-value=0.23  Score=43.46  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-.|+|||+|.+|+.+|..|.. |.+|+++++...
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4579999999999999999888 999999998754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.82  E-value=0.2  Score=43.58  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|+|+|..|..+|..|.. |.+|+++++..
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999998 99999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.79  E-value=0.26  Score=40.92  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...++|||+|.+|.++|+.|++ |.+|.|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3479999999999999999999 999999988754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=89.75  E-value=0.29  Score=41.26  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..++|||+|.+|.++|..|++ |. +|.|..|..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            369999999999999999999 97 999998863

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=89.73  E-value=0.23  Score=41.95  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .|.|||+|..|.+.|..|+. |+  +|.++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            48899999999999999999 88  899999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=89.70  E-value=0.21  Score=43.29  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|.|||+|..|.+.|..|++ |++|.+++|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            69999999999999999999 9999999886

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.64  E-value=0.24  Score=41.65  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ....|+|||+|..|+.+|..|+. |. ++.|+|.....
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve   72 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVE   72 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence            35689999999999999999999 95 89999988654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.62  E-value=0.32  Score=40.87  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=29.0

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.||| .|..|.+.|..|++ |.+|.++++..
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            699999 99999999999999 99999999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.52  E-value=0.22  Score=44.51  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...+.|||.|..|+..|..||+ |++|+.+|..
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4589999999999999999999 9999999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.51  E-value=0.23  Score=44.83  Aligned_cols=32  Identities=31%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      --++|+|+|..|..+|..|+. |.+|++.|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            369999999999999999999 99999999863

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=89.48  E-value=0.14  Score=45.53  Aligned_cols=50  Identities=18%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +...+++.|++|+++++|++|..+++     ++++|..   +|+  ++.     ++.||+|+|..
T Consensus       240 l~~~~~~~G~~i~~~~~V~~I~~~~~-----~v~~v~~---~g~--~~~-----ad~VV~a~~~~  289 (433)
T 1d5t_A          240 FARLSAIYGGTYMLNKPVDDIIMENG-----KVVGVKS---EGE--VAR-----CKQLICDPSYV  289 (433)
T ss_dssp             HHHHHHHHTCCCBCSCCCCEEEEETT-----EEEEEEE---TTE--EEE-----CSEEEECGGGC
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEeCC-----EEEEEEE---CCe--EEE-----CCEEEECCCCC
Confidence            55555667999999999999998876     8888763   453  344     69999999875

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.41  E-value=0.24  Score=43.20  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .+..|+|+|+|.+|..+|..|.. |. +|.|+++.+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gl  227 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI  227 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            35689999999999999999999 97 8999999844

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.34  E-value=0.26  Score=39.30  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|...|..|++ |.+|.+++|..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999 99999998863

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.29  E-value=0.31  Score=40.76  Aligned_cols=30  Identities=27%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++|+|+|..|.++|..|++ | +|+|+.|..
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            59999999999999999999 9 999998863

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.26  E-value=0.31  Score=41.44  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...|.|||.|..|...|..|++ |++|++.++..
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3479999999999999999999 99999999874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=89.25  E-value=0.29  Score=41.89  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..|.|||+|..|...|..|++ |+ +|.++|+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999 88 999999974

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.23  E-value=0.34  Score=41.32  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ..|.|||+|..|...|..|+. |+ +|.++|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            469999999999999999999 87 999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.17  E-value=0.28  Score=43.86  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||.|.-|++.|..|++ |++|+++++...
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3468899999999999999999 999999998754

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=89.00  E-value=0.29  Score=40.77  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||.|..|...|..|++ |++|++.+|...
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            48899999999999999999 999999998754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.93  E-value=0.35  Score=40.86  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=30.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..|.|||.|..|...|..|++ |++|++.++...
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            479999999999999999999 999999998753

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=88.82  E-value=0.29  Score=40.76  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+.|||.|..|...|..|++ |++|++.+|...
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            58899999999999999999 999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.75  E-value=0.26  Score=43.07  Aligned_cols=33  Identities=33%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-.|+|||+|..|..+|..|.. |.+|+++++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999988 99999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.73  E-value=0.32  Score=40.95  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||.|..|...|..|++ |++|++.++..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999 99999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=88.58  E-value=0.32  Score=39.87  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||+|..|..+|..|+. |. ++.|++.....
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~   64 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVH   64 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcc
Confidence            4579999999999999999999 96 78999987543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=88.51  E-value=0.3  Score=39.73  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||.|..|...|..|++ |++|++.+|...
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            4579999999999999999999 999999998754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.45  E-value=0.34  Score=40.39  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      -.++|||+|.+|.++|+.|++ |. +|.|+.|...
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            369999999999999999999 97 8999988753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=88.39  E-value=0.33  Score=41.31  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .+.|||+|..|.+.|..|++ |+  +|.++++..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            47899999999999999999 98  999999863

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.24  E-value=0.32  Score=42.26  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..|+|+|+|..|..+|..|.+ |.+|++.++.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            469999999999999999999 9999999864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.18  E-value=0.21  Score=41.48  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++|+|+|.+|.++|..|++ |.+|.|..|..
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            369999999999999999999 99999998873

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=88.14  E-value=0.25  Score=47.13  Aligned_cols=32  Identities=16%  Similarity=0.098  Sum_probs=30.0

Q ss_pred             ccEEEEC--CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIG--GGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIG--sG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||  +|..|+-+|..|++ |.+|.|+|+.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            3799998  99999999999999 99999999987

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.05  E-value=0.34  Score=43.81  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|++.|+..
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999 99999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.02  E-value=0.3  Score=43.51  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...-|||.|..|+..|..|++ |++|+++++..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            357799999999999999999 99999999863

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.93  E-value=0.39  Score=39.59  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..|+|.|+|..|..++..|.+ |.+|.++.|..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            359999999999999999999 99999999874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.88  E-value=0.4  Score=40.10  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||.|..|...|..|++ |++|.+.++..
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999 99999999863

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=87.78  E-value=0.58  Score=43.26  Aligned_cols=36  Identities=22%  Similarity=0.568  Sum_probs=31.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      ...|+|||+|..|+.+|..|+. |. ++.|+|......
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~  364 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSY  364 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccc
Confidence            4679999999999999999999 95 899999886543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.78  E-value=0.37  Score=40.32  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.++|+|+|.+|.++|..|++ |. +|.|+.|..
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            469999999999999999999 97 699998863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.77  E-value=0.21  Score=40.04  Aligned_cols=32  Identities=31%  Similarity=0.584  Sum_probs=28.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEE-EcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLL-LERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~Vlv-lE~g~   64 (277)
                      ..+.|||+|..|...|..|++ |.+|++ .+|..
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            469999999999999999999 999998 77764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=87.71  E-value=0.38  Score=40.66  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      .+.|||+|..|.+.|..|++ |  .+|.++++..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            58999999999999999999 8  7899999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.68  E-value=0.39  Score=39.65  Aligned_cols=32  Identities=31%  Similarity=0.407  Sum_probs=29.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|+|.|+|..|..++..|.+ |.+|+++.|...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            59999999999999999999 999999998754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.61  E-value=0.5  Score=39.89  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..+.|||.|..|...|..|++ |.+|.++++...
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            469999999999999999999 999999998643

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=87.61  E-value=0.32  Score=42.25  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-------CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-------~~VlvlE~g~~   65 (277)
                      .+.|||+|..|.+.|..|++ |       .+|.+++|...
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            59999999999999999999 9       99999998754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.52  E-value=0.41  Score=39.59  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|..|...|..|.+ |++|.++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999 99999998863

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=87.49  E-value=0.49  Score=41.63  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=27.7

Q ss_pred             cEEEECCChhhHHHHhhhhCCCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQNASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g   63 (277)
                      .+.|||.|..|+..|..|++|++|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCEEEEEECC
Confidence            478999999999999999999999999985

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.47  E-value=0.39  Score=44.20  Aligned_cols=34  Identities=38%  Similarity=0.617  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||.|-.|..+|..|.+ |.+|+++|+.+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            579999999999999999999 9999999998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.45  E-value=0.36  Score=41.08  Aligned_cols=31  Identities=16%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      -.++|+|+|.+|.++|+.|++ |. +|.|+.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            469999999999999999999 97 89999887

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.44  E-value=0.43  Score=39.04  Aligned_cols=31  Identities=23%  Similarity=0.523  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      .+.|||.|..|...|..|++ | .+|.+.+|..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            47899999999999999999 9 9999999863

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=87.42  E-value=0.38  Score=36.73  Aligned_cols=48  Identities=13%  Similarity=-0.031  Sum_probs=33.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCcc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL  267 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~  267 (277)
                      +...+++.|++++++ +|+++..+++     .   +.+...++   ++.     ++.||+|+|..
T Consensus        62 l~~~~~~~gv~v~~~-~v~~i~~~~~-----~---~~v~~~~g---~i~-----ad~vI~A~G~~  109 (180)
T 2ywl_A           62 LEAHARRYGAEVRPG-VVKGVRDMGG-----V---FEVETEEG---VEK-----AERLLLCTHKD  109 (180)
T ss_dssp             HHHHHHHTTCEEEEC-CCCEEEECSS-----S---EEEECSSC---EEE-----EEEEEECCTTC
T ss_pred             HHHHHHHcCCEEEeC-EEEEEEEcCC-----E---EEEEECCC---EEE-----ECEEEECCCCC
Confidence            334556679999999 9999987665     2   34443344   344     58999999985

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.37  E-value=0.4  Score=39.79  Aligned_cols=32  Identities=25%  Similarity=0.405  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||+|..|.++|..|.+ |.+|.+.+|..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            369999999999999999999 99999999873

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.28  E-value=0.43  Score=37.53  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|+|+ |..|..++..|++ |.+|.++.|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            3899995 9999999999999 99999999874

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=87.27  E-value=0.4  Score=40.76  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      -.|.|||+|..|...|..|+. |+ +|.++|+.
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            469999999999999999999 98 99999997

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=87.26  E-value=0.39  Score=39.44  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .++|||+|.+|.++++.|.+ |. +|.|+.|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999 97 899998863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.24  E-value=0.48  Score=40.25  Aligned_cols=32  Identities=25%  Similarity=0.190  Sum_probs=29.8

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      ..+.|||.|..|...|..|++ | ++|++.++..
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            469999999999999999999 9 9999999875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=87.13  E-value=0.67  Score=39.04  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...+.|||.|..|...|..|++ |++|++.+|..
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3469999999999999999999 99999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=87.10  E-value=0.53  Score=41.86  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~   64 (277)
                      ..+.|||.|..|+..|..|++|.+|+++++..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQNHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHcCCeEEEEecCH
Confidence            47999999999999999999999999999863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.07  E-value=0.39  Score=40.26  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...+.|||.|..|..+|..|.. |.+|++.++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3469999999999999999988 99999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=86.99  E-value=0.61  Score=42.12  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.++.|||.|..|...|..|++ |.+|.+.+|..
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            5579999999999999999999 99999999863

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=86.92  E-value=0.3  Score=41.99  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-------CcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-------~~VlvlE~g~~   65 (277)
                      ..|.|||+|..|.+.|..|++ |       .+|.++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            369999999999999999999 9       89999998754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=86.87  E-value=0.47  Score=42.61  Aligned_cols=54  Identities=13%  Similarity=0.119  Sum_probs=37.1

Q ss_pred             HHhhcCCCC-eEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHH
Q 045695          203 LLEYANPSG-LTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ  271 (277)
Q Consensus       203 ~l~~~~~~g-v~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~  271 (277)
                      +...+.+.| ++|+++++|++|..+++     .   |.+...+|+.  +.     ++.||+|+|.....+
T Consensus       261 l~~~l~~~g~~~i~~~~~V~~i~~~~~-----~---v~v~~~~g~~--~~-----ad~vI~a~~~~~l~~  315 (495)
T 2vvm_A          261 FWEEAAGTGRLGYVFGCPVRSVVNERD-----A---ARVTARDGRE--FV-----AKRVVCTIPLNVLST  315 (495)
T ss_dssp             HHHHHHTTTCEEEESSCCEEEEEECSS-----S---EEEEETTCCE--EE-----EEEEEECCCGGGGGG
T ss_pred             HHHHhhhcCceEEEeCCEEEEEEEcCC-----E---EEEEECCCCE--EE-----cCEEEECCCHHHHhh
Confidence            445555566 99999999999998765     3   3444435543  33     589999999754443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.85  E-value=0.51  Score=39.33  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||.|..|...|..|++ |++|.+.++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48899999999999999999 99999999864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.85  E-value=0.53  Score=44.81  Aligned_cols=31  Identities=39%  Similarity=0.515  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|++ |++|+++|+..
T Consensus       314 kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999 99999999863

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.85  E-value=0.54  Score=39.24  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.++|+|+|.+|.++|..|++ |. +|.|+.|..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            469999999999999999999 95 999998863

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=86.83  E-value=0.42  Score=39.98  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=29.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .-.++|+|+|.+|.++|+.|++ |. +|.|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3479999999999999999999 97 899998863

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.81  E-value=0.41  Score=40.26  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...+.|||.|..|..+|..|.. |.+|++.++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3469999999999999999998 99999999864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=86.70  E-value=0.41  Score=39.94  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             ccEEEEC-CChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIG-GGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|+| +|.+|..+|..|++ |.+|+++.|.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4699999 99999999999999 9999999886

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.64  E-value=0.46  Score=37.53  Aligned_cols=30  Identities=27%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             EEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |+|.|+ |..|..++.+|++ |.+|.++.|..
T Consensus         3 ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            899998 9999999999999 99999999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.62  E-value=0.45  Score=38.09  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..-++|.|+ |..|..++..|++ |.+|+++.|...
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            346999998 9999999999999 999999998743

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=86.56  E-value=0.43  Score=41.28  Aligned_cols=35  Identities=17%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||+|..|+.+|..|+. |. ++.|++.....
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve  154 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIE  154 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCc
Confidence            4579999999999999999999 95 89999987543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.52  E-value=0.5  Score=39.42  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+.|||.|..|...|..|++ |.+|.++++..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999 99999999863

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=86.47  E-value=0.49  Score=39.31  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .-.++|+|+|.+|.++|+.|++ |. +|.|+.|..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3469999999999999999999 95 999998863

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.44  E-value=0.47  Score=36.78  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -++|+|+ |..|..++..|.+ |.+|+++.|...
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            5899998 9999999999999 999999998753

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=86.42  E-value=0.84  Score=42.77  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecC-CCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecC
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIK-GKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~-~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      |.+.++..|.+|++++.|.+|+.+++ +    +++||+.  .+|+.  +.     ++.||....
T Consensus       384 L~r~~~~~Gg~i~l~~~V~~I~~~~~~g----~v~gV~~--~~Ge~--i~-----A~~VVs~~~  434 (650)
T 1vg0_A          384 FCRMCAVFGGIYCLRHSVQCLVVDKESR----KCKAVID--QFGQR--II-----SKHFIIEDS  434 (650)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEEETTTC----CEEEEEE--TTSCE--EE-----CSEEEEEGG
T ss_pred             HHHHHHHcCCEEEeCCEeeEEEEeCCCC----eEEEEEe--CCCCE--EE-----cCEEEEChh
Confidence            65667778999999999999999873 3    8999883  35654  43     577776444

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=86.42  E-value=0.53  Score=40.12  Aligned_cols=32  Identities=25%  Similarity=0.045  Sum_probs=28.1

Q ss_pred             cEEEECCChhhHH-HHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCP-LAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~-aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||.|.+|++ +|..|.+ |.+|.+.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            5899999999997 7777888 999999999754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=86.38  E-value=0.62  Score=36.75  Aligned_cols=32  Identities=25%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|+|.| +|..|..++..|.+ |.+|+++.|...
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE   35 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            388999 79999999999999 999999999854

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=86.36  E-value=0.54  Score=39.80  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .|.|||+|..|...|..|+. |+ +|.++|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            58999999999999999998 86 899999864

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=86.28  E-value=0.55  Score=43.48  Aligned_cols=36  Identities=22%  Similarity=0.568  Sum_probs=31.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      ...|+|||+|..|+.+|..|+. |. ++.|+|.+....
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~  363 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSY  363 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcc
Confidence            4589999999999999999999 95 899999987543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.25  E-value=0.4  Score=43.06  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      --|+|||+|..|...|..|.+ |.+|+|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            359999999999999999999 9999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=86.19  E-value=0.47  Score=43.45  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.|+|||+|..|+-+|..|++ +.+|.+++|.+.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~  221 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF  221 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcc
Confidence            479999999999999999999 9999999998654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.15  E-value=0.52  Score=38.97  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .+.|||.|..|...|..|++ |.  +|++.++..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            48899999999999999999 98  899998863

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=86.06  E-value=0.68  Score=39.39  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             CccEEEECCC-hhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGG-TAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG-~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ...++|||+| +.|..+|..|.. |.+|.|++|.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4589999999 579999999999 9999999775

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=86.02  E-value=0.56  Score=40.65  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...|.|||.|..|...|..|++ |++|++.++..
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4579999999999999999999 99999999863

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=86.00  E-value=0.59  Score=39.54  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=27.8

Q ss_pred             cEEEECCChhhHHHHhhhhC---CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~   64 (277)
                      .|.|||+|..|.+.|..|++   |.+|+++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            48899999999999999986   57999999974

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=85.97  E-value=0.52  Score=39.90  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      ..|.|||.|..|...|..|++ |+ +|++.++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            469999999999999999999 99 99999996

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.94  E-value=0.54  Score=39.91  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ..|.|||.|..|.+.|..|.+ |.  +|++.++..
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            469999999999999999999 98  999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=85.91  E-value=0.53  Score=39.14  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+ |..|...|..|++ |++|++++|..
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            6999999 9999999999999 99999999863

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=85.85  E-value=0.49  Score=40.17  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      .-.++|+|+|-+|.++|+.|++ |. +|.|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3469999999999999999999 97 89999887

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=85.83  E-value=0.55  Score=41.17  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=26.1

Q ss_pred             cEEEECCChhhHHHHhhhhC--CCcEEEEc
Q 045695           34 DYIIIGGGTAGCPLAATLSQ--NASVLLLE   61 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~--g~~VlvlE   61 (277)
                      .+.|||+|..|.+.|..|++  |++|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            58999999999999999975  89999998

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=85.82  E-value=0.55  Score=40.46  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -++|||||.-|..+|+.+.+ |++|++++..+.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            48999999999999999888 999999987654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=85.63  E-value=0.55  Score=40.59  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..-|+|+|.|..|..+|..|.+ |.+|++.|..
T Consensus       175 GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~  207 (355)
T 1c1d_A          175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD  207 (355)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4579999999999999999999 9999998864

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.60  E-value=0.66  Score=42.08  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +...+-|||.|..|...|..|++ |++|.+.+|..
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999 99999999864

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=85.57  E-value=0.49  Score=41.97  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-.++|||.|..|..+|..|.. |.+|++.|+.+
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3479999999999999999988 99999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=85.46  E-value=0.66  Score=41.89  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .++.|||.|..|...|..|++ |++|.+.+|..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999 99999999864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=85.37  E-value=0.61  Score=38.70  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=28.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      ..++|||+|.+|.++|+.|.+ |. +|.|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            469999999999999999999 96 89999886

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=85.28  E-value=0.72  Score=39.40  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      ..|.|||+|..|.+.|..|++ |.  +|.++|..
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            469999999999999999999 86  89999985

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=85.19  E-value=0.65  Score=37.88  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-C----CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g----~~VlvlE~g~~   65 (277)
                      .+.|||.|..|...|..|++ |    .+|.+.+|...
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            59999999999999999999 9    79999998754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=85.16  E-value=0.74  Score=36.39  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|+|.|+ |..|..++..|.+ |.+|.++.|...
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             EEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            5999994 9999999999999 999999999854

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=85.14  E-value=0.34  Score=39.29  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..+.|||.|..|.+.|..|.+ |++|+++++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            469999999999999999999 9999998874

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=85.13  E-value=0.63  Score=38.21  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|..|...|..|.+ |.+|.+.+|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999998 99999999863

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=85.02  E-value=0.61  Score=42.22  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.|+|||.|..|..+|..|.. |.+|++.|+.+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999988 99999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=85.02  E-value=0.71  Score=39.39  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=29.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ..+.|||+|..|.+.|..|+. |+ +|.++|....
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            469999999999999999998 88 9999998753

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=84.80  E-value=0.44  Score=38.96  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=27.5

Q ss_pred             cEEEECC-C-hhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG-G-TAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G-~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -++|.|+ | -.|..+|..|++ |.+|+++.|..
T Consensus        24 ~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           24 VVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             EEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            5899998 7 599999999999 99999998864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=84.75  E-value=0.37  Score=42.96  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=39.0

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      +...+.+.|++|+++++|++|..+++     .+..|  .. ++..  +.     ++.||+|++.....+||
T Consensus       240 l~~~l~~~g~~i~~~~~V~~i~~~~~-----~~~~v--~~-~~~~--~~-----ad~vv~a~p~~~~~~ll  295 (477)
T 3nks_A          240 LETHLTSRGVSVLRGQPVCGLSLQAE-----GRWKV--SL-RDSS--LE-----ADHVISAIPASVLSELL  295 (477)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEECGG-----GCEEE--EC-SSCE--EE-----ESEEEECSCHHHHHHHS
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEEcCC-----ceEEE--EE-CCeE--EE-----cCEEEECCCHHHHHHhc
Confidence            44555567999999999999998776     32333  33 3332  43     58999999986665554

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=84.74  E-value=0.63  Score=41.98  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ++.|||.|..|...|..|++ |++|.+.+|.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            58999999999999999999 9999999985

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=84.74  E-value=0.65  Score=39.04  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .|.|||+|..|.+.|..|++ ++  +|.++|+..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            48899999999999999999 87  899999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=84.69  E-value=0.99  Score=40.73  Aligned_cols=52  Identities=23%  Similarity=0.269  Sum_probs=38.3

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+.+.|++++.+ +|+++..++++    ++.+|+..  +|+  ++.     ++.||.|+|...
T Consensus       179 L~~~a~~~gv~~~~~-~v~~i~~~~~~----~~~~v~~~--~g~--~~~-----ad~vV~A~G~~S  230 (511)
T 2weu_A          179 LSEYAIARGVRHVVD-DVQHVGQDERG----WISGVHTK--QHG--EIS-----GDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHTTCEEEEC-CEEEEEECTTS----CEEEEEES--SSC--EEE-----CSEEEECCGGGC
T ss_pred             HHHHHHHCCCEEEEC-eEeEEEEcCCC----CEEEEEEC--CCC--EEE-----cCEEEECCCcch
Confidence            344555679999999 99999986654    67777764  454  344     699999999854

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.55  E-value=0.77  Score=41.19  Aligned_cols=33  Identities=42%  Similarity=0.602  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhCCCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~   65 (277)
                      -.++|+|+|..|..+|..|.++.+|.|+|+...
T Consensus       236 ~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~  268 (461)
T 4g65_A          236 RRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQ  268 (461)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             cEEEEEcchHHHHHHHHHhhhcCceEEEecCHH
Confidence            479999999999999999866889999999843

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.49  E-value=0.89  Score=41.01  Aligned_cols=31  Identities=19%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C--CcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g   63 (277)
                      ..+.|||.|..|+..|..|++ |  ++|+++++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            369999999999999999998 5  799999974

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=84.49  E-value=0.74  Score=41.54  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             ccEEEECCChhhHHHHhhhhC--CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ--NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~--g~-~VlvlE~g~~   65 (277)
                      ..|.|||.|..|+..|..|++  |+ +|+++++...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            369999999999999999987  79 9999998866

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=84.43  E-value=0.84  Score=41.24  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=30.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..++-|||.|..|...|..|++ |++|++.++..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3479999999999999999999 99999999874

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=84.32  E-value=0.9  Score=37.39  Aligned_cols=31  Identities=13%  Similarity=0.119  Sum_probs=27.6

Q ss_pred             cEEEECC---ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG---GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs---G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -++|.|+   |..|..+|..|++ |.+|+++.|..
T Consensus         8 ~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            8 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4899997   5899999999999 99999998875

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=84.27  E-value=0.75  Score=36.97  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=27.6

Q ss_pred             EEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           35 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++|.|+ |..|..+|..|++ |.+|+++.|...
T Consensus         4 vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            788887 8999999999999 999999998753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=84.25  E-value=0.77  Score=37.59  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCc-EEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NAS-VLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~-VlvlE~g~   64 (277)
                      ..+.|||.|..|...|..|++ |.+ |.+.++..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            369999999999999999999 998 89998863

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=84.24  E-value=1.2  Score=38.15  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      ...|.|||+|..|...|+.|+. |.  +|.++|..
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            4579999999999999999999 86  89999985

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=84.20  E-value=0.74  Score=38.88  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~   65 (277)
                      ..|.|||+|..|...|+.|+. |+  +|.|+|....
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            469999999999999999998 87  8999998753

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=84.20  E-value=0.75  Score=39.56  Aligned_cols=31  Identities=32%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||.|..|.+.|..|.+ |.+|++.++..
T Consensus        10 kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999 99999999874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=84.11  E-value=0.71  Score=40.64  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .-.|+|||+|..|..+|..|.. |. +|++++|..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3469999999999999999998 98 899999864

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=84.02  E-value=0.96  Score=40.45  Aligned_cols=50  Identities=14%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             CCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC--------------CCceEEEEeecCCCcEEEEecCccccH
Q 045695          210 SGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA--------------TGAKHRAYLKNGPKNEIIVSAGALGSP  270 (277)
Q Consensus       210 ~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~--------------~g~~~~i~~~~~~a~~VVlAaG~~~tp  270 (277)
                      .|++|++++.+.+|.-+ +     ++.+|++.+.              +|+..++.     ++.||+|+|.-.++
T Consensus       265 ~gv~i~~~~~~~~i~~~-~-----~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~-----~d~vi~a~G~~p~~  328 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK-R-----KVERIVLGRNELVSDGSGRVAAKDTGEREELP-----AQLVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEECSEEEEEEECS-S-----SCCEEEEEEEEEEECSSSSEEEEEEEEEEEEE-----CSEEEECSCEECCC
T ss_pred             ceEEEEeCCCCeEEecC-C-----cEeEEEEEEEEecCCCcccccccCCCceEEEE-----cCEEEEccccccCC
Confidence            68999999999999754 3     5666766531              23334554     68999999975544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=84.01  E-value=0.83  Score=40.85  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=27.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|+|+|+|..|..+|..|++ |.+|.+++|.
T Consensus         5 ~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            5 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            58999999999999999999 9999999885

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=84.00  E-value=0.75  Score=39.03  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C----CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N----ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g----~~VlvlE~g~   64 (277)
                      ..+.|||.|..|.+.|..|++ |    .+|.+.+|..
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            469999999999999999999 8    7999999875

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=83.99  E-value=0.64  Score=41.44  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -.++|||.|..|..+|..|.. |.+|++.|+.+
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp  280 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDP  280 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999988 99999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=83.98  E-value=0.88  Score=43.40  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ---|-|||+|..|.-.|..++. |.+|+++|..+
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            3579999999999999999999 99999999864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.91  E-value=0.71  Score=39.75  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ...|+|||.|..|+.+|..|+. |. ++.|+|-...
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence            4579999999999999999999 96 8999987653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=83.83  E-value=0.75  Score=36.31  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=27.7

Q ss_pred             EEEEC-CChhhHHHHhhhh-C-CCcEEEEcCCCC
Q 045695           35 YIIIG-GGTAGCPLAATLS-Q-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIG-sG~aG~~aA~~La-~-g~~VlvlE~g~~   65 (277)
                      ++|.| +|..|..+|..|+ + |.+|+++.|...
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            89999 5999999999999 7 999999998743

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=83.83  E-value=0.64  Score=39.65  Aligned_cols=32  Identities=16%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|+|.|..|...|..|.+ |. |+++|+.+.
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~  148 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENV  148 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChh
Confidence            369999999999999999999 99 999998754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=83.81  E-value=0.8  Score=38.93  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ...|.|||+|..|.+.|..|+. +.  +|.++|...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3579999999999999999998 76  899999864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=83.81  E-value=0.86  Score=38.80  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ..|.|||+|..|.+.|..|+. +. +|.++|....
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            369999999999999999998 77 9999998753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=83.69  E-value=1.1  Score=36.51  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||.|..|...|..|.+ |.+|.+.++..
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            58999999999999999999 99999999863

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=83.65  E-value=0.83  Score=39.11  Aligned_cols=31  Identities=32%  Similarity=0.416  Sum_probs=28.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|.|||.|..|.+.|..|.+ |.+|++.++..
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            59999999999999999999 99999998864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=83.65  E-value=0.86  Score=37.98  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             ccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-|+|.|+ |..|..++..|.+ |.+|+++.|...
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            35999998 9999999999999 999999999765

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=83.56  E-value=0.78  Score=39.17  Aligned_cols=31  Identities=16%  Similarity=0.301  Sum_probs=28.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      ..|.|||+|..|.++|+.|+. +.  ++.++|..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            469999999999999999998 76  89999985

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=83.54  E-value=0.63  Score=38.06  Aligned_cols=29  Identities=24%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      .+.|||.|..|...|..|++ |++|++.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            37899999999999999999 999999766

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=83.51  E-value=0.87  Score=38.66  Aligned_cols=31  Identities=19%  Similarity=0.507  Sum_probs=28.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .|.|||+|..|.+.|+.|+. +.  +|.++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            48899999999999999998 76  899999975

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=83.47  E-value=1.3  Score=37.39  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..-|+|.|+ |..|..++..|++ |.+|+++.|..
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            346999997 9999999999999 99999999854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=83.43  E-value=0.84  Score=36.54  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             ccEEEEC-CChhhHHHHhhhhC-C-CcEEEEcCCCC
Q 045695           33 YDYIIIG-GGTAGCPLAATLSQ-N-ASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIG-sG~aG~~aA~~La~-g-~~VlvlE~g~~   65 (277)
                      .-++|.| +|..|..+|..|++ | .+|+++.|...
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~   59 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA   59 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh
Confidence            3599999 69999999999999 9 89999998754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=83.26  E-value=0.64  Score=44.21  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..|-|||+|..|...|..|++ |++|++.|+..
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            359999999999999999999 99999999864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=83.20  E-value=0.58  Score=42.72  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      -.++|+|+|-+|.++|+.|++ |.+|+++.|.
T Consensus       365 k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~  396 (523)
T 2o7s_A          365 KTVVVIGAGGAGKALAYGAKEKGAKVVIANRT  396 (523)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHHCC-CEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            369999999999999999999 9999999886

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=83.19  E-value=0.88  Score=38.58  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=29.5

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..-|+|.|+ |..|..++..|.+ |.+|+++.|...
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457999998 9999999999999 999999998754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=83.18  E-value=0.95  Score=38.74  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||.|..|...|..|+. |.+|++.++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            3469999999999999999999 999999998653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=83.02  E-value=0.93  Score=38.78  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      ....|.|||+|..|.+.|+.|+. |.  ++.++|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34579999999999999999988 75  89999985

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=82.98  E-value=0.68  Score=41.23  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=27.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC---cEEEEc
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA---SVLLLE   61 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~---~VlvlE   61 (277)
                      ...++|+|+|.+|.++|..|.+ |.   +|.|++
T Consensus       186 ~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          186 EITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            3469999999999999999999 97   899999

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=82.69  E-value=1.1  Score=36.29  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC----cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA----SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~----~VlvlE~g~   64 (277)
                      .+.|||.|..|...|..|.+ |+    +|.+.+|..
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            58999999999999999999 98    999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=82.66  E-value=1  Score=41.26  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             HHhhcCCC-CeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPS-GLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~-gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+++. |++++.+ +|++|..++++    ++.+|+..  +|+  ++.     ++.||+|+|...
T Consensus       200 L~~~~~~~~Gv~i~~~-~V~~i~~~~~g----~~~~v~~~--~G~--~i~-----ad~vI~A~G~~S  252 (550)
T 2e4g_A          200 LRRFATEKLGVRHVED-RVEHVQRDANG----NIESVRTA--TGR--VFD-----ADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHSCCEEEEC-CEEEEEECTTS----CEEEEEET--TSC--EEE-----CSEEEECCGGGC
T ss_pred             HHHHHHhcCCcEEEEC-eEeEEEEcCCC----CEEEEEEC--CCC--EEE-----CCEEEECCCCch
Confidence            33455555 9999999 99999987654    67777664  453  344     699999999743

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=82.65  E-value=1.1  Score=37.46  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=26.2

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -|+|.|+ |..|..++..|.+ |.+|+++.|..
T Consensus         4 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             eEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            4899997 9999999999999 99999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=82.65  E-value=1.5  Score=38.72  Aligned_cols=47  Identities=15%  Similarity=0.113  Sum_probs=34.6

Q ss_pred             eEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHH
Q 045695          212 LTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL  273 (277)
Q Consensus       212 v~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lL  273 (277)
                      .+|+++++|++|..+++     .   +.+...+|+.  +.     ++.||+|+......++|
T Consensus       248 ~~i~~~~~V~~i~~~~~-----~---~~v~~~~g~~--~~-----ad~vi~a~p~~~~~~l~  294 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGS-----C---YSLELDNGVT--LD-----ADSVIVTAPHKAAAGML  294 (470)
T ss_dssp             EEEECSCCEEEEEECSS-----S---EEEEESSSCE--EE-----ESEEEECSCHHHHHHHT
T ss_pred             CEEEeCCceEEEEEcCC-----e---EEEEECCCCE--EE-----CCEEEECCCHHHHHHHc
Confidence            79999999999998876     3   4444445654  33     58999999886666654

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=82.57  E-value=0.72  Score=40.37  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CC---cEEEEcCCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NA---SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~---~VlvlE~g~   64 (277)
                      ...|+|||+ |.+|..|+..+.. |.   +|.++|+..
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            568999999 9999999999888 97   999999865

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=82.50  E-value=0.84  Score=40.62  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=30.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ...|+|||+|..|+.+|..|+. |. ++.|+|....
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~V   75 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   75 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEe
Confidence            4689999999999999999999 95 8999987643

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=82.48  E-value=1.4  Score=37.71  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+-|||.|..|...|..|.. |.+|++.++...
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~  198 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKK  198 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCch
Confidence            3469999999999999999999 999999998754

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=83.15  E-value=0.26  Score=38.98  Aligned_cols=33  Identities=27%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ..+.|||.|..|...|..|.+ |.+|.+.+|...
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            458999999999999999999 999999988644

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=82.38  E-value=2  Score=39.36  Aligned_cols=35  Identities=14%  Similarity=0.079  Sum_probs=31.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ..+-.+||||.|..|..+|..|.+ |.+|+++|+.+
T Consensus       125 ~~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~  160 (565)
T 4gx0_A          125 DTRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNY  160 (565)
T ss_dssp             TCCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCH
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence            345689999999999999999999 99999999874

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=82.15  E-value=1.3  Score=37.84  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...+.|||.|..|...|..|.. |.+|++.++...
T Consensus       146 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~  180 (333)
T 2d0i_A          146 GKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK  180 (333)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            3469999999999999999999 999999998753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=82.06  E-value=1.3  Score=37.61  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=27.7

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      .|.|||+ |..|.+.|..|++ +  .+|.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            4899998 9999999999999 7  6899998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	2e-47
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	2e-25
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	9e-25
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	8e-24
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-21
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	3e-20
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-18
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	6e-07
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	1e-06
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	5e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	7e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	8e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	8e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	5e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	7e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	7e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	8e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	4e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	5e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	6e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	7e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.001
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	0.002
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.003
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.003
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.004

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  159 bits (403), Expect = 2e-47
 Identities = 117/263 (44%), Positives = 164/263 (62%), Gaps = 7/263 (2%)

Query: 18  YSFMHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGS 77
            SF ++AT  +    YDY+I+GGGT+GCPLAATLS+   VL+LERG  P   PN+     
Sbjct: 12  LSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADG 71

Query: 78  FGAAL-SDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP--YYVRETGWDE 134
           F   L  +    +P +RF+SEDG+ N R RVLGG S +NAG Y RA    Y      WD 
Sbjct: 72  FVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDM 131

Query: 135 RLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQN 194
            LVN++Y+WVE  + ++P  + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNK 191

Query: 195 GQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKN 254
           G RH A +LL   N + L + +HA+V K++F         A GV++RD+ G  H+A++++
Sbjct: 192 GTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLT--ATGVIYRDSNGTPHQAFVRS 249

Query: 255 GPKNEIIVSAGALGSPQLLMLSG 277
             K E+IVSAG +G+PQLL+LSG
Sbjct: 250 --KGEVIVSAGTIGTPQLLLLSG 270

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  101 bits (252), Expect = 2e-25
 Identities = 61/291 (20%), Positives = 99/291 (34%), Gaps = 54/291 (18%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYG-NPNITNLGSFGAALSDLSSTS 89
            DYII GGG  G   AA L++N   SVL++E G       P I +L ++G    D+  +S
Sbjct: 18  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYG----DIFGSS 73

Query: 90  PSQRFISEDGVINSRA------RVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESY-- 141
               + + +   N++         LGG + +N G +TR     V            ++  
Sbjct: 74  VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDN 133

Query: 142 -----------------------------QWVEKVVAFEPPMRQWQ-----SAVRDGLVE 167
                                          V   V   P            A+   + +
Sbjct: 134 VAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVED 193

Query: 168 VGVLPYNGFTY-DHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFR 226
            GV     F   D    +    T+ +   +   A + L          +L       +  
Sbjct: 194 RGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLL 253

Query: 227 IKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
            +    P+A GV F    G  H  Y     K+E++++AG+  SP +L  SG
Sbjct: 254 SQNGTTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG 300

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 99.3 bits (246), Expect = 9e-25
 Identities = 55/269 (20%), Positives = 83/269 (30%), Gaps = 30/269 (11%)

Query: 33  YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP- 90
           YDYII+G G  G   A  LS+    VLLLERGG        T +  +  +        P 
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62

Query: 91  --------SQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPY-----------YVRETG 131
                   S  F     +      ++GGG+ +N   Y                 +     
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 122

Query: 132 WDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIF 191
           +  +L +            +  + Q  + V   L   G          +      G + F
Sbjct: 123 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAF 182

Query: 192 DQNGQRHTAADLLEYA---NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKH 248
           D    +                  T   +  V  V+         Q  GV   D T   +
Sbjct: 183 DFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLGPN 237

Query: 249 RAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
                  PK  +I+SAGA G+ ++L  SG
Sbjct: 238 GFIPVT-PKGRVILSAGAFGTSRILFQSG 265

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 97.3 bits (241), Expect = 8e-24
 Identities = 63/290 (21%), Positives = 108/290 (37%), Gaps = 53/290 (18%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
           YDYII GGG  G  +AA L++N    VL++E+G     +  I        A   +  T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIED---PNAYGQIFGTTV 81

Query: 91  SQRFISEDGVIN-----SRARVLGGGSCLNAGFY----TRAAPYYVRETGWDERLVNESY 141
            Q +++   + N        + LGG + +N   +          + +  G +    +  +
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMF 141

Query: 142 QWVEKVVAFEPPMRQWQSAV---------RDGLVEVGVL----PYNGFTYDHLYGTKIGG 188
           ++++K  A   P     +A           +G V+ G      P++      +      G
Sbjct: 142 EYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALG 201

Query: 189 ---------------------TIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRI 227
                                   +Q       A LL     S L +L    V KVLF+ 
Sbjct: 202 VPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFK- 260

Query: 228 KGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           +  + PQA GV F          +     K+E++++AG+  SP +L  SG
Sbjct: 261 QTASGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSG 306

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 90.8 bits (224), Expect = 1e-21
 Identities = 33/291 (11%), Positives = 63/291 (21%), Gaps = 56/291 (19%)

Query: 33  YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNITNLGSFGAALS---DLSST 88
           YD +I+G G  GC  A  L      V + + G    G     +  +            + 
Sbjct: 5   YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNV 64

Query: 89  SPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQ------ 142
              Q       V       L   S   + F+ R      ++   +      +        
Sbjct: 65  IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMST 124

Query: 143 ----------------------------WVEKVVAFEPPMRQWQSAVRDGLVEVGVL--- 171
                                       W       E   +      ++ +    VL   
Sbjct: 125 HWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKL 184

Query: 172 --------PYNGFTYDHLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKV 223
                    +          +         N            A      L       +V
Sbjct: 185 AEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERV 244

Query: 224 LFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 274
           +         +   +   D               +  +++AGA+ + QLL+
Sbjct: 245 VRNALNS---EIESLHIHDLISGDRFEI----KADVYVLTAGAVHNTQLLV 288

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 86.9 bits (214), Expect = 3e-20
 Identities = 41/296 (13%), Positives = 75/296 (25%), Gaps = 58/296 (19%)

Query: 33  YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS-------------------------P 66
              ++IG G  G   A  L+Q      ++E G S                          
Sbjct: 8   VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLAD 67

Query: 67  YGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP-- 124
             +  ++N   FG   S               G+   + R +GGGS +N G         
Sbjct: 68  KTDQPVSNFMGFGINKSIDRYVGV-LDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNY 126

Query: 125 -YYVRETGWDERLVNESYQWVEKVVAFEPPMRQWQS---------AVRDGLVEVGV---- 170
              +  +     + N+ +      +      + W             R      G     
Sbjct: 127 FEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAF 186

Query: 171 ----LPYNGFTYDHLYGTKIGGTIFDQNGQRH-----TAADLLEYANPSG-LTLLLHATV 220
                 +     +        G   +     +          L  A  +G LT+     V
Sbjct: 187 VPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRV 246

Query: 221 HKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 276
            KV              +  +    A             +  +AG++G+ +LL+  
Sbjct: 247 TKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-----RVFFAAGSVGTSKLLVSM 297

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 82.3 bits (202), Expect = 1e-18
 Identities = 42/298 (14%), Positives = 79/298 (26%), Gaps = 57/298 (19%)

Query: 32  YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS------------------------- 65
           Y   ++IG G      A  L +     L+LE G                           
Sbjct: 2   YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 66  PYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAP- 124
                 + +         ++   +     ++ D +     R +GGGS +N G        
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 125 --YYVRETGWDERLVNESYQWVEKVVAFEPPMRQW--------------QSAVRDGLVEV 168
               +        + +  +     ++       +W              + A + GL  V
Sbjct: 122 YFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTV 181

Query: 169 GVLPYNGFTYDHLYG-------TKIGGTIFDQNGQRHTAADLLEY--ANPSGLTLLLHAT 219
            V     F Y                  I+  N  + +              +T+     
Sbjct: 182 FVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQ 241

Query: 220 VHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 277
           V  +     G     A  V  +D  G        +     + + AG+LGS +LL+ + 
Sbjct: 242 VKTIRQTKDGG---YALTVEQKDTDGKLLATKEISC--RYLFLGAGSLGSTELLVRAR 294

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 24 ATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGN 69
          A A+ P    D +++G G AG   A + + + A V+L+E+     GN
Sbjct: 8  ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 23 NATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNITNLGSFG 79
           A AA P      +++G G+AG   +    +  A+V+L+++     GN  I+  G   
Sbjct: 10 KAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNA 67

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLG 76
          YD I+IGGG +G   A   ++  A+VLLL++G        I+  G
Sbjct: 3  YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGG 47

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYG 68
          YD I++G G   C L+  +S N   VL ++R     G
Sbjct: 7  YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 43

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSF 78
          Y + IIIG G AG   AA L++   SV + + G        ++  G  
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFC 51

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 24 ATAAQPVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGN 69
          A AA      D +IIG G AG   A +     A V+LLE+   P GN
Sbjct: 15 AIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 8e-06
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAALSD 84
           D +IIG G AG  LA  L+    V++L +G    G+      G   A   +
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQ-GGIAAVFDE 58

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 31 SYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYG 68
          +++D I++G G+ G      L++     LL++    P+ 
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 33 YDYIIIGGGTAGCPLAATLSQNA-------SVLLLERGGSP 66
           D +I+G G AG   A  L Q A        V L+E+    
Sbjct: 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYG 68
          YD I++G G   C L+  LS +   VL +++     G
Sbjct: 6  YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 42.4 bits (98), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 30 VSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGN 69
          V Y D ++IGGG AG   A    Q   S ++L        +
Sbjct: 3  VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69
          Y+ ++IGGG  G  +A  L++ N +  L E G      
Sbjct: 5  YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 42

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITN 74
          +D +IIGGG AG   A   +Q   +   +E+ G   G      
Sbjct: 6  HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVG 48

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
          YD I+IGGG+ G   A   ++ NA V L+E+ 
Sbjct: 2  YDLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
          V+ YDY++IGGG+ G   A   ++  A   ++E  
Sbjct: 1  VASYDYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITN 74
          +D I+IG G  G   A   +Q      L+E+     G   +  
Sbjct: 4  FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGG 46

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69
          YD +++GGG  G   A   +     V ++ER  +  G 
Sbjct: 7  YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
          YDYI IGGG+ G       +       L+E  
Sbjct: 3  YDYIAIGGGSGGIASINRAAMYGQKCALIEAK 34

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 29 PVSYYDYIIIGGGTAGCPLAATLSQN-ASVLLLERGGSPYGNPNITNLGSFGAALSDLSS 87
          PV  +D ++IG G AG   A  +SQ+  +  LL +   P  +  ++  G    AL +   
Sbjct: 4  PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSK-VFPTRSHTVSAQGGITVALGNTHE 62

Query: 88 TSPSQRF 94
           +     
Sbjct: 63 DNWEWHM 69

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69
          YDYII+G G  G   A  L + N  VL++E+     GN
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 33  YDYIIIGGGTAGCPLAATLSQNA--SVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSP 90
            D +++G G+AG   A  +S+N    V ++E+  SP G          G   S +    P
Sbjct: 34  TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG-----GAWLGGQLFSAMIVRKP 88

Query: 91  SQRFISEDGV 100
           +  F+ E GV
Sbjct: 89  AHLFLDEIGV 98

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
           + +++G G  G   A   +Q    V ++E+G
Sbjct: 4  TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 32 YYDYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPYGN 69
            D  I+G G AG   A   +Q   NA + L+ +      +
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH 45

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG 64
          YD I IGGG AG   +A L       L+++R  
Sbjct: 43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69
           D +IIGGG  G   A   +Q       +E+ G+  G 
Sbjct: 4  NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
             +IIGGG  G   A    Q     +L+E  
Sbjct: 6  TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 31 SY-YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG 63
          SY +D IIIGGG+ G   A   ++ +  V++L+  
Sbjct: 1  SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV 35

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 31 SYYDYIIIGGGTAGCPLAATLSQNA------SVLLLERGGSPY 67
          SY D +I+G G AG   A  LS+         V ++++  +  
Sbjct: 6  SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 33 YDYIIIGGGTAGCPLAATLSQN--ASVLLLERGGSPYG 68
             +IIG G  G  LA  L      ++ +L++G     
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMP 39

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 33 YDYIIIGGGTAGCPLAATLSQ-----NASVLLLERGGSPYGN 69
           D +IIGGG +GC  A   +         V L+E+       
Sbjct: 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG 63

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 31 SYYDYIIIGGGTAGCPLAATLS-QNASVLL----LERGGSPYGNPNI 72
          + Y  +I+G G +G   A  L+ +   V L    L+    P+  P  
Sbjct: 1  AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKP 47

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGN 69
          QP    D +++G G +G      L +   SV ++E  G   G 
Sbjct: 3  QPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 45

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 31  SYYDYIIIGGGTAGCPLAATLSQN---ASVLLLER-GGSPYGNPNITNLGSFGAALSDLS 86
           S+  +++IGGGTA    A ++      A VL++      PY  P ++    F    +   
Sbjct: 3   SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTK 62

Query: 87  STSPSQRFISEDGV 100
           +    Q    E  +
Sbjct: 63  TLRFKQWNGKERSI 76

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 31/144 (21%), Positives = 46/144 (31%), Gaps = 13/144 (9%)

Query: 34  DYIIIGGGTAGCPLAATLSQN--ASVLLLERGGSPYGNPNITNLGS----------FGAA 81
           D +I G G  G   A  L Q     V LLE            N+             G A
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62

Query: 82  LSDLSSTSPSQRFISEDG-VINSRARVLGGGSCLNAGFYTRAAPYYVRETGWDERLVNES 140
           L+  +  +   R+I + G  + S  R +  G+        R     +      ERL  ++
Sbjct: 63  LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQA 122

Query: 141 YQWVEKVVAFEPPMRQWQSAVRDG 164
            +    V   E    +     RDG
Sbjct: 123 VRTGLGVERIEERDGRVLIGARDG 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.96
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.96
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.85
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.83
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.82
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.72
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.72
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.72
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.7
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.66
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.65
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.63
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.56
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.55
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.46
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.29
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.25
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.17
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.15
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.0
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.89
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.87
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.84
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.78
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.78
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.76
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.75
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.7
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.7
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.7
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.65
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.64
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.64
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.63
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.62
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.61
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.6
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.56
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.55
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.55
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.52
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.51
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.48
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.46
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.45
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.42
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.41
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.38
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.38
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.35
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.33
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.33
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.31
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.26
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.25
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.23
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.19
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.17
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.15
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.12
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.04
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.03
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.02
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.96
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.73
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.51
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.46
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.42
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.34
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.24
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.19
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.17
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.1
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.1
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.0
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.83
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.52
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.4
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.04
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.76
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.33
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.2
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.78
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.77
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.45
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.43
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.37
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.04
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.98
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.67
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.66
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.4
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.26
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.81
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.54
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.5
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.48
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.28
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.98
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.24
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	91.23
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.14
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.76
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	90.65
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.45
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.42
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	90.31
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.06
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	89.82
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	89.16
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.07
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	88.98
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.82
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	88.73
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.67
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.52
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.52
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	88.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	88.39
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.17
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.13
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.94
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	87.62
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.46
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.33
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.2
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	87.12
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.1
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.07
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	86.7
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.7
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	86.56
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	85.84
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.58
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	85.26
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	83.95
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	83.85
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.74
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.5
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.28
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	82.88
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.46
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	82.34
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.16
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.33
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.06
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.63
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.5
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.4

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=6.3e-39  Score=281.21  Aligned_cols=251  Identities=45%  Similarity=0.826  Sum_probs=189.9

Q ss_pred             CcccCCCCCCccEEEECCChhhHHHHhhhhCCCcEEEEcCCCCCCCCCccccchhhhhhc-CCCCCCCccccccCCCcee
Q 045695           23 NATAAQPVSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGSPYGNPNITNLGSFGAAL-SDLSSTSPSQRFISEDGVI  101 (277)
Q Consensus        23 ~~~~~~~~~~~DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  101 (277)
                      ++.+.+.+.+|||||||||.+|+++|.+|+|..||||||+|+.....+.......+...+ .++.+...++....++.+.
T Consensus        17 ~~~~~~~~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (351)
T d1ju2a1          17 DATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGID   96 (351)
T ss_dssp             EGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEECTTSCE
T ss_pred             CCCCccccCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccccCCCcee
Confidence            344555566899999999999999999999988999999998654433333333333322 2445556667777888899


Q ss_pred             ecCCceecccccccCeeEecCChhhhhc--CCCChhhHhhHHHHhhhhcccCCCCchhHHHHHHHHHHcCCCCCCCcccc
Q 045695          102 NSRARVLGGGSCLNAGFYTRAAPYYVRE--TGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYD  179 (277)
Q Consensus       102 ~~~~~~~GG~s~~~~~~~~~~~~~~~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~  179 (277)
                      +.++++|||+|.+|++.+.|+.+.+++.  .+|+++++.++|.+.+......+....+...+.+.+.+.|+++..+....
T Consensus        97 ~~rG~~lGGsS~in~~~~~R~~~~dfd~~~~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~  176 (351)
T d1ju2a1          97 NVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLD  176 (351)
T ss_dssp             EEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCEEEECCB
T ss_pred             eeeeeecccccccceeeeccCCHHHHhhcccccChhHhCcceeecccccccccccccccccccchhhhhccccccccccc
Confidence            9999999999999999999999877765  56999999999999998888777777777777788888887654332222


Q ss_pred             CCCCeeeeeEEECCCCeeeCHHHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcE
Q 045695          180 HLYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNE  259 (277)
Q Consensus       180 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~  259 (277)
                      ....+......++..+.++....|++.+.+.|++|++++.|++|+++.+.  ..+++||++.+.++..+++.++  +++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~s~~~~~l~~a~~~nl~i~~~~~V~rv~~~~~~--g~~a~gV~~~~~~g~~~~~~v~--a~~e  252 (351)
T d1ju2a1         177 HEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAP--GLTATGVIYRDSNGTPHQAFVR--SKGE  252 (351)
T ss_dssp             CCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSS--SCBEEEEEEECTTSCEEEEEEE--EEEE
T ss_pred             cccccccccccccCCCcccccchhhccchhhhhhhhccchhhceeeeccc--cceeeEEEEEeCCCceEEEEee--cCcE
Confidence            22333333334445556666666888788899999999999999997531  1489999999866665544331  4567


Q ss_pred             EEEecCccccHHHHhccC
Q 045695          260 IIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       260 VVlAaG~~~tp~lLl~SG  277 (277)
                      ||||||+++||+|||+||
T Consensus       253 VILsAGaI~TP~LLl~SG  270 (351)
T d1ju2a1         253 VIVSAGTIGTPQLLLLSG  270 (351)
T ss_dssp             EEECCHHHHHHHHHHHTT
T ss_pred             EEEeCccccCHHHHHHcC
Confidence            999999999999999998

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=3.8e-37  Score=273.11  Aligned_cols=250  Identities=26%  Similarity=0.373  Sum_probs=176.9

Q ss_pred             ccCcccCCCCCCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCCCCc-cccchhhhhhcC---CCCCCCccccc
Q 045695           21 MHNATAAQPVSYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPN-ITNLGSFGAALS---DLSSTSPSQRF   94 (277)
Q Consensus        21 ~~~~~~~~~~~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~   94 (277)
                      +.|+.++. ..+|||||||||.+|+++|.+|+| + .+|||||+|+....... ...+..+...+.   +|.|...+ ..
T Consensus         7 ~~~p~~~~-~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~-~~   84 (385)
T d1cf3a1           7 LTDPKDVS-GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVE-LA   84 (385)
T ss_dssp             BCCGGGTT-TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCC-CT
T ss_pred             hCCccccc-CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccC-cC
Confidence            34454443 457999999999999999999999 5 89999999976543222 223333332221   34444333 34


Q ss_pred             cCCCceeecCCceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhcccC----------------
Q 045695           95 ISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAFE----------------  151 (277)
Q Consensus        95 ~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~----------------  151 (277)
                      ..++.+.+.+++++||+|.+|++.+.|+.+.+++.       .+|.|+++.|||.+.|......                
T Consensus        85 ~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g  164 (385)
T d1cf3a1          85 TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHG  164 (385)
T ss_dssp             TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSC
T ss_pred             CCCceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccC
Confidence            56778889999999999999999999999865432       5799999999999988643210                


Q ss_pred             -------------CCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-H-HhhcCCCCeEEEc
Q 045695          152 -------------PPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-L-LEYANPSGLTLLL  216 (277)
Q Consensus       152 -------------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~-l~~~~~~gv~i~~  216 (277)
                                   ....++...+.+.+.++|++...+.......++.......+....++.+.. + .+..++.|++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t  244 (385)
T d1cf3a1         165 VNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLT  244 (385)
T ss_dssp             SSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEE
T ss_pred             CcccccccccccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccC
Confidence                         112345677888888999875443222222222222222233344444443 4 4577889999999


Q ss_pred             CcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          217 HATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       217 ~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      ++.|++|++++++ ...|++||++.+.+|+.++++    +.+.||||||+++||+|||+||
T Consensus       245 ~~~V~rI~~~~~~-~~~ra~GV~~~~~~g~~~~v~----A~keVILsAGAi~SP~LLl~SG  300 (385)
T d1cf3a1         245 GQYVGKVLLSQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG  300 (385)
T ss_dssp             SCEEEEEEEECSS-SSCEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTT
T ss_pred             CceEEEEEEcCCC-ceeEEEEEEEEcCCCCEEEEE----eCCEEEEcCchhhCHHHHHhcC
Confidence            9999999998763 345899999987678888887    3466999999999999999998

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=5.1e-37  Score=272.68  Aligned_cols=240  Identities=28%  Similarity=0.386  Sum_probs=171.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCCCCCCCcc-ccchhhhhhcC---CCCCCCccccccCCCceeecC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGSPYGNPNI-TNLGSFGAALS---DLSSTSPSQRFISEDGVINSR  104 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  104 (277)
                      ..|||||||||.+|+++|.+|+| + .+|||||+|+........ ..+..+...+.   +|.|.+.|+  ..++.+.+.+
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~--~~~r~~~~~~  100 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL--INNRTNNIKA  100 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC--TTSCCCEECC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec--CCCcEeeece
Confidence            47999999999999999999999 7 799999999865433322 22333333222   455555444  5677889999


Q ss_pred             CceecccccccCeeEecCChhhhhc-------CCCChhhHhhHHHHhhhhccc---------------------------
Q 045695          105 ARVLGGGSCLNAGFYTRAAPYYVRE-------TGWDERLVNESYQWVEKVVAF---------------------------  150 (277)
Q Consensus       105 ~~~~GG~s~~~~~~~~~~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~---------------------------  150 (277)
                      ++++||+|.+|++++.|+.+.+++.       .+|.++++.|+|++.|.....                           
T Consensus       101 G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  180 (391)
T d1gpea1         101 GKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGAR  180 (391)
T ss_dssp             BCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBCC
T ss_pred             eeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCccccccc
Confidence            9999999999999999999854432       579999999999998864321                           


Q ss_pred             --CCCCchhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH-H-HhhcCCCCeEEEcCcEEEEEEEe
Q 045695          151 --EPPMRQWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD-L-LEYANPSGLTLLLHATVHKVLFR  226 (277)
Q Consensus       151 --~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~-l~~~~~~gv~i~~~~~V~~l~~~  226 (277)
                        .....++...+.+...++|++...........++....+..+.++.|.+... + .+...+.|++|++++.|++|+++
T Consensus       181 ~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~  260 (391)
T d1gpea1         181 DNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFK  260 (391)
T ss_dssp             CCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEE
T ss_pred             ccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhccceeeEEeee
Confidence              0112345667888888999864433222121122222222334556666654 3 45777889999999999999997


Q ss_pred             cCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          227 IKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       227 ~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      .+. ...|++||++.+.++...+++    +++.||||||+++||+|||+||
T Consensus       261 ~~~-~g~ra~GV~~~~~~g~~~~v~----A~keVILaAGai~SP~LLl~SG  306 (391)
T d1gpea1         261 QTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSG  306 (391)
T ss_dssp             EET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTT
T ss_pred             CCC-CCceEEeeEEecCCCeEEEEE----eCCEEEEecchhcchHHHHhcC
Confidence            531 124899999987667666777    3567999999999999999998

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=2.7e-36  Score=265.24  Aligned_cols=238  Identities=24%  Similarity=0.278  Sum_probs=163.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhh--hcCC-------CCCCCccccccCCCce
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGA--ALSD-------LSSTSPSQRFISEDGV  100 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~  100 (277)
                      +.|||||||||.+|+++|.+|+| |.+|||||+|+.............+..  ....       +.+...++....++.+
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI   80 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcccCCccc
Confidence            47999999999999999999999 999999999975432221111111111  1111       1223345556677788


Q ss_pred             eecCCceecccccccCeeEecCChhhhhc-CCC--ChhhHhhHHHHhhhhcccCCC--------CchhHHHHHHHHHHcC
Q 045695          101 INSRARVLGGGSCLNAGFYTRAAPYYVRE-TGW--DERLVNESYQWVEKVVAFEPP--------MRQWQSAVRDGLVEVG  169 (277)
Q Consensus       101 ~~~~~~~~GG~s~~~~~~~~~~~~~~~~~-~gw--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~G  169 (277)
                      .+.+++++||+|.+|++.+.|+.+.+++. .+|  .|+++.|||.++|+.+.....        ..+....+.+.+...+
T Consensus        81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g  160 (360)
T d1kdga1          81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG  160 (360)
T ss_dssp             SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred             cccceeeecchhccccccccccchhhheecccccccccchhhhhhhhhccccccceecCCCcccccchhHHHHHHHHHhh
Confidence            89999999999999999999999865544 456  568999999999987654321        1122344556666666


Q ss_pred             CCCCCCccccCCCCeeeeeE-EECCCCeeeCHHH-HHh-hcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeC---
Q 045695          170 VLPYNGFTYDHLYGTKIGGT-IFDQNGQRHTAAD-LLE-YANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDA---  243 (277)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~-~l~-~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~---  243 (277)
                      +................+.+ +.+.+|.|++... |+. +.++.|++|++++.|++|+++++     |++||++.+.   
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~-----ra~GV~~~~~~~~  235 (360)
T d1kdga1         161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLG  235 (360)
T ss_dssp             CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEEEEEESCTTSS
T ss_pred             ccCCCcccCCCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEeCC-----EEEEEEEEecccC
Confidence            54211100111111111111 1235688877765 665 66778999999999999999886     9999999863   


Q ss_pred             CCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          244 TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       244 ~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      .++..++.    ++++||||||+++||+|||+||
T Consensus       236 ~~~~~~v~----a~~eVILsAGai~SP~LLl~SG  265 (360)
T d1kdga1         236 PNGFIPVT----PKGRVILSAGAFGTSRILFQSG  265 (360)
T ss_dssp             GGGEEEEE----EEEEEEECSHHHHHHHHHHHTT
T ss_pred             cceEEEEE----ECCEEEEechhHhChHHHHhcC
Confidence            23445555    4678999999999999999998

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.96  E-value=2.7e-29  Score=220.48  Aligned_cols=236  Identities=17%  Similarity=0.163  Sum_probs=150.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCcccc-chh--hhhhcCCC----------------------C
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITN-LGS--FGAALSDL----------------------S   86 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~-~~~--~~~~~~~~----------------------~   86 (277)
                      +||||||||++|+++|++|+| |++|+|||+|..+........ ...  .......|                      .
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNID   82 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            699999999999999999999 999999999976432111000 000  00000000                      0


Q ss_pred             CCCccccccCCCceeecCCceecccccccCeeEecCChhhhhc---CCCChhhHhhHHHHhhhhcccCCCCc--------
Q 045695           87 STSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE---TGWDERLVNESYQWVEKVVAFEPPMR--------  155 (277)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~---~gw~~~~~~~~~~~~~~~~~~~~~~~--------  155 (277)
                      +....+.....+.+.+.+++++||+|.+|++.+.|+.+.+++.   ..|.++++.|||+++++.+...+...        
T Consensus        83 ~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~~~  162 (367)
T d1n4wa1          83 PYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEW  162 (367)
T ss_dssp             CCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGG
T ss_pred             cccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCCCCCCCccccCCC
Confidence            0001111223455677889999999999999999999876664   12335789999999999877654322        


Q ss_pred             -hhHHHHHHHHHHcCCCCCCCcc----------cc-CCCCee-eeeEEECCCCeeeCHH-HHHh-hcCCCCeEEEcCcEE
Q 045695          156 -QWQSAVRDGLVEVGVLPYNGFT----------YD-HLYGTK-IGGTIFDQNGQRHTAA-DLLE-YANPSGLTLLLHATV  220 (277)
Q Consensus       156 -~~~~~~~~~~~~~G~~~~~~~~----------~~-~~~~~~-~~~~~~~~~g~~~~~~-~~l~-~~~~~gv~i~~~~~V  220 (277)
                       +....+.+.....|+.......          .. ....+. .+.+.....+.+.+.. .|+. +.++.+++|+++|+|
T Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t~V  242 (367)
T d1n4wa1         163 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQV  242 (367)
T ss_dssp             GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESEEE
T ss_pred             ChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhHHHHhCCCeEEECCCEE
Confidence             2234456666777765311000          00 000011 1111112334444443 4666 445557999999999


Q ss_pred             EEEEEecCCCCCCeEEEEEEEeCCCc---eEEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          221 HKVLFRIKGKARPQAHGVVFRDATGA---KHRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       221 ~~l~~~~~~~~~~~v~gV~~~~~~g~---~~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      ++|.+++++   .++++|++.+.+++   .+++.     ++.||||||+++||+|||+|
T Consensus       243 ~~I~~~~~g---~~~v~v~~~~~~~~~~~~~~i~-----Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         243 KTIRQTKDG---GYALTVEQKDTDGKLLATKEIS-----CRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             EEEEECTTS---SEEEEEEEECTTCCEEEEEEEE-----EEEEEECSHHHHHHHHHHHH
T ss_pred             EEEEEcCCC---CEEEEEEEECCCCcceeEEEEe-----cCEEEEecchhcCHHHHHhC
Confidence            999998764   37888888875443   23444     69999999999999999998

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.96  E-value=9.2e-29  Score=217.32  Aligned_cols=235  Identities=18%  Similarity=0.175  Sum_probs=148.8

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCcc-ccchh---------hhhhcC----------CCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNI-TNLGS---------FGAALS----------DLSST   88 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~-~~~~~---------~~~~~~----------~~~~~   88 (277)
                      -..+||||||||++|+++|++|++ |++|+|||+|..+...... .....         +.....          .+.+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKS   84 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCcc
Confidence            357999999999999999999999 9999999999654221110 00000         000000          00010


Q ss_pred             Cc----cccccCCCceeecCCceecccccccCeeEecCChhhhhc---CCCChhhHhhHHHHhhhhcccCCCC-------
Q 045695           89 SP----SQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRE---TGWDERLVNESYQWVEKVVAFEPPM-------  154 (277)
Q Consensus        89 ~~----~~~~~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~---~gw~~~~~~~~~~~~~~~~~~~~~~-------  154 (277)
                      ..    .........+.+.+++++||+|.+|++++.|+.+.+++.   .++..+++.++|.++++.+...+..       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~~~~~  164 (370)
T d3coxa1          85 IDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFEST  164 (370)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             cccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCccccCCcccCC
Confidence            00    111123455677889999999999999999999876654   2233567899999999988765432       


Q ss_pred             --chhHHHHHHHHHHcCCCCCCC----------------ccccCCCCeeeeeEEECCCCeeeCHH-HHHh-hcCCCCeEE
Q 045695          155 --RQWQSAVRDGLVEVGVLPYNG----------------FTYDHLYGTKIGGTIFDQNGQRHTAA-DLLE-YANPSGLTL  214 (277)
Q Consensus       155 --~~~~~~~~~~~~~~G~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~-~~l~-~~~~~gv~i  214 (277)
                        .+..+.+.+...+.|+.+...                ..+..+.++.    ..+..+.+.+.. .|++ +.++.+++|
T Consensus       165 ~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~k~s~~~~~L~~a~~~g~~~i  240 (370)
T d3coxa1         165 EWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEV----IYGNNAGKKSLDKTYLAQAAATGKLTI  240 (370)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCS----TTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred             CCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccc----cccccccccChHHHHHHHHHhCCCcEE
Confidence              223455667777777752110                0011111111    112334455544 3775 455667999


Q ss_pred             EcCcEEEEEEEecCCCCCCeEEEEEEEeCCCce---EEEEeecCCCcEEEEecCccccHHHHhcc
Q 045695          215 LLHATVHKVLFRIKGKARPQAHGVVFRDATGAK---HRAYLKNGPKNEIIVSAGALGSPQLLMLS  276 (277)
Q Consensus       215 ~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~---~~i~~~~~~a~~VVlAaG~~~tp~lLl~S  276 (277)
                      +++++|++|++++++   .+.+.++..+..++.   +++.     ++.||||||+++||+|||+|
T Consensus       241 ~t~~~V~~I~~~~~~---~~~V~v~~~~~~~~~~~~~~~~-----A~~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         241 TTLHRVTKVAPATGS---GYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             ECSEEEEEEEECSSS---SEEEEEEEECTTSCEEEEEEEE-----EEEEEECSHHHHHHHHHHHH
T ss_pred             EecCcEEEEEEcCCC---eEEEEEEEeCCccceeeEEEEE-----CCEEEEeeCHHHhHHHHHhC
Confidence            999999999998872   133444444444432   3454     68999999999999999998

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.91  E-value=6.9e-24  Score=185.46  Aligned_cols=235  Identities=18%  Similarity=0.147  Sum_probs=128.7

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccc----------hhhhhhcC-----------CCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNL----------GSFGAALS-----------DLS   86 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~----------~~~~~~~~-----------~~~   86 (277)
                      |+.+|||||||||++|+++|.+|++ |+||||||+|+...........          ..+.....           .+.
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            4679999999999999999999999 9999999999765432221111          01111000           000


Q ss_pred             CCCc-----------------cccccCCCceeecCCceecccccccCeeEecCChhhhhcCC-CCh----hhHhhHHHHh
Q 045695           87 STSP-----------------SQRFISEDGVINSRARVLGGGSCLNAGFYTRAAPYYVRETG-WDE----RLVNESYQWV  144 (277)
Q Consensus        87 ~~~~-----------------~~~~~~~~~~~~~~~~~~GG~s~~~~~~~~~~~~~~~~~~g-w~~----~~~~~~~~~~  144 (277)
                      ....                 +..........+.....+||.+..|...+.+..+.++.... ...    ......|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence            0000                 00000011112344678999999999999998875443210 010    1112223333


Q ss_pred             hhhcccCCC-Cc--hhHHHHHHHHHHcCCCCCCCccccCCCCeeeeeEEECCCCeeeCHHH--------HHhhcCCCCeE
Q 045695          145 EKVVAFEPP-MR--QWQSAVRDGLVEVGVLPYNGFTYDHLYGTKIGGTIFDQNGQRHTAAD--------LLEYANPSGLT  213 (277)
Q Consensus       145 ~~~~~~~~~-~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~l~~~~~~gv~  213 (277)
                      +........ ..  .....+.+.+........ ..  ...   .............+....        ++..+.+.|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (379)
T d2f5va1         161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQR-DF--QQI---PLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN  234 (379)
T ss_dssp             HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSS-CC--EEC---CEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEE
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCCccccccccc-Cc--ccc---cchhccCCCCCCCcCCCCcccchhhcchHHhcCCCCE
Confidence            322211111 11  111222222222221111 00  000   000000011111111111        12234557899


Q ss_pred             EEcCcEEEEEEEecCCCCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCccccHHHHhccC
Q 045695          214 LLLHATVHKVLFRIKGKARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG  277 (277)
Q Consensus       214 i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl~SG  277 (277)
                      |++++.|++|++++++   .+++||++.|. +++.+.+.     ++.||||+|+++||+||++||
T Consensus       235 l~~~a~V~~i~~~~~~---~r~~gV~~~d~~~g~~~~i~-----a~~vilaaGa~~tp~lL~~Sg  291 (379)
T d2f5va1         235 LFPAVACERVVRNALN---SEIESLHIHDLISGDRFEIK-----ADVYVLTAGAVHNTQLLVNSG  291 (379)
T ss_dssp             EECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEEE-----EEEEEECSCHHHHHHHHHHTT
T ss_pred             EecCCEEEEEEEeCCC---CEEEEEEEEECCCCEEEEEe-----ceEEEeccCccCCHHHHhhcc
Confidence            9999999999998643   38999999984 56766775     699999999999999999997

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.85  E-value=6.9e-21  Score=162.48  Aligned_cols=189  Identities=16%  Similarity=0.135  Sum_probs=107.2

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCcee
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVL  108 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (277)
                      ..+|||||||+|++|+++|++|++ |.+|+||||++...                                         
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~g-----------------------------------------   52 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG-----------------------------------------   52 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC-----------------------------------------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC-----------------------------------------
Confidence            457999999999999999999999 99999999997643                                         


Q ss_pred             cccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCC------chhHHHHHHHHHHcCCCCCCCccccCCC
Q 045695          109 GGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPM------RQWQSAVRDGLVEVGVLPYNGFTYDHLY  182 (277)
Q Consensus       109 GG~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~G~~~~~~~~~~~~~  182 (277)
                       |.|.++.+.+...........+. .+....++...........+.      ........+++.++|++ +.....  ..
T Consensus        53 -G~s~~s~G~~~~~~~~~~~~~~~-~d~~~~~~~d~~~~~~~~~d~~lv~~~~~~~~~~i~~L~~~Gv~-~~~~~~--~~  127 (308)
T d1y0pa2          53 -GNAKLAAGGMNAAWTDQQKAKKI-TDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGAD-LTDVGM--MG  127 (308)
T ss_dssp             -TTGGGCCSCEECSSCHHHHHTTC-CCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEEEC--CT
T ss_pred             -CcceecCCCCccccchhhhhhhc-cchHHHHHHHHHhhhhhccchHHHHHHHHhhhHHHHHHHHcCCC-cccccc--cc
Confidence             33333333222221111111110 011111111111111111100      01122345677778875 221111  01


Q ss_pred             CeeeeeEEECCCCeeeC--H-HHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcE
Q 045695          183 GTKIGGTIFDQNGQRHT--A-ADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNE  259 (277)
Q Consensus       183 ~~~~~~~~~~~~g~~~~--~-~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~  259 (277)
                      .........+.......  . ..++..+.+.|++|+++++|++|+.++++    +|+||.+.+.++..+.+.     ++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G----~V~Gv~~~~~~~~~~~i~-----Ak~  198 (308)
T d1y0pa2         128 GASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADA  198 (308)
T ss_dssp             TCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSE
T ss_pred             ccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc----ccccccccccccceeEee-----cCe
Confidence            11111111122211111  1 12445566789999999999999998876    999999998666666665     699


Q ss_pred             EEEecCccccHHHH
Q 045695          260 IIVSAGALGSPQLL  273 (277)
Q Consensus       260 VVlAaG~~~tp~lL  273 (277)
                      ||||||+|....-|
T Consensus       199 VVlAtGG~~~n~~~  212 (308)
T d1y0pa2         199 VILATGGFAKNNER  212 (308)
T ss_dssp             EEECCCCCTTCHHH
T ss_pred             EEEccCcccccHHH
Confidence            99999999875444

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.83  E-value=2.5e-20  Score=160.07  Aligned_cols=190  Identities=21%  Similarity=0.172  Sum_probs=106.3

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCce
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARV  107 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (277)
                      ..+++||||||+|++|+++|++|++ |++|+||||++....                                       
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG---------------------------------------   60 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG---------------------------------------   60 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT---------------------------------------
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC---------------------------------------
Confidence            3457899999999999999999999 999999999976432                                       


Q ss_pred             ecccccccCeeEecCChhhhhcCCCChhhHhhHHHHhhhhcccCCCC------chhHHHHHHHHHHcCCCCCCCccccCC
Q 045695          108 LGGGSCLNAGFYTRAAPYYVRETGWDERLVNESYQWVEKVVAFEPPM------RQWQSAVRDGLVEVGVLPYNGFTYDHL  181 (277)
Q Consensus       108 ~GG~s~~~~~~~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~G~~~~~~~~~~~~  181 (277)
                         .|.++.+.+...........+ ..+....++...........+.      ........+++.++|++ +.....  .
T Consensus        61 ---~s~~s~Ggi~~~~~~~~~~~~-~~d~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~Gv~-~~~~~~--~  133 (322)
T d1d4ca2          61 ---NTKLAAGGMNAAETKPQAKLG-IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGAD-MTDVGR--M  133 (322)
T ss_dssp             ---TGGGCCSCEECSSCHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHTTCC-CCEEEC--C
T ss_pred             ---cccccCCcccccCchhhhhcc-cCCCHHHHHHHHHhccccccCHHHhhhhhhhhhhhhhhhhhhccc-cccccc--c
Confidence               222222222111111111100 1111112222211111111110      01122345677788875 221111  0


Q ss_pred             CCeeeeeEEECCCCeeeC--H-HHHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCc
Q 045695          182 YGTKIGGTIFDQNGQRHT--A-ADLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKN  258 (277)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~--~-~~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~  258 (277)
                      .+........+..+....  . ..+...+.+.|++|+++++|++|+.++++    +|+||.+.+.++....+.     ++
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G----~V~Gv~~~~~~~~~~~i~-----Ak  204 (322)
T d1d4ca2         134 GGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVIK-----AD  204 (322)
T ss_dssp             TTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS----CCCEEEEEETTTEEEEEE-----CS
T ss_pred             cccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc----cccceEEEeecccEEEEe-----CC
Confidence            111111111122221111  1 12445566679999999999999998775    999999998666665665     79


Q ss_pred             EEEEecCccccHHHH
Q 045695          259 EIIVSAGALGSPQLL  273 (277)
Q Consensus       259 ~VVlAaG~~~tp~lL  273 (277)
                      .||||||+|....-|
T Consensus       205 ~VIlAtGG~~~n~~~  219 (322)
T d1d4ca2         205 AVVIAAGGFAKNNER  219 (322)
T ss_dssp             EEEECCCCCTTCHHH
T ss_pred             eEEEcCCCcccCHHH
Confidence            999999999875544

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.82  E-value=8.5e-20  Score=156.49  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=107.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCccccchhhhhhcCCCCCCCccccccCCCceeecCCcee
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPNITNLGSFGAALSDLSSTSPSQRFISEDGVINSRARVL  108 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (277)
                      .+++||||||+|++|+++|++|++ |.+|+||||++....                                        
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG----------------------------------------   56 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG----------------------------------------   56 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT----------------------------------------
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC----------------------------------------
Confidence            458999999999999999999999 999999999976532                                        


Q ss_pred             cccccccCeeEe-cCChhhhhcCCCChhhHhhHHHHhhhhcccCCCCc------hhHHHHHHHHHHcCCCCCCCccccCC
Q 045695          109 GGGSCLNAGFYT-RAAPYYVRETGWDERLVNESYQWVEKVVAFEPPMR------QWQSAVRDGLVEVGVLPYNGFTYDHL  181 (277)
Q Consensus       109 GG~s~~~~~~~~-~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~~~~~~~~  181 (277)
                        .|.+..+.+. ...+.. ...+. .+....++....+......+..      .......+++.++|++ ++.......
T Consensus        57 --~S~~a~Ggi~a~~~~~~-~~~g~-~d~~~~~~~d~~~~~~~~~d~~lv~~~~~~a~~~i~~l~~~Gv~-~~~~~~~gg  131 (317)
T d1qo8a2          57 --NSMISAGGMNAVGTKQQ-TAHGV-EDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGAN-LDDLKRSGG  131 (317)
T ss_dssp             --TGGGCCSCEECSSCHHH-HHTTC-CCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCC-CCEEECCTT
T ss_pred             --chhhcCCCcccccchhh-hhccc-CCcHHHHHHHHHHhhccccchhHHHHHHhhhhhhhhhHHHhhhc-ccccccccC
Confidence              2222222111 111111 11110 0111222222221111111100      0122344677778875 222111110


Q ss_pred             CCeeeeeEEECCCCeeeC--HH-HHHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCc
Q 045695          182 YGTKIGGTIFDQNGQRHT--AA-DLLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKN  258 (277)
Q Consensus       182 ~~~~~~~~~~~~~g~~~~--~~-~~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~  258 (277)
                      .....  ...+..+....  .. .+...+++.|++++++++|++|+.++++    +|+||.+.+.++..+.+.     +|
T Consensus       132 ~~~~r--~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g----~V~Gv~~~~~~~~~~~i~-----Ak  200 (317)
T d1qo8a2         132 ARVDR--THRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----AK  200 (317)
T ss_dssp             CSSCC--EEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----EE
T ss_pred             ccccc--ccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc----cceeeEeecccceEEEEe-----cc
Confidence            01111  11122222111  11 2445677789999999999999997775    999999998777666665     69


Q ss_pred             EEEEecCccccHHHHh
Q 045695          259 EIIVSAGALGSPQLLM  274 (277)
Q Consensus       259 ~VVlAaG~~~tp~lLl  274 (277)
                      .||||||+|....-|+
T Consensus       201 ~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         201 SVVLATGGYGMNKEMI  216 (317)
T ss_dssp             EEEECCCCCTTCHHHH
T ss_pred             ceEEeccccccCHHHH
Confidence            9999999998655443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=8.3e-17  Score=137.32  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             hhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          205 EYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       205 ~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ...++.+++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.|||||||++.
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~d~g-----~v~Gvv~~~~~~g~~~~~~-----AkaVILATGG~g~  198 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR  198 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCGG
T ss_pred             HHHccCcceeEeeeEeeeeEecCC-----cceeEEEEEcCCCcEEEEE-----CCEEEEcCCCccc
Confidence            366778999999999999999887     999999987 467777765     6899999999863

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.72  E-value=1.5e-17  Score=137.17  Aligned_cols=56  Identities=21%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHH
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL  272 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~l  272 (277)
                      ++..+++.|++|+++++|++|..+++     ++.+|...  +++  ++.     ++.||+|+|+...|++
T Consensus       116 L~~~~~~~gv~i~~~~~v~~i~~~~~-----~~~~v~~~--~g~--~i~-----a~~vI~AtGg~S~p~~  171 (251)
T d2i0za1         116 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGE--VLE-----TNHVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCC--EEE-----CSCEEECCCCSSSGGG
T ss_pred             HHHHHHHcCCcccCCcEEEEEEEECC-----EEEEEEeC--CCC--eEe-----cCeEEEccCCcccccc
Confidence            45566778999999999999999887     88887765  454  344     6999999999988863

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.72  E-value=3.1e-17  Score=137.50  Aligned_cols=36  Identities=25%  Similarity=0.536  Sum_probs=33.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +.|||||||+|++|+++|++|++ |.+|+||||....
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~   38 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPP   38 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            57999999999999999999999 9999999998654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.70  E-value=2.5e-16  Score=135.23  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      +...+++.|++|+++++|++|+.+++     +|+|+.+.+ .+|+.+.+.     ++.||||||++.
T Consensus       164 l~~~~~~~gv~i~~~~~~~~li~~~~-----~v~g~~~~~~~~g~~~~i~-----Ak~VvlATGG~~  220 (336)
T d2bs2a2         164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCG
T ss_pred             HHHHHHhccccccceeeeeecccccc-----cccceeEEeccCCcEEEEe-----cCeEEEeccccc
Confidence            44566778999999999999999987     999999987 467877776     699999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.1e-15  Score=129.64  Aligned_cols=61  Identities=8%  Similarity=0.113  Sum_probs=46.7

Q ss_pred             HhhcCCCCeEEEcCcEEEEEEEecCC--CCCCeEEEEEEEeC-CCceEEEEeecCCCcEEEEecCcccc
Q 045695          204 LEYANPSGLTLLLHATVHKVLFRIKG--KARPQAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       204 l~~~~~~gv~i~~~~~V~~l~~~~~~--~~~~~v~gV~~~~~-~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      ....++.+++++.++.+++|+.+++.  +...+|+||.+.+. +++.+.+.     ++.||||+|+++.
T Consensus       145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~-----ak~VilAtGG~~~  208 (305)
T d1chua2         145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCH-----AKAVVLATGGASK  208 (305)
T ss_dssp             HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEe-----ecceEEeeecccc
Confidence            34567789999999999999998652  12348999999874 45555554     7999999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.65  E-value=1.8e-17  Score=137.20  Aligned_cols=38  Identities=37%  Similarity=0.510  Sum_probs=34.7

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |.+.+||||||+|++|+++|+.|++ |++|+||||++..
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            3457899999999999999999999 9999999999765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.65  E-value=4.5e-16  Score=131.86  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=53.5

Q ss_pred             eeEEECCCCeeeCHHH---HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEe
Q 045695          187 GGTIFDQNGQRHTAAD---LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVS  263 (277)
Q Consensus       187 ~~~~~~~~g~~~~~~~---~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlA  263 (277)
                      ++.+.+.++.......   +...+++.|++|+++++|++|..+++     ++++|++.  +|   ++.     ++.||+|
T Consensus       135 ~~~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~-----~v~~V~T~--~g---~i~-----a~~VV~a  199 (305)
T d1pj5a2         135 GGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGG-----RVTGVQTA--DG---VIP-----ADIVVSC  199 (305)
T ss_dssp             EEEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TE---EEE-----CSEEEEC
T ss_pred             cceecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEeCC-----EEEEEecc--ce---eEE-----CCEEEEe
Confidence            3444455555433322   44567778999999999999999987     89998753  34   354     6999999


Q ss_pred             cCccccHHHHhcc
Q 045695          264 AGALGSPQLLMLS  276 (277)
Q Consensus       264 aG~~~tp~lLl~S  276 (277)
                      ||+ .+++|+...
T Consensus       200 aG~-~s~~l~~~~  211 (305)
T d1pj5a2         200 AGF-WGAKIGAMI  211 (305)
T ss_dssp             CGG-GHHHHHHTT
T ss_pred             cch-hHHHHHHHc
Confidence            998 588887654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.63  E-value=3.2e-16  Score=130.79  Aligned_cols=38  Identities=32%  Similarity=0.528  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |+.+|||||||||++|+++|++|++ |.+|+||||+...
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~   39 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG   39 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4567999999999999999999999 9999999998653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.8e-14  Score=123.45  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCcccc
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS  269 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~t  269 (277)
                      +...+++.+++++.++.+.+++.+.++    ++.++...+ .+++.+.+.     ++.||||+|++..
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~~~~~----~~~g~~~~~~~~g~~~~~~-----a~~vIlAtGG~~~  207 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----ESCEEECCCCCGG
T ss_pred             HHHHHHhcCCeEEEEEEEEEeeeeccc----cceeeeeEEccCCcEEEEe-----ccEEEEcCCCccc
Confidence            344556689999999999999997664    888877766 457776665     6899999999864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.55  E-value=3.8e-14  Score=122.27  Aligned_cols=54  Identities=9%  Similarity=-0.007  Sum_probs=40.5

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecCccc
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG  268 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG~~~  268 (277)
                      ...+..++..+.+++++....  ...++.++.+.+ ++|+.+.+.     ++.|||||||++
T Consensus       163 ~~~~~~i~~~~~~~~l~~~~~--~~~~v~~~~~~~~~~G~~~~i~-----Ak~VILATGG~~  217 (356)
T d1jnra2         163 AVGEENIYERVFIFELLKDNN--DPNAVAGAVGFSVREPKFYVFK-----AKAVILATGGAT  217 (356)
T ss_dssp             HHCGGGEECSEEEEEEEECTT--CTTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBC
T ss_pred             hhcceEEEEEEEEEEeeeecc--cccceeeeEEEEeecCcEEEee-----CCEEEEcCCCcc
Confidence            335677888999999887543  123788888876 457777776     699999999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.29  E-value=6e-12  Score=104.77  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=41.1

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecCccccHHHHh
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM  274 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG~~~tp~lLl  274 (277)
                      +++.|++|+++++|++|..+++     ++. |.+.+ +++..++.     ++.||+|++...+++||-
T Consensus       229 ~~~~g~~i~~~~~V~~I~~~~~-----~~~-v~~~~-~~~~~~~~-----ad~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         229 AASLGDAAHVGARVEGLAREDG-----GWR-LIIEE-HGRRAELS-----VAQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHHGGGEESSEEEEEEECC-------CCE-EEEEE-TTEEEEEE-----CSEEEECSCHHHHHHHHT
T ss_pred             HHHhhcccccCCEEEEEEEeCC-----eEE-EEEEc-CCeEEEEE-----CCEEEECCCHHHHHHhcc
Confidence            4445889999999999998876     433 34444 45556665     699999999988888874

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=2.1e-11  Score=97.83  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=30.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|||||||+|++|+.||..+|+ |.||+|||+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5999999999999999999999 9999999986

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.17  E-value=3.1e-11  Score=101.53  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=35.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +.++||||||+|++|+++|+.|.+ |.+|+|+||++...
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iG   43 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVG   43 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcc
Confidence            468999999999999999999999 99999999997653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1e-11  Score=100.51  Aligned_cols=40  Identities=30%  Similarity=0.467  Sum_probs=37.0

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      |+.+|||||||||++|+++|+.|++ |.+|+||||.+...+
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            6779999999999999999999999 999999999987654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=2.8e-09  Score=88.30  Aligned_cols=36  Identities=33%  Similarity=0.573  Sum_probs=33.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~VlvlE~g~~~   66 (277)
                      .++||||||+|++|+++|+.|++  |++|+|||+.+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            57999999999999999999975  9999999999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.89  E-value=1.4e-08  Score=86.18  Aligned_cols=35  Identities=43%  Similarity=0.603  Sum_probs=31.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~~~   68 (277)
                      .|+|||||++|+++|+.|++ |  .+|+|+||.....+
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG   43 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG   43 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCC
Confidence            69999999999999999987 5  59999999987654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.87  E-value=9e-09  Score=83.86  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .-.|+|||+|++|+++|..|++ |++|+||||.+.+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   39 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   39 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            3469999999999999999999 9999999998653

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.84  E-value=1e-09  Score=95.19  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.7

Q ss_pred             CCccEEEECCChhhHHHHhhhh------C-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLS------Q-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La------~-g~~VlvlE~g~~~~   67 (277)
                      ++|||||||+|++|++||+.||      + |++|+||||+..+.
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            4799999999999999999997      4 99999999998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=1.1e-09  Score=87.46  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ++|||||||||++|++||+.|++ |++|+|||+.....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            58999999999999999999999 99999999986543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.9e-09  Score=86.89  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      -+|||||||||++|++||+.|++ |+||+|||++....
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            37999999999999999999999 99999999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.78  E-value=1.3e-09  Score=90.59  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=32.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +++||+|||+|++|+++|..|++ |++|+||||.+.
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46799999999999999999999 999999999853

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.76  E-value=2.3e-09  Score=85.39  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=34.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      .+|||||||+|++|+.+|+.|++ |.||+|||+.....
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            57999999999999999999999 99999999986653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.1e-09  Score=87.90  Aligned_cols=38  Identities=32%  Similarity=0.382  Sum_probs=34.5

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      |+.+|||+|||+|++|+.||..|++ |.||+|||+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4568999999999999999999999 9999999987553

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.7e-09  Score=84.93  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+|||||||+|++|+.+|..|++ |.+|+|||++..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~   36 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL   36 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCc
Confidence            36999999999999999999999 999999999743

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.7e-08  Score=71.18  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            59999999999999999999 9999999999654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-09  Score=88.50  Aligned_cols=40  Identities=33%  Similarity=0.352  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+.+|||||||++||+||+.|++ |++|+|||+.+...+
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            3456789999999999999999999 999999999887654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=4.2e-09  Score=88.21  Aligned_cols=36  Identities=42%  Similarity=0.684  Sum_probs=33.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      |||||||||++||++|+.|++ |.+|+|+|+.+...+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            799999999999999999999 999999999877654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.70  E-value=3.4e-09  Score=85.16  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +.+|||||||+|++|+++|..|++ |++|+|||+....
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            358999999999999999999999 9999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.68  E-value=8.4e-08  Score=68.86  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+=+|..|++ |.+|.|+|+....
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            469999999999999999999 9999999999664

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.65  E-value=5e-09  Score=83.37  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+||+||||+|++|+++|..+++ |.+|+|||++..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            47999999999999999999999 999999999865

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=5.9e-09  Score=83.11  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++.+||+||||+|++|+.+|..+++ |.+|+|||++..
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~   39 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL   39 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3568999999999999999999999 999999999853

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=8.2e-09  Score=79.70  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|||||||||++|+.+|..|++ |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3899999999999999999999 9999999974

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.63  E-value=1.8e-07  Score=67.14  Aligned_cols=34  Identities=12%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+=.|..|++ |.+|.++|+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            479999999999999999999 9999999998653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.62  E-value=1.3e-08  Score=82.42  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             CCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           29 PVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        29 ~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +..+.+|||||+|++|+++|++|++ |.+|+||||.....
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~   42 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            3456689999999999999999999 99999999986543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.6e-09  Score=87.51  Aligned_cols=35  Identities=31%  Similarity=0.545  Sum_probs=32.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ||||||||++|+++|+.|++ |++|+|||+.+...+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc
Confidence            89999999999999999999 999999999876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.61  E-value=8e-08  Score=68.51  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+.+..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            69999999999999999999 9999999999664

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=2.1e-07  Score=66.98  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+=+|..|++ |.+|.|+|+.+..
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            79999999999999999999 9999999998664

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.60  E-value=1e-08  Score=82.89  Aligned_cols=36  Identities=31%  Similarity=0.453  Sum_probs=32.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~~   68 (277)
                      .||+|||||++|+++|+.|++ |. +|+||||.+...+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCc
Confidence            389999999999999999999 95 7999999876543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1e-08  Score=81.57  Aligned_cols=34  Identities=32%  Similarity=0.594  Sum_probs=32.1

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .||+||||+|++|+.+|..|++ |.+|+|||++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            6999999999999999999999 999999999754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.56  E-value=2.9e-07  Score=65.65  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            379999999999999999999 9999999999764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.56  E-value=1.9e-07  Score=67.50  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|..|+=+|..+++ |.+|.|+|+++..
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            379999999999999999999 9999999999654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=5.5e-07  Score=65.76  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=32.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .-.++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3479999999999999999999 9999999999764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.55  E-value=1.1e-07  Score=68.62  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=31.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+=+|..|++ |.+|.|+|+++..
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            69999999999999999999 9999999999764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.53  E-value=2.7e-08  Score=82.04  Aligned_cols=35  Identities=29%  Similarity=0.422  Sum_probs=32.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .|||||||++|+++|++|++ |++|+|||+++...+
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            59999999999999999999 999999999877654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.52  E-value=2.6e-08  Score=83.41  Aligned_cols=38  Identities=32%  Similarity=0.436  Sum_probs=34.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ...+|+|||||++|+++|+.|++ |++|+|||+.+...+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG   67 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   67 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            34589999999999999999999 999999999876543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.51  E-value=2.4e-08  Score=81.68  Aligned_cols=33  Identities=42%  Similarity=0.718  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ||+||||||++|+.+|.+|++ |+||+|||++..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~   35 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL   35 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            899999999999999999999 999999998743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.48  E-value=6.5e-07  Score=63.81  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=31.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            69999999999999999999 9999999999654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=7.7e-08  Score=74.02  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      .....|+|||||++|+.||+.|++ |++|+|+|+.+...+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG   80 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCc
Confidence            346799999999999999999999 999999999987653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.4e-08  Score=76.76  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ...||+|||+|++|+.+|+.|++ |++|+|||+....
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~   40 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG   40 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccc
Confidence            46799999999999999999999 9999999987653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.42  E-value=8.9e-08  Score=81.03  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=33.8

Q ss_pred             CCccEEEECCChhhHHHHhhhh-----C-CCcEEEEcCCCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLS-----Q-NASVLLLERGGSPYG   68 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La-----~-g~~VlvlE~g~~~~~   68 (277)
                      ..|||+|||+|++|+++|..|+     + |++|+||||.+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~   49 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY   49 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence            4699999999999999999996     6 999999999876544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.8e-07  Score=64.17  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+=+|..|++ |.+|.|+|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            79999999999999999999 9999999999654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.38  E-value=1.3e-07  Score=77.28  Aligned_cols=40  Identities=33%  Similarity=0.329  Sum_probs=35.6

Q ss_pred             CCCCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           28 QPVSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        28 ~~~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      ..+.+||+||||+|++|+.+|..|++ |.+|+|||+.+...
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            34568999999999999999999999 99999999987643

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.38  E-value=6.7e-08  Score=77.79  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=32.2

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      .+||+||||+|++|+++|..+++ |. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            58999999999999999999999 75 69999987654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.35  E-value=1.2e-07  Score=79.68  Aligned_cols=36  Identities=19%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ..|+|||||++|+++|+.|++ |.+|+|+|+.+...+
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            369999999999999999999 999999999987764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.33  E-value=1.3e-07  Score=75.56  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      +.||+||||+|++|+++|..|++ |. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999 75 6999998644

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.33  E-value=1.4e-07  Score=76.94  Aligned_cols=35  Identities=34%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      .||+|||+|++|+++|+.|++ |. +|+|+||.+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            599999999999999999999 95 999999987643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=1.2e-07  Score=73.76  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=32.9

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..+||+|||||++|+.+|..|++ |++|+|+|+....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            36899999999999999999999 9999999987654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=4.2e-06  Score=59.91  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .++|||+|+.|+=.|..|++ |.+|.||++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            69999999999999999999 9999999975

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.26  E-value=4.1e-06  Score=59.46  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=28.4

Q ss_pred             ccEEEECCChhhHHHHhhh---hC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATL---SQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~L---a~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|+.|+=+|..|   .. |.+|.|+|+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            3699999999999999754   45 7899999998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.1e-06  Score=60.27  Aligned_cols=33  Identities=33%  Similarity=0.446  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhh----C-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLS----Q-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La----~-g~~VlvlE~g~~~   66 (277)
                      .++|||+|+.|+-+|..|+    + |.+|.++|+++..
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            7999999999999998885    4 8999999998664

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=4.1e-07  Score=76.07  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=34.3

Q ss_pred             CCCccEEEECCChhhHHHHhhhh--C-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLS--Q-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La--~-g~~VlvlE~g~~~~~   68 (277)
                      ..++||+|||+|++|+++|+.|+  + |++|+|+|+......
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            34789999999999999999998  4 899999999877643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.19  E-value=4.4e-07  Score=70.25  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSPY   67 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~~   67 (277)
                      -|+|||||++|+.+|+.|++ |+ +|+|+||++...
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            59999999999999999999 98 599999997764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.17  E-value=6.6e-07  Score=71.63  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYG   68 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~   68 (277)
                      ....+|+|||+|++|+++|..|++ |++|+|+|+.....+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence            356799999999999999999999 999999999987643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.15  E-value=8.6e-06  Score=63.06  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~   66 (277)
                      -|+|||+|.+|+.+|..|.+ +  .+|+|+||+...
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            38999999999999999988 4  589999998654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.5e-07  Score=70.38  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=31.5

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP   66 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~   66 (277)
                      +.++++||||+|++|+.+|..|.+ +  .+|++|++.+..
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            357899999999999999999987 6  579999887553

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=7.9e-07  Score=70.87  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-------CcEEEEcCCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-------ASVLLLERGGSPYG   68 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-------~~VlvlE~g~~~~~   68 (277)
                      +.|.|||||++|++||+.|++ |       .+|.|+||.+...+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCC
Confidence            689999999999999999988 7       48999999987654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.03  E-value=1.6e-05  Score=56.33  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC----CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ----NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~----g~~VlvlE~g~~~   66 (277)
                      -.++|||||+.|+-+|..|++    +.+|.|+|+++..
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            379999999999999976654    4679999998653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=9.3e-05  Score=52.89  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             CCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEe-CCCceEEEEeecCCCcEEEEecC
Q 045695          208 NPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       208 ~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      ...+++++++++|.+|.-+++     ++++|++++ .+++..++.     .+.|.++-|
T Consensus        77 ~~~~I~v~~~~~v~~i~G~~~-----~v~~v~l~~~~tge~~~l~-----vdgvFv~IG  125 (126)
T d1fl2a2          77 SLKNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIG  125 (126)
T ss_dssp             TCTTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSC
T ss_pred             cccceeEEcCcceEEEEcccc-----ceeeEEEEECCCCCEEEEE-----CCEEEEEeC
Confidence            336899999999999987766     899999998 357777776     588888766

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=2.3e-06  Score=67.96  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=30.4

Q ss_pred             cEEEECCChhhHHHHhhhhC---CCcEEEEcCCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ---NASVLLLERGGSPY   67 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~---g~~VlvlE~g~~~~   67 (277)
                      .|+|||||++|++||..|++   |++|+|+|+.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            69999999999999999865   68999999998764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=0.00025  Score=50.58  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +|+|||+|..++=.|..|++ ..+|.+|-|++.
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            89999999999999999999 999999998855

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=6.4e-06  Score=65.64  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=28.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C---CcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N---ASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g---~~VlvlE~g~~   65 (277)
                      .+|||||+|++|++||..+++ |   ++|+|+|++..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            479999999999999998876 5   67999999744

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.70  E-value=1.6e-06  Score=69.02  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|||+|++|+++|+.|++ |.+|+|+|+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~   33 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVK   33 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeee
Confidence            38999999999999999999 99888888753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.51  E-value=2.6e-05  Score=55.54  Aligned_cols=33  Identities=42%  Similarity=0.619  Sum_probs=31.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      +++|||||+.|+=+|..|++ |.+|.|+|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            79999999999999999999 9999999999764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.46  E-value=3.9e-05  Score=54.69  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+.+..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            379999999999999999999 9999999999765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.42  E-value=4.7e-05  Score=54.10  Aligned_cols=35  Identities=34%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      -.++|||+|+.|+=+|..|++ |.+|.|+|+++...
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            479999999999999999999 99999999998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.34  E-value=0.0045  Score=43.96  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -||+|||+|.+.+=.|..|++ -.+|.||-|++.
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            389999999999999999999 899999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.24  E-value=9.7e-05  Score=55.40  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~~   66 (277)
                      .|||||+|.+|+.+|..|.+ +  .+|+|||+.+..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            58999999999999999998 6  589999998653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0017  Score=47.80  Aligned_cols=46  Identities=13%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             HhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecC
Q 045695          204 LEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       204 l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      ....++.++++++++.|.++.  ++        |+.+.. +|+...+.     ++.||+|+|
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~--~~--------gv~~~~-~g~e~~i~-----aD~Vv~A~G  160 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKID--DD--------GLHVVI-NGETQVLA-----VDNVVICAG  160 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEE--TT--------EEEEEE-TTEEEEEC-----CSEEEECCC
T ss_pred             HHHHhhCCeEEEeeeEEEEEc--CC--------CCEEec-CCeEEEEE-----CCEEEECCC
Confidence            344566799999999999874  54        455554 56666664     799999998

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.17  E-value=0.00019  Score=53.37  Aligned_cols=33  Identities=33%  Similarity=0.594  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhCCCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQNASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~~   66 (277)
                      -|+|||+|++|+-+|..|+++.+|.|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQTYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHcCCCEEEEeccccc
Confidence            489999999999999999887799999998654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=0.0013  Score=48.37  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      -.|+|||||.+|+=+|..|.+ |. +|.+++|.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            379999999999999999888 85 588988764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.10  E-value=0.0001  Score=55.72  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ||+|||||++|+-+|..|++ |.+|.|+++.+..
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            79999999999999999999 9998888877654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.00  E-value=0.00012  Score=55.59  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ++..|+|||+|++|+-+|..|.+ |.+|.|+++++.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            34569999999999999999999 988777776644

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.83  E-value=0.00043  Score=51.79  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|+|||+|..|..+|..|++ |++|+|++|...
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            58999999999999999999 999999999743

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.00035  Score=60.97  Aligned_cols=42  Identities=31%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCCCCCCc
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSPYGNPN   71 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~~~~~~   71 (277)
                      +.+|||||+|.|..=+.+|..|++ |.|||-|||....++.+.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccc
Confidence            568999999999999999999999 999999999988876443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00078  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .|+|+|.|.+|+++|..|.+ |.+|.+.|.....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            58999999999999999999 9999999987553

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0012  Score=48.83  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=29.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|.|||+|..|...|..|++ |++|.++.|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            48999999999999999999 999999999865

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.36  E-value=0.0011  Score=49.81  Aligned_cols=31  Identities=32%  Similarity=0.490  Sum_probs=29.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|..|+..|..|++ |++|.+++|.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999999999999999 99999999974

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.04  E-value=0.0016  Score=46.38  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|+|+|.|..|...|..|.+ |.+|++||+.+.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            48999999999999999998 999999999754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.76  E-value=0.0034  Score=45.90  Aligned_cols=35  Identities=14%  Similarity=0.032  Sum_probs=30.5

Q ss_pred             CccEEEE--CCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIII--GGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviII--GsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .-.++||  |+|..|+-+|..|++ |.+|.|||+.+..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4466666  999999999999999 9999999998654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.75  E-value=0.0025  Score=45.31  Aligned_cols=32  Identities=22%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|||||.|-.|..+|..|.+ |++|+++|+.+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            48999999999999999999 999999999743

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.33  E-value=0.0064  Score=45.56  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      ...|+|||+|.+|+.||..+.. |.+|.++|....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            4589999999999999999888 999999998854

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0062  Score=46.26  Aligned_cols=32  Identities=25%  Similarity=0.508  Sum_probs=29.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|.|||+|..|...|..++. |++|+++|+.+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            58999999999999999999 999999998854

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.20  E-value=0.0062  Score=44.97  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ....|+|||+|.+|+.|+..+.. |.+|.++|...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            35689999999999999999999 99999999873

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.78  E-value=0.0098  Score=45.41  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.|||.|..|++.|..||+ |++|+.+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            7899999999999999999 99999999863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.77  E-value=0.008  Score=45.36  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|.|||+|..|...|..++. |++|.++|+...
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            48999999999999999999 999999999743

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.51  E-value=0.015  Score=39.48  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=28.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-+|+|||+|.+|+=.|..|++ ..+|+++-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4589999999999999999999 87877666554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.0095  Score=43.15  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLER   62 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~   62 (277)
                      --++|||+|..|+.-|..|.+ |.+|+|+..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            369999999999999999999 999999943

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.43  E-value=0.012  Score=44.51  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+.|||+|.-|.+.|..|++ |++|.+..|..
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            69999999999999999999 99999998763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.37  E-value=0.016  Score=43.02  Aligned_cols=30  Identities=23%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             EEEE-CCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIII-GGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viII-GsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +.|| |+|..|.+.|..|++ |++|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7888 779999999999999 99999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.12  E-value=0.016  Score=43.33  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .|.|||+|.-|.+.|..|++ |.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            58899999999999999999 9999999764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.02  Score=42.08  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|+|+|+|..|+.++..+.. |.+|+++++.+.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            59999999999997766555 999999998754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.98  E-value=0.016  Score=39.68  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=28.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      --|+|||+|..|..-|..|.+ |.+|+|+...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            479999999999999999999 9999998654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.67  E-value=0.03  Score=40.29  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|.||| .|..|.+.|..|.+ |++|.+.++...
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            699999 79999999999999 999999998643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.023  Score=42.00  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .-+|+|+|+|.++-++++.|.+ |.+|.|+-|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3479999999999999999999 99999998863

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.40  E-value=0.029  Score=40.35  Aligned_cols=35  Identities=14%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      +....+.|||+|..|.++|+.|+. +  .+++++|+..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            345579999999999999999999 7  4899999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.26  E-value=0.03  Score=40.89  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      +-|||.|..|.+.|..|.+ |++|.+.+|..
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            7899999999999999999 99999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.81  E-value=0.035  Score=40.68  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=27.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|+|+|+|..|+.++..+.. |.+|+++|+.+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            68999999999998877666 999999998743

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.65  E-value=0.047  Score=41.02  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=27.4

Q ss_pred             cEEEECCChhhHHHHhhhhCCCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQNASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g~   64 (277)
                      -+.|||.|..|++.|..|++|.+|+.+|-..
T Consensus         2 kI~ViGlG~vGl~~a~~~a~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHHCCCcEEEEECCH
Confidence            3789999999999998887799999999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.54  E-value=0.057  Score=39.86  Aligned_cols=31  Identities=19%  Similarity=0.189  Sum_probs=26.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .|+|+|+|..|+.++..+.. |. +|+++++.+
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            69999999999998888777 86 799999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.044  Score=39.44  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -+||+|.|..|..++..|.+ |.+|+|||..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            49999999999999999999 99999999874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.046  Score=41.65  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=34.6

Q ss_pred             HHhhcCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEe
Q 045695          203 LLEYANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVS  263 (277)
Q Consensus       203 ~l~~~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlA  263 (277)
                      +.+.+++.|++|+++++|++|..++++   .+|++|..   +|+  ++.     ++.||..
T Consensus       242 l~~~~~~~G~~i~~~~~V~~I~~~~~~---~~v~~v~~---~g~--~~~-----ad~VI~~  289 (297)
T d2bcgg1         242 FARLSAIYGGTYMLDTPIDEVLYKKDT---GKFEGVKT---KLG--TFK-----APLVIAD  289 (297)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTT---TEEEEEEE---TTE--EEE-----CSCEEEC
T ss_pred             HHHHHHhcCCEEEeCCEeeEEEEECCC---CEEEEEEc---CCE--EEE-----CCEEEEC
Confidence            555667789999999999999987543   28888753   454  454     5776653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.28  E-value=0.07  Score=38.59  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             CCCccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           30 VSYYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        30 ~~~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .....+.|||+|..|.++|+.|+. +. +++|++...
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            446789999999999999999988 74 899998764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.20  E-value=0.0045  Score=48.36  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      ..++|||+|..|+-+|..|++ |.+|.|+++.+..
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            478999999999999999999 9999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.051  Score=39.86  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .|+|+|+|+.|+.++..|.. |. +|+++|+.+.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            59999999999998888776 87 7999998743

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.24  E-value=0.089  Score=38.50  Aligned_cols=33  Identities=15%  Similarity=0.211  Sum_probs=28.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      ...|+|+|+|.++-++++.|.+ |. +|.|+-|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3479999999999999999999 85 799998863

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.23  E-value=0.12  Score=37.51  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ...|.|||+|..|.++|+.|.. ++  +++|++...
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3479999999999999999998 64  799998763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.14  E-value=0.14  Score=37.28  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             CCccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ....|.|||+|..|.++|+.|+. |.  +++|+|+..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35689999999999999999998 74  799999863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.91  E-value=0.077  Score=38.54  Aligned_cols=31  Identities=16%  Similarity=0.040  Sum_probs=26.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|+|+|+|..|+.++.-+.. |.+|+++++.+
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            59999999999997766655 99999998874

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.76  E-value=0.094  Score=37.54  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=26.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .|.|||+|..|.++|+.|+. |.  ++++++...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            47899999999999999998 73  799998763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=90.65  E-value=0.11  Score=36.98  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~   64 (277)
                      .+.|||+|..|.++|+.|+. +. ++++++...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            47899999999999999998 74 899998754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.081  Score=41.27  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=30.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ...|+|||.|..|+.+|..|++ |. ++.|+|-....
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence            4589999999999999999999 96 78999877544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.42  E-value=0.12  Score=38.04  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=29.7

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+|=|||-|..|...|.+|.+ |++|.+.+|.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            478899999999999999999 99999999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.31  E-value=0.1  Score=37.40  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      ...|.|||+|..|.++|+.|+. +.  +++|+|...
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4469999999999999999998 74  799999753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.06  E-value=0.13  Score=37.86  Aligned_cols=31  Identities=26%  Similarity=0.449  Sum_probs=27.9

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      .-.|+|+|+|.++-++++.|.+ | +|.|+-|.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            4479999999999999999988 7 99999886

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=89.82  E-value=0.14  Score=40.83  Aligned_cols=48  Identities=15%  Similarity=0.117  Sum_probs=35.0

Q ss_pred             cCCCCeEEEcCcEEEEEEEecCCCCCCeEEEEEEEeCCCceEEEEeecCCCcEEEEecC
Q 045695          207 ANPSGLTLLLHATVHKVLFRIKGKARPQAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG  265 (277)
Q Consensus       207 ~~~~gv~i~~~~~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~i~~~~~~a~~VVlAaG  265 (277)
                      +++.|++|+++++|++|..+++     ++. |.+.+.++..+++.     ++.||+|++
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~-----~v~-v~~~~~~~~~~~~~-----aD~VI~A~p  292 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQ-----KVT-VVYETLSKETPSVT-----ADYVIVCTT  292 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSS-----CEE-EEEECSSSCCCEEE-----ESEEEECSC
T ss_pred             HHhcCCccccCceEEEEEEeCC-----eEE-EEEEecCCCeEEEE-----eeEEEecCC
Confidence            4567899999999999999887     444 34444345545555     599999985

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=89.16  E-value=0.14  Score=36.43  Aligned_cols=31  Identities=26%  Similarity=0.441  Sum_probs=26.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .|.|||+|..|.++|+.|+. ++  +++|++...
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            48899999999999999987 64  799999764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.07  E-value=0.099  Score=38.63  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .|+|+|+|..|+.++..+.. |. +|+++++.+.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            68999999999987777666 96 7999998643

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=88.98  E-value=0.16  Score=36.10  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=26.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~~   65 (277)
                      .+.|||+|..|.++|+.|+. ++  +++|+|....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            48899999999999999988 64  7999997754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.86  E-value=0.089  Score=38.69  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ...++|+|+|.++-++++.|.+ +.+|.|+-|..
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4479999999999999999999 88999998874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.14  Score=37.23  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .|+|+|+|..|+.++.-+.. |.+|+++++...
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            69999999999997766555 999999988644

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.82  E-value=0.14  Score=38.21  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=28.5

Q ss_pred             ccEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           33 YDYIIIG-GGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      --++|.| +|..|..+|..|++ |.+|+++.|..
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            3588888 79999999999999 99999999874

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.74  E-value=0.16  Score=36.64  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=26.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      -|+|+|+|..|+.++..+.. |.+|+++++..
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58999999999987776666 99999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.73  E-value=0.17  Score=36.65  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=28.5

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .|-|||.|..|...|.+|.+ |++|.+.+|..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            37899999999999999999 99999999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.67  E-value=0.19  Score=36.66  Aligned_cols=32  Identities=9%  Similarity=0.204  Sum_probs=26.6

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~   65 (277)
                      -|+|+|+|..|+.++..++. + .+|+++++.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            38899999999999988877 5 57999988754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.52  E-value=0.16  Score=37.38  Aligned_cols=32  Identities=9%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~   65 (277)
                      -|+|+|+|..|+.++..+.. | .+|+++|..+.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            49999999999999888877 7 58999998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.52  E-value=0.15  Score=37.15  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .++|||-|..|-.+|..|.. |.+|+|.|..+.
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            59999999999999999999 999999999753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.45  E-value=0.18  Score=35.82  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      .+.|||+|..|.++|+.|+. +  -+++|+|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            48899999999999999997 6  3799999764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.39  E-value=0.18  Score=36.40  Aligned_cols=30  Identities=27%  Similarity=0.397  Sum_probs=27.9

Q ss_pred             EEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      |-|||-|..|...|..|++ |++|.+.+|.+
T Consensus         3 IgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            7799999999999999999 99999999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.17  E-value=0.21  Score=35.50  Aligned_cols=31  Identities=29%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      .|.|||+ |..|.++|+.|+. +  .+++|++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            4899995 9999999999998 7  4899998763

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.13  E-value=0.18  Score=35.00  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             CCccEEEECCChhhHHHHhhhhC--CCc-EEEEcCCC
Q 045695           31 SYYDYIIIGGGTAGCPLAATLSQ--NAS-VLLLERGG   64 (277)
Q Consensus        31 ~~~DviIIGsG~aG~~aA~~La~--g~~-VlvlE~g~   64 (277)
                      .++-|+|+|+|.+|...+..+..  +.+ |..+|-.+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            46789999999999999988765  556 45666543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.94  E-value=0.26  Score=34.98  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=25.6

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      .|.|||+ |..|.++|+.|+. +.  +++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            4889995 9999999999998 74  68888875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.62  E-value=0.31  Score=32.89  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      .+-|-|+|+|--|-..|..+.+ |.+|.+++.....
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            3469999999999999999999 9999999998664

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.55  E-value=0.18  Score=36.52  Aligned_cols=33  Identities=24%  Similarity=0.217  Sum_probs=30.6

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.++|+|=|..|--.|.+|.. |.+|.|.|..+.
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            379999999999999999999 999999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.46  E-value=0.22  Score=36.40  Aligned_cols=31  Identities=16%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CCcE-EEEcCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NASV-LLLERG   63 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~~V-lvlE~g   63 (277)
                      -.|+|+|+|..|+.++..+.. |.++ ++.+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            369999999999998877766 8755 556654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.33  E-value=0.2  Score=37.56  Aligned_cols=31  Identities=23%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      .|+|+|+|+.|+.++..+.. | .+|++++..+
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            79999999999988888755 6 4889998764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.20  E-value=0.22  Score=36.53  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=26.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .|+|+|+|..|+.++..+.. |. +|++.|..+.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            69999999999998888777 86 6778888753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=87.12  E-value=0.26  Score=34.77  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~~   65 (277)
                      .+.|||+|..|.+.|+.|+. +  .++.|+|....
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            48899999999999999988 6  48999997754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.10  E-value=0.31  Score=34.84  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.5

Q ss_pred             ccEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      ..|.|||+|..|.++|+.|.+ + .+++|++...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            469999999999999998887 6 4899999854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.07  E-value=0.17  Score=38.37  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-+|+|||+|.+|+=+|..|++ +.++.++=+.+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~   66 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH   66 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence            4589999999999999999999 888877766644

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.97  E-value=0.27  Score=35.81  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=27.2

Q ss_pred             EEEECCChhhHHHHhhhhC-C-CcEEEEcCCCC
Q 045695           35 YIIIGGGTAGCPLAATLSQ-N-ASVLLLERGGS   65 (277)
Q Consensus        35 viIIGsG~aG~~aA~~La~-g-~~VlvlE~g~~   65 (277)
                      |+|+|+|..|+.++..++. | .+|++++....
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            8999999999999999888 6 68999998754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.70  E-value=0.24  Score=35.81  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC--cEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA--SVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~--~VlvlE~g~   64 (277)
                      .+.|||.|..|.+.|+.|.+ |.  +|...|+..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            48999999999999999998 74  788888864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.70  E-value=0.28  Score=38.60  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=29.3

Q ss_pred             ccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .-|+|+|| |..|..++..|.+ |++|.++.|...
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            34999996 9999999999999 999999988754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.25  Score=36.40  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      ...|+|+|+|.+|-++++.|.+ |. ++.|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3589999999999999999999 75 7889888644

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.48  E-value=0.29  Score=38.17  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CccEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCCCC
Q 045695           32 YYDYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGSPY   67 (277)
Q Consensus        32 ~~DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~~~   67 (277)
                      +.-|+|+|+ |..|..++.+|.+ |++|.++.|.....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~   40 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTAS   40 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccc
Confidence            345999997 9999999999999 99999999986543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.86  E-value=0.29  Score=34.51  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             cEEEECCChhhHHHHhhhhC-C--CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N--ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g--~~VlvlE~g~   64 (277)
                      .+.|||+|..|.++|+.|+. +  .+++++|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            47899999999999999988 6  4799998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.84  E-value=0.32  Score=35.51  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+=|||.|..|...|..|.+ |++|.+.+|.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            47799999999999999999 99999998863

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.58  E-value=0.27  Score=34.97  Aligned_cols=32  Identities=28%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      .+-|||.|..|...|..|.+ |++|++..+...
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            37799999999999999999 999999877643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=85.26  E-value=0.29  Score=36.86  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CCcEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NASVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~~VlvlE~g   63 (277)
                      ..-|+|-|.|..|..+|..|.+ |.+|++.|..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            3469999999999999999999 9999998864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=83.95  E-value=0.39  Score=35.01  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             cEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~   65 (277)
                      .|+|+|+|..|+.++..+.. |. +|++++....
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            59999999999998888877 85 7899988743

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.85  E-value=0.57  Score=33.25  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      .+-|||.|..|.+.|..|.+ +.+|.|.+|..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            37899999999999999999 99999998863

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.74  E-value=0.54  Score=29.47  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             cEEEECCChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|-|+|+|==|-..+.+..+ |.+|.+++-...
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            37899999999999999999 999999997654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=0.42  Score=32.65  Aligned_cols=33  Identities=12%  Similarity=0.316  Sum_probs=28.0

Q ss_pred             ccEEEECCCh-----------hhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           33 YDYIIIGGGT-----------AGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        33 ~DviIIGsG~-----------aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -.|+|||||+           ++.-++..|.+ |.+++++--.+.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            3699999994           68888888999 999999987754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=0.46  Score=40.10  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=30.3

Q ss_pred             ccEEEECCChhhHHHHhhhhC-CC-cEEEEcCCCCC
Q 045695           33 YDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERGGSP   66 (277)
Q Consensus        33 ~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g~~~   66 (277)
                      ..|+|||+|..|+.+|..|+. |. ++.|+|-....
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve   73 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTID   73 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence            479999999999999999999 96 89999987543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.39  Score=35.76  Aligned_cols=32  Identities=31%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      -|+|+| +|..|..++.+|.+ |++|.++.|.+.
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            489999 59999999999988 999999988643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.46  E-value=0.59  Score=36.44  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=25.9

Q ss_pred             EEEECC-C--hhhHHHHhhhhC-CCcEEEEcCCC
Q 045695           35 YIIIGG-G--TAGCPLAATLSQ-NASVLLLERGG   64 (277)
Q Consensus        35 viIIGs-G--~aG~~aA~~La~-g~~VlvlE~g~   64 (277)
                      ++|.|+ |  -.|.++|..|++ |.+|+++.|..
T Consensus         8 alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           8 GLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             EEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            788885 3  489999999999 99999999874

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.34  E-value=0.45  Score=36.66  Aligned_cols=31  Identities=13%  Similarity=0.205  Sum_probs=24.8

Q ss_pred             EEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           35 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      |||.|+ +-.|.++|.+|++ |.+|+++++...
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355564 5689999999999 999999998643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.16  E-value=0.55  Score=33.26  Aligned_cols=31  Identities=23%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             cEEEECCChhhHHHHhhhhC-C-CcEEEEcCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQ-N-ASVLLLERGG   64 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~-g-~~VlvlE~g~   64 (277)
                      .+.+||+|.-|.+.|..|.+ | .+|.+.+|..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47899999999999999888 6 8999999884

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.33  E-value=0.56  Score=33.70  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=28.2

Q ss_pred             CccEEEECCChhhHHHHhhhhC-CC-cEEEEcCC
Q 045695           32 YYDYIIIGGGTAGCPLAATLSQ-NA-SVLLLERG   63 (277)
Q Consensus        32 ~~DviIIGsG~aG~~aA~~La~-g~-~VlvlE~g   63 (277)
                      ..-++|||+|-.|..+|..|.. |. +|+|.-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            4469999999999999999999 97 58888876

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.06  E-value=0.55  Score=33.09  Aligned_cols=30  Identities=17%  Similarity=0.409  Sum_probs=25.3

Q ss_pred             cEEEEC-CChhhHHHHhhhhC-CC--cEEEEcCC
Q 045695           34 DYIIIG-GGTAGCPLAATLSQ-NA--SVLLLERG   63 (277)
Q Consensus        34 DviIIG-sG~aG~~aA~~La~-g~--~VlvlE~g   63 (277)
                      .|.||| +|..|.++|+.|.. +.  +++++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            478999 69999999999988 63  68888863

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.63  E-value=0.82  Score=34.87  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             cEEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCCC
Q 045695           34 DYIIIGG-GTAGCPLAATLSQ-NASVLLLERGGSP   66 (277)
Q Consensus        34 DviIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~~   66 (277)
                      -|||.|+ +-.|..+|..|++ |.+|.++++....
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3788887 5589999999999 9999999876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.50  E-value=0.63  Score=31.85  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=25.5

Q ss_pred             cEEEECCChhhHHHHhhhhCCCcEEEEcCCCC
Q 045695           34 DYIIIGGGTAGCPLAATLSQNASVLLLERGGS   65 (277)
Q Consensus        34 DviIIGsG~aG~~aA~~La~g~~VlvlE~g~~   65 (277)
                      -+||+|.|..|..++.+|. +.+|.|||..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~-~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR-GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC-GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc-CCCCEEEEcchH
Confidence            3899999999999999985 566788887644

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.40  E-value=0.61  Score=35.39  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             EEEECC-ChhhHHHHhhhhC-CCcEEEEcCCCC
Q 045695           35 YIIIGG-GTAGCPLAATLSQ-NASVLLLERGGS   65 (277)
Q Consensus        35 viIIGs-G~aG~~aA~~La~-g~~VlvlE~g~~   65 (277)
                      +||-|+ +-.|..+|..|++ |.+|++.++...
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            455554 6789999999999 999999998754