Citrus Sinensis ID: 045699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MAHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEcHHHHHccccc
Coil and Loop (DISEMBL)
mahfifsiPAKVLGqlvgtipgqlrnyKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLkglcpnlmnryQLSKKAAWEVKAIAGLleegkfdevsfctrpegILLMCSEGYEAFESRKSILNDALdalsnpnvdviglcgvggigkTTLAKIVCDQAKKLKVCDEVVFVEvsrtpdvkriqgdvadqlslnicegsESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Flexible Loop (DISEMBL)
MAHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVeagkliedeekEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGlleegkfdevsFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQakklkvcdevVFVEvsrtpdvkriqgdvadqlsLNICEGSESERAMMLCGqlkkgkkilfVLDNIWTSLDLEK
Low Complexity Region (SEG)
MAHFIFSIPAKVLGQLVGTIPGQLRNYKSNFAdlkkkteklkltiedlQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIedeekekkkCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Disordered region (IsUnstruct)
**HFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIED****KKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSL****
Disordered Region (DISOPRED)
MAHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLE*******************************SILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ******************GQLKKGKKILFVLDNIWTSLDLE*
Disordered Region (DISEMBL)
MAHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Disordered Region (DISPRO)
*AHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHFIFSIPAKVLGQLVGTIPGQxxxxxxxxxxxxxxxxxxxxxIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
O22727	967	Probable disease resistan	yes	no	0.894	0.246	0.289	8e-18
O64789	925	Probable disease resistan	no	no	0.887	0.255	0.284	3e-16
Q9FLB4	874	Putative disease resistan	no	no	0.894	0.272	0.270	7e-16
P60838	894	Probable disease resistan	no	no	0.902	0.268	0.293	7e-16
Q940K0	889	Probable disease resistan	no	no	0.962	0.287	0.268	1e-15
O64973	889	Disease resistance protei	no	no	0.973	0.291	0.271	7e-13
Q8L3R3	885	Disease resistance protei	no	no	0.898	0.270	0.265	2e-11
O82484	892	Putative disease resistan	no	no	0.875	0.261	0.267	1e-10
Q9C8K0	854	Probable disease resistan	no	no	0.962	0.299	0.266	5e-10
O81825	919	Probable disease resistan	no	no	0.368	0.106	0.326	1e-09

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 135/252 (53%), Gaps = 14/252 (5%)

Query: 22  GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAG 81
           G +RN + N   L+++ E L+ T  ++Q  V   +   ++  ++V+ WL   N+  +E  
Sbjct: 26  GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECK 85

Query: 82  KLIEDEEKEKKK-CLKGLCPNLM-NRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEG 139
            L+     E +K CL GLC   + + Y+  K+    ++ +  L  EG FDEVS   +P  
Sbjct: 86  DLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVS---QPPP 142

Query: 140 ILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ-AKKLK 198
              +     +    ++ +L  A + L    V ++GL G+GG+GKTTL K + ++ A+   
Sbjct: 143 RSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGG 202

Query: 199 VCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG-----SESERAMMLCGQLKKGKKILF 253
             D V+++ VS+   + ++Q D+A++L L  C+      +ES++A  +  ++ KGK+ + 
Sbjct: 203 TFDIVIWIVVSQGAKLSKLQEDIAEKLHL--CDDLWKNKNESDKATDI-HRVLKGKRFVL 259

Query: 254 VLDNIWTSLDLE 265
           +LD+IW  +DLE
Sbjct: 260 MLDDIWEKVDLE 271

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 133/250 (53%), Gaps = 14/250 (5%)

Query: 24  LRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKL 83
           +R  + N   L+++ E L+ T  ++Q  V   +   ++  ++V+ WL   N+  +E   L
Sbjct: 29  IRTLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECKDL 88

Query: 84  IEDEEKEKKK-CLKGLCPNLM-NRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGIL 141
           +     E +K CL GLC   + + Y+  KK    ++ +  L  EG FDEVS   +P    
Sbjct: 89  LSVSPVELQKLCLCGLCTKYVCSSYKYGKKVFLLLEEVKILKSEGNFDEVS---QPPPRS 145

Query: 142 LMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KVC 200
            +     +    ++ +L  A + L    V ++GL G+GG+GKTTL K + ++  ++    
Sbjct: 146 EVEERPTQPTIGQEEMLEKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAEIGGTF 205

Query: 201 DEVVFVEVSRTPDVKRIQGDVADQLSLNICEG-----SESERAMMLCGQLKKGKKILFVL 255
           D V+++ VS+   + ++Q D+A++L L  C+      +ES++A  +  ++ KGK+ + +L
Sbjct: 206 DIVIWIVVSQGAKLSKLQEDIAEKLHL--CDDLWKNKNESDKATDI-HRVLKGKRFVLML 262

Query: 256 DNIWTSLDLE 265
           D+IW  +DLE
Sbjct: 263 DDIWEKVDLE 272

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 13/251 (5%)

Query: 22  GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAG 81
            + RN   + A LKK   +L+   +DL   +   ++ G  +   V++WL    + V EA 
Sbjct: 27  NRFRNLVDHVAALKKTVRQLEARRDDLLKRIKVQEDRGLNLLDEVQQWLSEVESRVCEAH 86

Query: 82  KLI--EDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEG 139
            ++   DEE +   C +         Y  SK    +++ +  LL +G FDEV+     +G
Sbjct: 87  DILSQSDEEIDNLCCGQYCSKRCKYSYDYSKSVINKLQDVENLLSKGVFDEVA----QKG 142

Query: 140 ILLMCSEG--YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL 197
            +    E   ++    +++I+    +++    V ++G+ G+GG+GKTTL   + ++ + +
Sbjct: 143 PIPKVEERLFHQEIVGQEAIVESTWNSMMEVGVGLLGIYGMGGVGKTTLLSQINNKFRTV 202

Query: 198 KV-CDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG---KKILF 253
               D  ++V VS+ P VKRIQ D+  +L L   EG E +    +   +K+    KK + 
Sbjct: 203 SNDFDIAIWVVVSKNPTVKRIQEDIGKRLDL-YNEGWEQKTENEIASTIKRSLENKKYML 261

Query: 254 VLDNIWTSLDL 264
           +LD++WT +DL
Sbjct: 262 LLDDMWTKVDL 272

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 22  GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAK--ENGEEIEQSVERWLISANTTVVE 79
           G +     N   +KK  E LK   +D++  VD  +     E + Q V+ WL + +T   +
Sbjct: 27  GYICELSKNVVAMKKDMEVLKKKRDDVKRRVDIEEFTRRRERLSQ-VQGWLTNVSTVENK 85

Query: 80  AGKLIEDEEKEKKK-CLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRP 137
             +L+   + E ++ CL G C  N+   Y   K+    +K I  L  +G FD V+  T  
Sbjct: 86  FNELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLKEIESLSSQGDFDTVTLATPI 145

Query: 138 EGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ-AKK 196
             I  M  +       ++++L      L+    +++GL G+GG+GKTTL   + ++ ++K
Sbjct: 146 ARIEEMPIQ--PTIVGQETMLERVWTRLTEDGDEIVGLYGMGGVGKTTLLTRINNKFSEK 203

Query: 197 LKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG---SESERAMMLCGQLKKGKKILF 253
                 V++V VS++PD+ RIQGD+  +L L   E    +E++RA+ +   L K +K + 
Sbjct: 204 CSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVNENQRALDIYNVLGK-QKFVL 262

Query: 254 VLDNIWTSLDLE 265
           +LD+IW  ++LE
Sbjct: 263 LLDDIWEKVNLE 274

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 140/272 (51%), Gaps = 16/272 (5%)

Query: 4   FIFSIPAKVLGQLVGTIPGQ--LRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEE 61
           F   +  + L ++   + G+  +R  + N   L+++ E L+    ++Q  V   +   + 
Sbjct: 5   FSLQVSDQTLNRIFNCLIGKSYIRTLEKNLRALQREMEDLRAIQHEVQNKVARDEARHQR 64

Query: 62  IEQSVERWLISANTTVVEAGKLIEDEEKEKKK-CLKGLCPNLM-NRYQLSKKAAWEVKAI 119
             ++V+ WL   N+  +E   L+     E +K CL GLC   + + Y+  KK    ++ +
Sbjct: 65  RLEAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEV 124

Query: 120 AGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVG 179
             L  EG FDEVS   +P     +     +    ++ +L  A + L    V ++GL G+G
Sbjct: 125 KKLNSEGNFDEVS---QPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMG 181

Query: 180 GIGKTTLAKIVCDQAKKL-KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG-----S 233
           G+GKTTL K + ++  ++    D V+++ VS+   + ++Q D+A++L L  C+      +
Sbjct: 182 GVGKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHL--CDDLWKNKN 239

Query: 234 ESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
           ES++A  +  ++ KGK+ + +LD+IW  +DLE
Sbjct: 240 ESDKATDI-HRVLKGKRFVLMLDDIWEKVDLE 270

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 14/273 (5%)

Query: 4   FIFSIP----AKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENG 59
           F  S+P         QL+      + N   N A L+K    LK    D+   ++  +  G
Sbjct: 5   FSVSLPCDQVVSQFSQLLCVRGSYIHNLSKNLASLQKAMRMLKARQYDVIRRLETEEFTG 64

Query: 60  EEIEQS-VERWLISANTTVVEAGKLIEDEEKEKKK-CLKGLCP-NLMNRYQLSKKAAWEV 116
            +   S V+ WL S      +   L+   E E ++ CL G C  +L   Y+  K+    +
Sbjct: 65  RQQRLSQVQVWLTSVLIIQNQFNDLLRSNEVELQRLCLCGFCSKDLKLSYRYGKRVIMML 124

Query: 117 KAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLC 176
           K +  L  +G FD VS  T    +  +  +       ++ +L  A + L      ++GL 
Sbjct: 125 KEVESLSSQGFFDVVSEATPFADVDEIPFQ--PTIVGQEIMLEKAWNRLMEDGSGILGLY 182

Query: 177 GVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSE- 234
           G+GG+GKTTL   + ++  K+    D V++V VSR+  V++IQ D+A+++ L   E SE 
Sbjct: 183 GMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRSSTVRKIQRDIAEKVGLGGMEWSEK 242

Query: 235 --SERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
             ++ A+ +   L++ +K + +LD+IW  ++L+
Sbjct: 243 NDNQIAVDIHNVLRR-RKFVLLLDDIWEKVNLK 274

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 122/249 (48%), Gaps = 10/249 (4%)

Query: 24  LRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQS-VERWLISANTTVVEAGK 82
           ++N   N A L+K    L    +D+Q  ++  +  G     + V+ WL    T   +   
Sbjct: 29  IQNLSENLASLQKAMGVLNAKRDDVQGRINREEFTGHRRRLAQVQVWLTRIQTIENQFND 88

Query: 83  LIEDEEKE-KKKCLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGI 140
           L+     E ++ CL G C  N+   Y   K+    ++ + GL  +G FD V+       +
Sbjct: 89  LLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLSSQGVFDIVTEAAPIAEV 148

Query: 141 LLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV 199
             +  +       + S+L+   + L    V ++GL G+GG+GKTTL   + ++  KL   
Sbjct: 149 EELPIQS--TIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGKTTLLTQINNKFSKLGGG 206

Query: 200 CDEVVFVEVSRTPDVKRIQGDVADQLSL---NICEGSESERAMMLCGQLKKGKKILFVLD 256
            D V++V VS+   V +IQ  + ++L L   N  E ++++RA+ +   L++ KK + +LD
Sbjct: 207 FDVVIWVVVSKNATVHKIQKSIGEKLGLVGKNWDEKNKNQRALDIHNVLRR-KKFVLLLD 265

Query: 257 NIWTSLDLE 265
           +IW  ++L+
Sbjct: 266 DIWEKVELK 274

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 24  LRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKL 83
           +   K N   L+K  E L  T +D+   V   +  G E  Q V+ WL        +   L
Sbjct: 29  IHKLKDNIVALEKAIEDLTATRDDVLRRVQMEEGKGLERLQQVQVWLKRVEIIRNQFYDL 88

Query: 84  IEDEEKE-KKKCLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVS-----FCTR 136
           +     E ++ C    C  NL + Y   ++    +K +  L   G F+ V+        R
Sbjct: 89  LSARNIEIQRLCFYSNCSTNLSSSYTYGQRVFLMIKEVENLNSNGFFEIVAAPAPKLEMR 148

Query: 137 PEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK 196
           P    +M          R++I   A + L +  V  +GL G+GG+GKTTL   + +    
Sbjct: 149 PIQPTIM---------GRETIFQRAWNRLMDDGVGTMGLYGMGGVGKTTLLTQIHNTLHD 199

Query: 197 LKV-CDEVVFVEVSRTPDVKRIQGDVADQLSL---NICEGSESERAMMLCGQLKKGKKIL 252
            K   D V++V VS    + +IQ D+ ++L        +  ES++A+ +   L K K+ +
Sbjct: 200 TKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKEWNKKQESQKAVDILNCLSK-KRFV 258

Query: 253 FVLDNIWTSLDLEK 266
            +LD+IW  +DL K
Sbjct: 259 LLLDDIWKKVDLTK 272

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K0|DRL5_ARATH Probable disease resistance protein At1g51480 OS=Arabidopsis thaliana GN=At1g51480 PE=2 SV=2

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 25/281 (8%)

Query: 1   MAHFIFSIP-AKVLGQLVGTIPGQLRNY----KSNFADLKKKTEKLKLTIEDLQLWVDAA 55
           MA ++  IP  K+     G      RNY    ++N  DL    E+LK   +DL   V   
Sbjct: 1   MADWLLLIPWNKIFTAACGCFFSD-RNYIHKMEANLDDLHTTMEELKNGRDDLLRRVSIE 59

Query: 56  KENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKK-CLKGLCP-NLMNRYQLSKKAA 113
           ++ G +    V+ W+            L+ED+  E  + CL G C  N ++ Y   +K  
Sbjct: 60  EDKGLQQLAQVKGWISRVEIVESRFKDLLEDKSTETGRLCLFGFCSENCISSYNYGEKVM 119

Query: 114 WEVKAIAGLLEEGKFDEVSF---CTRPEGILLMCSEGYEAF--ESRKSILNDALDALSNP 168
             ++ +  LL +  F+ V+      + E   +  + G  A    + KS++ND +  L   
Sbjct: 120 KNLEEVKELLSKKHFEVVAHKIPVPKVEEKNIHTTVGLYAMVEMAWKSLMNDEIRTLC-- 177

Query: 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVADQLSL 227
                 L G+GG+GKTTL   + ++  +L+   D V++V VS+   ++ IQ  +  +L L
Sbjct: 178 ------LHGMGGVGKTTLLACINNKFVELESEFDVVIWVVVSKDFQLEGIQDQILGRLRL 231

Query: 228 N--ICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           +      +E+++A ++   LK+ KK + +LD++W+ +DL K
Sbjct: 232 DKEWERETENKKASLINNNLKR-KKFVLLLDDLWSEVDLNK 271

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE---VVFVEVSRTPDVKRIQGDVADQL 225
           NV  IG+ G+GG+GKTTL + + +   K     +   V++V VS+  D+KR+Q D+A +L
Sbjct: 133 NVQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQQFALVIWVTVSKDFDLKRVQMDIAKRL 192

Query: 226 SLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
                    ++  + +C +L   K  L +LD++W  +DL++
Sbjct: 193 GKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPIDLDQ 233

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
359488027	1520	PREDICTED: disease resistance protein At	1.0	0.175	0.438	1e-51
147802546	1409	hypothetical protein VITISV_007222 [Viti	1.0	0.188	0.434	4e-51
147833354	1494	hypothetical protein VITISV_041837 [Viti	0.988	0.176	0.412	5e-46
302143649	1436	unnamed protein product [Vitis vinifera]	0.984	0.182	0.416	5e-45
147772601	1392	hypothetical protein VITISV_013427 [Viti	0.988	0.188	0.401	9e-45
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.984	0.147	0.416	2e-44
296087869	1711	unnamed protein product [Vitis vinifera]	0.984	0.153	0.416	2e-44
359488101	1677	PREDICTED: disease resistance protein At	0.988	0.156	0.401	8e-44
302143655	1224	unnamed protein product [Vitis vinifera]	0.988	0.214	0.401	9e-44
298204970	949	unnamed protein product [Vitis vinifera]	0.984	0.276	0.405	9e-44

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/269 (43%), Positives = 170/269 (63%), Gaps = 3/269 (1%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + +I AKV   LV  I    G L NY+SN  DL+++ EKL      L+  VD A  
Sbjct: 1   MEEIVVTIAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG+EIE  V++WL+  +  + EAG   E E+K  + C  G CPNL ++YQLS++A    +
Sbjct: 61  NGDEIEADVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRAR 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
            +A +  +GKF+ VS+     GI     +G+EA ESR + L++ ++AL + +V++IG+ G
Sbjct: 121 VVAEIQGDGKFERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWG 180

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           + G+GKTTL K V  QA++ K+ D+VV   +S TP++K+IQG++AD L L   E SE  R
Sbjct: 181 MAGVGKTTLMKQVAKQAEEEKLFDKVVMAYISSTPELKKIQGELADMLGLKFEEESEMGR 240

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  LC +LKK KKIL +LD+IWT LDLEK
Sbjct: 241 AARLCERLKKVKKILIILDDIWTELDLEK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802546|emb|CAN77665.1| hypothetical protein VITISV_007222 [Vitis vinifera]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/269 (43%), Positives = 169/269 (62%), Gaps = 3/269 (1%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + +I AKV   LV  I    G L NY+SN  DL+++ EKL      L+  VD A  
Sbjct: 1   MEEIVVTIAAKVAEYLVAPIGRSFGYLFNYRSNIDDLRQQVEKLGDARARLERSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG+EIE  V++WL+  +  + EAG   E E+K  + C  G CPNL ++YQLS++A    +
Sbjct: 61  NGDEIEADVDKWLLRVSGFMEEAGIFFEVEKKANQSCFNGSCPNLKSQYQLSREAKKRAR 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
            +A +  +GKF+ VS+     GI     +G+EA ESR + L++ ++AL + +V++IG+ G
Sbjct: 121 VVAEIQGDGKFERVSYRAPLPGIGSAPFKGHEALESRMTTLDEIMEALRDAHVNIIGVWG 180

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           + G+GKTTL K V  Q ++ K+ D+VV   +S TP++K+IQG++AD L L   E SE  R
Sbjct: 181 MAGVGKTTLMKQVAKQVEEEKLFDKVVMAYISSTPELKKIQGELADMLGLKFEEESEMGR 240

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  LC +LKK KKIL +LD+IWT LDLEK
Sbjct: 241 AARLCERLKKVKKILIILDDIWTELDLEK 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833354|emb|CAN66237.1| hypothetical protein VITISV_041837 [Vitis vinifera]

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 168/269 (62%), Gaps = 6/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   +FS+ AKV   LV  +    G L NY++N  DL ++ EKL+   +  Q  V+ A  
Sbjct: 1   MVDIVFSVAAKVSEYLVVPVVRQLGYLFNYRTNIEDLSQEVEKLRDARDRHQHSVNEAIG 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V +WL  A+  + +A K +EDE++ +K C  GLCPNL +R+QLS++A  +  
Sbjct: 61  NGHKIEDYVCKWLTRADGFIQDACKFLEDEKEAQKSCFNGLCPNLKSRHQLSREARKKAG 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               +LE G+F++VS+ T  +GI    SE   A ESR   LN+ ++AL + N++ IGL G
Sbjct: 121 VSVQILENGQFEKVSYRTPLQGIRTAPSE---ALESRMLTLNEVMEALRDANINRIGLWG 177

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GK+TL K + +QA + K+ D+VV V V +TPD++RIQ ++AD L +   E SE  R
Sbjct: 178 MGGVGKSTLVKHLAEQANQEKLFDKVVKVSVLQTPDLERIQRELADGLGMKFEEESEQGR 237

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  +++  K IL +LD++W  L+LEK
Sbjct: 238 AARLLQRMEAEKTILIILDDLWAELELEK 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143649|emb|CBI22402.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 162/269 (60%), Gaps = 7/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+  KV   LVG +    G L NY +N  DL +K EKL+     LQ  VD A  
Sbjct: 1   MVEIVVSVAEKVSEYLVGPVVRQLGYLFNYSTNIEDLSQKVEKLRGARARLQHSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V +W+  A+  + +  K +EDEE  +K C  GLCPNL +RYQLS++A+ +  
Sbjct: 61  NGHKIEDDVCKWMTRADGFIQKDCKFLEDEEA-RKSCFNGLCPNLKSRYQLSREASKKAG 119

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               +L +G+F++V++    +GI    SE   A ESR   LN+ ++AL +  ++ IG+ G
Sbjct: 120 VSVQILGDGQFEKVAYRAPLQGIRCRPSE---ALESRMLTLNEVMEALRDAKINKIGVWG 176

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V +QA + K+ D+VV   V  TPD+K+IQG++AD L +   E SE  R
Sbjct: 177 LGGVGKTTLVKQVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGR 236

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW  LDLEK
Sbjct: 237 AARLYQRMNEEKTILIILDDIWAKLDLEK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772601|emb|CAN62857.1| hypothetical protein VITISV_013427 [Vitis vinifera]

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 164/269 (60%), Gaps = 6/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+ AKVL  LV  +    G L NY++N  DL ++ EKL+   +  Q  V+ A  
Sbjct: 1   MVEIVASVAAKVLECLVVPVKRQLGYLFNYRTNIEDLSQEVEKLRHARDGHQHSVNEASG 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V +WL  A+  + +A K +EDE++ +K C  GLCPNL +RYQLS++A  + +
Sbjct: 61  NGHKIEDYVCKWLTRADGFIQDACKFLEDEKEAQKSCFNGLCPNLKSRYQLSREARKKAR 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               +L +G+F+ VS+    + I    S   EA  SR   L++ ++AL +  ++ IG+ G
Sbjct: 121 VAVQMLGDGQFERVSYRAPLQEIR---SAPSEALRSRVLTLDEVMEALRDAKINKIGVWG 177

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V + A + K+ D+VV   V +TPD+K+IQG++AD L +   E SE  R
Sbjct: 178 LGGVGKTTLVKQVAEHAAQEKLFDKVVTAAVLQTPDLKKIQGELADLLGMKFEEESEQGR 237

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW +LDLEK
Sbjct: 238 AARLYQRMNEEKTILIILDDIWATLDLEK 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 158/269 (58%), Gaps = 7/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+ AKV   LVG +    G L NY++N  DL +K EKL+     LQ  VD A  
Sbjct: 1   MVEIVVSVAAKVSEYLVGPVVRQLGYLFNYRTNIEDLSQKVEKLRGARARLQHSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V +W+  A+  + +  K +EDEE  +K C  GLCPNL +RYQLS++A  +  
Sbjct: 61  NGHKIEDDVCKWMTRADGFIQKDCKFLEDEEA-RKSCFNGLCPNLKSRYQLSREARKKAG 119

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               + E G+F+  S+    + I    S   EA ESR   LN+ + AL +  ++ IG+ G
Sbjct: 120 VAVEIHEAGQFERASYRAPLQEIR---SAPSEALESRMLTLNEVMKALRDAKINKIGVWG 176

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V +QA + K+ D+VV   V  TPD+K+IQG++AD L +   E SE  R
Sbjct: 177 LGGVGKTTLVKQVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGR 236

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW  LDLEK
Sbjct: 237 AARLYQRMNEEKTILIILDDIWAKLDLEK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 158/269 (58%), Gaps = 7/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+ AKV   LVG +    G L NY++N  DL +K EKL+     LQ  VD A  
Sbjct: 1   MVEIVVSVAAKVSEYLVGPVVRQLGYLFNYRTNIEDLSQKVEKLRGARARLQHSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V +W+  A+  + +  K +EDEE  +K C  GLCPNL +RYQLS++A  +  
Sbjct: 61  NGHKIEDDVCKWMTRADGFIQKDCKFLEDEEA-RKSCFNGLCPNLKSRYQLSREARKKAG 119

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               + E G+F+  S+    + I    S   EA ESR   LN+ + AL +  ++ IG+ G
Sbjct: 120 VAVEIHEAGQFERASYRAPLQEIR---SAPSEALESRMLTLNEVMKALRDAKINKIGVWG 176

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V +QA + K+ D+VV   V  TPD+K+IQG++AD L +   E SE  R
Sbjct: 177 LGGVGKTTLVKQVAEQAAQEKLFDKVVTAAVLETPDLKKIQGELADLLGMKFEEESEQGR 236

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW  LDLEK
Sbjct: 237 AARLYQRMNEEKTILIILDDIWAKLDLEK 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 159/269 (59%), Gaps = 6/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+ AKV   LV ++    G L NY++N  DL +K EKL+      Q  VD A  
Sbjct: 1   MVEIVVSVAAKVSEYLVDSVVRQLGYLSNYRTNIEDLSQKVEKLRDARARQQHSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V  W+  A+  +    K +EDE++ +K C KGLCPNL +RYQLS++A  +  
Sbjct: 61  NGHKIEDDVCNWMTRADGFIQNVCKFLEDEKEARKSCFKGLCPNLKSRYQLSREARKKAG 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               +  +G+F+ VS+    + I    S   EA  SR   L++ ++AL +  ++ IG+ G
Sbjct: 121 VAVQIHGDGQFERVSYRAPQQEIR---SAPSEALRSRVLTLDEVMEALRDAKINKIGVWG 177

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V +QA + K+ D+VV   V +TPD+K+IQG++AD L +   E SE  R
Sbjct: 178 LGGVGKTTLVKQVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMKFEEESEQGR 237

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW  LDLEK
Sbjct: 238 AARLYQRMNEEKTILIILDDIWAKLDLEK 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143655|emb|CBI22408.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 108/269 (40%), Positives = 159/269 (59%), Gaps = 6/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIP---GQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + S+ AKV   LV ++    G L NY++N  DL +K EKL+      Q  VD A  
Sbjct: 1   MVEIVVSVAAKVSEYLVDSVVRQLGYLSNYRTNIEDLSQKVEKLRDARARQQHSVDEAIR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
           NG +IE  V  W+  A+  +    K +EDE++ +K C KGLCPNL +RYQLS++A  +  
Sbjct: 61  NGHKIEDDVCNWMTRADGFIQNVCKFLEDEKEARKSCFKGLCPNLKSRYQLSREARKKAG 120

Query: 118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
               +  +G+F+ VS+    + I    S   EA  SR   L++ ++AL +  ++ IG+ G
Sbjct: 121 VAVQIHGDGQFERVSYRAPQQEIR---SAPSEALRSRVLTLDEVMEALRDAKINKIGVWG 177

Query: 178 VGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESER 237
           +GG+GKTTL K V +QA + K+ D+VV   V +TPD+K+IQG++AD L +   E SE  R
Sbjct: 178 LGGVGKTTLVKQVAEQAAQEKLFDKVVKAAVLQTPDLKKIQGELADLLGMKFEEESEQGR 237

Query: 238 AMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
           A  L  ++ + K IL +LD+IW  LDLEK
Sbjct: 238 AARLYQRMNEEKTILIILDDIWAKLDLEK 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204970|emb|CBI34277.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 157/269 (58%), Gaps = 7/269 (2%)

Query: 1   MAHFIFSIPAKVLGQLVGTIPGQLRN---YKSNFADLKKKTEKLKLTIEDLQLWVDAAKE 57
           M   + ++ AKV   LV  I  QL     Y+S+  DL K+ ++L    +DLQ+ VD AK 
Sbjct: 1   MTEIVSAVVAKVSEYLVAPIGRQLSYLFCYRSHLDDLNKEVQELGHVKDDLQITVDEAKR 60

Query: 58  NGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVK 117
            G+EI  SVE W   A+    EA   +EDE+   K C  G CPNLM+RYQL ++A  + +
Sbjct: 61  RGDEIRPSVEDWQTRADKKTREAKTFMEDEKNRTKSCFNGWCPNLMSRYQLGREANKKAQ 120

Query: 118 AIAGLLEEGKF-DEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLC 176
            IA + E   F D VS+      +     +  + FESR SILN+ +DAL +    +IG+ 
Sbjct: 121 VIAEIREHRNFPDGVSYSAPAPNV---TYKNDDPFESRTSILNEIMDALRDDKNSMIGVR 177

Query: 177 GVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESE 236
           G+GG+GKTTL + V  +AK+ K+ D VV   VS+T D+K+IQ  +AD L L   E SE+ 
Sbjct: 178 GMGGVGKTTLVEQVAARAKQQKLFDRVVMAYVSQTVDLKKIQAQIADALGLKFEEESETG 237

Query: 237 RAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
           RA  L  +L + KK+L +LD++W  L+L+
Sbjct: 238 RAGRLSQRLTQEKKLLIILDDLWAGLNLK 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.759	0.225	0.301	8.2e-17
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.894	0.246	0.265	1.9e-16
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.736	0.218	0.290	4.6e-16
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.781	0.237	0.257	4.1e-15
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.740	0.222	0.271	9.3e-13
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.635	0.190	0.293	2e-12
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.439	0.127	0.325	1e-10
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.409	0.143	0.338	1.7e-09
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.766	0.239	0.255	9.1e-09
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.770	0.229	0.270	9.7e-09

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 64/212 (30%), Positives = 109/212 (51%)

Query:    60 EEIEQSVERWLISANTTVVEAGKLIXXXXXXXXX-CLKGLCP-NLMNRYQLSKKAAWEVK 117
             E + Q V+ WL + +T   +  +L+          CL G C  N+   Y   K+    +K
Sbjct:    67 ERLSQ-VQGWLTNVSTVENKFNELLTTNDAELQRLCLFGFCSKNVKMSYLYGKRVVLMLK 125

Query:   118 AIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCG 177
              I  L  +G FD V+  T    I  M  +       ++++L      L+    +++GL G
Sbjct:   126 EIESLSSQGDFDTVTLATPIARIEEMPIQ--PTIVGQETMLERVWTRLTEDGDEIVGLYG 183

Query:   178 VGGIGKTTLAKIVCDQ-AKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG---S 233
             +GG+GKTTL   + ++ ++K      V++V VS++PD+ RIQGD+  +L L   E    +
Sbjct:   184 MGGVGKTTLLTRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVN 243

Query:   234 ESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
             E++RA+ +   L K K +L +LD+IW  ++LE
Sbjct:   244 ENQRALDIYNVLGKQKFVL-LLDDIWEKVNLE 274

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 67/252 (26%), Positives = 122/252 (48%)

Query:    22 GQLRNYKSNFAXXXXXXXXXXXXXXXXQLWVDAAKENGEEIEQSVERWLISANTTVVEAG 81
             G +RN + N                  Q  V   +   ++  ++V+ WL   N+  +E  
Sbjct:    26 GYIRNLEKNLRALQREMEDLRATQHEVQNKVAREESRHQQRLEAVQVWLDRVNSIDIECK 85

Query:    82 KLIXXX-XXXXXXCLKGLCPNLM-NRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEG 139
              L+          CL GLC   + + Y+  K+    ++ +  L  EG FDEVS   +P  
Sbjct:    86 DLLSVSPVELQKLCLCGLCSKYVCSSYKYGKRVFLLLEEVTKLKSEGNFDEVS---QPPP 142

Query:   140 ILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ-AKKLK 198
                +     +    ++ +L  A + L    V ++GL G+GG+GKTTL K + ++ A+   
Sbjct:   143 RSEVEERPTQPTIGQEEMLKKAWNRLMEDGVGIMGLHGMGGVGKTTLFKKIHNKFAETGG 202

Query:   199 VCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG-----SESERAMMLCGQLKKGKKILF 253
               D V+++ VS+   + ++Q D+A++L L  C+      +ES++A  +  ++ KGK+ + 
Sbjct:   203 TFDIVIWIVVSQGAKLSKLQEDIAEKLHL--CDDLWKNKNESDKATDI-HRVLKGKRFVL 259

Query:   254 VLDNIWTSLDLE 265
             +LD+IW  +DLE
Sbjct:   260 MLDDIWEKVDLE 271

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 61/210 (29%), Positives = 111/210 (52%)

Query:    64 QSVERWLISANTTVVEAGKLIXXX-XXXXXXCLKGLCPNLM-NRYQLSKKAAWEVKAIAG 121
             ++V+ WL   N+  +E   L+          CL GLC   + + Y+  KK    ++ +  
Sbjct:    67 EAVQVWLDRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKK 126

Query:   122 LLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGI 181
             L  EG FDEVS   +P     +     +    ++ +L  A + L    V ++GL G+GG+
Sbjct:   127 LNSEGNFDEVS---QPPPRSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGGV 183

Query:   182 GKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEG-----SES 235
             GKTTL K + ++  ++    D V+++ VS+   + ++Q D+A++L L  C+      +ES
Sbjct:   184 GKTTLFKKIHNKFAEIGGTFDIVIWIVVSKGVMISKLQEDIAEKLHL--CDDLWKNKNES 241

Query:   236 ERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
             ++A  +  ++ KGK+ + +LD+IW  +DLE
Sbjct:   242 DKATDI-HRVLKGKRFVLMLDDIWEKVDLE 270

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.1e-15, P = 4.1e-15
 Identities = 57/221 (25%), Positives = 107/221 (48%)

Query:    52 VDAAKENGEEIEQSVERWLISANTTVVEAGKLIXXXXXXXXX-CLKGLCPNLMN-RYQLS 109
             +   ++ G  +   V++WL    + V EA  ++          C    C       Y  S
Sbjct:    57 IKVQEDRGLNLLDEVQQWLSEVESRVCEAHDILSQSDEEIDNLCCGQYCSKRCKYSYDYS 116

Query:   110 KKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEG--YEAFESRKSILNDALDALSN 167
             K    +++ +  LL +G FDEV+     +G +    E   ++    +++I+    +++  
Sbjct:   117 KSVINKLQDVENLLSKGVFDEVA----QKGPIPKVEERLFHQEIVGQEAIVESTWNSMME 172

Query:   168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVADQLS 226
               V ++G+ G+GG+GKTTL   + ++ + +    D  ++V VS+ P VKRIQ D+  +L 
Sbjct:   173 VGVGLLGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAIWVVVSKNPTVKRIQEDIGKRLD 232

Query:   227 LNICEGSESERAMMLCGQLKKG---KKILFVLDNIWTSLDL 264
             L   EG E +    +   +K+    KK + +LD++WT +DL
Sbjct:   233 L-YNEGWEQKTENEIASTIKRSLENKKYMLLLDDMWTKVDL 272

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 56/206 (27%), Positives = 101/206 (49%)

Query:    66 VERWLISANTTVVEAGKLIXX-XXXXXXXCLKGLCP-NLMNRYQLSKKAAWEVKAIAGLL 123
             V+ WL    T   +   L+          CL G C  N+   Y   K+    ++ + GL 
Sbjct:    72 VQVWLTRIQTIENQFNDLLSTCNAEIQRLCLCGFCSKNVKMSYLYGKRVIVLLREVEGLS 131

Query:   124 EEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGK 183
              +G FD V+       +  +  +       + S+L+   + L    V ++GL G+GG+GK
Sbjct:   132 SQGVFDIVTEAAPIAEVEELPIQS--TIVGQDSMLDKVWNCLMEDKVWIVGLYGMGGVGK 189

Query:   184 TTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVADQLSL---NICEGSESERAM 239
             TTL   + ++  KL    D V++V VS+   V +IQ  + ++L L   N  E ++++RA+
Sbjct:   190 TTLLTQINNKFSKLGGGFDVVIWVVVSKNATVHKIQKSIGEKLGLVGKNWDEKNKNQRAL 249

Query:   240 MLCGQLKKGKKILFVLDNIWTSLDLE 265
              +   L++ KK + +LD+IW  ++L+
Sbjct:   250 DIHNVLRR-KKFVLLLDDIWEKVELK 274

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 52/177 (29%), Positives = 95/177 (53%)

Query:    94 CLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFE 152
             CL G C  +L   Y+  K+    +K +  L  +G FD VS  T    +  +  +      
Sbjct:   101 CLCGFCSKDLKLSYRYGKRVIMMLKEVESLSSQGFFDVVSEATPFADVDEIPFQ--PTIV 158

Query:   153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRT 211
              ++ +L  A + L      ++GL G+GG+GKTTL   + ++  K+    D V++V VSR+
Sbjct:   159 GQEIMLEKAWNRLMEDGSGILGLYGMGGVGKTTLLTKINNKFSKIDDRFDVVIWVVVSRS 218

Query:   212 PDVKRIQGDVADQLSLNICEGSE---SERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
               V++IQ D+A+++ L   E SE   ++ A+ +   L++ +K + +LD+IW  ++L+
Sbjct:   219 STVRKIQRDIAEKVGLGGMEWSEKNDNQIAVDIHNVLRR-RKFVLLLDDIWEKVNLK 274

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 40/123 (32%), Positives = 68/123 (55%)

Query:   150 AFESRKSILN--DAL-DALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE---V 203
             +F  +K+ L   D L D L   NV  IG+ G+GG+GKTTL + + +   K     +   V
Sbjct:   111 SFHPQKTALEMLDKLKDCLKKKNVQKIGVWGMGGVGKTTLVRTLNNDLLKYAATQQFALV 170

Query:   204 VFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLD 263
             ++V VS+  D+KR+Q D+A +L         ++  + +C +L   K  L +LD++W  +D
Sbjct:   171 IWVTVSKDFDLKRVQMDIAKRLGKRFTREQMNQLGLTICERLIDLKNFLLILDDVWHPID 230

Query:   264 LEK 266
             L++
Sbjct:   231 LDQ 233

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 40/118 (33%), Positives = 73/118 (61%)

Query:   154 RKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ-AKKLKVCDEVVFVEVSRTP 212
             ++ +L  A + L    V ++GL G+GG+GKTTL K + ++ AK     D V+++ VS+  
Sbjct:    45 QEEMLEKAWNRLMEDRVGIMGLHGMGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGA 104

Query:   213 DVKRIQGDVADQLSLNICEG-----SESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
              + ++Q D+A++L L  C+      +ES++A  +  ++ KGK+ + +LD+IW  +DLE
Sbjct:   105 KLSKLQEDIAEKLHL--CDDLWKNKNESDKATDI-HRVLKGKRFVLMLDDIWEKVDLE 159

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 56/219 (25%), Positives = 101/219 (46%)

Query:    56 KENGEEIEQSVERWLISANTTVVEAGKLIXXXXXXXXX-CLKGLCP-NLMNRYQLSKKAA 113
             ++ G +    V+ WL        +   L+          CL G C  N ++         
Sbjct:    61 EDKGLQRLAQVQGWLSRVKDVCSQVNDLLKAKSIQTERLCLCGYCSKNFISGRNYGINVL 120

Query:   114 WEVKAIAGLLEEGKFDEVSF---CTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNV 170
              ++K + GLL +G F+ V+      + E   +  + G +A   R      A ++L     
Sbjct:   121 KKLKHVEGLLAKGVFEVVAEKIPAPKVEKKHIQTTVGLDAMVGR------AWNSLMKDER 174

Query:   171 DVIGLCGVGGIGKTTLAKIVCDQ-AKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI 229
               +GL G+GG+GKTTL   + ++  + +   D V++V VS+    + IQ  +  +L L+ 
Sbjct:   175 RTLGLYGMGGVGKTTLLASINNKFLEGMNGFDLVIWVVVSKDLQNEGIQEQILGRLGLHR 234

Query:   230 C--EGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
                + +E E+A  +C  L   KK + +LD++W+ +DLEK
Sbjct:   235 GWKQVTEKEKASYICNILNV-KKFVLLLDDLWSEVDLEK 272

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 59/218 (27%), Positives = 98/218 (44%)

Query:    57 ENGEEIE--QSVERWLISANTTVVEAGKLIXXXXXXXXX-CLKGLCP-NLMNRYQLSKKA 112
             E G+ +E  Q V+ WL        +   L+          C    C  NL + Y   ++ 
Sbjct:    60 EEGKGLERLQQVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTYGQRV 119

Query:   113 AWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDV 172
                +K +  L   G F+ V+    P+   L           R++I   A + L +  V  
Sbjct:   120 FLMIKEVENLNSNGFFEIVA-APAPK---LEMRPIQPTIMGRETIFQRAWNRLMDDGVGT 175

Query:   173 IGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVADQLSLNICE 231
             +GL G+GG+GKTTL   + +     K   D V++V VS    + +IQ D+ ++L     E
Sbjct:   176 MGLYGMGGVGKTTLLTQIHNTLHDTKNGVDIVIWVVVSSDLQIHKIQEDIGEKLGFIGKE 235

Query:   232 GS---ESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
              +   ES++A+ +   L K K+ + +LD+IW  +DL K
Sbjct:   236 WNKKQESQKAVDILNCLSK-KRFVLLLDDIWKKVDLTK 272

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-13
pfam13401	124	pfam13401, AAA_22, AAA domain	9e-06
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
COG1474	366	COG1474, CDC6, Cdc6-related protein, AAA superfami	0.003

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 6/118 (5%)

Query: 154 RKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT 211
           R+ ++   ++ L   + N+ V+G+ G+GG+GKTTLAK + +        D V +V VS+T
Sbjct: 1   REDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKT 60

Query: 212 PDVKRIQGDVADQLSLN---ICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLEK 266
               R+Q D+  +L L+     E +ESE A+ +   L   K+ L VLD++W   D +K
Sbjct: 61  YTEFRLQKDILQELGLDDSDWVEKNESELAVKIKEAL-LRKRFLLVLDDVWEKNDWDK 117

Length = 285

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 175 LCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSE 234
           L G  G GKTTL + +  Q         VV+VE       K +   +   L L +  G+ 
Sbjct: 9   LTGESGSGKTTLLRRLARQLPN----RRVVYVEAPSLGTPKDLLRKILRALGLPLSGGTT 64

Query: 235 SERAMMLCGQLKKGKKILFVLDNI 258
           +E    +   LK+  + L ++D  
Sbjct: 65  AELLEAILDALKRRGRPLLIIDEA 88

Length = 124

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE 231
           VI + G  G GKTTLA+ +  +         V++++     +    Q  +          
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGG--GVIYIDGEDILEEVLDQLLLIIVGGKKASG 61

Query: 232 GSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE 265
             E  R  +     +K K  + +LD I + LD E
Sbjct: 62  SGE-LRLRLALALARKLKPDVLILDEITSLLDAE 94

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 156 SILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK 215
           S L  AL      N+ + G  G G   KT   K V ++ ++     EVV++         
Sbjct: 31  SFLAPALRGERPSNIIIYGPTGTG---KTATVKFVMEELEESSANVEVVYINCLELRTPY 87

Query: 216 RIQGDVADQLSLNICEGSESERAMMLCGQL--KKGKKILFVLDNI 258
           ++   + ++L      G  S   +        KKGK ++ +LD +
Sbjct: 88  QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEV 132

Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.09
cd01128	249	rho_factor Transcription termination factor rho is	99.03
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.02
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.98
PRK09376	416	rho transcription termination factor Rho; Provisio	98.95
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.91
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.79
TIGR00767	415	rho transcription termination factor Rho. Members	98.78
PTZ00202	550	tuzin; Provisional	98.72
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.68
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.68
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.62
PF05729	166	NACHT: NACHT domain	98.54
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.46
PRK13342	413	recombination factor protein RarA; Reviewed	98.41
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.34
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.24
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.23
smart00382	148	AAA ATPases associated with a variety of cellular	98.2
PRK08118	167	topology modulation protein; Reviewed	98.19
PRK04841	903	transcriptional regulator MalT; Provisional	98.15
KOG2028	554	consensus ATPase related to the helicase subunit o	98.13
PRK12608	380	transcription termination factor Rho; Provisional	98.12
PF13173	128	AAA_14: AAA domain	98.1
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.09
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.08
PRK07261	171	topology modulation protein; Provisional	98.08
PRK12402	337	replication factor C small subunit 2; Reviewed	98.01
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.0
CHL00095	821	clpC Clp protease ATP binding subunit	98.0
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.0
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.96
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.94
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.94
PRK04195	482	replication factor C large subunit; Provisional	97.93
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.93
PRK13341	725	recombination factor protein RarA/unknown domain f	97.92
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.92
PF00004	132	AAA: ATPase family associated with various cellula	97.91
PLN03025	319	replication factor C subunit; Provisional	97.91
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.89
COG0488	530	Uup ATPase components of ABC transporters with dup	97.86
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.84
PRK06893	229	DNA replication initiation factor; Validated	97.83
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.81
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.8
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.8
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.77
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.75
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.75
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.74
PRK08727	233	hypothetical protein; Validated	97.74
PHA00729	226	NTP-binding motif containing protein	97.72
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.72
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.71
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.71
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.71
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.71
PRK10865	857	protein disaggregation chaperone; Provisional	97.7
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.7
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.69
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.68
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.68
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.66
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.66
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.66
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.65
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.64
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.62
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.61
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.61
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.6
PRK08116	268	hypothetical protein; Validated	97.6
PHA02544	316	44 clamp loader, small subunit; Provisional	97.59
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.59
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.55
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.55
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.54
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.53
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.52
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.52
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.51
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.51
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.5
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.49
PRK06696	223	uridine kinase; Validated	97.49
PRK12377	248	putative replication protein; Provisional	97.49
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.49
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.48
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.48
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.47
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.47
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.45
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.45
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.45
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.45
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.45
PRK09354	349	recA recombinase A; Provisional	97.45
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.45
COG0488	530	Uup ATPase components of ABC transporters with dup	97.43
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.43
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.43
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.42
PRK08084	235	DNA replication initiation factor; Provisional	97.42
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.42
PRK07952	244	DNA replication protein DnaC; Validated	97.4
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.39
PRK05541	176	adenylylsulfate kinase; Provisional	97.39
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.39
PRK08939	306	primosomal protein DnaI; Reviewed	97.39
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.38
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.38
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.38
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.38
PRK08181	269	transposase; Validated	97.38
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.35
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.35
CHL00176	638	ftsH cell division protein; Validated	97.35
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.35
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.34
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.33
CHL00181	287	cbbX CbbX; Provisional	97.33
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.33
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.32
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.31
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.31
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.3
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.3
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.3
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.29
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.29
cd03246	173	ABCC_Protease_Secretion This family represents the	97.28
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.28
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.28
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.28
PRK06526	254	transposase; Provisional	97.27
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	97.26
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.26
KOG0062	582	consensus ATPase component of ABC transporters wit	97.26
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.26
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.26
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.25
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.25
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.25
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.24
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.24
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	97.24
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	97.24
PRK06921	266	hypothetical protein; Provisional	97.24
PRK14974	336	cell division protein FtsY; Provisional	97.23
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.23
PTZ00185	574	ATPase alpha subunit; Provisional	97.23
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.23
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.23
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.23
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.22
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.22
PRK13409	590	putative ATPase RIL; Provisional	97.22
PRK08149	428	ATP synthase SpaL; Validated	97.22
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	97.22
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.22
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.21
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.21
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	97.21
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.2
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.2
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.2
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.2
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.2
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.2
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.2
PTZ00035	337	Rad51 protein; Provisional	97.19
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.19
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.19
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.18
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.18
PRK09183	259	transposase/IS protein; Provisional	97.18
PRK05480	209	uridine/cytidine kinase; Provisional	97.18
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.18
TIGR00959	428	ffh signal recognition particle protein. This mode	97.17
PTZ00301	210	uridine kinase; Provisional	97.17
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.16
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.16
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.15
PRK06547	172	hypothetical protein; Provisional	97.15
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.15
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.15
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.15
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.15
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.14
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.14
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.13
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.13
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	97.12
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.12
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.12
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	97.12
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.12
PRK13409	590	putative ATPase RIL; Provisional	97.11
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.11
PRK10867	433	signal recognition particle protein; Provisional	97.11
PRK06067	234	flagellar accessory protein FlaH; Validated	97.11
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	97.11
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.1
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.1
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.1
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	97.1
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.09
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.09
PRK05922	434	type III secretion system ATPase; Validated	97.09
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.09
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.08
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.08
PRK11147	635	ABC transporter ATPase component; Reviewed	97.08
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.08
PRK06936	439	type III secretion system ATPase; Provisional	97.08
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.07
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.07
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.06
PRK07667	193	uridine kinase; Provisional	97.06
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.06
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.06
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.05
PRK06835	329	DNA replication protein DnaC; Validated	97.05
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.05
PRK08233	182	hypothetical protein; Provisional	97.05
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.04
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.04
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.04
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	97.04
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.04
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.04
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.04
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.04
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.03
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.03
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.02
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.02
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.02
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.02
CHL00195	489	ycf46 Ycf46; Provisional	97.02
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.01
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.01
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.01
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.01
PRK04328	249	hypothetical protein; Provisional	97.01
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.0
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.0
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.99
PRK12422	445	chromosomal replication initiation protein; Provis	96.99
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.98
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	96.98
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.97
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	96.96
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.96
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.96
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.94
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	96.94
COG4136	213	ABC-type uncharacterized transport system, ATPase	96.94
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	96.94
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.93
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	96.93
PRK11147	635	ABC transporter ATPase component; Reviewed	96.93
PRK10938	490	putative molybdenum transport ATP-binding protein	96.93
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.93
PRK15455	644	PrkA family serine protein kinase; Provisional	96.93
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.92
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.92
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.92
PRK09099	441	type III secretion system ATPase; Provisional	96.92
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.92
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	96.91
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	96.91
PTZ00088	229	adenylate kinase 1; Provisional	96.91
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	96.91
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.91
PRK09087	226	hypothetical protein; Validated	96.9
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	96.9
PRK06762	166	hypothetical protein; Provisional	96.89
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.89
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.89
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.89
PRK04296	190	thymidine kinase; Provisional	96.89
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.88
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.88
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.87
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	96.87
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	96.87
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.86
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.86
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.86
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.85
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.85
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	96.85
PRK00279	215	adk adenylate kinase; Reviewed	96.85
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.85
PRK14527	191	adenylate kinase; Provisional	96.84
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.84
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.84
PLN03073	718	ABC transporter F family; Provisional	96.84
PRK06217	183	hypothetical protein; Validated	96.83
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.82
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.82
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.82
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	96.81
PRK10536	262	hypothetical protein; Provisional	96.8
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	96.8
PRK12678	672	transcription termination factor Rho; Provisional	96.8
PRK03839	180	putative kinase; Provisional	96.79
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.79
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	96.79
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.79
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	96.78
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.78
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.77
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.77
PRK06820	440	type III secretion system ATPase; Validated	96.77
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.77
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.77
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	96.77
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	96.76
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.76
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.76
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	96.75
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.75
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.75
PRK10865	857	protein disaggregation chaperone; Provisional	96.74
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	96.74
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.73
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	96.72
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.72
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.72
COG4988	559	CydD ABC-type transport system involved in cytochr	96.71
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.71
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	96.71
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.7
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	96.69
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.69
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.68
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.68
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.68
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.68
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.67
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	96.67
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.67
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.66
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.66
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.65
PRK00300	205	gmk guanylate kinase; Provisional	96.65
PRK14737	186	gmk guanylate kinase; Provisional	96.65
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.64
PRK00131	175	aroK shikimate kinase; Reviewed	96.64
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.64
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.64
KOG0927	614	consensus Predicted transporter (ABC superfamily)	96.63
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	96.63
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.63
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.63
PRK04040	188	adenylate kinase; Provisional	96.62
PRK10416	318	signal recognition particle-docking protein FtsY;	96.62
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	96.61
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	96.61
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.6
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	96.6
PRK09519	790	recA DNA recombination protein RecA; Reviewed	96.6
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.6
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.59
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.59
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.59
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	96.59
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.59
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.58
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.58
PRK00889	175	adenylylsulfate kinase; Provisional	96.58
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.58
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.58
CHL00059	485	atpA ATP synthase CF1 alpha subunit	96.57
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.55
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.55
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.55
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	96.54
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.54
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	96.54
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.54
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.54
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.53
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.52
PRK05642	234	DNA replication initiation factor; Validated	96.52
PRK00625	173	shikimate kinase; Provisional	96.52
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.52
CHL00060	494	atpB ATP synthase CF1 beta subunit	96.52
PRK03846	198	adenylylsulfate kinase; Provisional	96.52
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.52
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	96.51
PRK13765	637	ATP-dependent protease Lon; Provisional	96.51
PF14516	331	AAA_35: AAA-like domain	96.51
PRK14532	188	adenylate kinase; Provisional	96.5
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.5
PRK13949	169	shikimate kinase; Provisional	96.49
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	96.49
PLN03130	1622	ABC transporter C family member; Provisional	96.49
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.49
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	96.48
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.47
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.47
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	96.46
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.45
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.45
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.45
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.45
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	96.45
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.44
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.44
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.44
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.44
PRK05057	172	aroK shikimate kinase I; Reviewed	96.44
PRK09825	176	idnK D-gluconate kinase; Provisional	96.44
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.44
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.43
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.43
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.43
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.43
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.43
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.43
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	96.42
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.42
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.42
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.42
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.42
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.41
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.41
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	96.41
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.41
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.41
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.4
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.4
PRK13695	174	putative NTPase; Provisional	96.4
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.4
PRK04196	460	V-type ATP synthase subunit B; Provisional	96.4
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.4
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.39
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.39
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.39
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.39
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.39
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.39
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.39
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.39
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.38
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.38
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.38
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.38
PRK13531	498	regulatory ATPase RavA; Provisional	96.38
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	96.38
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	96.38
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.38
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.37
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.37
COG4152	300	ABC-type uncharacterized transport system, ATPase	96.37
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.36
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	96.35
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.34
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.34
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.34
PRK14528	186	adenylate kinase; Provisional	96.34
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	96.34
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.33
CHL00095	821	clpC Clp protease ATP binding subunit	96.33
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.32
PRK13947	171	shikimate kinase; Provisional	96.32
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.32
PLN03232	1495	ABC transporter C family member; Provisional	96.32
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	96.32
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	96.32
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.31
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	96.31
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.3
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	96.29
PRK14530	215	adenylate kinase; Provisional	96.29
PRK13975	196	thymidylate kinase; Provisional	96.29
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.29
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	96.28
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	96.28
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	96.28
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.28
PRK02118	436	V-type ATP synthase subunit B; Provisional	96.27
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.27
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.27
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	96.26
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.26
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.25
PRK05439	311	pantothenate kinase; Provisional	96.24
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.24
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	96.23
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.23

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-31  Score=255.88  Aligned_cols=253  Identities=25%  Similarity=0.377  Sum_probs=190.5

Q ss_pred             chhhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhh
Q 045699            3 HFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGK   82 (266)
Q Consensus         3 e~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed   82 (266)
                      ++.+++..+.+..++......+.+....+..++++|..|+++++++.+.       ... ...+..|...+++++|++||
T Consensus         2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~~~~e~   73 (889)
T KOG4658|consen    2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLVYLAED   73 (889)
T ss_pred             CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHHHHHHH
Confidence            4556666654455666666667888888888888888887777766553       332 56789999999999999999


Q ss_pred             hHHH-HH---Hh-------------hcccccCCCC-ChhHHhHHHHHHHHHHHHHHHHhhcCCCcccccc-CCCCccccc
Q 045699           83 LIED-EE---KE-------------KKKCLKGLCP-NLMNRYQLSKKAAWEVKAIAGLLEEGKFDEVSFC-TRPEGILLM  143 (266)
Q Consensus        83 ~ld~-~~---~~-------------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~i~~l~~~~~~~~~~~~-~~~~~~~~~  143 (266)
                      +++. ..   ..             ++-|+.+++. +....+.+++++-++...++.+..+..|..+... .|.+....+
T Consensus        74 ~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~  153 (889)
T KOG4658|consen   74 IIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETR  153 (889)
T ss_pred             HHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccC
Confidence            9987 10   00             0112222222 4445567778888888888887776666655432 111112111


Q ss_pred             ccCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          144 CSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-KLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       144 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      +..+... +|.+..++++.+.|.+++..++||+||||+||||||+.++|+.. ++++||.++||+||+.++...++.+|+
T Consensus       154 ~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il  232 (889)
T KOG4658|consen  154 PIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL  232 (889)
T ss_pred             CCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence            1112223 99999999999999887779999999999999999999999988 889999999999999999999999999


Q ss_pred             HHhcC---CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          223 DQLSL---NICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       223 ~~~~~---~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      +.++.   .+......+++..|.+.|+. |||+|||||||+..||+
T Consensus       233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~  277 (889)
T KOG4658|consen  233 ERLGLLDEEWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWD  277 (889)
T ss_pred             HHhccCCcccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHH
Confidence            99887   33344457899999999998 99999999999999987

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.83  E-value=1.8e-20  Score=161.25  Aligned_cols=111  Identities=32%  Similarity=0.478  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--
Q 045699          154 RKSILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI--  229 (266)
Q Consensus       154 r~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~--  229 (266)
                      |+.++++|.++|.+  ++.++|+|+||||+||||||+.++++...+.+|+.++|+.++...+...++..|+.+++...  
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~   80 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS   80 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence            67889999999976  78999999999999999999999999777789999999999999999999999999998863  


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          230 --CEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       230 --~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                        ...+..+....+.+.|.+ ++|||||||||+...|+
T Consensus        81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~  117 (287)
T PF00931_consen   81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLE  117 (287)
T ss_dssp             SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-
T ss_pred             cccccccccccccchhhhcc-ccceeeeeeeccccccc
Confidence              345677889999999998 99999999999987663

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.50  E-value=1.1e-13  Score=139.22  Aligned_cols=113  Identities=20%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             cccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe---CCC-----------
Q 045699          148 YEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV---SRT-----------  211 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v---~~~-----------  211 (266)
                      ..+++|++..++++..+|.  .++.++|+||||||+||||||+.+|+...  .+|+..+|+.-   +..           
T Consensus       183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~  260 (1153)
T PLN03210        183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDD  260 (1153)
T ss_pred             cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccc
Confidence            5678999999999998874  45789999999999999999999999765  67988887631   111           


Q ss_pred             CC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          212 PD-VKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       212 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      ++ ...+++.++.++...... .... ...+++.|.+ ||+||||||||+...|+
T Consensus       261 ~~~~~~l~~~~l~~il~~~~~-~~~~-~~~~~~~L~~-krvLLVLDdv~~~~~l~  312 (1153)
T PLN03210        261 YNMKLHLQRAFLSEILDKKDI-KIYH-LGAMEERLKH-RKVLIFIDDLDDQDVLD  312 (1153)
T ss_pred             cchhHHHHHHHHHHHhCCCCc-ccCC-HHHHHHHHhC-CeEEEEEeCCCCHHHHH
Confidence            11 123444555444221111 1111 1456788888 99999999999876553

syringae 6; Provisional

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.09  E-value=1.9e-09  Score=96.93  Aligned_cols=114  Identities=21%  Similarity=0.160  Sum_probs=87.1

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      +..+.||+.+++.|...+.    +.....+.|+|+.|+|||++++.++++.......-..+++++....+...++..|++
T Consensus        29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~  108 (394)
T PRK00411         29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR  108 (394)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence            4568999999999988873    334567889999999999999999998764332345677777777788899999999


Q ss_pred             HhcC-CC--CCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          224 QLSL-NI--CEGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       224 ~~~~-~~--~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      ++.. ..  ...+..++...+.+.+.. ++..+|||||++..
T Consensus       109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l  150 (394)
T PRK00411        109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL  150 (394)
T ss_pred             HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence            9865 22  233566777778888764 35688999999864

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.03  E-value=7.2e-10  Score=93.07  Aligned_cols=92  Identities=18%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC-CCCCCCHH------HHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT--PDVKRIQGDVADQLSL-NICEGSES------ERA  238 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~-~~~~~~~~------~~~  238 (266)
                      .....++|+|++|+|||||++.+|+..... +|+.++|+++++.  +++.++++.|...+-. ..+.....      ...
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~   92 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL   92 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999998654 8999999998877  7899999988332211 11211111      112


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCC
Q 045699          239 MMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       239 ~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .....+...|++.+|++|++..
T Consensus        93 ~~a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          93 EKAKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHHHCCCCEEEEEECHHH
Confidence            2222223336999999999864

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.02  E-value=4.6e-09  Score=93.48  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CC---CeEEEEEeCCCCCHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VC---DEVVFVEVSRTPDVKRIQG  219 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f---~~~~wv~v~~~~~~~~~~~  219 (266)
                      +..++||+.+++.|..++.    ......+.|+|+.|+|||++++.+++...... ..   -..+|+.+....+...++.
T Consensus        14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~   93 (365)
T TIGR02928        14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV   93 (365)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence            4578999999999988874    34456899999999999999999999764211 11   2456778777778889999


Q ss_pred             HHHHHhc---CCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          220 DVADQLS---LNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       220 ~i~~~~~---~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      .|++++.   ....  ..+..+....+.+.+.. +++++||||+++..
T Consensus        94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L  141 (365)
T TIGR02928        94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL  141 (365)
T ss_pred             HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence            9999983   3222  23455666677777752 36889999999865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.98  E-value=2.7e-09  Score=80.74  Aligned_cols=92  Identities=22%  Similarity=0.342  Sum_probs=69.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL---KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE-GSESERAMMLCGQ  244 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~~  244 (266)
                      +.+.+.|+|..|+|||++++.+.++....   ..-..++|+.++...+...+...|+.+++..... .+..++...+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~   82 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA   82 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence            35688999999999999999999986421   0134577999998889999999999999987665 6678888899999


Q ss_pred             HhcCCeEEEEEeCCCC
Q 045699          245 LKKGKKILFVLDNIWT  260 (266)
Q Consensus       245 L~~~kr~LlvlDDvw~  260 (266)
                      +...+..+||+||+..
T Consensus        83 l~~~~~~~lviDe~~~   98 (131)
T PF13401_consen   83 LDRRRVVLLVIDEADH   98 (131)
T ss_dssp             HHHCTEEEEEEETTHH
T ss_pred             HHhcCCeEEEEeChHh
Confidence            9884556999999753

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.95  E-value=3.4e-09  Score=93.24  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=64.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhcC-CCCCCCHHH-----HHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQLSL-NICEGSESE-----RAM  239 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~-----~~~  239 (266)
                      ......+|+|++|+|||||++.||+....+ +|++++||.+++..  ...+++++|...+-. ..+.....+     ..-
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i  245 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI  245 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999998765 89999999999987  777888887632211 222222221     111


Q ss_pred             HHHHHH-hcCCeEEEEEeCCCC
Q 045699          240 MLCGQL-KKGKKILFVLDNIWT  260 (266)
Q Consensus       240 ~l~~~L-~~~kr~LlvlDDvw~  260 (266)
                      ...+++ ..|++.||++|++..
T Consensus       246 e~Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        246 EKAKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHHHHHcCCCEEEEEEChHH
Confidence            222232 336999999999863

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.91  E-value=3e-08  Score=84.45  Aligned_cols=92  Identities=22%  Similarity=0.221  Sum_probs=63.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH---
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCG---  243 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~---  243 (266)
                      ......+.|+|++|+|||||++.+++......  -..+|+ +....+..+++..|+..++.+....+...+...+..   
T Consensus        40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~--~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~  116 (269)
T TIGR03015        40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER--VVAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI  116 (269)
T ss_pred             hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC--eEEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence            34466899999999999999999999865221  122333 333457788999999998876544443333344433   


Q ss_pred             -HHhcCCeEEEEEeCCCCC
Q 045699          244 -QLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       244 -~L~~~kr~LlvlDDvw~~  261 (266)
                       .+..+++++||+||+|..
T Consensus       117 ~~~~~~~~~vliiDe~~~l  135 (269)
T TIGR03015       117 EQFAAGKRALLVVDEAQNL  135 (269)
T ss_pred             HHHhCCCCeEEEEECcccC
Confidence             333348899999999874

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1e-07  Score=84.46  Aligned_cols=115  Identities=22%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      +..+.+|+.+++++...|.    +....-+-|+|..|.|||+.++.+....+....-..+++|++-...++.+++..|++
T Consensus        16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~   95 (366)
T COG1474          16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN   95 (366)
T ss_pred             cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence            3348899999999987764    334445999999999999999999999764322222899999999999999999999


Q ss_pred             HhcC-CCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCCC
Q 045699          224 QLSL-NICEGSESERAMMLCGQLKK-GKKILFVLDNIWTSL  262 (266)
Q Consensus       224 ~~~~-~~~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~~  262 (266)
                      +++. +....+..+....+.+.+.. ++.++||||++..-.
T Consensus        96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~  136 (366)
T COG1474          96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALV  136 (366)
T ss_pred             HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence            9964 33456677777888888865 588999999987654

>TIGR00767 rho transcription termination factor Rho

Probab=98.78  E-value=4.9e-08  Score=86.36  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=65.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC--CCHHHHHHHHHHHhcC-CCCCCCHH--HH----H
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT--PDVKRIQGDVADQLSL-NICEGSES--ER----A  238 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~--~~~~~~~~~i~~~~~~-~~~~~~~~--~~----~  238 (266)
                      .....++|+|++|+|||||++.+++....+ +|+..+|+.+++.  .++.++++.|+..+-. ..+.....  .+    .
T Consensus       166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~  244 (415)
T TIGR00767       166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI  244 (415)
T ss_pred             CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence            356789999999999999999999987654 8999999999976  7889999998543322 12211111  11    1


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCC
Q 045699          239 MMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       239 ~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .........|++.+|++|++..
T Consensus       245 e~Ae~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       245 EKAKRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHHHHcCCCeEEEEEChhH
Confidence            2222233346999999999863

Members of this family differ in the specificity of RNA binding.

>PTZ00202 tuzin; Provisional

Probab=98.72  E-value=3e-07  Score=81.89  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             cCCcccccchHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          145 SEGYEAFESRKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      |.+...|+||+.++..|...|.+   ....++.|.|++|+|||||++.+.....      ..+++.-+.  +..++++.|
T Consensus       258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~L  329 (550)
T PTZ00202        258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRSV  329 (550)
T ss_pred             CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHHH
Confidence            33466899999999999888853   2346899999999999999999997653      113333333  679999999


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHh----c-CCeEEEEE
Q 045699          222 ADQLSLNICEGSESERAMMLCGQLK----K-GKKILFVL  255 (266)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~l~~~L~----~-~kr~Llvl  255 (266)
                      +.+||.+.. ....++...|.+.|.    . |++.+||+
T Consensus       330 L~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII  367 (550)
T PTZ00202        330 VKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVL  367 (550)
T ss_pred             HHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            999997322 222344444444432    2 46777765

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.68  E-value=8.8e-08  Score=76.61  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             ccchHHHHHHHHHHh---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699          151 FESRKSILNDALDAL---SNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL  197 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  197 (266)
                      |+||+.+++.+...+   .....+.+.|+|+.|+|||+|.+.++......
T Consensus         2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            789999999999998   24557999999999999999999999987754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.68  E-value=2.8e-07  Score=70.16  Aligned_cols=58  Identities=22%  Similarity=0.320  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 045699          153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP  212 (266)
Q Consensus       153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~  212 (266)
                      |++..+..+...+.......+.|+|+.|+|||||++.+++...  ..-...+++..++..
T Consensus         2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~   59 (151)
T cd00009           2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL   59 (151)
T ss_pred             chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence            5677788888887766678999999999999999999999874  112345566655443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.62  E-value=5.2e-08  Score=80.65  Aligned_cols=45  Identities=31%  Similarity=0.332  Sum_probs=37.9

Q ss_pred             ccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          151 FESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |+||+.+++.|.+++.......+.|+|+.|+|||+|++.+.+..+
T Consensus         1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~   45 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK   45 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence            689999999999998776789999999999999999999999864

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF05729 NACHT: NACHT domain

Probab=98.54  E-value=3.5e-07  Score=71.65  Aligned_cols=87  Identities=25%  Similarity=0.321  Sum_probs=53.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVK---RIQGDVADQLSLNICEGSESERAMMLCG  243 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~l~~  243 (266)
                      +++.|+|.+|+||||+++.+.........    +...+|.+........   .+...|..+......  ....   .+..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~---~~~~   75 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--PIEE---LLQE   75 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--hhHH---HHHH
Confidence            47899999999999999999998765443    3456666665544332   333333333322111  1111   2333


Q ss_pred             HHhcCCeEEEEEeCCCCCC
Q 045699          244 QLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       244 ~L~~~kr~LlvlDDvw~~~  262 (266)
                      .+...++++||||++.+..
T Consensus        76 ~~~~~~~~llilDglDE~~   94 (166)
T PF05729_consen   76 LLEKNKRVLLILDGLDELE   94 (166)
T ss_pred             HHHcCCceEEEEechHhcc
Confidence            3333499999999987654

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.46  E-value=1.2e-06  Score=78.85  Aligned_cols=108  Identities=17%  Similarity=0.142  Sum_probs=71.6

Q ss_pred             ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699          149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~  228 (266)
                      .+++..+..++.+...|..  .+.+.++|++|+|||++|+.+++......+|+.+.||++++.++..+++..+.-. +..
T Consensus       175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg  251 (459)
T PRK11331        175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG  251 (459)
T ss_pred             hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence            3456667778888888763  5678889999999999999999987655678889999999999887765422100 001


Q ss_pred             CCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          229 ICEGSESERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       229 ~~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      ..-.+ .-....+....++ +++|+||+|++-.
T Consensus       252 y~~~~-G~f~~~~~~A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        252 FRRKD-GIFYNFCQQAKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             eEecC-chHHHHHHHHHhcccCCcEEEEehhhc
Confidence            10000 1112223333322 3789999999854

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.41  E-value=8.1e-07  Score=80.46  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             CCcccccchHHHHHH---HHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILND---ALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..+..   +.+++.......+.++|++|+||||||+.+.+...
T Consensus         9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~   61 (413)
T PRK13342          9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD   61 (413)
T ss_pred             CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            345678888777655   77777777778899999999999999999998754

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.34  E-value=9.7e-06  Score=77.90  Aligned_cols=114  Identities=16%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             cccccchHHHHHHHHHHhC----CCC-CcEEEEEcCCCCcHHHHHHHHHHHhccc---cCCC--eEEEEEeCCCCCHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPN-VDVIGLCGVGGIGKTTLAKIVCDQAKKL---KVCD--EVVFVEVSRTPDVKRI  217 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~~f~--~~~wv~v~~~~~~~~~  217 (266)
                      +..+.+|+.+.+.|...|.    ... ..++-|+|+.|.|||+.++.|.......   ....  .+++|.+..-.++..+
T Consensus       754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI  833 (1164)
T PTZ00112        754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA  833 (1164)
T ss_pred             CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence            3457899999999988774    222 3567899999999999999998876421   1222  3567777777788889


Q ss_pred             HHHHHHHhcCCCC--CCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699          218 QGDVADQLSLNIC--EGSESERAMMLCGQLKK--GKKILFVLDNIWTS  261 (266)
Q Consensus       218 ~~~i~~~~~~~~~--~~~~~~~~~~l~~~L~~--~kr~LlvlDDvw~~  261 (266)
                      ...|.+++.....  ..+..+....+...+..  +...+||||||...
T Consensus       834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L  881 (1164)
T PTZ00112        834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL  881 (1164)
T ss_pred             HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence            9999998854322  23344555566665532  13458999998754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.24  E-value=6e-06  Score=69.27  Aligned_cols=94  Identities=27%  Similarity=0.455  Sum_probs=61.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC--------------eEEEEEeCCC-------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD--------------EVVFVEVSRT-------------------  211 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~--------------~~~wv~v~~~-------------------  211 (266)
                      +.-.+++|+|++|+|||||.+.++.-.+.+.   ..+              ..+++  +|.                   
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v--pQ~~~~~~~~tV~d~V~~GR~p  103 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV--PQSPSAPFGLTVYELVLLGRYP  103 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe--ccCCCCCCCcEEeehHhhcCCc
Confidence            4578999999999999999999988544221   000              11222  111                   


Q ss_pred             -------CC--HHHHHHHHHHHhcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          212 -------PD--VKRIQGDVADQLSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       212 -------~~--~~~~~~~i~~~~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                             ++  -.++....++.++.      .+...|..+++ ..+...|.+ +.=+|+||+..+.+|+
T Consensus       104 ~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-~~~iLLLDEPTs~LDi  171 (258)
T COG1120         104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-ETPILLLDEPTSHLDI  171 (258)
T ss_pred             ccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-CCCEEEeCCCccccCH
Confidence                   11  12244455666655      45566766655 456778887 8889999999999885

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.23  E-value=7.4e-06  Score=71.88  Aligned_cols=93  Identities=18%  Similarity=0.303  Sum_probs=56.2

Q ss_pred             cCCcccccchHHHH---HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          145 SEGYEAFESRKSIL---NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       145 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      |....+++|.+..+   ..|-+.+...++...-.||++|+||||||+.+.....  ..     +..+|...+-.+=++.|
T Consensus        20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdlr~i   92 (436)
T COG2256          20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDLREI   92 (436)
T ss_pred             CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHHHHH
Confidence            33455566655433   3344445567888999999999999999999998654  23     33444433322222333


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          222 ADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ++.                -++.+..|++.+|+||+|..
T Consensus        93 ~e~----------------a~~~~~~gr~tiLflDEIHR  115 (436)
T COG2256          93 IEE----------------ARKNRLLGRRTILFLDEIHR  115 (436)
T ss_pred             HHH----------------HHHHHhcCCceEEEEehhhh
Confidence            321                11222224899999998864

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.20  E-value=1.2e-05  Score=60.44  Aligned_cols=91  Identities=24%  Similarity=0.193  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK  249 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k  249 (266)
                      ...+.|+|+.|+||||+++.+........  ...+++..+........... ...................+....+..+
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence            35789999999999999999998765321  23555555443322222111 1111112222233334445555555413


Q ss_pred             eEEEEEeCCCCCCC
Q 045699          250 KILFVLDNIWTSLD  263 (266)
Q Consensus       250 r~LlvlDDvw~~~~  263 (266)
                      ..+|++|++.....
T Consensus        79 ~~viiiDei~~~~~   92 (148)
T smart00382       79 PDVLILDEITSLLD   92 (148)
T ss_pred             CCEEEEECCcccCC
Confidence            38999999987654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08118 topology modulation protein; Reviewed

Probab=98.19  E-value=9.2e-07  Score=70.01  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccc-cCCCeEEE
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKL-KVCDEVVF  205 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~f~~~~w  205 (266)
                      ..|.|+|++|+||||||+.+++..... -+||..+|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            468999999999999999999997654 36787774

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.15  E-value=2.5e-05  Score=77.57  Aligned_cols=105  Identities=16%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS-RTPDVKRIQGDVADQLS  226 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~  226 (266)
                      ..+++.|....+.+-.   ....+++.|.|++|.||||++......      +..++|+++. .+.++..+...++..++
T Consensus        13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~   83 (903)
T PRK04841         13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ   83 (903)
T ss_pred             ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence            3456667655544432   245789999999999999999998753      2368999996 45567777788887774


Q ss_pred             CCCCC--------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          227 LNICE--------------GSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       227 ~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      .....              .+...+...+...|.. +.+++|||||+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~  133 (903)
T PRK04841         84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI  133 (903)
T ss_pred             HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC
Confidence            21100              1222334444444442 38999999998653

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.13  E-value=1.3e-05  Score=69.57  Aligned_cols=80  Identities=29%  Similarity=0.370  Sum_probs=54.3

Q ss_pred             HHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 045699          162 LDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMML  241 (266)
Q Consensus       162 ~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l  241 (266)
                      .+.+..+.+..+-+||+.|+||||||+.+.+..+...    ..+|..|....-..=.+.|+++-..             .
T Consensus       154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~-------------~  216 (554)
T KOG2028|consen  154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN-------------E  216 (554)
T ss_pred             HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH-------------H
Confidence            3344567889999999999999999999999876332    5677777765555445555543311             1


Q ss_pred             HHHHhcCCeEEEEEeCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~  260 (266)
                       ..+-. +|-+|++|+|..
T Consensus       217 -~~l~k-rkTilFiDEiHR  233 (554)
T KOG2028|consen  217 -KSLTK-RKTILFIDEIHR  233 (554)
T ss_pred             -Hhhhc-ceeEEEeHHhhh
Confidence             12223 788888888753

>PRK12608 transcription termination factor Rho; Provisional

Probab=98.12  E-value=4.4e-05  Score=67.36  Aligned_cols=101  Identities=13%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             HHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-EEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCC-H
Q 045699          159 NDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-VVFVEVSR-TPDVKRIQGDVADQLSLNICEGS-E  234 (266)
Q Consensus       159 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~-~~~~~~~~~~i~~~~~~~~~~~~-~  234 (266)
                      .++++.+.. .....+.|+|..|+|||||++.+.+..... +-+. ++|+.+.+ ...+.++.+.++..+.....+.+ .
T Consensus       121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~  199 (380)
T PRK12608        121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD  199 (380)
T ss_pred             HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence            346666653 455788999999999999999998876532 3344 57777775 45677888888887765432222 1


Q ss_pred             H-----HHHHHHHHHHh-cCCeEEEEEeCCCC
Q 045699          235 S-----ERAMMLCGQLK-KGKKILFVLDNIWT  260 (266)
Q Consensus       235 ~-----~~~~~l~~~L~-~~kr~LlvlDDvw~  260 (266)
                      .     +....+.+++. .|++.+||+|++..
T Consensus       200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr  231 (380)
T PRK12608        200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR  231 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence            1     12223333443 36999999999863

>PF13173 AAA_14: AAA domain

Probab=98.10  E-value=4.6e-06  Score=62.94  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK  249 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k  249 (266)
                      .+++.|.|+-|+|||||++.++.+..   .....+|++...........                .+....+.+.... +
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~   61 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIKP-G   61 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhcc-C
Confidence            46899999999999999999998754   23456666655443211100                0022333333444 6


Q ss_pred             eEEEEEeCCCCCCCCC
Q 045699          250 KILFVLDNIWTSLDLE  265 (266)
Q Consensus       250 r~LlvlDDvw~~~~~~  265 (266)
                      ..+|+||+|-..-+|.
T Consensus        62 ~~~i~iDEiq~~~~~~   77 (128)
T PF13173_consen   62 KKYIFIDEIQYLPDWE   77 (128)
T ss_pred             CcEEEEehhhhhccHH
Confidence            7788899987776653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.09  E-value=6.2e-05  Score=64.36  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699          156 SILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC----DEVVFVEVSRTPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       156 ~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~~~~~  228 (266)
                      +.++.|-+++..   ....-+.|||.+|.|||++++...........-    -.++.|..+..++...+...|+.+++.+
T Consensus        44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            344555555542   345779999999999999999998874322111    1477888899999999999999999997


Q ss_pred             CCC-CCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699          229 ICE-GSESERAMMLCGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       229 ~~~-~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~  262 (266)
                      ... .+...+.......|+.-+-=+||+|++-+..
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL  158 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL  158 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence            653 3344555555555554344488999987643

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.08  E-value=2.9e-05  Score=67.42  Aligned_cols=106  Identities=15%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      ..+|+|++..++.|..++.     ......+.++|+.|+|||+||+.+.+....  .|   ..+..+....... +...+
T Consensus         3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~-l~~~l   76 (305)
T TIGR00635         3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGD-LAAIL   76 (305)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchh-HHHHH
Confidence            3468999999998888774     234567889999999999999999987652  11   1222221112222 23334


Q ss_pred             HHhcCCC-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699          223 DQLSLNI-------CEGSESERAMMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       223 ~~~~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      ..++...       ...+. .....+...+.+ .+..+|+++-.+.
T Consensus        77 ~~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~-~~~~~v~~~~~~~  120 (305)
T TIGR00635        77 TNLEEGDVLFIDEIHRLSP-AVEELLYPAMED-FRLDIVIGKGPSA  120 (305)
T ss_pred             HhcccCCEEEEehHhhhCH-HHHHHhhHHHhh-hheeeeeccCccc
Confidence            4443311       11221 234456777777 7777888875543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK07261 topology modulation protein; Provisional

Probab=98.08  E-value=1.9e-05  Score=62.76  Aligned_cols=50  Identities=24%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcccc-CCCeEEEEEeCCCCCHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      .|.|+|++|+||||||+.+........ +.|...|-.-....+..++...+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~   52 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADI   52 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHH
Confidence            589999999999999999987654322 45666665433333444444433

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.01  E-value=3.6e-05  Score=67.62  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=42.3

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+.+++..+....+.++|+.|+||||+|+.+.+...
T Consensus        13 ~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         13 LLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             cHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567889999999999988777767789999999999999999988764

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.00  E-value=2.2e-05  Score=64.33  Aligned_cols=51  Identities=22%  Similarity=0.386  Sum_probs=36.5

Q ss_pred             cCCcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....+|+|.+..+..+.-++.     ...+..+-.||++|+||||||+.+.+...
T Consensus        20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~   75 (233)
T PF05496_consen   20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG   75 (233)
T ss_dssp             -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred             CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence            4457789999888877654432     34688999999999999999999999876

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.00  E-value=3.1e-05  Score=75.99  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=41.6

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++||+.+++.+++.|......-+.++|++|+|||++|+.+.....
T Consensus       178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~  225 (821)
T CHL00095        178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV  225 (821)
T ss_pred             CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999866666778999999999999999988753

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.00  E-value=2.1e-05  Score=65.06  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      +.+..++.+.+++.......+.|+|+.|+|||+||+.+++....  .....++++++.
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~   76 (226)
T TIGR03420        21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAE   76 (226)
T ss_pred             CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHH
Confidence            34556777777765566789999999999999999999988642  233455665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.96  E-value=2.3e-05  Score=65.28  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      .-.++|+|..|+|||||...+.....  +.|.++.+++-
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~   49 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP   49 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence            45788999999999999999988755  67877766644

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.94  E-value=9.2e-05  Score=64.72  Aligned_cols=112  Identities=17%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCC---cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSNPNV---DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ  224 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~  224 (266)
                      ..++.+|+.++..+..++.+...   ..+-|+|..|.|||.+.+.+++...     -..+|+++-..++...++..|+.+
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~   79 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNK   79 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHH
Confidence            34678899999999998875432   3457899999999999999999874     246799999999999999999999


Q ss_pred             hcC-CCCCCCH----H---HHHHHHHH--HHhc-CCeEEEEEeCCCCCCCC
Q 045699          225 LSL-NICEGSE----S---ERAMMLCG--QLKK-GKKILFVLDNIWTSLDL  264 (266)
Q Consensus       225 ~~~-~~~~~~~----~---~~~~~l~~--~L~~-~kr~LlvlDDvw~~~~~  264 (266)
                      .+. +.++...    +   .....+.+  ...+ ++.++||||++..--|.
T Consensus        80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~  130 (438)
T KOG2543|consen   80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM  130 (438)
T ss_pred             hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc
Confidence            963 2111111    1   11222222  1222 36899999998765554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.94  E-value=6.8e-05  Score=72.78  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=42.1

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++++||+.+++.+++.|......-+.++|++|+|||++|+.+.....
T Consensus       181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~  228 (731)
T TIGR02639       181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIA  228 (731)
T ss_pred             CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            457899999999999988776667778999999999999999998763

>PRK04195 replication factor C large subunit; Provisional

Probab=97.93  E-value=4.7e-05  Score=70.42  Aligned_cols=49  Identities=16%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             CcccccchHHHHHHHHHHhCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSN----PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+|+..    ...+.+.|+|+.|+||||+|+.+.+...
T Consensus        12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195         12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            356789999999999888752    2268899999999999999999999763

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.93  E-value=0.0001  Score=64.72  Aligned_cols=106  Identities=14%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      ...+|+|++..++.+..++.     ......+.++|+.|+||||||+.+.+.....  +   .++..+. .....-+..+
T Consensus        23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~   96 (328)
T PRK00080         23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAI   96 (328)
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHH
Confidence            46679999999988876663     2346788999999999999999999986521  1   1122211 1222233445


Q ss_pred             HHHhcCCC-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          222 ADQLSLNI-------CEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       222 ~~~~~~~~-------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      +..++...       +..+. .....+...+.+ .+..+++|+-.+
T Consensus        97 l~~l~~~~vl~IDEi~~l~~-~~~e~l~~~~e~-~~~~~~l~~~~~  140 (328)
T PRK00080         97 LTNLEEGDVLFIDEIHRLSP-VVEEILYPAMED-FRLDIMIGKGPA  140 (328)
T ss_pred             HHhcccCCEEEEecHhhcch-HHHHHHHHHHHh-cceeeeeccCcc
Confidence            55443311       11121 123345667776 777777776443

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.92  E-value=5e-05  Score=73.07  Aligned_cols=51  Identities=31%  Similarity=0.467  Sum_probs=40.1

Q ss_pred             cCCcccccchHHHHH---HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILN---DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....+++|.+..+.   .+.+.+...+...+.++|++|+||||||+.+++...
T Consensus        24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            334567888877663   466666667788889999999999999999998754

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.92  E-value=4e-05  Score=72.76  Aligned_cols=63  Identities=32%  Similarity=0.477  Sum_probs=47.2

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC---eEEEEEeC
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD---EVVFVEVS  209 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~  209 (266)
                      +...++|++..+..+.+.+.......+.|+|++|+||||||+.+++..+....+.   ..-|+.+.
T Consensus       152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~  217 (615)
T TIGR02903       152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD  217 (615)
T ss_pred             cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence            3556888888888888777666677899999999999999999998865433332   23455554

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.91  E-value=2.5e-05  Score=58.63  Aligned_cols=23  Identities=43%  Similarity=0.491  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |.|+|+.|+||||+|+.+.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            56899999999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN03025 replication factor C subunit; Provisional

Probab=97.91  E-value=0.00012  Score=64.18  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=41.3

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|.+..++.|.+++...+...+-++|+.|+||||+|+.+.+..
T Consensus        10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456788888888888888777777778899999999999999998875

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=0.00021  Score=64.04  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=80.9

Q ss_pred             cCCcccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699          145 SEGYEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD  220 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~  220 (266)
                      +.++..+.||+.+...+.+|+.    .+..+-+-|.|-.|.|||.+...++.+......=-+++++++..-.....++..
T Consensus       146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k  225 (529)
T KOG2227|consen  146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK  225 (529)
T ss_pred             cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence            3345678999999988888774    356788999999999999999999998753222235677877665567788888


Q ss_pred             HHHHhcCC-CCCCCHHHHHHHHHHHHhcCC-eEEEEEeCCCC
Q 045699          221 VADQLSLN-ICEGSESERAMMLCGQLKKGK-KILFVLDNIWT  260 (266)
Q Consensus       221 i~~~~~~~-~~~~~~~~~~~~l~~~L~~~k-r~LlvlDDvw~  260 (266)
                      |...+-.. .......+....+..+....+ -||+|||++..
T Consensus       226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~  267 (529)
T KOG2227|consen  226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH  267 (529)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhH
Confidence            88777221 112223445556666665423 68999998754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.86  E-value=0.0001  Score=68.44  Aligned_cols=97  Identities=24%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c-----CCCeEEEEEeCC---------------CC-C-HHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K-----VCDEVVFVEVSR---------------TP-D-VKRIQGDVADQ  224 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~-----~f~~~~wv~v~~---------------~~-~-~~~~~~~i~~~  224 (266)
                      ..-..|+|+|++|+|||||.+.+....... +     .--...|+.-..               .+ + ...-.+..+.+
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~  425 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR  425 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence            456789999999999999999997764321 1     001112221111               01 1 12334445555


Q ss_pred             hcC-------CCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          225 LSL-------NICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       225 ~~~-------~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      ++.       .....|..+..+. |...+-. +..+||||+..|++|.+
T Consensus       426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~pNvLiLDEPTNhLDi~  473 (530)
T COG0488         426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ-PPNLLLLDEPTNHLDIE  473 (530)
T ss_pred             cCCChHHHhCchhhcCHhHHHHHHHHHHhcc-CCCEEEEcCCCccCCHH
Confidence            544       2334566666555 4455555 99999999999999875

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.84  E-value=0.00022  Score=62.06  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=42.9

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|++..++.+..++.......+.++|+.|+||||+++.+.+...
T Consensus        14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            34566889999999999998776677789999999999999999998864

>PRK06893 DNA replication initiation factor; Validated

Probab=97.83  E-value=7.4e-05  Score=62.24  Aligned_cols=39  Identities=18%  Similarity=0.207  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS  209 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~  209 (266)
                      ....+.++|+.|+|||+|++.+.+....+  ...+.|+++.
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~   76 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS   76 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence            34578999999999999999999986432  2345666664

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.81  E-value=0.00014  Score=67.18  Aligned_cols=48  Identities=27%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+-+.++|+.|+|||++|+.+++...
T Consensus       181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            4557788888877766542    1         2345688999999999999999999865

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.80  E-value=0.00011  Score=61.52  Aligned_cols=92  Identities=24%  Similarity=0.367  Sum_probs=60.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CC----------CeEEEEEeCCCC--------CH------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VC----------DEVVFVEVSRTP--------DV------------  214 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f----------~~~~wv~v~~~~--------~~------------  214 (266)
                      .-..++|+|++|.|||||.+.+..-.+...    .|          ..+.||  +|..        +.            
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV--PQ~~~~d~~fP~tV~d~V~~g~~~~~  106 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV--PQKSSVDRSFPITVKDVVLLGRYGKK  106 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc--CcccccCCCCCcCHHHHHHccCcccc
Confidence            458999999999999999999988543111    11          123444  3311        11            


Q ss_pred             ----------HHHHHHHHHHhcC------CCCCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          215 ----------KRIQGDVADQLSL------NICEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       215 ----------~~~~~~i~~~~~~------~~~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                                .+...+.+++++.      .+...|..+.++ .|.+.|.+ +.=|++||+...-.|
T Consensus       107 g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~-~p~lllLDEP~~gvD  171 (254)
T COG1121         107 GWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ-NPDLLLLDEPFTGVD  171 (254)
T ss_pred             cccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc-CCCEEEecCCcccCC
Confidence                      2344556666655      345667655554 46778888 899999999887766

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.80  E-value=0.00025  Score=60.19  Aligned_cols=91  Identities=22%  Similarity=0.360  Sum_probs=59.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC-CeEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHH--
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC-DEVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSES--  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f-~~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~--  235 (266)
                      .+-..++|+|..|+|||||++.+++..+.  +| +.++++.+.+... ..++.+++...-..        ..+.....  
T Consensus        67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~  144 (274)
T cd01133          67 AKGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA  144 (274)
T ss_pred             ccCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence            35688999999999999999999998763  34 5667777776543 34555555443211        11111111  


Q ss_pred             ---HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          236 ---ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       236 ---~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                         .....+.+++++  |+..||++||+..
T Consensus       145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr  174 (274)
T cd01133         145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR  174 (274)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence               223445677742  5999999999864

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.77  E-value=0.00015  Score=71.25  Aligned_cols=48  Identities=19%  Similarity=0.241  Sum_probs=42.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++||+.++..+++.|......-+.++|++|+||||+|+.+.....
T Consensus       186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~  233 (852)
T TIGR03345       186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA  233 (852)
T ss_pred             CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence            567899999999999998877677778999999999999999998753

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.75  E-value=0.00029  Score=58.68  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      .-.++.|+|.+|+|||+|+..+.-.......    ...++|++....++..++. +++++.+...          ...+.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~   96 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS   96 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence            4689999999999999999999754322111    3678999988877766543 4444443311          11122


Q ss_pred             H---HHHHHHHHHHhcC-CeEEEEEeCCCC
Q 045699          235 S---ERAMMLCGQLKKG-KKILFVLDNIWT  260 (266)
Q Consensus       235 ~---~~~~~l~~~L~~~-kr~LlvlDDvw~  260 (266)
                      .   .....+...+.+. +--|||+|-+..
T Consensus        97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123          97 DHQLQLLEELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence            2   3344556666664 677999998864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.75  E-value=0.00058  Score=65.35  Aligned_cols=105  Identities=21%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             cccccchHHHHHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQL  225 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~  225 (266)
                      ..+.+-|..    |++.|.+ .+.+.+.|..|.|.|||||+-......   ..-..+.|.+++. +.++..++..++.++
T Consensus        18 ~~~~v~R~r----L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al   90 (894)
T COG2909          18 PDNYVVRPR----LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAAL   90 (894)
T ss_pred             cccccccHH----HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence            445555654    4444443 478999999999999999999998732   2345789999975 567889999999988


Q ss_pred             cCCCCC--------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          226 SLNICE--------------GSESERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       226 ~~~~~~--------------~~~~~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      +...+.              .+...+...+..-|.+ .+++++||||--
T Consensus        91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyH  139 (894)
T COG2909          91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYH  139 (894)
T ss_pred             HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccc
Confidence            752221              1233455555555554 468999999964

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.74  E-value=9.3e-05  Score=62.09  Aligned_cols=92  Identities=22%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE------eCCCCCHHHHHHHHHHHhcCCC-------CCCCH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE------VSRTPDVKRIQGDVADQLSLNI-------CEGSE  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~------v~~~~~~~~~~~~i~~~~~~~~-------~~~~~  234 (266)
                      ....+++|||.+|+|||||++.+..-.+..   ...++..      .+ .....+-..+++..++...       ...+.
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG  112 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSG  112 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence            457899999999999999999998865422   2233222      11 1223344556777776621       23454


Q ss_pred             HHHHH-HHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          235 SERAM-MLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       235 ~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .+++. .+...|.- +.=|||.|+.-+.+|.
T Consensus       113 GQrQRi~IARALal-~P~liV~DEpvSaLDv  142 (268)
T COG4608         113 GQRQRIGIARALAL-NPKLIVADEPVSALDV  142 (268)
T ss_pred             hhhhhHHHHHHHhh-CCcEEEecCchhhcch
Confidence            44443 46777877 8889999998887663

>PRK08727 hypothetical protein; Validated

Probab=97.74  E-value=0.00017  Score=60.23  Aligned_cols=51  Identities=24%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699          157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS  209 (266)
Q Consensus       157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~  209 (266)
                      .+..+...........+.|+|..|+|||+|++.+++....+  ....+|+++.
T Consensus        28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~   78 (233)
T PRK08727         28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQ   78 (233)
T ss_pred             HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHH
Confidence            33333333333445679999999999999999999886532  3355666644

>PHA00729 NTP-binding motif containing protein

Probab=97.72  E-value=0.00014  Score=59.91  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          160 DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       160 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+++-+.......|.|.|.+|+||||||..+.+..
T Consensus         7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729          7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455555566789999999999999999998875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.72  E-value=0.00019  Score=57.32  Aligned_cols=28  Identities=43%  Similarity=0.601  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||++.+..-..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3567999999999999999999988643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00082  Score=63.28  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=62.0

Q ss_pred             cccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      .++-.|.++.+++|++++.      +.+.++++.+|++|+|||++++.|......  .|.   -++|+.-.+..+|-..=
T Consensus       410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kFf---RfSvGG~tDvAeIkGHR  484 (906)
T KOG2004|consen  410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KFF---RFSVGGMTDVAEIKGHR  484 (906)
T ss_pred             cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ceE---EEeccccccHHhhcccc
Confidence            3455788899999998873      346799999999999999999999998752  222   23455555554432110


Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          222 ADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      -.    ....++.  ..-...+..+. .+-|++||+|..
T Consensus       485 RT----YVGAMPG--kiIq~LK~v~t-~NPliLiDEvDK  516 (906)
T KOG2004|consen  485 RT----YVGAMPG--KIIQCLKKVKT-ENPLILIDEVDK  516 (906)
T ss_pred             ee----eeccCCh--HHHHHHHhhCC-CCceEEeehhhh
Confidence            00    1112221  11112223334 667888888865

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.00019  Score=59.21  Aligned_cols=95  Identities=28%  Similarity=0.401  Sum_probs=56.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-------c-----------CCCeE--EEEEeCCCCC----HHHH------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-------K-----------VCDEV--VFVEVSRTPD----VKRI------  217 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-------~-----------~f~~~--~wv~v~~~~~----~~~~------  217 (266)
                      ....+++|+|..|+|||||++.+..-.+..       +           .|..+  +|=.-....+    ..++      
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~  110 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR  110 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence            456899999999999999999996543211       0           11111  2221122222    2222      


Q ss_pred             ----------HHHHHHHhcCC-------CCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCC
Q 045699          218 ----------QGDVADQLSLN-------ICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       218 ----------~~~i~~~~~~~-------~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                                ..+++.+++.+       ....|..++++. +.+.|.- +.=+||+|+..+.+|
T Consensus       111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~-~PklLIlDEptSaLD  173 (252)
T COG1124         111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP-EPKLLILDEPTSALD  173 (252)
T ss_pred             cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc-CCCEEEecCchhhhc
Confidence                      23455555552       234565555543 6777777 788999999988766

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.71  E-value=0.00021  Score=69.41  Aligned_cols=50  Identities=22%  Similarity=0.418  Sum_probs=42.6

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcEE-EEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDVI-GLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi-~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++..+++... .++|+.|+||||+|+.+.+...
T Consensus        13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            3467789999999999998887777664 8999999999999999998864

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.71  E-value=0.0003  Score=57.53  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHh----cCC---CCCCCH---HHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQL----SLN---ICEGSE---SERA  238 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~----~~~---~~~~~~---~~~~  238 (266)
                      ...++-|+|++|+|||+++..+.....  .....++|+.... +++..+.+ ++.+.    ...   ....+.   .+..
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence            468999999999999999999877654  2356889999876 66665543 33322    111   011122   2235


Q ss_pred             HHHHHHHhcCCeEEEEEeCCCC
Q 045699          239 MMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       239 ~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ..+...+.+++.-+||+|-+..
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~  108 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTA  108 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHH
Confidence            5555566543456899998754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.70  E-value=0.00028  Score=69.55  Aligned_cols=48  Identities=17%  Similarity=0.260  Sum_probs=42.1

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++||+.+++.+++.|.......+.++|++|+|||++|+.+.....
T Consensus       177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~  224 (857)
T PRK10865        177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII  224 (857)
T ss_pred             CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence            467899999999999999876666777999999999999999988753

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.70  E-value=0.00029  Score=65.26  Aligned_cols=50  Identities=20%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...+++|.+..++.|..++...++. .+.++|+.|+||||+|+.+.+....
T Consensus        12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3567899999889998888766654 4599999999999999999888754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00049  Score=55.92  Aligned_cols=94  Identities=17%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE-------------------eCCCCC---------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE-------------------VSRTPD---------------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~-------------------v~~~~~---------------  213 (266)
                      ....|+.|+|++|+|||||.+.+..-....   ...+|+.                   |=|.|+               
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap  102 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP  102 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence            457899999999999999999997653322   3344441                   112221               


Q ss_pred             ----------HHHHHHHHHHHhcCC-----C-CCCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          214 ----------VKRIQGDVADQLSLN-----I-CEGSE-SERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       214 ----------~~~~~~~i~~~~~~~-----~-~~~~~-~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                                .++...+++..++..     + ...|. ++..-.|.+.|.- +.-++++|++.+.+|.|
T Consensus       103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM-~P~vmLFDEPTSALDPE  170 (240)
T COG1126         103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM-DPKVMLFDEPTSALDPE  170 (240)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC-CCCEEeecCCcccCCHH
Confidence                      334444556666552     1 23343 3334457888887 88899999999998854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.68  E-value=0.00015  Score=65.29  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=37.8

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|++..+++|.+.+.    .         ...+-|.++|++|+|||++|+.+++...
T Consensus       130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~  190 (389)
T PRK03992        130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN  190 (389)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence            4567899988888877542    1         2346689999999999999999999764

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00023  Score=65.70  Aligned_cols=92  Identities=17%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             cccccchHHHHHHHHHHhC---CC---------CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699          148 YEAFESRKSILNDALDALS---NP---------NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK  215 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  215 (266)
                      ..++.|.+..+.+|.+++.   .+         ..+=+.++|+.|||||.||+.+.+...+-       ++.++.+    
T Consensus       189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp----  257 (802)
T KOG0733|consen  189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP----  257 (802)
T ss_pred             hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence            4456788877777766542   21         24557899999999999999999987642       3344432    


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          216 RIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                          +|+...    .+.++..+.....+.... -.|++++||+.
T Consensus       258 ----eivSGv----SGESEkkiRelF~~A~~~-aPcivFiDeID  292 (802)
T KOG0733|consen  258 ----EIVSGV----SGESEKKIRELFDQAKSN-APCIVFIDEID  292 (802)
T ss_pred             ----hhhccc----CcccHHHHHHHHHHHhcc-CCeEEEeeccc
Confidence                222222    233444443444445555 88999999875

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.66  E-value=9.4e-05  Score=65.97  Aligned_cols=48  Identities=27%  Similarity=0.367  Sum_probs=38.0

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|++..++.|.+.+.    .         ...+-+.++|++|+|||+||+.+++...
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            4567899998888877652    1         1245689999999999999999999764

Many proteins may score above the trusted cutoff because an internal

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.66  E-value=0.00045  Score=55.09  Aligned_cols=88  Identities=22%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc-c--cc---CCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK-K--LK---VCDEVVFVEVSRTPDVKRIQGDVADQLSLN-------ICEGSE  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~--~~---~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-------~~~~~~  234 (266)
                      ..-.+++|+|++|+|||||.+.+..+.. +  ..   .|...-...+.+        .+.+..++..       ....+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSg   90 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSG   90 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence            3567999999999999999999964311 1  00   111101112222        3556666542       122343


Q ss_pred             HH-HHHHHHHHHhcCC--eEEEEEeCCCCCCCC
Q 045699          235 SE-RAMMLCGQLKKGK--KILFVLDNIWTSLDL  264 (266)
Q Consensus       235 ~~-~~~~l~~~L~~~k--r~LlvlDDvw~~~~~  264 (266)
                      .+ ..-.+...|-. +  .=+++||+..+..|.
T Consensus        91 Gq~qrl~laral~~-~~~p~llLlDEPt~~LD~  122 (176)
T cd03238          91 GELQRVKLASELFS-EPPGTLFILDEPSTGLHQ  122 (176)
T ss_pred             HHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCH
Confidence            33 33345666666 7  789999999887764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.66  E-value=0.00061  Score=52.72  Aligned_cols=40  Identities=30%  Similarity=0.379  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD  213 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~  213 (266)
                      ++.|+|++|+||||++..+......  .-..++|+.......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence            4689999999999999999887642  345677887766543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.65  E-value=0.00017  Score=61.30  Aligned_cols=26  Identities=35%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+.++|++|+||||+|+.+.+..
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999998864

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.64  E-value=0.00049  Score=63.30  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=40.5

Q ss_pred             CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..+..|...+..+++ ..+-++|+.|+||||+|+.+.+...
T Consensus        12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            466789998888888888776666 4578999999999999999988754

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.62  E-value=0.00042  Score=68.45  Aligned_cols=48  Identities=19%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++||+.+++.++..|.......+.++|++|+|||++++.+.....
T Consensus       172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~  219 (852)
T TIGR03346       172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV  219 (852)
T ss_pred             CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence            456899999999999998776667777999999999999999988753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.61  E-value=0.00068  Score=60.45  Aligned_cols=49  Identities=24%  Similarity=0.389  Sum_probs=40.9

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.+.+.+...++. .+.++|+.|+||||+|+.+.+...
T Consensus        14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            4667899999999998888765554 568999999999999999988764

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.61  E-value=6.1e-05  Score=55.91  Aligned_cols=24  Identities=42%  Similarity=0.538  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|.|.|+.|+||||+|+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999998753

...

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.60  E-value=0.00013  Score=66.50  Aligned_cols=98  Identities=19%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---------CCC-----------eEEEE--Ee---CCCCCHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---------VCD-----------EVVFV--EV---SRTPDVKRIQGDVA  222 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f~-----------~~~wv--~v---~~~~~~~~~~~~i~  222 (266)
                      +--..|++||++|+|||||.+.+|.+.....         +|.           ...|.  .+   -......+..+.|+
T Consensus       414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~il  493 (614)
T KOG0927|consen  414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSIL  493 (614)
T ss_pred             CcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHH
Confidence            3457899999999999999999999864321         111           00111  00   00124556778888


Q ss_pred             HHhcCC-------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          223 DQLSLN-------ICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       223 ~~~~~~-------~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      ..+|..       +...|..+....+...+.-...-|||||+..|..|.+
T Consensus       494 grfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~  543 (614)
T KOG0927|consen  494 GRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE  543 (614)
T ss_pred             HHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence            888773       2234555555555555443278899999999998864

>PRK08116 hypothetical protein; Validated

Probab=97.60  E-value=0.00024  Score=60.64  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCe
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKK  250 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr  250 (266)
                      .-+.++|..|+|||.||..+++....+  .-.+++++      ..+++..|...+.... ..+    ...+.+.+.+ -.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-~~~----~~~~~~~l~~-~d  180 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-KED----ENEIIRSLVN-AD  180 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-ccc----HHHHHHHhcC-CC
Confidence            458899999999999999999987532  23445554      3445555555443211 111    1223444554 33


Q ss_pred             EEEEEeCCC
Q 045699          251 ILFVLDNIW  259 (266)
Q Consensus       251 ~LlvlDDvw  259 (266)
                       ||||||+-
T Consensus       181 -lLviDDlg  188 (268)
T PRK08116        181 -LLILDDLG  188 (268)
T ss_pred             -EEEEeccc
Confidence             89999984

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.59  E-value=0.00041  Score=60.53  Aligned_cols=49  Identities=16%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|.+...+.+..++...+. ..+.++|+.|+||||+|+.+++..
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3456789999999999998876554 566668999999999999999875

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.59  E-value=0.00054  Score=63.66  Aligned_cols=51  Identities=18%  Similarity=0.341  Sum_probs=42.7

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus        12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3346778999999999999997766655 68999999999999999988764

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.55  E-value=0.00082  Score=62.70  Aligned_cols=50  Identities=24%  Similarity=0.448  Sum_probs=41.0

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|...+...++. .+.++|+.|+||||+|+.+.+...
T Consensus        13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34667899999999999888765554 477899999999999999988654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.55  E-value=0.0004  Score=67.33  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++||+.+++.+++.|......-+.++|+.|+|||++|+.+....
T Consensus       185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i  231 (758)
T PRK11034        185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_pred             CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999998876555666789999999999999998864

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.54  E-value=0.00083  Score=56.82  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG  248 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~  248 (266)
                      +..-+.++|..|+|||.||..+.+... +..+ .+.+++      ..+++.++......       ......|.+.+.  
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~l~~~l~--  166 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEKLLRELK--  166 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHHHHHHhh--
Confidence            678899999999999999999999987 3333 334443      44666666655533       112223444343  


Q ss_pred             CeEEEEEeCCCC
Q 045699          249 KKILFVLDNIWT  260 (266)
Q Consensus       249 kr~LlvlDDvw~  260 (266)
                      +-=||||||+-.
T Consensus       167 ~~dlLIiDDlG~  178 (254)
T COG1484         167 KVDLLIIDDIGY  178 (254)
T ss_pred             cCCEEEEecccC
Confidence            455888999765

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.53  E-value=0.00055  Score=51.86  Aligned_cols=88  Identities=24%  Similarity=0.338  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE------------------EeCCCCC-----------HHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV------------------EVSRTPD-----------VKRIQG  219 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv------------------~v~~~~~-----------~~~~~~  219 (266)
                      .-.+++|+|.+|+|||||.+.+......   ....+++                  .+++...           ...-..
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~   86 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE   86 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCCccccceeeecccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999999999776432   1122211                  2222211           122344


Q ss_pred             HHHHHhcC------CC----CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCC
Q 045699          220 DVADQLSL------NI----CEGSESER-AMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       220 ~i~~~~~~------~~----~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .+++.++.      ..    ...+..+. .-.|...|-. +.-+++|||..+
T Consensus        87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~-~~~llllDEPt~  137 (137)
T PF00005_consen   87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK-NPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT-TSSEEEEESTTT
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHHHHHHc-CCCEEEEeCCCC
Confidence            55555543      12    34454333 3445666776 888999999754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.52  E-value=0.00066  Score=56.23  Aligned_cols=88  Identities=22%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hcCC---CCCCCHHH---H
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ----LSLN---ICEGSESE---R  237 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~----~~~~---~~~~~~~~---~  237 (266)
                      ....++.|+|.+|+|||+|+..+.....  ..-..++|++.. .++...+. +++..    +..+   ....+..+   .
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA   96 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence            3467999999999999999999987654  234678899887 56655543 33322    1000   11222222   2


Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCC
Q 045699          238 AMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       238 ~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ...+...+.. +--+||+|.+..
T Consensus        97 i~~~~~~~~~-~~~lvVIDsi~a  118 (225)
T PRK09361         97 IRKAEKLAKE-NVGLIVLDSATS  118 (225)
T ss_pred             HHHHHHHHHh-cccEEEEeCcHH
Confidence            3344444545 777999999853

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.52  E-value=0.00057  Score=63.49  Aligned_cols=48  Identities=27%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             cccccchHHHHHHHHHH---hCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDA---LSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++++.++   +..         ...+-+.++|++|+|||+||+.+.+...
T Consensus        54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~  113 (495)
T TIGR01241        54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG  113 (495)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence            55677877666555443   321         1234588999999999999999988754

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.51  E-value=0.00029  Score=64.32  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=42.5

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....+++|.+..+..|..++...++. .+.++|+.|+||||+|+.+.+...
T Consensus        14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            334667899999999999888777665 479999999999999999988764

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.51  E-value=0.0018  Score=51.70  Aligned_cols=92  Identities=23%  Similarity=0.379  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE---EeCCCCCHHHHHH------HHHHHhcC------CCCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV---EVSRTPDVKRIQG------DVADQLSL------NICEG  232 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv---~v~~~~~~~~~~~------~i~~~~~~------~~~~~  232 (266)
                      ..-.+++|+|.+|+|||||++.+.....   .....+++   .+. ..+...+..      ++++.++.      .....
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L   98 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL   98 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence            3567999999999999999999988643   23344443   222 112222221      24555544      12234


Q ss_pred             CHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          233 SESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       233 ~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +..+ ..-.+...|-. ..-+++||+..+.+|.
T Consensus        99 S~G~~qrl~laral~~-~p~llllDEP~~~LD~  130 (180)
T cd03214          99 SGGERQRVLLARALAQ-EPPILLLDEPTSHLDI  130 (180)
T ss_pred             CHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCH
Confidence            4333 33445666666 7889999999988764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.50  E-value=0.00068  Score=59.07  Aligned_cols=87  Identities=22%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l  241 (266)
                      +.-+++-|+|+.|+||||||..+.....  ..-..++|+...+.+++.     .+++++.+.      ...+.++....+
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~  125 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA  125 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence            3567999999999999999988776654  234567788877766653     355555522      122445555556


Q ss_pred             HHHHhcCCeEEEEEeCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...++.+.--+||+|-|-..
T Consensus       126 ~~li~~~~~~lIVIDSv~al  145 (321)
T TIGR02012       126 ETLVRSGAVDIIVVDSVAAL  145 (321)
T ss_pred             HHHhhccCCcEEEEcchhhh
Confidence            55565546678999987643

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.49  E-value=0.0003  Score=56.22  Aligned_cols=75  Identities=27%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG  248 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~  248 (266)
                      +..-+.++|+.|+|||.||..+.+....+ . -.+.|+++      .+++..|-    ......+..    .+.+.+.  
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g-~~v~f~~~------~~L~~~l~----~~~~~~~~~----~~~~~l~--  107 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRK-G-YSVLFITA------SDLLDELK----QSRSDGSYE----ELLKRLK--  107 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEH------HHHHHHHH----CCHCCTTHC----HHHHHHH--
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccC-C-cceeEeec------Cceecccc----ccccccchh----hhcCccc--
Confidence            34679999999999999999999876532 2 23455543      34444443    222222222    2334444  


Q ss_pred             CeEEEEEeCCCCC
Q 045699          249 KKILFVLDNIWTS  261 (266)
Q Consensus       249 kr~LlvlDDvw~~  261 (266)
                      +-=||||||+-..
T Consensus       108 ~~dlLilDDlG~~  120 (178)
T PF01695_consen  108 RVDLLILDDLGYE  120 (178)
T ss_dssp             TSSCEEEETCTSS
T ss_pred             cccEeccccccee
Confidence            3457889998643

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK06696 uridine kinase; Validated

Probab=97.49  E-value=0.00023  Score=59.00  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHHhC---CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          153 SRKSILNDALDALS---NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       153 gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|...++.|.+.+.   .....+|+|.|.+|+||||||+.+.....
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35566667766653   45678999999999999999999998764

>PRK12377 putative replication protein; Provisional

Probab=97.49  E-value=0.00045  Score=58.14  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG  248 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~  248 (266)
                      ....+.++|..|+|||+||..+.+....  ..-.+++++++      +++..|-.....   ..+..    .+.+.+.  
T Consensus       100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~---~~~~~----~~l~~l~--  162 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDN---GQSGE----KFLQELC--  162 (248)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhc---cchHH----HHHHHhc--
Confidence            3468899999999999999999998763  23334555543      455544443321   11111    2333443  


Q ss_pred             CeEEEEEeCCCC
Q 045699          249 KKILFVLDNIWT  260 (266)
Q Consensus       249 kr~LlvlDDvw~  260 (266)
                      +--||||||+-.
T Consensus       163 ~~dLLiIDDlg~  174 (248)
T PRK12377        163 KVDLLVLDEIGI  174 (248)
T ss_pred             CCCEEEEcCCCC
Confidence            567899999843

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.49  E-value=0.00082  Score=64.33  Aligned_cols=50  Identities=20%  Similarity=0.404  Sum_probs=41.3

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+...
T Consensus        13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34677899999999999998776654 457999999999999998887754

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.48  E-value=0.00075  Score=56.13  Aligned_cols=49  Identities=16%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             cccccchHHHHHHHHHH----hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          148 YEAFESRKSILNDALDA----LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...++|.+..++.|++-    +.......+.++|..|+|||+|++.+.+....
T Consensus        26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~   78 (249)
T PF05673_consen   26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD   78 (249)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence            56688988888777653    44556788899999999999999999987653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.48  E-value=0.00097  Score=52.61  Aligned_cols=95  Identities=21%  Similarity=0.162  Sum_probs=55.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEeCCCCCHHHHHHHHHHHhcC-CCCCCCHHH-HHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEVSRTPDVKRIQGDVADQLSL-NICEGSESE-RAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v~~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~l  241 (266)
                      ..-.+++|+|++|+|||||++.+........   .++. ..-..+++.+....  ..+.+.+.. .....|..+ ..-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~l  102 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAF  102 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHH
Confidence            3567999999999999999999988754221   1111 11123344432211  122222221 233445333 33445


Q ss_pred             HHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      ...|-. +.=+++||+..+..|.+
T Consensus       103 aral~~-~p~~lllDEPt~~LD~~  125 (166)
T cd03223         103 ARLLLH-KPKFVFLDEATSALDEE  125 (166)
T ss_pred             HHHHHc-CCCEEEEECCccccCHH
Confidence            666666 78899999999887753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.47  E-value=0.0002  Score=60.43  Aligned_cols=50  Identities=24%  Similarity=0.347  Sum_probs=41.5

Q ss_pred             cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699          148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL  197 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  197 (266)
                      ..+|+|.++.+++|.=.+.     +..+..+.++|++|.||||||..+.+...++
T Consensus        25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            5678999888887755543     4568999999999999999999999987653

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.47  E-value=0.0011  Score=59.85  Aligned_cols=50  Identities=20%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.+....
T Consensus        14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            46678899999999988887766654 889999999999999999887643

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.45  E-value=0.00087  Score=57.61  Aligned_cols=87  Identities=21%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLNICE-GSESERAMMLCGQLK  246 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~~L~  246 (266)
                      ...++.++|++|+||||++..+......+..-..+..++.... ....+.+..-...++.+... .+..++...+. .+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~  271 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR  271 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence            4579999999999999999988776643211123445554321 12223333334444444332 23334433333 333


Q ss_pred             cCCeEEEEEeCC
Q 045699          247 KGKKILFVLDNI  258 (266)
Q Consensus       247 ~~kr~LlvlDDv  258 (266)
                      + . =+|++|..
T Consensus       272 ~-~-d~vliDt~  281 (282)
T TIGR03499       272 D-K-DLILIDTA  281 (282)
T ss_pred             C-C-CEEEEeCC
Confidence            3 3 47777753

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.45  E-value=0.00058  Score=62.42  Aligned_cols=76  Identities=17%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD-EVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG  248 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~  248 (266)
                      ...+.|+|+.|+|||+|++.+.+.... .+.+ .+.|++.      .+++.++...+...    +.    ..+.+.+.. 
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~----~~f~~~~~~-  193 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG----KL----NEFREKYRK-  193 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc----cH----HHHHHHHHh-
Confidence            456999999999999999999998652 2233 3455543      35555665555321    11    122333333 


Q ss_pred             CeEEEEEeCCCCC
Q 045699          249 KKILFVLDNIWTS  261 (266)
Q Consensus       249 kr~LlvlDDvw~~  261 (266)
                      +.-+|+|||+...
T Consensus       194 ~~dvLlIDDi~~l  206 (440)
T PRK14088        194 KVDVLLIDDVQFL  206 (440)
T ss_pred             cCCEEEEechhhh
Confidence            4457777777643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.45  E-value=0.00063  Score=52.37  Aligned_cols=28  Identities=39%  Similarity=0.608  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|.+|+|||||++.+....+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3468999999999999999999988653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.45  E-value=0.001  Score=56.05  Aligned_cols=93  Identities=27%  Similarity=0.392  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe--EEEEEeCCC------CCHHHHH--------------HHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE--VVFVEVSRT------PDVKRIQ--------------GDVAD  223 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~--~~wv~v~~~------~~~~~~~--------------~~i~~  223 (266)
                      .-.+++|+|.+|+|||||++.+........   .++.  +.++  ++.      .+..+.+              .+++.
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~  101 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK--PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK  101 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEe--cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence            457999999999999999999988643221   1221  2222  222      1222222              23344


Q ss_pred             HhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          224 QLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       224 ~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .++..      ....|..+.+ -.|...|.. +.=+++||+..+.+|.
T Consensus       102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~-~p~llllDEPt~~LD~  148 (246)
T cd03237         102 PLQIEQILDREVPELSGGELQRVAIAACLSK-DADIYLLDEPSAYLDV  148 (246)
T ss_pred             HcCCHHHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCH
Confidence            44331      2234543333 346667776 7889999999988875

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.00096  Score=62.96  Aligned_cols=50  Identities=20%  Similarity=0.404  Sum_probs=42.0

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++..+++.. +.++|..|+||||+|+.+.+...
T Consensus        13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            346678999999999999998777654 58899999999999999988764

>PRK09354 recA recombinase A; Provisional

Probab=97.45  E-value=0.00093  Score=58.76  Aligned_cols=87  Identities=22%  Similarity=0.295  Sum_probs=60.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l  241 (266)
                      +.-+++-|+|+.|+|||||+.++.....  ..-..++|+.....+++.     .+++++.+.      ...+.++....+
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~  130 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA  130 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence            3467999999999999999999876654  234678899888877753     455565532      122455555566


Q ss_pred             HHHHhcCCeEEEEEeCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...++.++--+||+|-|-..
T Consensus       131 ~~li~s~~~~lIVIDSvaaL  150 (349)
T PRK09354        131 DTLVRSGAVDLIVVDSVAAL  150 (349)
T ss_pred             HHHhhcCCCCEEEEeChhhh
Confidence            66666556778999988654

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.45  E-value=0.00085  Score=58.50  Aligned_cols=87  Identities=23%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l  241 (266)
                      +.-+++-|+|++|+||||||..+.-...  ..-..++|+.....+++.     .+.+++.+.      ...+.++....+
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~  125 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQ--KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA  125 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence            3467899999999999999999876654  234578899888777653     345555421      122455555566


Q ss_pred             HHHHhcCCeEEEEEeCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...++.+.--+||+|-|-..
T Consensus       126 ~~li~s~~~~lIVIDSvaal  145 (325)
T cd00983         126 DSLVRSGAVDLIVVDSVAAL  145 (325)
T ss_pred             HHHHhccCCCEEEEcchHhh
Confidence            55565546678999987644

RecA couples ATP hydrolysis to DNA strand exchange.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.43  E-value=0.00069  Score=63.04  Aligned_cols=28  Identities=39%  Similarity=0.583  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....||+||.+|+|||||.+.+.....
T Consensus        27 ~~G~riGLvG~NGaGKSTLLkilaG~~~   54 (530)
T COG0488          27 NPGERIGLVGRNGAGKSTLLKILAGELE   54 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence            3567899999999999999999988753

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.43  E-value=0.00071  Score=60.92  Aligned_cols=48  Identities=25%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+-+.++|+.|+|||+||+.+.+...
T Consensus       144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~  204 (398)
T PTZ00454        144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT  204 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            5567888877777765542    1         2356788999999999999999998754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.43  E-value=0.0018  Score=52.63  Aligned_cols=57  Identities=23%  Similarity=0.245  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLN  228 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~  228 (266)
                      .++|.+||+.|+||||.+-.+......+  -..+..++.... ....+-++..++.++.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp   58 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP   58 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence            3689999999999988666666555432  234556665422 23445556666666654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.42  E-value=0.0024  Score=52.81  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=58.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCC----------CCCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLN----------ICEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~----------~~~~~~  234 (266)
                      ...++.|+|.+|+|||+|+..+........    .-..++|+.....++...+. .+.+..+..          ....+.
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~   96 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG   96 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence            468999999999999999999876643111    11567899888877766543 444443221          012244


Q ss_pred             HHHHHHHHHHHh---cCCeEEEEEeCCCCC
Q 045699          235 SERAMMLCGQLK---KGKKILFVLDNIWTS  261 (266)
Q Consensus       235 ~~~~~~l~~~L~---~~kr~LlvlDDvw~~  261 (266)
                      +++...+...+.   .++--|||+|.+...
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l  126 (226)
T cd01393          97 EQQLEIVEELERIMSSGRVDLVVVDSVAAL  126 (226)
T ss_pred             HHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence            555555555443   435569999998654

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.42  E-value=0.0014  Score=54.89  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      .+..+.++........+.|+|+.|+|||+|++.+++....  .-..+.|+++..
T Consensus        32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~   83 (235)
T PRK08084         32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDK   83 (235)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHH
Confidence            4455555544455578999999999999999999987652  223455666643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.42  E-value=0.00043  Score=54.47  Aligned_cols=28  Identities=39%  Similarity=0.472  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+.....
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567999999999999999999987643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.40  E-value=0.002  Score=54.03  Aligned_cols=89  Identities=27%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             HHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCH
Q 045699          157 ILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSE  234 (266)
Q Consensus       157 ~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~  234 (266)
                      .+..+.++..+  .....+.++|.+|+|||+||..+.+....+  -..+++++      ..+++..+-.....  ...+.
T Consensus        84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~~~~  153 (244)
T PRK07952         84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SETSE  153 (244)
T ss_pred             HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--ccccH
Confidence            34444444432  224578899999999999999999987532  23444543      34555555444321  11122


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699          235 SERAMMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       235 ~~~~~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      .    .+.+.+.  +.=||||||+-..
T Consensus       154 ~----~~l~~l~--~~dlLvIDDig~~  174 (244)
T PRK07952        154 E----QLLNDLS--NVDLLVIDEIGVQ  174 (244)
T ss_pred             H----HHHHHhc--cCCEEEEeCCCCC
Confidence            2    2334454  3447888998654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00098  Score=58.04  Aligned_cols=93  Identities=22%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV  214 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  214 (266)
                      +.++-|.+..+++|.+...    +         +..+=|.++|++|.|||-||++|.|+..  ..     |+.|..+   
T Consensus       150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~--At-----FIrvvgS---  219 (406)
T COG1222         150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD--AT-----FIRVVGS---  219 (406)
T ss_pred             hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC--ce-----EEEeccH---
Confidence            6677888888888876652    1         2456788999999999999999999754  22     4444332   


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                           ++.+..     ......+...+...-+....++|++|+|..
T Consensus       220 -----ElVqKY-----iGEGaRlVRelF~lArekaPsIIFiDEIDA  255 (406)
T COG1222         220 -----ELVQKY-----IGEGARLVRELFELAREKAPSIIFIDEIDA  255 (406)
T ss_pred             -----HHHHHH-----hccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence                 111111     112233445555554444677788887753

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.39  E-value=0.00044  Score=55.00  Aligned_cols=36  Identities=36%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV  206 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv  206 (266)
                      +..+|.+.|+.|+||||+|+.+++...  ..+...+++
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~   41 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL   41 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence            457999999999999999999999875  334444444

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.39  E-value=0.002  Score=52.71  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.39  E-value=0.00078  Score=58.53  Aligned_cols=90  Identities=23%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             chHHHHHHHHHHhCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699          153 SRKSILNDALDALSN----PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       153 gr~~~~~~l~~~l~~----~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~  228 (266)
                      ++........+++..    ...+-+-++|..|+|||.||..+.+....+ . -.+.+++++      .++.++...+.. 
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~~------~l~~~lk~~~~~-  205 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHFP------EFIRELKNSISD-  205 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEHH------HHHHHHHHHHhc-
Confidence            444444444555531    245678999999999999999999997622 2 234555553      555666555422 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          229 ICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       229 ~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                         .+..    ...+.+.  +-=||||||+-.
T Consensus       206 ---~~~~----~~l~~l~--~~dlLiIDDiG~  228 (306)
T PRK08939        206 ---GSVK----EKIDAVK--EAPVLMLDDIGA  228 (306)
T ss_pred             ---CcHH----HHHHHhc--CCCEEEEecCCC
Confidence               1211    2223343  566899999854

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.38  E-value=0.00029  Score=61.99  Aligned_cols=46  Identities=15%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             cccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++.|.++.++++++++.      +...+++.++|+.|+||||||+.+.+...
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            68899999999998884      23468999999999999999999998875

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.38  E-value=0.0017  Score=60.73  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=40.9

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus        14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45678999999999999887766654 57999999999999999987753

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.0011  Score=58.94  Aligned_cols=60  Identities=17%  Similarity=0.130  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~  228 (266)
                      +..++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~  196 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP  196 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc
Confidence            457999999999999999999987653221123444554322 123334445555555553

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.38  E-value=0.0019  Score=59.91  Aligned_cols=51  Identities=20%  Similarity=0.340  Sum_probs=41.3

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ....+++|.+..+..|...+..+++ .-+-++|+.|+||||+|+.+.+....
T Consensus        18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3466789999988888887665543 67889999999999999999988643

>PRK08181 transposase; Validated

Probab=97.38  E-value=0.00049  Score=58.61  Aligned_cols=78  Identities=21%  Similarity=0.111  Sum_probs=45.7

Q ss_pred             HHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 045699          163 DALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLC  242 (266)
Q Consensus       163 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~  242 (266)
                      +|+.  ...-+.++|+.|+|||.||..+.+....+  .-.+.|++      ..+++..+....    ...+..    .+.
T Consensus       101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~----~~~~~~----~~l  162 (269)
T PRK08181        101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVAR----RELQLE----SAI  162 (269)
T ss_pred             HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHH----hCCcHH----HHH
Confidence            4554  34569999999999999999999876422  22344444      344555543322    111211    222


Q ss_pred             HHHhcCCeEEEEEeCCCC
Q 045699          243 GQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~  260 (266)
                      +.+.  +-=||||||+-.
T Consensus       163 ~~l~--~~dLLIIDDlg~  178 (269)
T PRK08181        163 AKLD--KFDLLILDDLAY  178 (269)
T ss_pred             HHHh--cCCEEEEecccc
Confidence            3333  345888888843

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.35  E-value=0.0013  Score=62.17  Aligned_cols=50  Identities=18%  Similarity=0.424  Sum_probs=40.9

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++...++ ..+.++|+.|+||||+|+.+.+...
T Consensus        13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3466788999989999998877666 4558999999999999999966643

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.35  E-value=0.0018  Score=61.23  Aligned_cols=50  Identities=20%  Similarity=0.361  Sum_probs=41.7

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+...
T Consensus        12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3466789999999999999876664 5668999999999999999988754

>CHL00176 ftsH cell division protein; Validated

Probab=97.35  E-value=0.0011  Score=63.06  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=33.5

Q ss_pred             cccccchHHHHHHH---HHHhCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDA---LDALSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.+   +..+...         ..+-+.++|++|+|||+||+.+.+...
T Consensus       182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~  241 (638)
T CHL00176        182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE  241 (638)
T ss_pred             HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45566766655544   4444321         245689999999999999999988653

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.35  E-value=0.00029  Score=66.76  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             cCCcccccchHHHHHHHHHHhCC-----CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSN-----PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....++.+.+..++.+..|+..     ....++.|+|+.|+||||+++.+.....
T Consensus        80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            44466788888888888888753     2345799999999999999999988753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.34  E-value=0.0025  Score=52.61  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45799999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.33  E-value=0.0012  Score=52.57  Aligned_cols=87  Identities=22%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE-----------------EeCCCCCHHHHHHHHHHHhcCCCCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV-----------------EVSRTPDVKRIQGDVADQLSLNICE  231 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-----------------~v~~~~~~~~~~~~i~~~~~~~~~~  231 (266)
                      .-.+++|+|++|+|||||++.+.......   ...+++                 .+++.+....  ..+.+.+   ...
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i---~~~   98 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL---GRR   98 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh---ccc
Confidence            56789999999999999999998864321   122222                 1122211110  0111111   223


Q ss_pred             CCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          232 GSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       232 ~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .+..+ ..-.|...+-. +.=+++||++.+..|.
T Consensus        99 LS~G~~qrv~laral~~-~p~~lllDEP~~~LD~  131 (178)
T cd03247          99 FSGGERQRLALARILLQ-DAPIVLLDEPTVGLDP  131 (178)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence            34333 33345666666 7889999999988764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>CHL00181 cbbX CbbX; Provisional

Probab=97.33  E-value=0.0019  Score=55.63  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+.++|++|+||||+|+.++....
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~   84 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILY   84 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34588999999999999999988654

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.33  E-value=0.003  Score=51.79  Aligned_cols=27  Identities=26%  Similarity=0.409  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            356799999999999999999997764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.32  E-value=0.0017  Score=61.02  Aligned_cols=51  Identities=24%  Similarity=0.366  Sum_probs=41.8

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....+++|++..++.+.+++...++ .-+.++|+.|+||||+|+.+.....
T Consensus        12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            33466789999999999998866554 4588999999999999999988754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.00078  Score=55.94  Aligned_cols=95  Identities=18%  Similarity=0.303  Sum_probs=56.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc------------cC-------CC---eEEEEEeCCCC------------C
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL------------KV-------CD---EVVFVEVSRTP------------D  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------------~~-------f~---~~~wv~v~~~~------------~  213 (266)
                      ..-..++|+|++|||||||.+.+..-.+..            +.       |+   ---|-+|-++.            .
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e  106 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE  106 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence            456899999999999999999996543211            11       21   11243333321            1


Q ss_pred             HHHHHHHHHHHhcCC-----C-CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          214 VKRIQGDVADQLSLN-----I-CEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       214 ~~~~~~~i~~~~~~~-----~-~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      ..+...+++..++..     + ...|.... ...|.+.|.. ..=+|+||+.....|
T Consensus       107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~-~P~lLLlDEPFgALD  162 (248)
T COG1116         107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT-RPKLLLLDEPFGALD  162 (248)
T ss_pred             HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc-CCCEEEEcCCcchhh
Confidence            234566677777662     1 23443222 2345666666 777889999877654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.31  E-value=0.00069  Score=61.60  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=36.5

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ....-+.++|++|+|||+||+.+.+...
T Consensus       182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~  242 (438)
T PTZ00361        182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS  242 (438)
T ss_pred             HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4567788888777766542    1         2345688999999999999999999754

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.30  E-value=0.002  Score=50.95  Aligned_cols=24  Identities=46%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++.++|++|+||||++..+.....
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~   25 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999988764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.30  E-value=0.0015  Score=59.04  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH----
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES----  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~----  235 (266)
                      .-..++|+|..|+|||||++.+.+..    ..+..+.+-+++... ..++..+++..-+.       ...+.+ ..    
T Consensus       161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a  236 (444)
T PRK08972        161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG  236 (444)
T ss_pred             CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence            56789999999999999999998643    235677777776554 34566655544222       111222 11    


Q ss_pred             -HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 -ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 -~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       ..+..+.+++++ |++.||++||+..
T Consensus       237 ~~~A~tiAEyfrd~G~~VLl~~DslTR  263 (444)
T PRK08972        237 CETATTIAEYFRDQGLNVLLLMDSLTR  263 (444)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence             223346677754 6999999999864

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.30  E-value=0.0023  Score=58.05  Aligned_cols=90  Identities=17%  Similarity=0.247  Sum_probs=58.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      .+-..++|+|..|+|||||++.+.+...    .+..+++-+..... ..++..+.+..-+.       ...+.+ ..   
T Consensus       156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~  231 (442)
T PRK08927        156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ  231 (442)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence            3568899999999999999999998653    24566677766543 33555445443222       111222 11   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                        ..+..+.+++++ |+..||++||+...
T Consensus       232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~  260 (442)
T PRK08927        232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF  260 (442)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence              223446777744 69999999998653

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.29  E-value=0.0019  Score=56.37  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             ccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc----cccCCCeEEEEE-eCCCCCHHHHHHHHH
Q 045699          149 EAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK----KLKVCDEVVFVE-VSRTPDVKRIQGDVA  222 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~-v~~~~~~~~~~~~i~  222 (266)
                      .+++|.+..++.+.+++..+++ ....++|+.|+||||+|+.++...-    ...|+|...|.. -+......+ .+++.
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~   82 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII   82 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence            4577888888999998876555 4668999999999999999998642    234677766765 344445555 44555


Q ss_pred             HHh
Q 045699          223 DQL  225 (266)
Q Consensus       223 ~~~  225 (266)
                      +.+
T Consensus        83 ~~~   85 (313)
T PRK05564         83 EEV   85 (313)
T ss_pred             HHH
Confidence            544

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.0027  Score=56.67  Aligned_cols=49  Identities=29%  Similarity=0.555  Sum_probs=41.1

Q ss_pred             CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.+.+.+...+. ..+-++|+.|+||||+|+.+.+...
T Consensus        15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970         15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            466788999999999999876555 4788999999999999999977653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.28  E-value=0.0015  Score=51.87  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+....+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            3467999999999999999999988643

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.28  E-value=0.0019  Score=51.29  Aligned_cols=27  Identities=41%  Similarity=0.572  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            346799999999999999999998864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.28  E-value=0.0031  Score=53.37  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999998764

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.28  E-value=0.0026  Score=52.97  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=34.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~  227 (266)
                      ...++.|.|.+|+|||||+..+...... .. ..++|++.  ..++.++++.+ .+++.
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~~--e~~~~~~~~~~-~~~g~   76 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVST--QLTTTEFIKQM-MSLGY   76 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence            4569999999999999997555443321 12 34566663  33556666665 34443

>PRK06526 transposase; Provisional

Probab=97.27  E-value=0.00036  Score=59.02  Aligned_cols=27  Identities=30%  Similarity=0.219  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+.++|++|+|||+||..+.+...
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~  123 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRAC  123 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence            356789999999999999999988764

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=97.26  E-value=0.0031  Score=53.41  Aligned_cols=91  Identities=23%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      ...+.=|+|.+|+|||.|+-.+.-......    .-..++|+.....|+..++. +|+++.+.+.          ...+.
T Consensus        37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~  115 (256)
T PF08423_consen   37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL  115 (256)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred             CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence            457999999999999999988865543221    22468999999999988865 6777655421          11233


Q ss_pred             HHH---HHHHHHHHhcCCeEEEEEeCCCC
Q 045699          235 SER---AMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       235 ~~~---~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .++   ...+...+.+.+==|||+|-+..
T Consensus       116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa  144 (256)
T PF08423_consen  116 EELLELLEQLPKLLSESKIKLIVIDSIAA  144 (256)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred             HHHHHHHHHHHhhccccceEEEEecchHH
Confidence            333   33344445443667999998754

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.26  E-value=0.0019  Score=57.04  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=25.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      .....++|||+.|+|||.+|+.+++....
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~  174 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGI  174 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence            45689999999999999999999998763

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.00081  Score=61.07  Aligned_cols=93  Identities=23%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-----EEEEEeCCC---------------------CCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-----VVFVEVSRT---------------------PDVKRIQGDVA  222 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-----~~wv~v~~~---------------------~~~~~~~~~i~  222 (266)
                      ..+.-|+||.+|+|||||.+++.+.. + ..|..     ..++...+.                     .+..+|...|+
T Consensus       105 ~GrRYGLvGrNG~GKsTLLRaia~~~-v-~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L  182 (582)
T KOG0062|consen  105 RGRRYGLVGRNGIGKSTLLRAIANGQ-V-SGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL  182 (582)
T ss_pred             cccccceeCCCCCcHHHHHHHHHhcC-c-CccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence            45788999999999999999999831 1 12211     112211110                     02234444455


Q ss_pred             HHhcCC-------CCCCC-HHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          223 DQLSLN-------ICEGS-ESERAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       223 ~~~~~~-------~~~~~-~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..+|-.       ..+.| ...+.-.|.+.+-. +.=||+||+..|.+|.
T Consensus       183 ~glGFt~emq~~pt~slSGGWrMrlaLARAlf~-~pDlLLLDEPTNhLDv  231 (582)
T KOG0062|consen  183 AGLGFTPEMQLQPTKSLSGGWRMRLALARALFA-KPDLLLLDEPTNHLDV  231 (582)
T ss_pred             HhCCCCHHHHhccccccCcchhhHHHHHHHHhc-CCCEEeecCCcccchh
Confidence            566552       22333 34555667777776 8999999999999874

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.26  E-value=0.0012  Score=59.76  Aligned_cols=75  Identities=20%  Similarity=0.272  Sum_probs=43.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK  249 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k  249 (266)
                      ...+.|+|+.|+|||+|++.+++....+..--.++|++      ..++...+...+...    ..    ..+.+.+++  
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~----~~----~~~~~~~~~--  199 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN----KM----EEFKEKYRS--  199 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC----CH----HHHHHHHHh--
Confidence            45789999999999999999999875321112345554      334444555444321    11    123333432  


Q ss_pred             eEEEEEeCCCC
Q 045699          250 KILFVLDNIWT  260 (266)
Q Consensus       250 r~LlvlDDvw~  260 (266)
                      .-+|+|||+..
T Consensus       200 ~dlLiiDDi~~  210 (405)
T TIGR00362       200 VDLLLIDDIQF  210 (405)
T ss_pred             CCEEEEehhhh
Confidence            23677787754

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.26  E-value=0.0041  Score=52.69  Aligned_cols=27  Identities=26%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999998764

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00072  Score=63.66  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=39.6

Q ss_pred             ccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+-.|.++.+++|++.|.      .-+..++++||++|+|||+|++.|.....
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~  375 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG  375 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence            345688899999999884      23458999999999999999999999876

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.25  E-value=0.0023  Score=55.83  Aligned_cols=93  Identities=17%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~  233 (266)
                      ....++-|+|+.|+|||+|+..+.-.....    ..-..++|+....+|++.++. +++++++.+.+          ..+
T Consensus        94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~  172 (313)
T TIGR02238        94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT  172 (313)
T ss_pred             cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence            356899999999999999998875432211    112478999999999998865 56777765321          112


Q ss_pred             HHHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699          234 ESERA---MMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       234 ~~~~~---~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      .+++.   ..+...+..++-=|||+|-+...
T Consensus       173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal  203 (313)
T TIGR02238       173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMAL  203 (313)
T ss_pred             HHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence            33333   33444444435558999988654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.25  E-value=0.0013  Score=54.58  Aligned_cols=40  Identities=15%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          156 SILNDALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       156 ~~~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+..+.++.. ......+.|+|..|+|||+||+.+++...
T Consensus        27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~   67 (227)
T PRK08903         27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS   67 (227)
T ss_pred             HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            33444444443 23457889999999999999999999753

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.24  E-value=0.0029  Score=52.03  Aligned_cols=26  Identities=35%  Similarity=0.495  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|.+|+|||||++.+..-.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            46789999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.24  E-value=0.0038  Score=52.21  Aligned_cols=87  Identities=17%  Similarity=0.254  Sum_probs=55.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ-AKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI-----------------  229 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~-~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-----------------  229 (266)
                      +...++.|.|.+|+|||+||..+... .+   .-+.++|++...  ++.++.+.+. +++.+.                 
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~   92 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTG   92 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccc
Confidence            35689999999999999999886443 32   346788888765  4455555432 332210                 


Q ss_pred             --------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          230 --------------CEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       230 --------------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                                    +..+..++...+.+.++..+.=+||+|.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~  137 (237)
T TIGR03877        93 GIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT  137 (237)
T ss_pred             ccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence                          1124456666666666543444688998754

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=97.24  E-value=0.0023  Score=55.95  Aligned_cols=93  Identities=13%  Similarity=0.148  Sum_probs=58.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~  233 (266)
                      ....++-|+|.+|+|||||+..+......   .. .-..++|+.....+++.++ ..+++.++....          ..+
T Consensus        94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~  172 (316)
T TIGR02239        94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN  172 (316)
T ss_pred             CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence            35789999999999999999988754221   11 1236799998888888774 456666554211          112


Q ss_pred             HHHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699          234 ESERA---MMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       234 ~~~~~---~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      .+++.   ..+...+...+--|||+|-+-..
T Consensus       173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al  203 (316)
T TIGR02239       173 TDHQLQLLQQAAAMMSESRFALLIVDSATAL  203 (316)
T ss_pred             hHHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence            23332   33333344435668999987653

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=97.24  E-value=0.0018  Score=58.72  Aligned_cols=89  Identities=18%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc-----C--CCCCCCH-----HH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLS-----L--NICEGSE-----SE  236 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~-----~--~~~~~~~-----~~  236 (266)
                      .-..++|+|..|+|||||++.+....+   ....+++..-...-+..++....+....     .  ..+....     ..
T Consensus       164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~  240 (450)
T PRK06002        164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL  240 (450)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence            457899999999999999998876432   2223333332233445544444443321     1  1112111     12


Q ss_pred             HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          237 RAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       237 ~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      ....+.+++++ |+..||++||+..
T Consensus       241 ~a~~iAEyfrd~G~~Vll~~DslTr  265 (450)
T PRK06002        241 TATAIAEYFRDRGENVLLIVDSVTR  265 (450)
T ss_pred             HHHHHHHHHHHcCCCEEEeccchHH
Confidence            23445666654 6999999999864

>PRK06921 hypothetical protein; Provisional

Probab=97.24  E-value=0.0025  Score=54.28  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      ....+.++|..|+|||+||..+.+....+. -..++|++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~  154 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF  154 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence            467899999999999999999999865321 234556553

>PRK14974 cell division protein FtsY; Provisional

Probab=97.23  E-value=0.0065  Score=53.44  Aligned_cols=56  Identities=29%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD--VKRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~  227 (266)
                      +..+|.++|++|+||||++..+....... .+ .++.++ ...+.  ..+-++..+..++.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv  196 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAA-GDTFRAGAIEQLEEHAERLGV  196 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEec-CCcCcHHHHHHHHHHHHHcCC
Confidence            46899999999999999888887765422 23 233333 22222  22334455556654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.23  E-value=0.0027  Score=54.64  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+.++|++|+||||+|+.+.....
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~   83 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILH   83 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3688999999999999988877654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PTZ00185 ATPase alpha subunit; Provisional

Probab=97.23  E-value=0.0034  Score=57.64  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHH-HHHHHHhccc-----cCCCeEEEEEeCCCCCHHHHHHHHHHHhcC-C--------CCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKL-----KVCDEVVFVEVSRTPDVKRIQGDVADQLSL-N--------ICEG  232 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~-----~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~-~--------~~~~  232 (266)
                      .+-..++|+|..|+|||+|| -.+.|+..+.     ++-+.++++.+++..+...-+.+.+..-+. +        .++.
T Consensus       187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep  266 (574)
T PTZ00185        187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP  266 (574)
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence            35678999999999999996 6777765321     244678999999876544334444444441 1        1111


Q ss_pred             CHHH-----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          233 SESE-----RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       233 ~~~~-----~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      ....     ....+.+++.+ |+..|||+||+.+.
T Consensus       267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~  301 (574)
T PTZ00185        267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ  301 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence            1111     23345666643 69999999998753

>TIGR00235 udk uridine kinase

Probab=97.23  E-value=0.00032  Score=57.43  Aligned_cols=28  Identities=39%  Similarity=0.591  Sum_probs=24.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +...+|+|+|++|+|||||++.+.....
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567999999999999999999998754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.23  E-value=0.0025  Score=52.68  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|+|.|.+|+||||||+.+.....
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999998764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.23  E-value=0.0036  Score=54.73  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~  233 (266)
                      +...++-|+|++|+|||+|+..+.-.......    =..++|+.....+++.++. +++++++.+.+          ..+
T Consensus       100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~  178 (317)
T PRK04301        100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN  178 (317)
T ss_pred             cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence            35789999999999999999999765432111    1478999999988888765 45555554211          111


Q ss_pred             H---HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          234 E---SERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       234 ~---~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      .   ..+...+...+.. .+--|||+|-+...
T Consensus       179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~  210 (317)
T PRK04301        179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAH  210 (317)
T ss_pred             HHHHHHHHHHHHHHHhccCceeEEEEECchHH
Confidence            1   1223444555543 24459999987653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.22  E-value=0.0033  Score=59.90  Aligned_cols=50  Identities=22%  Similarity=0.431  Sum_probs=41.8

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++...++. -+.++|+.|+||||+|+.+.....
T Consensus        13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            34667899999999999998776654 579999999999999999987643

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.22  E-value=0.0019  Score=59.60  Aligned_cols=27  Identities=33%  Similarity=0.380  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|+|+|++|+||||++..+.....
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la  375 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFA  375 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999988877543

>PRK13409 putative ATPase RIL; Provisional

Probab=97.22  E-value=0.0027  Score=60.24  Aligned_cols=95  Identities=27%  Similarity=0.366  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEEEEEeCCCC------CHHH-------------HHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVVFVEVSRTP------DVKR-------------IQGDVADQLS  226 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~------~~~~-------------~~~~i~~~~~  226 (266)
                      .-.+++|+|++|+|||||++.+....+...   .++..+ ..++|..      +..+             ...++++.++
T Consensus       364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i-~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~  442 (590)
T PRK13409        364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKI-SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ  442 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeE-EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence            457999999999999999999987643211   111110 1223321      1221             2233444544


Q ss_pred             C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          227 L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       227 ~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      .      .....|..+.+ -.|...|.. +.-+++||+..+.+|.+
T Consensus       443 l~~~~~~~~~~LSGGe~QRvaiAraL~~-~p~llLLDEPt~~LD~~  487 (590)
T PRK13409        443 LERLLDKNVKDLSGGELQRVAIAACLSR-DADLYLLDEPSAHLDVE  487 (590)
T ss_pred             CHHHHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHH
Confidence            4      22345654444 346667777 88899999999988753

>PRK08149 ATP synthase SpaL; Validated

Probab=97.22  E-value=0.0024  Score=57.76  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC--------CCCCCCH----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL--------NICEGSE----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~--------~~~~~~~----  234 (266)
                      .+-..++|+|..|+|||||++.+.+...    -+..+...+... .+..++..+.+.....        ..+....    
T Consensus       149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~  224 (428)
T PRK08149        149 GVGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN  224 (428)
T ss_pred             ecCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence            3567899999999999999999987532    244444555543 3455666666654322        1111111    


Q ss_pred             -HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          235 -SERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                       ...+..+.+++++ ||+.||++||+...
T Consensus       225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~  253 (428)
T PRK08149        225 AALVATTVAEYFRDQGKRVVLFIDSMTRY  253 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence             1234456667644 69999999998653

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=97.22  E-value=0.0042  Score=52.81  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=61.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC--------CCCCCHH-
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK--LKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN--------ICEGSES-  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~-  235 (266)
                      .+-..++|+|-.|+|||+|+..+.++...  +.+-+.++++-+.+... ..++..++...-...        .+..... 
T Consensus        67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r  146 (276)
T cd01135          67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER  146 (276)
T ss_pred             ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence            35678999999999999999998877531  22357889999987653 445555555432211        1111111 


Q ss_pred             ----HHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699          236 ----ERAMMLCGQLKK--GKKILFVLDNIWTS  261 (266)
Q Consensus       236 ----~~~~~l~~~L~~--~kr~LlvlDDvw~~  261 (266)
                          .....+.+++++  |++.|+++||+...
T Consensus       147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~  178 (276)
T cd01135         147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNY  178 (276)
T ss_pred             HHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence                123456777764  48999999998653

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.22  E-value=0.0022  Score=60.08  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|+.|+|||||++.+..-.
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999997654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.21  E-value=0.0039  Score=54.10  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        17 REGEVFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            346799999999999999999998764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.21  E-value=0.0038  Score=51.14  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=97.21  E-value=0.0026  Score=58.13  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-H----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-E----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~----  234 (266)
                      .+-..++|+|..|+|||||+..+....... +-+.++++-+.... ...++..++...-..       ...+.+ .    
T Consensus       141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~  219 (461)
T PRK12597        141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR  219 (461)
T ss_pred             ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence            356899999999999999999988876533 56888888887554 344566666543222       111222 1    


Q ss_pred             -HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          235 -SERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       235 -~~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                       ...+..+.+++++  |++.||++|++..
T Consensus       220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR  248 (461)
T PRK12597        220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR  248 (461)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence             1234456777753  5999999999864

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.20  E-value=0.00035  Score=56.58  Aligned_cols=24  Identities=46%  Similarity=0.693  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ||+|.|++|+||||+|+.+.....
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999999876

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.20  E-value=0.0028  Score=55.81  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~~  234 (266)
                      ...+.-|+|..|+|||+|+..+.-....   .. .-..++|+....+|++.++. +++++++.+.+          ..+.
T Consensus       125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~  203 (344)
T PLN03187        125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY  203 (344)
T ss_pred             CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence            4678889999999999999988543221   11 12578999999999999865 56777766321          1233


Q ss_pred             HHHH---HHHHHHHhcCCeEEEEEeCCCCC
Q 045699          235 SERA---MMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       235 ~~~~---~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      +++.   ..+...+..++--|||+|-+...
T Consensus       204 e~~~~~l~~l~~~i~~~~~~LvVIDSital  233 (344)
T PLN03187        204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIAL  233 (344)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence            3333   33333444424558999987643

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.20  E-value=0.0016  Score=55.96  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|||.|.+|+||||+|+.+..-..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999998866543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.20  E-value=0.0031  Score=59.98  Aligned_cols=50  Identities=20%  Similarity=0.374  Sum_probs=41.6

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+.+..+++.. +.++|+.|+||||+|+.+.+...
T Consensus        13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~   63 (647)
T PRK07994         13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN   63 (647)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            346778999999999998887766655 57899999999999999987754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.20  E-value=0.0036  Score=52.83  Aligned_cols=94  Identities=20%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC--------CHH-----------HHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP--------DVK-----------RIQGDVA  222 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~--------~~~-----------~~~~~i~  222 (266)
                      ..-.+++|+|++|+|||||++.+........   .++   ...++  .+.+        +..           +-...++
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v--~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  105 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYV--PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL  105 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEe--ccccccccccChhHHHHHhccccccHHHHHHHH
Confidence            3568999999999999999999987643211   011   12222  2221        111           1123344


Q ss_pred             HHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          223 DQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       223 ~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +.++..      ....|..+. .-.+...|-. +.=+++||++.+..|.
T Consensus       106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral~~-~p~lllLDEPt~~LD~  153 (251)
T PRK09544        106 KRVQAGHLIDAPMQKLSGGETQRVLLARALLN-RPQLLVLDEPTQGVDV  153 (251)
T ss_pred             HHcCChHHHhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCCcCCCH
Confidence            444441      223453333 3345666666 7789999999988775

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.20  E-value=0.0069  Score=55.17  Aligned_cols=86  Identities=23%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLNICE----GSESERAMMLCG  243 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~l~~  243 (266)
                      ...+|.++|..|+||||.+..+......+ .+ .+..+++.. .+...+.++.++.+++.+...    .+.........+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~  171 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE  171 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence            46799999999999999999998876532 22 333343321 112344566666776654322    122222333333


Q ss_pred             HHhcCCeEEEEEeCC
Q 045699          244 QLKKGKKILFVLDNI  258 (266)
Q Consensus       244 ~L~~~kr~LlvlDDv  258 (266)
                      .+.. . =+||+|..
T Consensus       172 ~~~~-~-DvVIIDTA  184 (437)
T PRK00771        172 KFKK-A-DVIIVDTA  184 (437)
T ss_pred             Hhhc-C-CEEEEECC
Confidence            3443 3 45777754

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.20  E-value=0.00074  Score=56.22  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=28.8

Q ss_pred             HHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          159 NDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       159 ~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|..+... ....+++|.|++|+|||||++.+....+
T Consensus        21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            334444333 5678999999999999999999998765

>PTZ00035 Rad51 protein; Provisional

Probab=97.19  E-value=0.0038  Score=55.05  Aligned_cols=93  Identities=16%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc---cc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK---LK-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~  233 (266)
                      ....++.|+|..|+|||||+..+.-....   .. .-..++|+.....+++.++ ..++++++...          ...+
T Consensus       116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~  194 (337)
T PTZ00035        116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN  194 (337)
T ss_pred             CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence            35689999999999999999988654331   11 1235679988888888774 45666665521          1122


Q ss_pred             HHHHHHH---HHHHHhcCCeEEEEEeCCCCC
Q 045699          234 ESERAMM---LCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       234 ~~~~~~~---l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      .+++...   +...+..++--|||+|-+...
T Consensus       195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSital  225 (337)
T PTZ00035        195 HEHQMQLLSQAAAKMAEERFALLIVDSATAL  225 (337)
T ss_pred             HHHHHHHHHHHHHHhhccCccEEEEECcHHh
Confidence            3333333   333444435568999988753

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.19  E-value=0.0033  Score=59.64  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ....+++|.+..+..|.+++..+++.. +.++|+.|+||||+|+.+.+....
T Consensus        13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954         13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346678999999999988887766654 889999999999999999877643

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=97.19  E-value=0.0048  Score=47.58  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             cchhhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHh
Q 045699            2 AHFIFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAG   81 (266)
Q Consensus         2 ae~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~e   81 (266)
                      ||.+++++.   +...+.+.+.+....+.....+.-++.|.++++.+.-.+.+.+..+...+..-+.=+.++.+...+++
T Consensus         3 ~eL~~gaal---G~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~   79 (147)
T PF05659_consen    3 AELVGGAAL---GAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGK   79 (147)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence            344554444   33344444445555555555666666666676666666666555444434444667788888888888


Q ss_pred             hhHHHHHHhhcccccCCCCChhHHhHHHHHHHHHHHHHHHHh
Q 045699           82 KLIEDEEKEKKKCLKGLCPNLMNRYQLSKKAAWEVKAIAGLL  123 (266)
Q Consensus        82 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~l~  123 (266)
                      +++..       |....+.++...++.+++|+++.+.+....
T Consensus        80 ~LV~k-------~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~  114 (147)
T PF05659_consen   80 ELVEK-------CSKVRRWNLYKKPRYARKIEELEESLRRFI  114 (147)
T ss_pred             HHHHH-------hccccHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence            88875       333333466777888999999888776554

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.18  E-value=0.0013  Score=60.17  Aligned_cols=77  Identities=14%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK  249 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k  249 (266)
                      ...+.|+|..|+|||+|++.+.+.......--.+++++      ..++...+...++...      .....+.+.++  +
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~  206 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--Q  206 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--c
Confidence            45689999999999999999999754222112333433      3456666666654210      11223344444  3


Q ss_pred             eEEEEEeCCCC
Q 045699          250 KILFVLDNIWT  260 (266)
Q Consensus       250 r~LlvlDDvw~  260 (266)
                      .-+|||||+-.
T Consensus       207 ~dvLiIDDiq~  217 (450)
T PRK14087        207 NDVLIIDDVQF  217 (450)
T ss_pred             CCEEEEecccc
Confidence            44778888853

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.18  E-value=0.0021  Score=53.13  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE  207 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  207 (266)
                      ....+-|+|..|+|||.|.+.+++.......-..++|++
T Consensus        33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~   71 (219)
T PF00308_consen   33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS   71 (219)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence            346789999999999999999999865332222344544

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK09183 transposase/IS protein; Provisional

Probab=97.18  E-value=0.0017  Score=55.10  Aligned_cols=27  Identities=37%  Similarity=0.391  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+.|+|+.|+|||+||..+.+...
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~  127 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAV  127 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            346788999999999999999987754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.18  E-value=0.00042  Score=56.78  Aligned_cols=27  Identities=33%  Similarity=0.549  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+..+|+|.|.+|+|||||++.+....
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999875

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.18  E-value=0.0034  Score=49.65  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+..-..
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3567999999999999999999988653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00959 ffh signal recognition particle protein

Probab=97.17  E-value=0.0043  Score=56.33  Aligned_cols=26  Identities=31%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...++.++|+.|+||||.+..+....
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l  123 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYL  123 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            46799999999999999987776654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PTZ00301 uridine kinase; Provisional

Probab=97.17  E-value=0.00072  Score=55.50  Aligned_cols=26  Identities=31%  Similarity=0.599  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|+|.|.+|+||||||+.+.+...
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence            57899999999999999999987653

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.16  E-value=0.0046  Score=53.86  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      ...++-|+|.+|+|||||+..+........    .-..++|+.....+++.++. ++++.++.+.          ...+.
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~  172 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS  172 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence            468899999999999999999976643211    11378999999988888754 5555554421          01111


Q ss_pred             H---HHHHHHHHHHhcCC--eEEEEEeCCCCC
Q 045699          235 S---ERAMMLCGQLKKGK--KILFVLDNIWTS  261 (266)
Q Consensus       235 ~---~~~~~l~~~L~~~k--r~LlvlDDvw~~  261 (266)
                      .   .+...+.+.+...+  --+||+|-+...
T Consensus       173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~  204 (310)
T TIGR02236       173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTSH  204 (310)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEecchHh
Confidence            1   23445566665522  348999987654

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd01394 radB RadB

Probab=97.16  E-value=0.0032  Score=51.83  Aligned_cols=88  Identities=16%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH----hcCC---CCCCCHHHH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ----LSLN---ICEGSESER---  237 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~----~~~~---~~~~~~~~~---  237 (266)
                      ....++.|.|.+|+|||||+..+.....  ..-..++|++....+.  +-+++++..    ....   ....+..++   
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA   92 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence            3468999999999999999999987653  2234677887665553  223344332    1111   112222233   


Q ss_pred             HHHHHHHHhcCCeEEEEEeCCCC
Q 045699          238 AMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       238 ~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ...+...+.. +.-+||+|-+..
T Consensus        93 ~~~~~~~~~~-~~~lvvIDsi~~  114 (218)
T cd01394          93 IQETETFADE-KVDLVVVDSATA  114 (218)
T ss_pred             HHHHHHHHhc-CCcEEEEechHH
Confidence            2344445554 566899998754

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.15  E-value=0.0031  Score=59.09  Aligned_cols=27  Identities=33%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~   51 (530)
T PRK15064         25 GGGNRYGLIGANGCGKSTFMKILGGDL   51 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

>PRK06547 hypothetical protein; Provisional

Probab=97.15  E-value=0.00081  Score=53.44  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=27.4

Q ss_pred             HHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          163 DALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       163 ~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+......+|+|.|+.|+||||+|+.+.....
T Consensus         8 ~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547          8 ARLCGGGMITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            334456788999999999999999999988754

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.15  E-value=0.0022  Score=51.12  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|.|+|++|+||||+|+.+.....
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            578999999999999999988653

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.15  E-value=0.0023  Score=57.93  Aligned_cols=89  Identities=17%  Similarity=0.315  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      ..-..++|+|.+|+|||||++.+.+..    +.+..++..+.+. ....+++.+....-..       ...+.+ ..   
T Consensus       153 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~  228 (433)
T PRK07594        153 GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR  228 (433)
T ss_pred             CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence            456799999999999999999998754    3455666666654 3344555554321111       111111 11   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++++ |++.||++||+..
T Consensus       229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr  256 (433)
T PRK07594        229 ALFVATTIAEFFRDNGKRVVLLADSLTR  256 (433)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence              123446677754 6999999999864

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.15  E-value=0.0043  Score=52.98  Aligned_cols=26  Identities=35%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56799999999999999999997663

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.15  E-value=0.0037  Score=58.95  Aligned_cols=49  Identities=18%  Similarity=0.286  Sum_probs=41.8

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus        11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46678999999999999988777665 68999999999999999988754

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.14  E-value=0.002  Score=58.21  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC--------CCCCCHH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN--------ICEGSES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~--------~~~~~~~---  235 (266)
                      ..-..++|+|.+|+|||||++.+....+    .+..+.+.+.. .-...++..+.+..-+..        .+.....   
T Consensus       138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~  213 (418)
T TIGR03498       138 CRGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ  213 (418)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence            3557899999999999999998887643    23333344443 334445555554433221        1111221   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                        ..+..+.+++++ |+..||++||+...
T Consensus       214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~  242 (418)
T TIGR03498       214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF  242 (418)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence              123446777754 69999999998653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.14  E-value=0.005  Score=54.50  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=40.6

Q ss_pred             CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...+. ..+-++|+.|+||||+|+.+.....
T Consensus        12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999998876554 4678899999999999999987753

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.13  E-value=0.0032  Score=60.36  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC--------CHHH------------HHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP--------DVKR------------IQGDVAD  223 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~--------~~~~------------~~~~i~~  223 (266)
                      ....+++|+|++|+|||||.+.+....... +.  ++ ..-.-.++|..        +...            -...++.
T Consensus       336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  415 (638)
T PRK10636        336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG  415 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence            356899999999999999999998864321 11  11 11111223321        1111            1123444


Q ss_pred             HhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          224 QLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       224 ~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .++..       ....|..+.. -.|...+-. +.-+|+||++.+.+|.
T Consensus       416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~-~p~lLlLDEPt~~LD~  463 (638)
T PRK10636        416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQ-RPNLLLLDEPTNHLDL  463 (638)
T ss_pred             HcCCChhHhcCchhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence            44431       1234544433 345666666 8889999999999875

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.13  E-value=0.0018  Score=50.28  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~  228 (266)
                      +|.|-|++|+||||+|+.+.+....+         +    .+.-.++++|++..|..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~----vsaG~iFR~~A~e~gms   45 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLK---------L----VSAGTIFREMARERGMS   45 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCc---------e----eeccHHHHHHHHHcCCC
Confidence            68999999999999999999986532         1    13456888898888773

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=97.12  E-value=0.0038  Score=54.57  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=55.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC-------C-CCCCCHH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSL-------N-ICEGSES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~-------~-~~~~~~~---  235 (266)
                      .....++|+|..|+|||||++.+.+...    -++.+...+.. .-+..++....+..-+.       . .+.....   
T Consensus        67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~  142 (326)
T cd01136          67 GKGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK  142 (326)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence            3457899999999999999999987643    23445555543 33455555555554322       1 1111111   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        .....+.+++.+ ||..||++||+..
T Consensus       143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr  170 (326)
T cd01136         143 AAYTATAIAEYFRDQGKDVLLLMDSLTR  170 (326)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence              223445666643 6999999999764

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0015  Score=56.23  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKL--KVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKK  247 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~  247 (266)
                      -++|.++||+|.|||+|.+.++....++  +.+.....+.+...    .++    .....+ .+.-...+...+.+.+.+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLF----SKWFsE-SgKlV~kmF~kI~ELv~d  247 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLF----SKWFSE-SGKLVAKMFQKIQELVED  247 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHH----HHHHhh-hhhHHHHHHHHHHHHHhC
Confidence            3789999999999999999999997665  23433344443321    111    111110 111245566777777777


Q ss_pred             CCeEE--EEEeCCCC
Q 045699          248 GKKIL--FVLDNIWT  260 (266)
Q Consensus       248 ~kr~L--lvlDDvw~  260 (266)
                       +.+|  +++|+|.+
T Consensus       248 -~~~lVfvLIDEVES  261 (423)
T KOG0744|consen  248 -RGNLVFVLIDEVES  261 (423)
T ss_pred             -CCcEEEEEeHHHHH
Confidence             4444  34777753

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.12  E-value=0.0044  Score=53.98  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      ..+++-|+|+.|+||||||-.+.....  ..-..++|+...+.+++..     +.++|.+.+      ..+.++....+.
T Consensus        52 ~G~ivEi~G~~ssGKttLaL~~ia~~q--~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e  124 (322)
T PF00154_consen   52 RGRIVEIYGPESSGKTTLALHAIAEAQ--KQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE  124 (322)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH--HTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred             cCceEEEeCCCCCchhhhHHHHHHhhh--cccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence            467999999999999999999988754  3346788999988877653     445555332      234555556666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ..++.+.--++|+|-|-..
T Consensus       125 ~lirsg~~~lVVvDSv~al  143 (322)
T PF00154_consen  125 QLIRSGAVDLVVVDSVAAL  143 (322)
T ss_dssp             HHHHTTSESEEEEE-CTT-
T ss_pred             HHhhcccccEEEEecCccc
Confidence            7777756678999987543

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=97.12  E-value=0.0046  Score=56.20  Aligned_cols=92  Identities=16%  Similarity=0.273  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      ..-..++|+|..|+|||+|+..+...... .+-+.++++-+.+... ..++..++...-..       ...+.+ ..   
T Consensus       136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~  214 (449)
T TIGR03305       136 ERGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR  214 (449)
T ss_pred             ccCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence            35678999999999999999998776542 3457888998876653 44566665543221       111222 11   


Q ss_pred             --HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++++  |++.||++||+..
T Consensus       215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR  243 (449)
T TIGR03305       215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR  243 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence              234456788875  6999999999865

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.12  E-value=0.0047  Score=53.73  Aligned_cols=27  Identities=30%  Similarity=0.474  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||.+.+..-.+
T Consensus        32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~   58 (306)
T PRK13537         32 RGECFGLLGPNGAGKTTTLRMLLGLTH   58 (306)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            457999999999999999999987643

>PRK13409 putative ATPase RIL; Provisional

Probab=97.11  E-value=0.0031  Score=59.78  Aligned_cols=27  Identities=41%  Similarity=0.586  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+....
T Consensus        97 ~~Gev~gLvG~NGaGKSTLlkiL~G~l  123 (590)
T PRK13409         97 KEGKVTGILGPNGIGKTTAVKILSGEL  123 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            346799999999999999999997764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.11  E-value=0.0051  Score=54.70  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        29 ~Ge~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650         29 DGEFIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            45789999999999999999997764

>PRK10867 signal recognition particle protein; Provisional

Probab=97.11  E-value=0.0053  Score=55.79  Aligned_cols=27  Identities=37%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|++|+||||.+..+.....
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~  125 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLK  125 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            468999999999999997777765543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.11  E-value=0.0061  Score=50.77  Aligned_cols=87  Identities=17%  Similarity=0.238  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------  229 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------  229 (266)
                      +...++.|.|.+|+|||+|+.++.....  ..=..++|++...+  +.++.+.+ .+++...                  
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~   97 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG   97 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence            3568999999999999999999854432  12357888888754  45555543 3343211                  


Q ss_pred             ---CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          230 ---CEGSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       230 ---~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                         .......+...+...+...+.-++|+|.+.
T Consensus        98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t  130 (234)
T PRK06067         98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT  130 (234)
T ss_pred             cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence               111235566667777764345589999876

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.11  E-value=0.0044  Score=51.01  Aligned_cols=87  Identities=21%  Similarity=0.420  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH----
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES----  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~----  235 (266)
                      +-..++|+|..|+|||+|++.+.+...    -++.+++.+++.. ...++.+++...-..       .....+ ..    
T Consensus        14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~   89 (215)
T PF00006_consen   14 RGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA   89 (215)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred             cCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence            457899999999999999999998864    3455888887653 445555555332111       111122 11    


Q ss_pred             -HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          236 -ERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       236 -~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                       .....+.+++++ ||..|+++||+.
T Consensus        90 ~~~a~t~AEyfrd~G~dVlli~Dslt  115 (215)
T PF00006_consen   90 PYTALTIAEYFRDQGKDVLLIIDSLT  115 (215)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred             hccchhhhHHHhhcCCceeehhhhhH
Confidence             122334555553 599999999974

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.10  E-value=0.0058  Score=56.34  Aligned_cols=49  Identities=22%  Similarity=0.346  Sum_probs=40.4

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|.+..++.|.+.+..+++. -+-++|+.|+||||+|+.+....
T Consensus        10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964         10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence            34667899999888888888766665 78899999999999999997643

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.10  E-value=0.0024  Score=62.22  Aligned_cols=48  Identities=29%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.+.+.+.    .         ...+-+.++|+.|+||||||+.+.+...
T Consensus       177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~  237 (733)
T TIGR01243       177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG  237 (733)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence            4557888888877766542    1         2345688999999999999999998764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.10  E-value=0.0048  Score=55.75  Aligned_cols=25  Identities=32%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+++++|++|+||||++..+...
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999887664

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=97.10  E-value=0.0043  Score=52.94  Aligned_cols=92  Identities=23%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hcCC--CCCCC---HHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ-LSLN--ICEGS---ESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-~~~~--~~~~~---~~~~~~~l  241 (266)
                      +...++=|+|+.|+||||+|-+++-...  ..-..++|+...+.+++..+. +++.. +..-  ....+   ..++...+
T Consensus        58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~  134 (279)
T COG0468          58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL  134 (279)
T ss_pred             ccceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence            3568999999999999999999877654  344588999999999998754 45544 3220  01112   23334444


Q ss_pred             HHHHhcCCeEEEEEeCCCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      .....+ +--|||+|-|.....
T Consensus       135 ~~~~~~-~i~LvVVDSvaa~~r  155 (279)
T COG0468         135 ARSGAE-KIDLLVVDSVAALVR  155 (279)
T ss_pred             HHhccC-CCCEEEEecCcccch
Confidence            444444 567999998876543

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.09  E-value=0.0033  Score=55.45  Aligned_cols=92  Identities=14%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL---K-VCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC----------EGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~----------~~~  233 (266)
                      ....++-|+|.+|+|||+|+..++-.....   . .-..++|+....+|++.++ .+|+++++.+..          ..+
T Consensus       121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~  199 (342)
T PLN03186        121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYN  199 (342)
T ss_pred             cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCC
Confidence            346888899999999999998877543211   1 1237899999999999886 467777765321          122


Q ss_pred             HHHHHHH---HHHHHhcCCeEEEEEeCCCC
Q 045699          234 ESERAMM---LCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       234 ~~~~~~~---l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .+++...   +...+...+--|||+|-+-.
T Consensus       200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a  229 (342)
T PLN03186        200 TDHQSELLLEAASMMAETRFALMIVDSATA  229 (342)
T ss_pred             HHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence            3333322   22334433566899998754

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.0021  Score=53.23  Aligned_cols=95  Identities=23%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc--------------------------------cCCCe---EEEEEeCC---
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL--------------------------------KVCDE---VVFVEVSR---  210 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------------------------------~~f~~---~~wv~v~~---  210 (266)
                      .-..-.|+|++|+|||||.+.+..+....                                .+|..   +.=+-+|.   
T Consensus        56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~  135 (257)
T COG1119          56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA  135 (257)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccc
Confidence            34678899999999999999996653210                                01111   00001111   


Q ss_pred             -------CCCHH--HHHHHHHHHhcC------CCCCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          211 -------TPDVK--RIQGDVADQLSL------NICEGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       211 -------~~~~~--~~~~~i~~~~~~------~~~~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                             ..+..  .....+++.++.      .+...|..+ ....+.+.|-. +.=|+|||+..+-.|+
T Consensus       136 siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~-~P~LLiLDEP~~GLDl  204 (257)
T COG1119         136 SIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK-DPELLILDEPAQGLDL  204 (257)
T ss_pred             cccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc-CCCEEEecCccccCCh
Confidence                   11222  233445666655      234555433 34556777777 8889999999887765

>PRK05922 type III secretion system ATPase; Validated

Probab=97.09  E-value=0.0045  Score=56.06  Aligned_cols=89  Identities=18%  Similarity=0.325  Sum_probs=55.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCC-H----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSLN-------ICEGS-E----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~~-------~~~~~-~----  234 (266)
                      ..-..++|+|.+|+|||||.+.+.+..+    .+...++.++.. ....+++.+.......+       ..+.+ .    
T Consensus       155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~  230 (434)
T PRK05922        155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI  230 (434)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence            3567899999999999999999987542    344455444442 23344554444333221       11111 1    


Q ss_pred             -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 -SERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       ...+..+.+++++ |++.||++||+..
T Consensus       231 a~~~a~tiAEyfrd~G~~VLl~~DslTR  258 (434)
T PRK05922        231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR  258 (434)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence             1234456777754 6999999999865

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.09  E-value=0.0021  Score=50.00  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|.+|+|||||++.+.....
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999988653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.08  E-value=0.0044  Score=52.17  Aligned_cols=63  Identities=21%  Similarity=0.219  Sum_probs=39.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE-------EeCCCCCHHHHH--HHHHHHhcCCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV-------EVSRTPDVKRIQ--GDVADQLSLNIC  230 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-------~v~~~~~~~~~~--~~i~~~~~~~~~  230 (266)
                      ++...|.++||.|+||||..|.++.....+..-..++-.       ..+.+.+.++..  +++.++.+...+
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN   88 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN   88 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence            356788999999999999999999987643322222221       222334455443  467777666433

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.08  E-value=0.0036  Score=59.98  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|++|+|||||.+.+....
T Consensus        25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~   51 (638)
T PRK10636         25 NPGQKVGLVGKNGCGKSTLLALLKNEI   51 (638)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346789999999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.08  E-value=0.0038  Score=59.84  Aligned_cols=27  Identities=33%  Similarity=0.523  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|++|+|||||.+.+....
T Consensus        27 ~~Ge~v~LvG~NGsGKSTLLriiaG~~   53 (635)
T PRK11147         27 EDNERVCLVGRNGAGKSTLMKILNGEV   53 (635)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            356799999999999999999998864

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.08  E-value=0.003  Score=59.93  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=40.5

Q ss_pred             CcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|..++....+ ..+.++|+.|+||||+|+.+.....
T Consensus        14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            466789999999999888876555 4568999999999999999987754

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.08  E-value=0.0034  Score=56.86  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=57.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCCH-H---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGSE-S---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~~-~---  235 (266)
                      .+-..++|+|..|+|||||.+.+.+...    -+.++++.+.+... ..++....+..-+.       ...+.+. .   
T Consensus       160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~  235 (439)
T PRK06936        160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK  235 (439)
T ss_pred             cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence            3567899999999999999999998653    35778888876543 33444443332111       1112221 1   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++++ ||+.||++||+..
T Consensus       236 a~~~a~tiAEyfrd~G~~Vll~~DslTR  263 (439)
T PRK06936        236 AGFVATSIAEYFRDQGKRVLLLMDSVTR  263 (439)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence              123446677754 6999999999864

>TIGR00763 lon ATP-dependent protease La

Probab=97.07  E-value=0.0031  Score=61.77  Aligned_cols=46  Identities=24%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             cccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|.+..++.|.+++.      ..+..++.++|+.|+|||++|+.+.+...
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~  372 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN  372 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            46788888888887653      22446899999999999999999999864

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.07  E-value=0.0069  Score=49.31  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|.+|+|||||++.+.....
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            3567999999999999999999987643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.06  E-value=0.0021  Score=59.04  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      ...+.|+|+.|+|||+|++.+.+....+..--.++|++.
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~  186 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS  186 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence            467899999999999999999998753211223445543

>PRK07667 uridine kinase; Provisional

Probab=97.06  E-value=0.001  Score=53.87  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             HHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          159 NDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       159 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|.+.+.  ..+..+|+|-|.+|+||||+|+.+.....
T Consensus         4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667          4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444443  24457999999999999999999998764

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.06  E-value=0.0061  Score=52.13  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|.+|+|||||++.+..-.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (274)
T PRK13647         29 PEGSKTALLGPNGAGKSTLLLHLNGIY   55 (274)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356899999999999999999998654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.06  E-value=0.004  Score=57.23  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++++|++|+||||++..+.....
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~  281 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCV  281 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHH
Confidence            47999999999999999999987653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.05  E-value=0.0061  Score=52.70  Aligned_cols=93  Identities=26%  Similarity=0.339  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCC------------eEEEEEeCCCC------CH------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCD------------EVVFVEVSRTP------DV------------  214 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~------------~~~wv~v~~~~------~~------------  214 (266)
                      .-.++++.|++|+|||||.+.+....+...    .+.            .+.++  ++.+      +.            
T Consensus        30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~--~~~~~~~~~lT~~e~l~~~~~l~~  107 (293)
T COG1131          30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV--PQEPSLYPELTVRENLEFFARLYG  107 (293)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE--ccCCCCCccccHHHHHHHHHHHhC
Confidence            457999999999999999999988754321    011            12222  2221      11            


Q ss_pred             ------HHHHHHHHHHhcCCC------CCCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          215 ------KRIQGDVADQLSLNI------CEGSES-ERAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       215 ------~~~~~~i~~~~~~~~------~~~~~~-~~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            .+-..++++.++...      ...|.. ...-.+...|-. +.=|++||+..+-+|.
T Consensus       108 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~-~P~lliLDEPt~GLDp  169 (293)
T COG1131         108 LSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH-DPELLILDEPTSGLDP  169 (293)
T ss_pred             CChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc-CCCEEEECCCCcCCCH
Confidence                  223445666666532      223322 223345666666 7889999999987763

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.05  E-value=0.076  Score=46.67  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      ...+.++|..|+|||+||..+.+....++  -.++|+++
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~  219 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA  219 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence            37799999999999999999999875322  24555554

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.05  E-value=0.0053  Score=54.85  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            46799999999999999999998764

>PRK08233 hypothetical protein; Provisional

Probab=97.05  E-value=0.0006  Score=54.25  Aligned_cols=26  Identities=35%  Similarity=0.509  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|+|.|++|+||||||+.+.....
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            47899999999999999999998753

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.04  E-value=0.11  Score=47.10  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|+.|+||||++..+.....
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~  125 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ  125 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999998888876554

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.04  E-value=0.0082  Score=53.46  Aligned_cols=39  Identities=38%  Similarity=0.470  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhCCC----CCcEEEEEcCCCCcHHH-HHHHHHHHh
Q 045699          156 SILNDALDALSNP----NVDVIGLCGVGGIGKTT-LAKIVCDQA  194 (266)
Q Consensus       156 ~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTt-La~~v~~~~  194 (266)
                      .....+..|+.++    +-++|.+||+.|+|||| ||+....-.
T Consensus       185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3445555565544    48999999999999965 777765544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.04  E-value=0.0063  Score=56.79  Aligned_cols=94  Identities=22%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c--CCC---------------eEEEEEeCCCC------CHH--------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K--VCD---------------EVVFVEVSRTP------DVK--------  215 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~--~f~---------------~~~wv~v~~~~------~~~--------  215 (266)
                      ..-.+++|+|++|+|||||++.+..-.... +  .|+               .+.|+  .|.+      +..        
T Consensus        35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~~~~~~tv~e~l~~~~~  112 (510)
T PRK15439         35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLV--PQEPLLFPNLSVKENILFGLP  112 (510)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE--eccCccCCCCcHHHHhhcccc
Confidence            356799999999999999999998764211 1  011               11222  2221      111        


Q ss_pred             ------HHHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 ------RIQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 ------~~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            +-..+++..++..      ....|..+. .-.|...|-. +.-+|+||+..+.+|.
T Consensus       113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~-~p~lllLDEPt~~LD~  173 (510)
T PRK15439        113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR-DSRILILDEPTASLTP  173 (510)
T ss_pred             cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCCCCCCH
Confidence                  1223455555552      123454333 3446666776 7889999999998774

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=97.04  E-value=0.0048  Score=56.26  Aligned_cols=92  Identities=21%  Similarity=0.336  Sum_probs=60.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      ..-..++|+|..|+|||||+..+....... +-+.++++-+.... ...++.++++..-..       ...+.+ ..   
T Consensus       142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~  220 (463)
T PRK09280        142 AKGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR  220 (463)
T ss_pred             ccCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence            356889999999999999999987765432 23567888887654 345566666553222       111222 11   


Q ss_pred             --HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                        .....+.+++++  ||+.||++||+..
T Consensus       221 a~~~a~tiAEyfrd~~G~~VLll~DslTR  249 (463)
T PRK09280        221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR  249 (463)
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence              224456777743  6999999999864

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0011  Score=59.24  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc------CCCeEEEE------EeCCCCCHHHHHHH-----------HHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK------VCDEVVFV------EVSRTPDVKRIQGD-----------VADQL  225 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~f~~~~wv------~v~~~~~~~~~~~~-----------i~~~~  225 (266)
                      --..|+|||++|+||+||.+.+.......+      |--.+-|.      .....-++.+.+..           -+..+
T Consensus       612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f  691 (807)
T KOG0066|consen  612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF  691 (807)
T ss_pred             ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence            357899999999999999999987653321      11122233      22222233333221           12222


Q ss_pred             cC-------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          226 SL-------NICEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       226 ~~-------~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      |.       .+...+..+-+......|.-+..-+||||+..+.+|.+
T Consensus       692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIE  738 (807)
T KOG0066|consen  692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIE  738 (807)
T ss_pred             hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchh
Confidence            22       22344444444444444433377899999999998865

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.04  E-value=0.0042  Score=60.86  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+.+...
T Consensus        13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999987766654 78999999999999999988764

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.0014  Score=52.30  Aligned_cols=25  Identities=36%  Similarity=0.389  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      .|.|+|++|+||||+|+.+.+....
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i   26 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGL   26 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.04  E-value=0.00061  Score=50.73  Aligned_cols=22  Identities=45%  Similarity=0.791  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |.|.|+.|+||||+|+.+....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998874

...

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.03  E-value=0.0022  Score=57.66  Aligned_cols=96  Identities=26%  Similarity=0.346  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CC-CeEE-----EEEeCCCCCHHHHHHHHHHH-hcC-------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VC-DEVV-----FVEVSRTPDVKRIQGDVADQ-LSL-------------  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f-~~~~-----wv~v~~~~~~~~~~~~i~~~-~~~-------------  227 (266)
                      ...||+|+|++|+||||+++.+..-.+... .+ +..+     ++....+-+..+++..+... ++.             
T Consensus       366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l  445 (591)
T COG1245         366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL  445 (591)
T ss_pred             cceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence            457999999999999999999987654221 11 1111     22223334566777666654 222             


Q ss_pred             ------CCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          228 ------NICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       228 ------~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                            .....|..+++.. +...|.. .-=|-+||+....+|-|
T Consensus       446 ~~i~e~~v~~LSGGELQRvaIaa~L~r-eADlYllDEPSA~LDvE  489 (591)
T COG1245         446 EDLLERPVDELSGGELQRVAIAAALSR-EADLYLLDEPSAYLDVE  489 (591)
T ss_pred             HHHHhcccccCCchhHHHHHHHHHhcc-ccCEEEecCchhhccHH
Confidence                  2234555566543 4556665 66788888887776643

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.03  E-value=0.0043  Score=56.42  Aligned_cols=88  Identities=17%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcCC--------CCCCCHH----
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSLN--------ICEGSES----  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~~--------~~~~~~~----  235 (266)
                      .-..++|+|..|+|||||++.+.+..    ..+.++...+.... ...++...+...-+..        .+.....    
T Consensus       167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a  242 (451)
T PRK05688        167 RGQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA  242 (451)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence            45789999999999999999997643    23454555555443 3445555554443221        1122221    


Q ss_pred             -HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 -ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 -~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       ..+..+.+++++ |++.||++||+..
T Consensus       243 ~~~a~aiAEyfrd~G~~VLl~~DslTR  269 (451)
T PRK05688        243 AMYCTRIAEYFRDKGKNVLLLMDSLTR  269 (451)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEecchhH
Confidence             223446677754 6999999999864

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.02  E-value=0.0059  Score=54.95  Aligned_cols=47  Identities=11%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             cccccchHHHHHHHHHHhCCCC----------CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPN----------VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|.+..++.|.+++..+.          ..-+.++|+.|+|||++|+.+....
T Consensus         4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l   60 (394)
T PRK07940          4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL   60 (394)
T ss_pred             hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3467898888888888886543          3457899999999999999997764

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.02  E-value=0.0057  Score=49.78  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+++|.|++|+|||||++.+....
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            899999999999999999997654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.02  E-value=0.0048  Score=58.25  Aligned_cols=28  Identities=36%  Similarity=0.506  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+.....
T Consensus        31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~   58 (556)
T PRK11819         31 FPGAKIGVLGLNGAGKSTLLRIMAGVDK   58 (556)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567999999999999999999998753

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.02  E-value=0.0078  Score=54.35  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+....
T Consensus        27 ~~Geiv~liGpNGaGKSTLLk~LaGll   53 (402)
T PRK09536         27 REGSLVGLVGPNGAGKTTLLRAINGTL   53 (402)
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            356799999999999999999998754

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.02  E-value=0.0043  Score=57.33  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=34.3

Q ss_pred             cccccchHHHHHHHHHHh---C-------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDAL---S-------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.+.+..   .       -...+-|.++|+.|+|||.+|+.+.+...
T Consensus       227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~  284 (489)
T CHL00195        227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ  284 (489)
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            445677776666554421   1       12346688999999999999999999764

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.01  E-value=0.0022  Score=48.79  Aligned_cols=42  Identities=29%  Similarity=0.369  Sum_probs=32.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQG  219 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  219 (266)
                      |-++|+.|+|||+||+.+.....     ....-+.+++..+..++..
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g   43 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG   43 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence            67899999999999999999863     2344568888888887664

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.01  E-value=0.0084  Score=49.53  Aligned_cols=27  Identities=41%  Similarity=0.635  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|.+|+|||||++.+....
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.01  E-value=0.0084  Score=51.11  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356899999999999999999998764

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.01  E-value=0.0064  Score=50.32  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|.+|+|||||++.+....
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45799999999999999999998753

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK04328 hypothetical protein; Provisional

Probab=97.01  E-value=0.0058  Score=51.53  Aligned_cols=87  Identities=18%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------  229 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------  229 (266)
                      +.-.++.|.|.+|+|||+|+..+....-  ..-+..+|++....+  .++.+ .+++++.+.                  
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~~--~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~   95 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEHP--VQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG   95 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCCH--HHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence            3568999999999999999998655432  234667888876643  34333 334443310                  


Q ss_pred             -------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          230 -------------CEGSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       230 -------------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                                   +..+..++...+.+.++..+.-++|+|-+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt  138 (249)
T PRK04328         96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS  138 (249)
T ss_pred             cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence                         112344555666666654344478898875

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.00  E-value=0.0073  Score=52.41  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+....
T Consensus        26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~   52 (301)
T TIGR03522        26 QKGRIVGFLGPNGAGKSTTMKIITGYL   52 (301)
T ss_pred             eCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.00  E-value=0.0062  Score=54.44  Aligned_cols=27  Identities=37%  Similarity=0.417  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++|+++|++|+||||++..+.....
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            357999999999999999999977654

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.00  E-value=0.0071  Score=51.27  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=60.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC-------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN-------------------  228 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~-------------------  228 (266)
                      +..+++.|.|.+|+|||+++.++.....  ..+..++||+....+  ..+.+...+ ++..                   
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~   95 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSE   95 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence            5679999999999999999999888765  358899999988764  444444332 3220                   


Q ss_pred             CC--------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          229 IC--------EGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       229 ~~--------~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ..        ..+...+...+.+..+.-+...+|+|.+..
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~  135 (260)
T COG0467          96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE  135 (260)
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence            00        123455666777776653567788888763

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.99  E-value=0.0065  Score=49.93  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|.+|+|||||++.+....
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=96.99  E-value=0.0033  Score=57.50  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+.|+|+.|+|||+|++.+.+...
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~  166 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALR  166 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999875

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.98  E-value=0.0098  Score=52.82  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         23 AQGITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45799999999999999999998764

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=96.98  E-value=0.0073  Score=51.34  Aligned_cols=90  Identities=13%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HHH--
Q 045699          169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ESE--  236 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~~--  236 (266)
                      +-..++|+|..|+|||+|| ..+.+...   .-..++++.+.+... ..++.+++...-..       ...+.+ ...  
T Consensus        68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~---~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~  144 (274)
T cd01132          68 RGQRELIIGDRQTGKTAIAIDTIINQKG---KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL  144 (274)
T ss_pred             cCCEEEeeCCCCCCccHHHHHHHHHhcC---CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence            5678999999999999995 66766431   223347777776543 44555555543211       111111 111  


Q ss_pred             ---HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          237 ---RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       237 ---~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                         .+..+.+++++ |+..||++||+...
T Consensus       145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~  173 (274)
T cd01132         145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ  173 (274)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence               23445566654 59999999998653

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.97  E-value=0.00059  Score=55.37  Aligned_cols=23  Identities=43%  Similarity=0.713  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +|+|.|++|+|||||++.+....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998864

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0036  Score=58.47  Aligned_cols=48  Identities=23%  Similarity=0.299  Sum_probs=36.1

Q ss_pred             cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++-|.++.+.+|-+...             -...+=|..+|++|||||++|+.+.+..+
T Consensus       433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~  493 (693)
T KOG0730|consen  433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG  493 (693)
T ss_pred             hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc
Confidence            4556677777766654432             13567788999999999999999999865

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.96  E-value=0.0033  Score=57.18  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-..++|+|++|+||||||+.+..-.
T Consensus       360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w  386 (580)
T COG4618         360 QAGEALGIIGPSGSGKSTLARLLVGIW  386 (580)
T ss_pred             cCCceEEEECCCCccHHHHHHHHHccc
Confidence            356799999999999999999997653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.96  E-value=0.00083  Score=51.19  Aligned_cols=23  Identities=48%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +|.++|+.|+||||+|+.+....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            57899999999999999998764

...

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.94  E-value=0.0093  Score=57.61  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD--VKRIQGDVADQLSLN  228 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~~  228 (266)
                      ..+++++|++|+||||++.++.......+....+..++.. .+.  ..+-++...+.++.+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvp  244 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVP  244 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCC
Confidence            4799999999999999888887665321111234444332 222  334444555555543

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.94  E-value=0.01  Score=54.91  Aligned_cols=49  Identities=20%  Similarity=0.261  Sum_probs=40.4

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..+..|.+++...++.. +.++|+.|+||||+|+.+.....
T Consensus        14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35678899999999999987666554 56899999999999999987653

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.94  E-value=0.0045  Score=47.63  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV  206 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv  206 (266)
                      ...++.+.|+.|+||+||..-+.......-.|...+|+
T Consensus        27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l   64 (213)
T COG4136          27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL   64 (213)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE
Confidence            46799999999999999999888876633233446777

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=96.94  E-value=0.0078  Score=54.80  Aligned_cols=93  Identities=19%  Similarity=0.333  Sum_probs=61.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      .+-..++|+|..|+|||||+..+...... ++-+.++++-+.... ...++..++...-..       ...+.+ ..   
T Consensus       141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~  219 (461)
T TIGR01039       141 AKGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR  219 (461)
T ss_pred             ccCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence            35688999999999999999998876542 223578888887654 345666666543221       111222 21   


Q ss_pred             --HHHHHHHHHHhc--CCeEEEEEeCCCCC
Q 045699          236 --ERAMMLCGQLKK--GKKILFVLDNIWTS  261 (266)
Q Consensus       236 --~~~~~l~~~L~~--~kr~LlvlDDvw~~  261 (266)
                        ..+..+.+++++  |++.||++||+...
T Consensus       220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~  249 (461)
T TIGR01039       220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF  249 (461)
T ss_pred             HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence              234456788854  69999999998653

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.002  Score=58.96  Aligned_cols=49  Identities=31%  Similarity=0.439  Sum_probs=37.4

Q ss_pred             cccccch---HHHHHHHHHHhCCC--------C-CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          148 YEAFESR---KSILNDALDALSNP--------N-VDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       148 ~~~~~gr---~~~~~~l~~~l~~~--------~-~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..++-|-   ..++++|+++|.++        + .+=|.++|++|.|||-||+.|.....+
T Consensus       303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V  363 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV  363 (752)
T ss_pred             cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence            3344454   45678889998763        2 356889999999999999999998764

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=96.93  E-value=0.0025  Score=57.78  Aligned_cols=90  Identities=17%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCC------C
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN-------ICEG------S  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~-------~~~~------~  233 (266)
                      ..-..++|+|.+|+|||||++.+.+...    .+..+...+.. .....++....+..-+..       ..+.      .
T Consensus       153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~  228 (434)
T PRK07196        153 GKGQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK  228 (434)
T ss_pred             ecceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence            4568899999999999999999887543    23333333432 222333333333332221       1111      1


Q ss_pred             HHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          234 ESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       234 ~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      ..+....+.+++.+ |+..||++||+...
T Consensus       229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~  257 (434)
T PRK07196        229 ATELCHAIATYYRDKGHDVLLLVDSLTRY  257 (434)
T ss_pred             HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence            22334445555543 59999999998654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.93  E-value=0.0077  Score=57.76  Aligned_cols=94  Identities=27%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-c--CCCe---EEEEEeCCCC-------CHHHH----------------H
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-K--VCDE---VVFVEVSRTP-------DVKRI----------------Q  218 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~--~f~~---~~wv~v~~~~-------~~~~~----------------~  218 (266)
                      ....+++|+|++|+|||||.+.+....... +  .|..   +.|  +.|..       ++.+.                .
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y--~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~  420 (635)
T PRK11147        343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAY--FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV  420 (635)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEE--EeCcccccCCCCCHHHHHHhhcccccccchHHHH
Confidence            356799999999999999999998864321 1  1221   222  23321       11111                1


Q ss_pred             HHHHHHhcC-------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          219 GDVADQLSL-------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       219 ~~i~~~~~~-------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..++..++.       .....|..+.. -.|...|-. +.-+|+||++.+.+|.
T Consensus       421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~-~p~lLlLDEPt~~LD~  473 (635)
T PRK11147        421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK-PSNLLILDEPTNDLDV  473 (635)
T ss_pred             HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence            223333333       12234544433 335566666 7889999999998875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.93  E-value=0.0085  Score=55.61  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~   53 (490)
T PRK10938         27 NAGDSWAFVGANGSGKSALARALAGEL   53 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            356789999999999999999998754

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.93  E-value=0.00093  Score=44.53  Aligned_cols=23  Identities=39%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +|.|.|..|+||||+++.+.+..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.93  E-value=0.0013  Score=61.12  Aligned_cols=48  Identities=19%  Similarity=0.286  Sum_probs=41.3

Q ss_pred             cccccchHHHHHHHHHHh------CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDAL------SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.++.+++|++.|      .+...+++.++|+.|+||||||+.+.+-..
T Consensus        75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            346789999999999888      345678999999999999999999999765

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.92  E-value=0.011  Score=50.56  Aligned_cols=28  Identities=36%  Similarity=0.520  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++.++|++|+||||++..+.....
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3468999999999999998888876654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.92  E-value=0.0069  Score=57.39  Aligned_cols=49  Identities=22%  Similarity=0.441  Sum_probs=41.5

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++. -+-++|+.|+||||+|+.+.+...
T Consensus        22 ~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         22 TFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            4667899999999999988766654 688999999999999999988754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.92  E-value=0.0022  Score=52.86  Aligned_cols=93  Identities=20%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE----------------------EeCCCCC------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV----------------------EVSRTPD------------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------------~v~~~~~------------  213 (266)
                      ..-..++|+|+.|+|||||...+..-.+..   ...+++                      .|-|.++            
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~  105 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE  105 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence            456799999999999999999997543321   111111                      1112211            


Q ss_pred             ------------HHHHHHHHHHHhcCC-------CCCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 ------------VKRIQGDVADQLSLN-------ICEGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 ------------~~~~~~~i~~~~~~~-------~~~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                                  ..+....+++.++..       ....|..+ ..-.+.+.|-. ..-+|+.|+.....|-
T Consensus       106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~-~P~iilADEPTgnLD~  175 (226)
T COG1136         106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN-NPKIILADEPTGNLDS  175 (226)
T ss_pred             hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc-CCCeEEeeCccccCCh
Confidence                        123344566665552       22455433 34457778887 8899999999887764

>PRK09099 type III secretion system ATPase; Provisional

Probab=96.92  E-value=0.0047  Score=56.13  Aligned_cols=89  Identities=17%  Similarity=0.324  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcC-------CCCCCC-H----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSL-------NICEGS-E----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~-------~~~~~~-~----  234 (266)
                      .+-..++|+|..|+|||||++.+.....    -+..+.+.+.+ .....++.+.+...-+.       ...+.+ .    
T Consensus       161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~  236 (441)
T PRK09099        161 GEGQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK  236 (441)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence            3568999999999999999999987543    23334444443 33444555555443222       111111 1    


Q ss_pred             -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 -SERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       ......+.+++++ ||..||++||+..
T Consensus       237 a~~~a~tiAEyfrd~G~~VLl~~DslTr  264 (441)
T PRK09099        237 AAYVATAIAEYFRDRGLRVLLMMDSLTR  264 (441)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence             1223446677754 6999999999864

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.92  E-value=0.0026  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.322  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|+|+.|+||||+++.+.....
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4789999999999999998877643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=96.91  E-value=0.0054  Score=55.37  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=54.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      ..-..++|+|.+|+|||||++.+.+..+    .+..+...+.... ...++.......-..       ...+.+ ..   
T Consensus       135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~  210 (411)
T TIGR03496       135 GRGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR  210 (411)
T ss_pred             ecCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence            3567899999999999999998887543    2455556666543 344444444433211       111222 11   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++++ |++.||++||+..
T Consensus       211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr  238 (411)
T TIGR03496       211 AAFYATAIAEYFRDQGKDVLLLMDSLTR  238 (411)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence              223445666643 6999999999864

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=96.91  E-value=0.0065  Score=49.05  Aligned_cols=28  Identities=32%  Similarity=0.522  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+.+|.|++|.||||+.+.++.-..
T Consensus        26 e~Gei~GlLG~NGAGKTT~LRmiatlL~   53 (245)
T COG4555          26 EEGEITGLLGENGAGKTTLLRMIATLLI   53 (245)
T ss_pred             ccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence            4678999999999999999999998765

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.91  E-value=0.0012  Score=54.95  Aligned_cols=25  Identities=36%  Similarity=0.514  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|+|++|+||||+|+.+.....
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3488999999999999999988754

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=96.91  E-value=0.0084  Score=56.60  Aligned_cols=94  Identities=24%  Similarity=0.367  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe---EEEEEeCCCC-------CHHH----------------HH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE---VVFVEVSRTP-------DVKR----------------IQ  218 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~---~~wv~v~~~~-------~~~~----------------~~  218 (266)
                      ..-.+++|+|++|+|||||++.++.......   .|..   +.|  ++|.+       +..+                -.
T Consensus       348 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~--v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  425 (556)
T PRK11819        348 PPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAY--VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPS  425 (556)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEE--EeCchhhcCCCCCHHHHHHhhcccccccccHHHH
Confidence            3567999999999999999999987643111   1111   122  23321       1111                11


Q ss_pred             HHHHHHhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          219 GDVADQLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       219 ~~i~~~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +.++..++..       ....|..+.. -.|...|.. +.-+++||+..+.+|.
T Consensus       426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~-~p~lllLDEPt~~LD~  478 (556)
T PRK11819        426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ-GGNVLLLDEPTNDLDV  478 (556)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence            2345555542       1234544433 345666666 8889999999998774

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.91  E-value=0.009  Score=48.30  Aligned_cols=94  Identities=16%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh--ccc-c--CCCeE---------EEEEeCCCCCH---HHHHHHHHHHhcCCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA--KKL-K--VCDEV---------VFVEVSRTPDV---KRIQGDVADQLSLNIC  230 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~--~~~-~--~f~~~---------~wv~v~~~~~~---~~~~~~i~~~~~~~~~  230 (266)
                      ..-.+++|.|++|+|||||.+.+..-.  ... +  .|+..         ....+++.+..   ..+...+.-..  ...
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~--~~~  110 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA--KLR  110 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH--Hhc
Confidence            356799999999999999999998764  321 1  01100         01122333211   12222222111  011


Q ss_pred             CCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          231 EGSESE-RAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       231 ~~~~~~-~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..|..+ ..-.|...|-. +.-+++||++.+..|.
T Consensus       111 ~LS~G~~qrv~laral~~-~p~illlDEP~~~LD~  144 (194)
T cd03213         111 GLSGGERKRVSIALELVS-NPSLLFLDEPTSGLDS  144 (194)
T ss_pred             cCCHHHHHHHHHHHHHHc-CCCEEEEeCCCcCCCH
Confidence            344333 33345666666 7789999999888764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK09087 hypothetical protein; Validated

Probab=96.90  E-value=0.013  Score=48.74  Aligned_cols=26  Identities=38%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+.|+|+.|+|||+|++.+++..
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence            34679999999999999999988764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=96.90  E-value=0.0092  Score=58.01  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|..|+|||||++.+..-.
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~  529 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLY  529 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999999997654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK06762 hypothetical protein; Provisional

Probab=96.89  E-value=0.001  Score=52.32  Aligned_cols=25  Identities=36%  Similarity=0.470  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|.|+.|+||||+|+.+.+..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.89  E-value=0.0059  Score=47.92  Aligned_cols=28  Identities=36%  Similarity=0.497  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....++|.|++|+||+||.+.|++-..
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Lis   54 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLIS   54 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhccC
Confidence            3467899999999999999999988643

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.89  E-value=0.00088  Score=55.13  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+++.|.|++|.|||||.+.+.-.
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHH
Confidence            488999999999999999998743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0064  Score=48.37  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..++.|.|++|+|||||++.++.+.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4678999999999999999999975

>PRK04296 thymidine kinase; Provisional

Probab=96.89  E-value=0.0021  Score=51.92  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=45.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE---GSESERAMMLCGQLKK  247 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~L~~  247 (266)
                      .++.|.|+.|.||||++.........  +-..+..+.  ..++.......++.+++.....   ....++...+.+  ..
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~   76 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG   76 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence            46788999999999999888877642  222333331  1112222233455566543322   223444444444  33


Q ss_pred             CCeEEEEEeCC
Q 045699          248 GKKILFVLDNI  258 (266)
Q Consensus       248 ~kr~LlvlDDv  258 (266)
                      ++.-+||+|++
T Consensus        77 ~~~dvviIDEa   87 (190)
T PRK04296         77 EKIDCVLIDEA   87 (190)
T ss_pred             CCCCEEEEEcc
Confidence            14448889987

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.88  E-value=0.001  Score=53.16  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +..+|.|+|+.|+||||+++.+....
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998764

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.88  E-value=0.012  Score=52.06  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~   91 (340)
T PRK13536         65 ASGECFGLLGPNGAGKSTIARMILGMT   91 (340)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            356899999999999999999998764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.87  E-value=0.01  Score=55.72  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEeCCCC--------CHHH-------------HHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEVSRTP--------DVKR-------------IQGDVA  222 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v~~~~--------~~~~-------------~~~~i~  222 (266)
                      ..-.+++|+|++|+|||||++.+........   .|+. .-...++|.+        +..+             -..+++
T Consensus       343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l  422 (530)
T PRK15064        343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL  422 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence            3567999999999999999999987643211   1221 1011223221        1221             123344


Q ss_pred             HHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          223 DQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       223 ~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..++..       ....|..+. .-.|...|.. +.-+|+||+..+.+|.
T Consensus       423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~-~p~lllLDEPt~~LD~  471 (530)
T PRK15064        423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ-KPNVLVMDEPTNHMDM  471 (530)
T ss_pred             HHcCCChhHhcCcccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence            555431       223454333 3445666776 8889999999998875

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=96.87  E-value=0.0088  Score=54.35  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=63.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhc-CC-------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK--VCD---------EVVFVEVSRTPDVKRIQGDVADQLS-LN-------  228 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~---------~~~wv~v~~~~~~~~~~~~i~~~~~-~~-------  228 (266)
                      ..-..++|+|-.|+|||||+..+.+......  ..|         .++++.+++.....+.+...+..-+ ..       
T Consensus       139 g~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a  218 (466)
T TIGR01040       139 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN  218 (466)
T ss_pred             ccCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence            3567899999999999999999988764100  012         6788888888666676666666655 21       


Q ss_pred             -CCCCCHH-----HHHHHHHHHHh-c-CCeEEEEEeCCCCC
Q 045699          229 -ICEGSES-----ERAMMLCGQLK-K-GKKILFVLDNIWTS  261 (266)
Q Consensus       229 -~~~~~~~-----~~~~~l~~~L~-~-~kr~LlvlDDvw~~  261 (266)
                       .+.....     ..+..+.++++ + |++.||++||+...
T Consensus       219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~  259 (466)
T TIGR01040       219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY  259 (466)
T ss_pred             CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence             1111111     22345678887 3 69999999998653

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=96.87  E-value=0.0052  Score=55.67  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCCCH-----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN-------ICEGSE-----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~-------~~~~~~-----  234 (266)
                      ..-..++|+|..|+|||||++.+....+.    +..+...+.+ .....+++...+..-+..       ..+.+.     
T Consensus       154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r  229 (432)
T PRK06793        154 GIGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR  229 (432)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence            35678999999999999999999886532    2222233433 355666666655543321       112221     


Q ss_pred             -HHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          235 -SERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                       ...+..+.+++++ |+..||++||+.+.
T Consensus       230 a~~~a~~iAEyfr~~G~~VLlilDslTr~  258 (432)
T PRK06793        230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF  258 (432)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence             1223445566654 69999999998764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.86  E-value=0.012  Score=52.22  Aligned_cols=27  Identities=30%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         30 KQGTMVTLLGPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            346799999999999999999997754

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.86  E-value=0.0065  Score=54.72  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..++.++|++|+||||++..+....
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999987654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.86  E-value=0.011  Score=55.58  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=55.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----------CC------CeEEEEEeCCCCC-------------HHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-----------VC------DEVVFVEVSRTPD-------------VKRI  217 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f------~~~~wv~v~~~~~-------------~~~~  217 (266)
                      +....++|+|++|+|||||++.+........           .+      ....  .++|++.             ..+-
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~--~v~q~~~lf~~ti~~n~~~~~~~~  424 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS--AVFTDFHLFDQLLGPEGKPANPAL  424 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE--EEecChhHHHHhhccccCchHHHH
Confidence            4578999999999999999999976532110           01      1111  2333221             1122


Q ss_pred             HHHHHHHhcCCC-----------CCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          218 QGDVADQLSLNI-----------CEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       218 ~~~i~~~~~~~~-----------~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..+.+++++...           ...|..+.+. .+.+.+-. ++-+++||+..+..|.
T Consensus       425 ~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~-~~~ililDE~ts~LD~  482 (547)
T PRK10522        425 VEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE-ERDILLLDEWAADQDP  482 (547)
T ss_pred             HHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCCCH
Confidence            344555554421           1344444433 35666666 7889999999998774

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.85  E-value=0.011  Score=47.23  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD  220 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~  220 (266)
                      ++.|.|++|+|||+|+..+.....  ..=..++|++...+  ..++.+.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~--~~~~~~~   45 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES--PEELIEN   45 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC--HHHHHHH
Confidence            367899999999999998866543  12245778876543  4444433

A related protein is found in archaea.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.85  E-value=0.0084  Score=58.49  Aligned_cols=47  Identities=23%  Similarity=0.279  Sum_probs=33.6

Q ss_pred             ccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++.|.+..++.|.+.+.    .         ...+-+.++|+.|+|||+||+.+.+...
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~  512 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG  512 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence            445677776666655432    1         1234588999999999999999999764

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=96.85  E-value=0.0057  Score=50.45  Aligned_cols=47  Identities=15%  Similarity=0.144  Sum_probs=39.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|-++.++.+.-...+.+...+.|.||+|+||||-+..+.+..
T Consensus        26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            45688988888888776678889999999999999999888777764

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.85  E-value=0.0092  Score=49.07  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|+|++|+||||+|+.+.....
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999987653

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.12  Score=50.10  Aligned_cols=102  Identities=18%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             cccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHH
Q 045699          150 AFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGD  220 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~  220 (266)
                      .++|.+..++.+.+.+.       +  ..+.+...+|+.|+|||-||+.+....-  +.-+..+-+      |+.+.+..
T Consensus       492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~------DMSEy~Ek  563 (786)
T COG0542         492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRI------DMSEYMEK  563 (786)
T ss_pred             ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceee------chHHHHHH
Confidence            46777887777776652       2  2356788899999999999999988642  100222322      33333322


Q ss_pred             --HHHHhcCCCCCCCHHHHHHHHHHHHhcCCeE-EEEEeCCCCC
Q 045699          221 --VADQLSLNICEGSESERAMMLCGQLKKGKKI-LFVLDNIWTS  261 (266)
Q Consensus       221 --i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~-LlvlDDvw~~  261 (266)
                        +.+-+|.+..--.-++ -..|-+..+. |.| +|+||+|...
T Consensus       564 HsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEKA  605 (786)
T COG0542         564 HSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA  605 (786)
T ss_pred             HHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence              2222333211000011 2345566676 877 7779988653

>PRK14527 adenylate kinase; Provisional

Probab=96.84  E-value=0.0034  Score=50.66  Aligned_cols=28  Identities=25%  Similarity=0.288  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|.|+|++|+||||+|+.+.+...
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999987654

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.84  E-value=0.0024  Score=56.19  Aligned_cols=48  Identities=17%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |...++|.+..+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus         2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030         2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence            345688999999888777777778888899999999999999997654

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.0012  Score=54.07  Aligned_cols=28  Identities=43%  Similarity=0.580  Sum_probs=25.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      +..+|||-|.+|+||||+|+.+++....
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~   34 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGV   34 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            4579999999999999999999998763

>PLN03073 ABC transporter F family; Provisional

Probab=96.84  E-value=0.01  Score=57.52  Aligned_cols=94  Identities=19%  Similarity=0.270  Sum_probs=55.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC----CH----------------HHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP----DV----------------KRIQGDV  221 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~----~~----------------~~~~~~i  221 (266)
                      ..-.+++|+|++|+|||||++.+........   .++   .+.|  ++|.+    +.                .+-...+
T Consensus       533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igy--v~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  610 (718)
T PLN03073        533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  610 (718)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEE--EeccccccCCcchhHHHHHHHhcCCCCHHHHHHH
Confidence            3567999999999999999999987643211   011   1112  22211    00                1112344


Q ss_pred             HHHhcCC-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          222 ADQLSLN-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       222 ~~~~~~~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +..++..       ....|..+.. -.|...|-. +.-+|+||++.+.+|.
T Consensus       611 L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~-~p~lLLLDEPT~~LD~  660 (718)
T PLN03073        611 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-KPHILLLDEPSNHLDL  660 (718)
T ss_pred             HHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCH
Confidence            5555542       2234544443 345666666 8889999999998874

>PRK06217 hypothetical protein; Validated

Probab=96.83  E-value=0.0033  Score=50.32  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCC--CeEEEEE
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVE  207 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~  207 (266)
                      ..|.|.|++|+||||+|+.+....... +|  |...|..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~~   39 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWLP   39 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeecc
Confidence            358999999999999999999886542 33  4556643

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.82  E-value=0.011  Score=52.53  Aligned_cols=27  Identities=33%  Similarity=0.540  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||.+.+..-..
T Consensus        29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~   55 (353)
T TIGR03265        29 KGEFVCLLGPSGCGKTTLLRIIAGLER   55 (353)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence            467999999999999999999987643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.82  E-value=0.0049  Score=56.03  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+++.++|++|+||||++..+....
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699999999999999888776654

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.82  E-value=0.0074  Score=54.48  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC
Q 045699          154 RKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGS  233 (266)
Q Consensus       154 r~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~  233 (266)
                      +......+.+.+..... ++.|.|+-++|||||++.+......     ..+++..........-+.              
T Consensus        22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~-----~~iy~~~~d~~~~~~~l~--------------   81 (398)
T COG1373          22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE-----EIIYINFDDLRLDRIELL--------------   81 (398)
T ss_pred             HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc-----ceEEEEecchhcchhhHH--------------
Confidence            33444555555543333 9999999999999999777665431     145554332211111001              


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          234 ESERAMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       234 ~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                        +....+...-.. ++.+|+||+|.+..+|+
T Consensus        82 --d~~~~~~~~~~~-~~~yifLDEIq~v~~W~  110 (398)
T COG1373          82 --DLLRAYIELKER-EKSYIFLDEIQNVPDWE  110 (398)
T ss_pred             --HHHHHHHHhhcc-CCceEEEecccCchhHH
Confidence              111122222222 66899999999998885

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.81  E-value=0.014  Score=54.14  Aligned_cols=96  Identities=15%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe-EEEEEe----CCCCCHHH------------------HHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE-VVFVEV----SRTPDVKR------------------IQGDV  221 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~-~~wv~v----~~~~~~~~------------------~~~~i  221 (266)
                      ....+++|+|++|+|||||++.+........   .++. ...+..    ....+..+                  ....+
T Consensus        48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~el  127 (549)
T PRK13545         48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEI  127 (549)
T ss_pred             eCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHH
Confidence            3567999999999999999999988643211   0111 001111    11111111                  11233


Q ss_pred             HHHhcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          222 ADQLSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       222 ~~~~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ++.++.      .....|..+.. -.|...|.. ..-+|+||++.+.+|.
T Consensus       128 Le~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~-~P~LLLLDEPTsgLD~  176 (549)
T PRK13545        128 IEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI-NPDILVIDEALSVGDQ  176 (549)
T ss_pred             HHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh-CCCEEEEECCcccCCH
Confidence            444443      12344544443 346666766 7889999999988764

>PRK10536 hypothetical protein; Provisional

Probab=96.80  E-value=0.0084  Score=50.48  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEE
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVV  204 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~  204 (266)
                      ...+.++......++.++.+  ...+.+.|+.|+|||+||..+..+.-..+.|+..+
T Consensus        54 ~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi  108 (262)
T PRK10536         54 TSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII  108 (262)
T ss_pred             CccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence            44567777777888888765  35999999999999999999988632223444443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0059  Score=57.70  Aligned_cols=75  Identities=25%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQLSLNICEGSESERAMMLCGQLK  246 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~  246 (266)
                      ..+-|-|.|+.|+|||+|++.+++... +++.-++.+++++.-.  ..+.+++.+                ...+...+.
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~  492 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW  492 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence            346788999999999999999999876 3444455666666422  233333222                223345566


Q ss_pred             cCCeEEEEEeCCCCC
Q 045699          247 KGKKILFVLDNIWTS  261 (266)
Q Consensus       247 ~~kr~LlvlDDvw~~  261 (266)
                      - ..-+|||||+...
T Consensus       493 ~-~PSiIvLDdld~l  506 (952)
T KOG0735|consen  493 Y-APSIIVLDDLDCL  506 (952)
T ss_pred             h-CCcEEEEcchhhh
Confidence            5 7889999998643

>PRK12678 transcription termination factor Rho; Provisional

Probab=96.80  E-value=0.0065  Score=56.59  Aligned_cols=88  Identities=18%  Similarity=0.166  Sum_probs=53.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCHHHHHHHHHHHhcC-----CCCCCC-----HHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVV-FVEVSRTPDVKRIQGDVADQLSL-----NICEGS-----ESE  236 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~-wv~v~~~~~~~~~~~~i~~~~~~-----~~~~~~-----~~~  236 (266)
                      ..-...+|+|+.|+|||||++.|.+.... .+-++.+ .+-|.+-....   .++-..+..     ..+...     ..+
T Consensus       414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~  489 (672)
T PRK12678        414 GKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE  489 (672)
T ss_pred             ccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence            35678999999999999999999997642 2334444 44555443222   222333311     112211     223


Q ss_pred             HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          237 RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       237 ~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      +...+.++|.+ |+..||+||++.
T Consensus       490 ~ai~~Ae~fre~G~dVlillDSlT  513 (672)
T PRK12678        490 LAIERAKRLVELGKDVVVLLDSIT  513 (672)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCch
Confidence            44455666643 699999999986

>PRK03839 putative kinase; Provisional

Probab=96.79  E-value=0.0013  Score=52.52  Aligned_cols=24  Identities=33%  Similarity=0.729  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|+|+.|+||||+++.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999864

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.0093  Score=52.26  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+-..+.++|++|||||||.+.|..-.
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346789999999999999999997654

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=96.79  E-value=0.012  Score=52.68  Aligned_cols=26  Identities=27%  Similarity=0.533  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        44 ~Ge~~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         44 KGEIFALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45799999999999999999998654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.79  E-value=0.015  Score=46.33  Aligned_cols=92  Identities=22%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE----------------------------eCCC--------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE----------------------------VSRT--------  211 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~----------------------------v~~~--------  211 (266)
                      ..-.+++|+|++|.||+||...|..=..   .-...+|++                            |.++        
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~   99 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG   99 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence            3567999999999999999999965321   112344541                            1111        


Q ss_pred             CC----HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          212 PD----VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       212 ~~----~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      ..    -.+-...++.+.|..      ....|..+.+ ..|.++|-. .+-++.||+..+..|
T Consensus       100 LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR-~~PilLLDEPFsALd  161 (231)
T COG3840         100 LKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVR-EQPILLLDEPFSALD  161 (231)
T ss_pred             cccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhc-cCCeEEecCchhhcC
Confidence            01    123344566666652      1234433333 346666666 677888999888765

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.78  E-value=0.012  Score=55.65  Aligned_cols=49  Identities=18%  Similarity=0.374  Sum_probs=40.9

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++. .+.++|+.|+||||+|+.+.+...
T Consensus        14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965         14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            4667899999999999988766664 468999999999999999987753

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.78  E-value=0.006  Score=59.43  Aligned_cols=44  Identities=25%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             ccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          151 FESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.+..++.+.+.+.       ++  ...++.++|+.|+|||+||+.+....
T Consensus       456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l  508 (731)
T TIGR02639       456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL  508 (731)
T ss_pred             eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence            5676777777766553       11  23468899999999999999998865

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0073  Score=56.21  Aligned_cols=72  Identities=25%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGK  249 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~k  249 (266)
                      ..=|.+||+.|||||-||+.|.|..+..       |++|-.+    +++..-        -+.++........+.-.. -
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY--------VGESErAVR~vFqRAR~s-a  604 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY--------VGESERAVRQVFQRARAS-A  604 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH--------hhhHHHHHHHHHHHhhcC-C
Confidence            4567899999999999999999987632       3444332    222211        122222222223333334 8


Q ss_pred             eEEEEEeCCCCC
Q 045699          250 KILFVLDNIWTS  261 (266)
Q Consensus       250 r~LlvlDDvw~~  261 (266)
                      .|+|++|++...
T Consensus       605 PCVIFFDEiDaL  616 (802)
T KOG0733|consen  605 PCVIFFDEIDAL  616 (802)
T ss_pred             CeEEEecchhhc
Confidence            899999998653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.77  E-value=0.012  Score=52.37  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        30 ~Ge~~~llGpsGsGKSTLLr~iaGl~   55 (362)
T TIGR03258        30 AGELLALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998753

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK06820 type III secretion system ATPase; Validated

Probab=96.77  E-value=0.0075  Score=54.79  Aligned_cols=90  Identities=20%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~---  235 (266)
                      ..-..++|+|.+|+|||||++.+....    +-+..+...+..... ..++....+..-..       ...+.+ ..   
T Consensus       161 ~~Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~  236 (440)
T PRK06820        161 GEGQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLK  236 (440)
T ss_pred             cCCCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence            345789999999999999999888753    234555666665522 22222222211000       111111 11   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                        ..+..+.+++++ |+..||++||+...
T Consensus       237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~  265 (440)
T PRK06820        237 GLSTATTIAEYFRDRGKKVLLMADSLTRY  265 (440)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence              123456677754 69999999998653

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.77  E-value=0.007  Score=57.48  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|..|+|||||++.+..-.
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999996654

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.77  E-value=0.0024  Score=56.29  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=42.9

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|...++|.+..+..|+..+.++.+.-+.|.|..|+||||+|+.+++-..
T Consensus        14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            35677899999999998887788888788999999999999999977643

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=96.77  E-value=0.01  Score=57.73  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....++|+|+.|+|||||++.+..-..
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~  532 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQ  532 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4678999999999999999999977643

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=96.76  E-value=0.0093  Score=53.91  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC--------CCCCCCHH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL--------NICEGSES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~--------~~~~~~~~---  235 (266)
                      ..-..++|+|..|+|||||++.+.+..+    -+..+...+.+.. ...++..+.+.+-+.        ..+.....   
T Consensus       135 ~~Gqri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~  210 (413)
T TIGR03497       135 GKGQRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK  210 (413)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence            4568999999999999999998887543    2333334444433 344454444433211        11111111   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++++ |+..||++||+..
T Consensus       211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr  238 (413)
T TIGR03497       211 AAFTATAIAEYFRDQGKDVLLMMDSVTR  238 (413)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEcCcHH
Confidence              233456677754 6999999999864

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.76  E-value=0.0032  Score=61.50  Aligned_cols=47  Identities=19%  Similarity=0.320  Sum_probs=39.1

Q ss_pred             ccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+..|.+..++.|+++|.      .....++.++|+.|+||||+++.+.....
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~  374 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG  374 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            446889999999998874      23467899999999999999999998754

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.76  E-value=0.011  Score=53.98  Aligned_cols=89  Identities=13%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHH------hcC-CCCCCC-H----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQ------LSL-NICEGS-E----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~------~~~-~~~~~~-~----  234 (266)
                      .....++|+|..|+|||||++.+.+....    +.....-+.+ .-+..++..+.+..      +.. ...+.+ .    
T Consensus       156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~  231 (438)
T PRK07721        156 GKGQRVGIFAGSGVGKSTLMGMIARNTSA----DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK  231 (438)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcccCC----CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence            45789999999999999999998875432    2222223332 22344443332211      110 111111 1    


Q ss_pred             -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 -SERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 -~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       ...+..+.+++++ |++.||++||+..
T Consensus       232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr  259 (438)
T PRK07721        232 GAYTATAIAEYFRDQGLNVMLMMDSVTR  259 (438)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence             1234446677754 6999999999864

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=96.75  E-value=0.012  Score=53.48  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=54.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCCHH----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGSES----  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~~~----  235 (266)
                      ..-..++|+|.+|+|||||.+.+.+...    .+..+.+.+... ....++..+.......       .....+..    
T Consensus       143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~  218 (422)
T TIGR02546       143 GEGQRIGIFAGAGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLK  218 (422)
T ss_pred             cCCCEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHH
Confidence            4567889999999999999999998643    344555555543 3444554444432211       11111111    


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        .....+.+++.+ |++.|+++|++..
T Consensus       219 ~~~~a~~~AE~f~~~g~~Vl~~~Dsltr  246 (422)
T TIGR02546       219 AAYTATAIAEYFRDQGKRVLLMMDSLTR  246 (422)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEEEeCchH
Confidence              223345566643 5899999999874

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.75  E-value=0.0016  Score=49.94  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      ++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence            479999999999999999999997633 344444555555

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.75  E-value=0.025  Score=46.12  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      +.-.|.++.|++|||||||.+.+..
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHh
Confidence            5678999999999999999998844

>PRK10865 protein disaggregation chaperone; Provisional

Probab=96.74  E-value=0.0079  Score=59.53  Aligned_cols=45  Identities=20%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             cccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          150 AFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++|.+..++.+...+.       ++  ...++.++|+.|+|||+||+.+.+..
T Consensus       569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l  622 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM  622 (857)
T ss_pred             eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            46787777777766553       11  23578899999999999999999865

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=96.74  E-value=0.016  Score=56.16  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|..|+|||||++.+..-.
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~  503 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFE  503 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999996654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.73  E-value=0.0013  Score=52.42  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ++|.|+|+.|+|||||++.+...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHcc
Confidence            57999999999999999999885

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=96.72  E-value=0.021  Score=45.84  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             HHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          160 DALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       160 ~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.+.+...++ ..+.++|+.|+||||+|+.+.....
T Consensus         3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678         3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            34455555555 6789999999999999999988754

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.72  E-value=0.005  Score=58.27  Aligned_cols=52  Identities=29%  Similarity=0.485  Sum_probs=39.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQL  225 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~  225 (266)
                      .-++..++|++|+||||||..|..+...     .++=++.|..-+...+-..|...+
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~av  376 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAV  376 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHH
Confidence            4579999999999999999999987541     355677777776666666655544

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.72  E-value=0.0015  Score=52.05  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++.|+|+.|+|||||++.+.....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999977643

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0081  Score=55.56  Aligned_cols=96  Identities=22%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc-----------------cCCCeEEEEEeCCC----------------CCH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL-----------------KVCDEVVFVEVSRT----------------PDV  214 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-----------------~~f~~~~wv~v~~~----------------~~~  214 (266)
                      ...+.++|||.+|+|||||...+..-.+..                 ..+..+.||.=...                .+.
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~  424 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASD  424 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCH
Confidence            456899999999999999999996654311                 11234566622211                111


Q ss_pred             HHHHHHHHHHhcC----------------CCCCCCHHHHHH-HHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          215 KRIQGDVADQLSL----------------NICEGSESERAM-MLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       215 ~~~~~~i~~~~~~----------------~~~~~~~~~~~~-~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                      +++ .+.+++.+.                .-...|..+.++ .|.+.|-+ ++-++++|+.....|.|
T Consensus       425 e~i-~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~-~~~l~llDEpTA~LD~e  490 (559)
T COG4988         425 EEI-IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS-PASLLLLDEPTAHLDAE  490 (559)
T ss_pred             HHH-HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC-CCCEEEecCCccCCCHh
Confidence            222 233333322                111245444433 35666766 89999999999998865

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.71  E-value=0.0069  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.-..|+|+|.+|+|||||+|.+..-.
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            567899999999999999999996543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=96.71  E-value=0.015  Score=54.90  Aligned_cols=94  Identities=22%  Similarity=0.356  Sum_probs=55.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---eEEEEEeCCCC-------CHHH----------------HH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---EVVFVEVSRTP-------DVKR----------------IQ  218 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---~~~wv~v~~~~-------~~~~----------------~~  218 (266)
                      ....+++|+|++|+|||||++.+........   .++   .+.++  +|.+       +..+                -.
T Consensus       346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v--~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  423 (552)
T TIGR03719       346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYV--DQSRDALDPNKTVWEEISGGLDIIQLGKREVPS  423 (552)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEE--eCCccccCCCCcHHHHHHhhccccccCcchHHH
Confidence            3567999999999999999999987643111   111   12222  2221       1111                12


Q ss_pred             HHHHHHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          219 GDVADQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       219 ~~i~~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..++..++..       ....|..+. .-.+...|.. +.-+++||++.+..|.
T Consensus       424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~-~p~lllLDEPt~~LD~  476 (552)
T TIGR03719       424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS-GGNVLLLDEPTNDLDV  476 (552)
T ss_pred             HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh-CCCEEEEeCCCCCCCH
Confidence            2455555542       123454333 3345666666 8889999999998875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.70  E-value=0.0013  Score=53.55  Aligned_cols=24  Identities=17%  Similarity=0.093  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..++.|.|++|+|||||.+.+...
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHH
Confidence            379999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=96.69  E-value=0.017  Score=49.51  Aligned_cols=99  Identities=13%  Similarity=0.179  Sum_probs=55.5

Q ss_pred             hHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhhhHHHH
Q 045699            8 IPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDE   87 (266)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed~ld~~   87 (266)
                      ++.+.+..+.+..+..+...+++++-++.++++|+.||+.+      +++.... -+....+..++...||++|.++|. 
T Consensus       300 FlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nk-h~~~ed~a~~ii~kAyevEYVVDa-  371 (402)
T PF12061_consen  300 FLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNK-HDTNEDCATQIIRKAYEVEYVVDA-  371 (402)
T ss_pred             HHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchh-hhhhhhHHHHHHHHHhheeeeeeh-
Confidence            33333344444444334455555555555555555555543      2332233 334899999999999999999996 


Q ss_pred             HHhhcccccCCCCChhHHh---HHHHHHHHHHHHHH
Q 045699           88 EKEKKKCLKGLCPNLMNRY---QLSKKAAWEVKAIA  120 (266)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~i~  120 (266)
                            |.....|.++.-.   .+...|..++++|+
T Consensus       372 ------Ci~k~~P~Wcl~~WL~dIieei~~ik~~i~  401 (402)
T PF12061_consen  372 ------CISKSVPHWCLERWLLDIIEEITCIKAKIQ  401 (402)
T ss_pred             ------hhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  5544455444332   34444444555443

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.69  E-value=0.0026  Score=49.32  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKL  197 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~  197 (266)
                      ..-|.|.||+|+||||+++.+.+..+.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            4578999999999999999999887644

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.68  E-value=0.012  Score=52.40  Aligned_cols=57  Identities=28%  Similarity=0.271  Sum_probs=34.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~  227 (266)
                      ...++.++|+.|+||||++..+......+.  ..+.+++.... ....+-++...+.++.
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgv  262 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDV  262 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCC
Confidence            468999999999999999888876653222  23445554321 1223334444444444

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.68  E-value=0.0059  Score=60.46  Aligned_cols=47  Identities=26%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             ccccchHHHHHHHHHHhCC-------C--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALSN-------P--NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++|.+..++.+...+..       +  ...++.++|+.|+|||++|+.+.....
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~  620 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF  620 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3467888888877776631       1  245788999999999999999998753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.68  E-value=0.0088  Score=46.27  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++.|+|..|+||||||+.+.....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988753

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.68  E-value=0.0076  Score=49.87  Aligned_cols=87  Identities=21%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHH-HHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC--------------C--C
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVC-DQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN--------------I--C  230 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~-~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~--------------~--~  230 (266)
                      +...++.|.|.+|+|||+|+.++. +..+.  .=+.++|++...++  .++.+.+- +++.+              .  .
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~   91 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE   91 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence            356899999999999999988765 44431  13567888876553  44444432 33321              0  0


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          231 -----EGSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       231 -----~~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                           ..+..++...+.+.++..+...+|+|.+.
T Consensus        92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls  125 (226)
T PF06745_consen   92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS  125 (226)
T ss_dssp             GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred             cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence                 23566777788877775355788999754

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.67  E-value=0.01  Score=56.36  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .....++|+|.+|+|||||++.+..-.
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~  385 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVF  385 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            456889999999999999999997653

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=96.67  E-value=0.01  Score=53.82  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHHH-hcC------CCCCCCH-----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVADQ-LSL------NICEGSE-----  234 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~-~~~------~~~~~~~-----  234 (266)
                      .+-..++|+|..|+|||||++.+.....    -+..+...+.+.... .++....+.. +..      ..+....     
T Consensus       155 ~~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~  230 (434)
T PRK08472        155 GKGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYG  230 (434)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHH
Confidence            4567999999999999999999987543    345555656555433 2332222211 100      0111111     


Q ss_pred             HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 SERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 ~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      ......+.+++++ |++.||++||+..
T Consensus       231 ~~~a~~iAEyFrd~G~~Vll~~DslTr  257 (434)
T PRK08472        231 AFCAMSVAEYFKNQGLDVLFIMDSVTR  257 (434)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecccchH
Confidence            1123446666644 6999999999865

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.67  E-value=0.028  Score=46.60  Aligned_cols=88  Identities=22%  Similarity=0.243  Sum_probs=52.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------------------  229 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------------------  229 (266)
                      +....+.|.|.+|+|||||+..+....-  ..-...+|++...+  ...+... +.+++...                  
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~   92 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE   92 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence            3568999999999999999998755432  12356788876543  3444333 33332210                  


Q ss_pred             -------CCCCHHHHHHHHHHHHhc-C-CeEEEEEeCCCC
Q 045699          230 -------CEGSESERAMMLCGQLKK-G-KKILFVLDNIWT  260 (266)
Q Consensus       230 -------~~~~~~~~~~~l~~~L~~-~-kr~LlvlDDvw~  260 (266)
                             ...+.+++...+.+.++. + +.-++|+|.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~  132 (229)
T TIGR03881        93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA  132 (229)
T ss_pred             cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence                   113455566666665543 1 334788887643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.66  E-value=0.0088  Score=48.59  Aligned_cols=25  Identities=40%  Similarity=0.551  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+++|+|.+|+|||||.+.+...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          25 KGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999999886

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.66  E-value=0.0015  Score=52.43  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++.|+|+.|+|||||++.+....
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999997764

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.65  E-value=0.017  Score=51.66  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||.+.+..-..
T Consensus        39 ~Ge~~~LlGpsGsGKSTLLr~IaGl~~   65 (375)
T PRK09452         39 NGEFLTLLGPSGCGKTTVLRLIAGFET   65 (375)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            467999999999999999999987543

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.65  E-value=0.0019  Score=52.54  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|+|+|+.|+|||||++.+....
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45789999999999999999998864

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.65  E-value=0.0057  Score=49.20  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|+.|+|||||++.+....
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999998753

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.64  E-value=0.038  Score=47.46  Aligned_cols=35  Identities=26%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             HHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          161 ALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       161 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++...+..++.|+|..|+|||||+..+.+...
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~  129 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK  129 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34444567899999999999999999999999864

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.64  E-value=0.0022  Score=50.48  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....|.++|+.|+||||+|+.+.....
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999998764

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.64  E-value=0.0095  Score=53.43  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|+.|+||||.+..+.....
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999998888876644

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.64  E-value=0.0016  Score=52.38  Aligned_cols=23  Identities=43%  Similarity=0.673  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +|+|.|.+|+||||||+.+....
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999875

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=96.63  E-value=0.0066  Score=55.65  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-+..+|+|.+|+||||+.+.+|...
T Consensus       100 ~g~rygLiG~nG~Gkst~L~~i~~~e  125 (614)
T KOG0927|consen  100 RGRRYGLIGPNGSGKSTFLRAIAGRE  125 (614)
T ss_pred             CCceEEEEcCCCCcHhHHHHHHhcCC
Confidence            46789999999999999999999874

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=96.63  E-value=0.013  Score=53.52  Aligned_cols=89  Identities=18%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------C-CCCCCHH---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------N-ICEGSES---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~-~~~~~~~---  235 (266)
                      .+...++|+|.+|+|||||++.+.+...    -+..+...+.... ...++..+.+..-+.       . .+.....   
T Consensus       161 ~~Gq~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~  236 (440)
T TIGR01026       161 GKGQRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLK  236 (440)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence            3467899999999999999999987643    2333444554433 334444444332111       1 1111111   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                        ..+..+.+++.+ |+..||++||+..
T Consensus       237 ~~~~a~t~AE~frd~G~~Vll~~DslTr  264 (440)
T TIGR01026       237 GAYVATAIAEYFRDQGKDVLLLMDSVTR  264 (440)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence              223345566643 6999999999864

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.63  E-value=0.011  Score=46.27  Aligned_cols=46  Identities=26%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~  227 (266)
                      .+++.|+|.+|+||||+.+.+-... +   |...        -+.-.++-+++...|.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l-~---~~~i--------vNyG~~Mle~A~k~gl   49 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL-V---KHKI--------VNYGDLMLEIAKKKGL   49 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH-h---hcee--------eeHhHHHHHHHHHhCC
Confidence            5899999999999999999887765 1   1111        1445666677766665

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.63  E-value=0.0022  Score=50.84  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|..|+|||||++.+.....
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            467999999999999999999998765

>PRK04040 adenylate kinase; Provisional

Probab=96.62  E-value=0.0021  Score=51.84  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|+|+.|+||||+++.+.....
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            36899999999999999999988763

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.62  E-value=0.024  Score=49.61  Aligned_cols=27  Identities=37%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++++|++|+||||++..+.....
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            468999999999999999999977654

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=96.61  E-value=0.023  Score=52.01  Aligned_cols=92  Identities=17%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCC--CeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH--
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES--  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f--~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~--  235 (266)
                      .-..++|+|..|+|||||+..+.+.....+.+  ..++++.+++.. ...++..++...-..       ...+.+ ..  
T Consensus       140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~  219 (458)
T TIGR01041       140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI  219 (458)
T ss_pred             cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence            56789999999999999999998876432111  167778887654 344566555543222       111121 11  


Q ss_pred             ---HHHHHHHHHHh-c-CCeEEEEEeCCCC
Q 045699          236 ---ERAMMLCGQLK-K-GKKILFVLDNIWT  260 (266)
Q Consensus       236 ---~~~~~l~~~L~-~-~kr~LlvlDDvw~  260 (266)
                         .....+.++++ + |++.||++||+..
T Consensus       220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR  249 (458)
T TIGR01041       220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN  249 (458)
T ss_pred             HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence               22445788887 3 7999999999864

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=96.61  E-value=0.03  Score=49.26  Aligned_cols=88  Identities=13%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHHH----hcC----------CCCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVADQ----LSL----------NICEG  232 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~~----~~~----------~~~~~  232 (266)
                      .+-..++|.|..|+|||+|++.+.+..    +-+.++++.+.+.. ...+++.++-+.    .+.          +..++
T Consensus       155 ~kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~  230 (369)
T cd01134         155 VKGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNM  230 (369)
T ss_pred             cCCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCC
Confidence            356799999999999999999998864    34678888887654 344555554221    111          11222


Q ss_pred             CHH------HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          233 SES------ERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       233 ~~~------~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      +..      ...-.+.+++++ |+..|+++|++.
T Consensus       231 p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t  264 (369)
T cd01134         231 PVAAREASIYTGITIAEYFRDMGYNVALMADSTS  264 (369)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence            211      123345677754 699999999975

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.60  E-value=0.0063  Score=51.23  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.++|++|+||||+|+.+.....
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999988764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.60  E-value=0.016  Score=54.79  Aligned_cols=49  Identities=18%  Similarity=0.292  Sum_probs=40.0

Q ss_pred             CcccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..+..|.+.+...+ ...+.++|+.|+||||+|+.+.+..-
T Consensus        14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            35678898888888888887655 46777899999999999999988764

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=96.60  E-value=0.014  Score=56.69  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      ...++-|+|..|+|||||+..+.....  ..-..++|+.....+++.     .+++++.+.+      ..+.++....+.
T Consensus        59 ~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~  131 (790)
T PRK09519         59 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD  131 (790)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence            468888999999999999977655433  223567899888887743     6777777432      223455556666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ..++.++--|||+|-|-..
T Consensus       132 ~lv~~~~~~LVVIDSI~aL  150 (790)
T PRK09519        132 MLIRSGALDIVVIDSVAAL  150 (790)
T ss_pred             HHhhcCCCeEEEEcchhhh
Confidence            6666546668999987643

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.60  E-value=0.016  Score=55.13  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-..++|+|..|+|||||++.+..-..
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~  392 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYP  392 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678999999999999999999976543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.59  E-value=0.018  Score=55.46  Aligned_cols=49  Identities=18%  Similarity=0.368  Sum_probs=40.3

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+++...++. .+.++|+.|+||||+|+.+....-
T Consensus        16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln   65 (725)
T PRK07133         16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN   65 (725)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3667899999999999988766654 457899999999999999987653

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.59  E-value=0.0064  Score=54.23  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             HHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          157 ILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       157 ~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..+.+++.+.......+.|.|+||.|||+|.+.+.+..+.
T Consensus         9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen    9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            3455566665566788999999999999999999998753

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.59  E-value=0.0021  Score=52.93  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            356799999999999999999997764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=96.59  E-value=0.025  Score=52.10  Aligned_cols=89  Identities=13%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699          169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE-  236 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~-  236 (266)
                      .-..++|+|..|+|||||| ..+.++.    .-+ .++++.+++... ..++...+...-...       ..+.+ ... 
T Consensus       161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~  236 (497)
T TIGR03324       161 RGQRELILGDRQTGKTAIAIDTILNQK----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY  236 (497)
T ss_pred             cCCEEEeecCCCCCHHHHHHHHHHHhc----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence            5678999999999999996 5777763    234 478899987653 445555555432221       11112 111 


Q ss_pred             ----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          237 ----RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       237 ----~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                          ....+.+++++ |+..|||+||+...
T Consensus       237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~  266 (497)
T TIGR03324       237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQH  266 (497)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence                13345667744 69999999998653

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.59  E-value=0.014  Score=46.66  Aligned_cols=29  Identities=31%  Similarity=0.568  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      +....+-++|++|+|||||.+.+|...+.
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~p   54 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEERP   54 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence            35678999999999999999999998654

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.58  E-value=0.0076  Score=53.81  Aligned_cols=83  Identities=28%  Similarity=0.323  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      .-.++.|.|.+|+|||||+..+......  .-..++|++....  ..++. .-+.+++...+      ..+.++    +.
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~----I~  151 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLED----IL  151 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHH----HH
Confidence            4579999999999999999999876542  2246777766543  33332 22445554322      122233    33


Q ss_pred             HHHhcCCeEEEEEeCCCC
Q 045699          243 GQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~  260 (266)
                      +.+...+.-+||+|.+-.
T Consensus       152 ~~i~~~~~~lVVIDSIq~  169 (372)
T cd01121         152 ASIEELKPDLVIIDSIQT  169 (372)
T ss_pred             HHHHhcCCcEEEEcchHH
Confidence            333333666899999754

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.58  E-value=0.016  Score=55.00  Aligned_cols=28  Identities=29%  Similarity=0.491  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....++|+|..|+|||||++.+..-..
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~  394 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYD  394 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4567899999999999999999977643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.58  E-value=0.0024  Score=50.66  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.|+|++|+||||+|+.+.....
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999998764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.58  E-value=0.0021  Score=52.58  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=96.58  E-value=0.023  Score=55.20  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|..|+|||||++.+..-.
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~  524 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFF  524 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            456899999999999999999996653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=96.57  E-value=0.018  Score=52.74  Aligned_cols=90  Identities=13%  Similarity=0.226  Sum_probs=55.5

Q ss_pred             CCCcEEEEEcCCCCcHHHH-HHHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCC-HHH
Q 045699          168 PNVDVIGLCGVGGIGKTTL-AKIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL-------NICEGS-ESE  236 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtL-a~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~~~~-~~~  236 (266)
                      ..-..++|+|..|+||||| ...+.+..    .-+ .++++.+++..+ ..++...+...-..       ...+.+ ...
T Consensus       139 grGQR~~I~g~~g~GKt~Lal~~I~~q~----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r  214 (485)
T CHL00059        139 GRGQRELIIGDRQTGKTAVATDTILNQK----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ  214 (485)
T ss_pred             ccCCEEEeecCCCCCHHHHHHHHHHhcc----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence            3567899999999999999 45666653    224 458888886643 44555555443221       111111 111


Q ss_pred             -----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          237 -----RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       237 -----~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                           ....+.+++++ |++.|||+||+...
T Consensus       215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr~  245 (485)
T CHL00059        215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSKQ  245 (485)
T ss_pred             HHHHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence                 12335666654 69999999998653

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.55  E-value=0.027  Score=53.74  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|.+..+..|..++...++ .-+.++|+.|+||||+|+.+.....
T Consensus        15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~   63 (620)
T PRK14948         15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN   63 (620)
T ss_pred             HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence            56788999999999888876544 5678999999999999999988864

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.55  E-value=0.015  Score=50.56  Aligned_cols=110  Identities=21%  Similarity=0.266  Sum_probs=70.9

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHH-HHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKR-IQGDVA  222 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~-~~~~i~  222 (266)
                      ...++|..++..++-.|+.    ......+.|+|+.|.|||+|...+..+.+  ..-+...-|......-.++ .++.|.
T Consensus        23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~  100 (408)
T KOG2228|consen   23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGIT  100 (408)
T ss_pred             CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHH
Confidence            3456777777777777764    34567888999999999999998888732  2224555566655543332 456676


Q ss_pred             HHhcCCC-----CCCCHHHHHHHHHHHHhcC-----CeEEEEEeCCC
Q 045699          223 DQLSLNI-----CEGSESERAMMLCGQLKKG-----KKILFVLDNIW  259 (266)
Q Consensus       223 ~~~~~~~-----~~~~~~~~~~~l~~~L~~~-----kr~LlvlDDvw  259 (266)
                      .|+....     ..++..+-...|...|..|     -+.+.|+|++.
T Consensus       101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD  147 (408)
T KOG2228|consen  101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD  147 (408)
T ss_pred             HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence            6665422     2345556666777777652     35677787764

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.55  E-value=0.002  Score=51.57  Aligned_cols=24  Identities=46%  Similarity=0.764  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|+|.|..|+||||||+.+.....
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=96.54  E-value=0.0093  Score=54.21  Aligned_cols=90  Identities=17%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC-------CCCCCCH-H---
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL-------NICEGSE-S---  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~-------~~~~~~~-~---  235 (266)
                      ..-..++|+|.+|+|||||++.+.+..+    -+.++...+... -...++.++++..-..       ...+.+. .   
T Consensus       173 ~~Gqri~I~G~sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~  248 (455)
T PRK07960        173 GRGQRMGLFAGSGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQ  248 (455)
T ss_pred             cCCcEEEEECCCCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHH
Confidence            3567899999999999999999987543    233333333322 2334444443322111       1112221 1   


Q ss_pred             --HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          236 --ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       236 --~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                        ..+..+.+++++ |+..|+++||+...
T Consensus       249 ~~~~a~tiAEyfrd~G~~Vll~~DslTr~  277 (455)
T PRK07960        249 GAAYATRIAEDFRDRGQHVLLIMDSLTRY  277 (455)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEecchhHH
Confidence              223345666654 69999999998653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.54  E-value=0.0024  Score=51.44  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=96.54  E-value=0.022  Score=54.93  Aligned_cols=27  Identities=30%  Similarity=0.585  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|++|+|||||++.+..-.
T Consensus       476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~  502 (659)
T TIGR00954       476 PSGNHLLICGPNGCGKSSLFRILGELW  502 (659)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.54  E-value=0.0057  Score=46.30  Aligned_cols=28  Identities=32%  Similarity=0.165  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...+|.+.|.-|+|||||++.+......
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4569999999999999999999998654

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.54  E-value=0.0022  Score=48.94  Aligned_cols=24  Identities=33%  Similarity=0.602  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|.|+|+.|+||||+|+.+.....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.53  E-value=0.0023  Score=52.55  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.52  E-value=0.0027  Score=51.47  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|+|-||-|+||||||+.+.+..+
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhC
Confidence            57899999999999999999999875

>PRK05642 DNA replication initiation factor; Validated

Probab=96.52  E-value=0.0099  Score=49.64  Aligned_cols=38  Identities=21%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS  209 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~  209 (266)
                      ...+.|+|..|+|||.|++.+.+....+  -..++|++..
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~   82 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA   82 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH
Confidence            3678999999999999999998875422  2345666654

>PRK00625 shikimate kinase; Provisional

Probab=96.52  E-value=0.0024  Score=50.73  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.++||.|+||||+++.+.+...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988754

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.52  E-value=0.0023  Score=46.50  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~  191 (266)
                      .-..++|+|+.|+|||||++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            35789999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=96.52  E-value=0.011  Score=54.20  Aligned_cols=93  Identities=20%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHH-----Hhc--C-------CCCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVAD-----QLS--L-------NICEG  232 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~-----~~~--~-------~~~~~  232 (266)
                      ..-..++|+|..|+|||||+..+...... .+-+.++++-+++... ..++...++.     .-+  .       ...+.
T Consensus       159 gkGQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~  237 (494)
T CHL00060        159 RRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE  237 (494)
T ss_pred             ccCCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence            35678999999999999999988776321 2237888998887643 4566666665     211  0       11111


Q ss_pred             C-H-----HHHHHHHHHHHhc-CC-eEEEEEeCCCCC
Q 045699          233 S-E-----SERAMMLCGQLKK-GK-KILFVLDNIWTS  261 (266)
Q Consensus       233 ~-~-----~~~~~~l~~~L~~-~k-r~LlvlDDvw~~  261 (266)
                      + .     ...+..+.+++++ ++ +.||++||+...
T Consensus       238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~  274 (494)
T CHL00060        238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF  274 (494)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence            2 1     1234457888865 34 999999998653

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.52  E-value=0.0028  Score=51.50  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++..+|.|+|++|+||||||+.+....
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998865

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.52  E-value=0.0089  Score=47.99  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|.|.|+.|+||||+++.+.+...
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998864

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=96.51  E-value=0.0042  Score=49.72  Aligned_cols=36  Identities=33%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE  207 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  207 (266)
                      .+++.|+|+.|+|||||++.+.....  ..|...+..+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T   37 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT   37 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence            57899999999999999999999765  4564444443

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=96.51  E-value=0.0071  Score=57.59  Aligned_cols=76  Identities=12%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~  227 (266)
                      ...+.|.+..++.|...+...  ..+.++|+.|+||||+|+.+.+... ..+|+...|..-+ ..+...+++.++.++|.
T Consensus        30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~  105 (637)
T PRK13765         30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNP-EDPNNPKIRTVPAGKGK  105 (637)
T ss_pred             HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence            456788888888877766543  4789999999999999999998753 2346777886653 44677888888877765

>PF14516 AAA_35: AAA-like domain

Probab=96.51  E-value=0.079  Score=46.65  Aligned_cols=111  Identities=16%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-----CCHHHHHHHHH--
Q 045699          150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-----PDVKRIQGDVA--  222 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~--  222 (266)
                      -.+.|...-+.+.+.+.. ....+.|.|+-.+|||+|...+.+..+.. .+ .++++.+..-     .+...+++.++  
T Consensus        12 ~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~   88 (331)
T PF14516_consen   12 FYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEE   88 (331)
T ss_pred             cccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence            356777555556655543 36799999999999999999999887643 23 4456766542     24555555544  


Q ss_pred             --HHhcCCCC--------CCCHHHHHHHHHHHH-hc-CCeEEEEEeCCCCCCC
Q 045699          223 --DQLSLNIC--------EGSESERAMMLCGQL-KK-GKKILFVLDNIWTSLD  263 (266)
Q Consensus       223 --~~~~~~~~--------~~~~~~~~~~l~~~L-~~-~kr~LlvlDDvw~~~~  263 (266)
                        ++++....        ..+.......+.+++ .. .++.+|+||+|.....
T Consensus        89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~  141 (331)
T PF14516_consen   89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE  141 (331)
T ss_pred             HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc
Confidence              44444210        112223333444443 21 3899999999987654

>PRK14532 adenylate kinase; Provisional

Probab=96.50  E-value=0.02  Score=45.89  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |.|+|+.|+||||+|+.+....
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7789999999999999998754

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.50  E-value=0.0024  Score=50.91  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56799999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13949 shikimate kinase; Provisional

Probab=96.49  E-value=0.0027  Score=50.25  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|+|+.|+||||+++.+.....
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999988754

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=96.49  E-value=0.013  Score=55.88  Aligned_cols=76  Identities=13%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~  227 (266)
                      ...+.|.+..++.+...+...  ..+.++|+.|+||||+++.+.+..... .|...+++.-+ ..+...+++.++.+++.
T Consensus        17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~   92 (608)
T TIGR00764        17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR   92 (608)
T ss_pred             HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence            456788888887777666543  356699999999999999999876532 34444433333 23556678888887766

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PLN03130 ABC transporter C family member; Provisional

Probab=96.49  E-value=0.023  Score=60.06  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=25.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      +....++|+|+.|+|||||++.+......
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~  669 (1622)
T PLN03130        641 PVGSLVAIVGSTGEGKTSLISAMLGELPP  669 (1622)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhcc
Confidence            46789999999999999999999887653

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.49  E-value=0.017  Score=45.74  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=47.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC-Ce
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG-KK  250 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~-kr  250 (266)
                      ++.|.|..|+|||++|..+...     .....+|+.-.+.++.+ +...|..........-...+....|.+.+.+. +.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~   74 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPG   74 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence            3678999999999999998654     23467788777777654 44444332211111111122233455555431 23


Q ss_pred             EEEEEeCCC
Q 045699          251 ILFVLDNIW  259 (266)
Q Consensus       251 ~LlvlDDvw  259 (266)
                      -.|++|.+.
T Consensus        75 ~~VLIDclt   83 (169)
T cd00544          75 DVVLIDCLT   83 (169)
T ss_pred             CEEEEEcHh
Confidence            378899764

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=96.48  E-value=0.02  Score=52.81  Aligned_cols=90  Identities=18%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC--------CCCCCHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN--------ICEGSESE  236 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~  236 (266)
                      .+-..++|+|..|+|||||| ..+.+..    .-+. ++++.+++..+ ..++...+...-...        .+......
T Consensus       160 grGQR~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r  235 (502)
T PRK13343        160 GRGQRELIIGDRQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQ  235 (502)
T ss_pred             ccCCEEEeeCCCCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHH
Confidence            35678999999999999995 6677642    2354 48888887653 345555554432211        11111111


Q ss_pred             -----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          237 -----RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       237 -----~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                           ....+.+++++ |++.|||+||+...
T Consensus       236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~  266 (502)
T PRK13343        236 YLAPFAGCAIAEYFRDQGQDALIVYDDLSKH  266 (502)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecchHHH
Confidence                 12345666654 69999999998653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.47  E-value=0.0027  Score=52.94  Aligned_cols=27  Identities=22%  Similarity=0.487  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.47  E-value=0.018  Score=53.41  Aligned_cols=87  Identities=11%  Similarity=0.144  Sum_probs=56.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------------CC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------------CE  231 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------------~~  231 (266)
                      ..-.++.|.|++|+|||||+.++......  .-+.++|++...  ++.++.+.. ++++.+.                ..
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~  335 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES  335 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence            35689999999999999999998776542  235667766554  345555553 4554421                11


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          232 GSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       232 ~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                      .+.++....+.+.+.+.+.-+||+|-+.
T Consensus       336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~  363 (484)
T TIGR02655       336 AGLEDHLQIIKSEIADFKPARIAIDSLS  363 (484)
T ss_pred             CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence            2345667777777765355578899765

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=96.46  E-value=0.022  Score=55.30  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.-..++|+|..|+|||||++.+..-.
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~  515 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLY  515 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456899999999999999999997653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.45  E-value=0.02  Score=48.82  Aligned_cols=29  Identities=24%  Similarity=0.089  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+...++|+|+.|+|||||.+.+.....
T Consensus       108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       108 NNRVLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             CCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            34467899999999999999999998764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.45  E-value=0.0019  Score=60.47  Aligned_cols=48  Identities=25%  Similarity=0.435  Sum_probs=39.7

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|.+..++.+...+.......+-|+|+.|+|||++|+.+++..
T Consensus        63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~  110 (531)
T TIGR02902        63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA  110 (531)
T ss_pred             CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            355788988888888877766666778899999999999999998754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.45  E-value=0.012  Score=53.06  Aligned_cols=46  Identities=24%  Similarity=0.255  Sum_probs=34.6

Q ss_pred             cccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.++.++.+.-.+..              ...+.|.++|+.|+|||++|+.+.....
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~   72 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN   72 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            467877777766543321              1246899999999999999999998865

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.45  E-value=0.0025  Score=52.25  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346799999999999999999997753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.45  E-value=0.033  Score=53.14  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcE-EEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDV-IGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|.+..++.|.+++...++.. +.++|+.|+||||+|+.+....
T Consensus        15 ~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l   63 (614)
T PRK14971         15 TFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI   63 (614)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence            46678999999999999987766655 7899999999999999887765

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.44  E-value=0.0079  Score=51.33  Aligned_cols=25  Identities=40%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|+|.+|+||||+|+.+.....
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~   26 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLE   26 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence            4688999999999999999998765

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.44  E-value=0.019  Score=48.26  Aligned_cols=49  Identities=24%  Similarity=0.339  Sum_probs=37.9

Q ss_pred             cccccchHHHHH---HHHHHhCCC------CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          148 YEAFESRKSILN---DALDALSNP------NVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       148 ~~~~~gr~~~~~---~l~~~l~~~------~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      .++++|.+..+.   -|++.|.++      ..+-|..+|+.|.|||-+|+.+.|..++
T Consensus       120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv  177 (368)
T COG1223         120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV  177 (368)
T ss_pred             HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC
Confidence            455778876653   356667653      4688999999999999999999998763

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.44  E-value=0.0029  Score=52.04  Aligned_cols=26  Identities=35%  Similarity=0.634  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45799999999999999999998764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.44  E-value=0.0025  Score=48.59  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|+|+.|+|||||++.+....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999998863

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.44  E-value=0.0033  Score=49.89  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...|.|+|+.|+||||+++.+.+...
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            45799999999999999999998753

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.44  E-value=0.0029  Score=50.42  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|+|++|+|||||++.+.....
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35899999999999999999998764

>TIGR01351 adk adenylate kinases

Probab=96.44  E-value=0.022  Score=46.64  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |.|+|++|+||||+|+.+.....
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            67999999999999999987543

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.43  E-value=0.01  Score=53.79  Aligned_cols=47  Identities=21%  Similarity=0.119  Sum_probs=34.4

Q ss_pred             ccccchHHHHHHHHHHhC-------CC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALS-------NP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++|.+..++.+...+.       ..         ....+.++|+.|+|||+||+.+.....
T Consensus        71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~  133 (412)
T PRK05342         71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD  133 (412)
T ss_pred             hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence            347888888877644331       10         235789999999999999999987653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.43  E-value=0.003  Score=51.77  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.43  E-value=0.0034  Score=49.85  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++|.+.|+.|+||||+|+.+....
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3589999999999999999998874

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.43  E-value=0.0027  Score=48.98  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++.+.|+.|+||||+|+.+....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            46789999999999999998864

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.43  E-value=0.003  Score=52.35  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|++|+|||||++.+..-.
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            356899999999999999999998764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.43  E-value=0.003  Score=51.53  Aligned_cols=26  Identities=46%  Similarity=0.638  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=96.42  E-value=0.021  Score=52.88  Aligned_cols=89  Identities=15%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCCcHHHH-HHHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699          169 NVDVIGLCGVGGIGKTTL-AKIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE-  236 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtL-a~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~-  236 (266)
                      +-..++|+|..|+|||+| +..+.+..    .-+. ++++.+++..+ ..++...+...-...       ..+.+ ... 
T Consensus       161 rGQr~~Ifg~~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~  236 (502)
T PRK09281        161 RGQRELIIGDRQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQY  236 (502)
T ss_pred             cCcEEEeecCCCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHH
Confidence            567899999999999999 56666643    2344 48888887654 344555554432221       11111 111 


Q ss_pred             ----HHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          237 ----RAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       237 ----~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                          .+..+.+++++ |+..|||+||+...
T Consensus       237 ~a~~~a~tiAEyfrd~G~~VLli~DdlTr~  266 (502)
T PRK09281        237 LAPYAGCAMGEYFMDNGKDALIVYDDLSKQ  266 (502)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEecCchHH
Confidence                13345666655 59999999998754

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.42  E-value=0.015  Score=54.89  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+.|+|..|+|||.|++.+.+...
T Consensus       314 ~NpL~LyG~sGsGKTHLL~AIa~~a~  339 (617)
T PRK14086        314 YNPLFIYGESGLGKTHLLHAIGHYAR  339 (617)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            34589999999999999999999865

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.42  E-value=0.0025  Score=49.94  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |.|+|+.|+||||+|+.+....
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999998875

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.42  E-value=0.0029  Score=51.98  Aligned_cols=26  Identities=31%  Similarity=0.607  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .. .+++|+|++|+|||||++.+..-.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            46 999999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.42  E-value=0.003  Score=52.87  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            346799999999999999999997653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.41  E-value=0.0021  Score=54.90  Aligned_cols=35  Identities=31%  Similarity=0.319  Sum_probs=25.8

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++.+.. .-+-+.++|+.|+|||++++......
T Consensus        23 ~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l   57 (272)
T PF12775_consen   23 SYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSL   57 (272)
T ss_dssp             HHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred             HHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccC
Confidence            344444433 35677999999999999999988754

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.41  E-value=0.026  Score=47.90  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT  211 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~  211 (266)
                      ...++.|.|.+|+|||+|+.++.....  ..-..++|++...+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee~   75 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVESP   75 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence            468999999999999999998755432  12357788887643

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=96.41  E-value=0.042  Score=51.29  Aligned_cols=49  Identities=22%  Similarity=0.323  Sum_probs=40.5

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          146 EGYEAFESRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|.+..++.|...+...++. ...++|+.|+||||+|+.+....
T Consensus        11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L   60 (535)
T PRK08451         11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL   60 (535)
T ss_pred             CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence            34667899998889999888766665 55899999999999999888775

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.41  E-value=0.0076  Score=46.19  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT  211 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~  211 (266)
                      ..-|.|.|.+|+|||||+..+......       -|+++|.-
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~   41 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL   41 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence            456889999999999999999876442       26666643

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.41  E-value=0.0029  Score=46.04  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |-|+|++|+|||+||+.+..+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            45899999999999999877754

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.40  E-value=0.02  Score=50.43  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.+.|+.|+||||+++.+.+...
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~   24 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLR   24 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999998765

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.40  E-value=0.013  Score=56.96  Aligned_cols=44  Identities=16%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             ccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          151 FESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.+..++.|.+.+.       +  .....+.++|+.|+|||+||+.+....
T Consensus       460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l  512 (758)
T PRK11034        460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_pred             EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence            5677777777776653       1  124578899999999999999998766

>PRK13695 putative NTPase; Provisional

Probab=96.40  E-value=0.005  Score=48.86  Aligned_cols=24  Identities=42%  Similarity=0.632  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.|.+|+|||||++.+++...
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999988764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.40  E-value=0.0032  Score=51.87  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            346799999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=96.40  E-value=0.031  Score=51.22  Aligned_cols=92  Identities=22%  Similarity=0.259  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc--CCCeEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-H---
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK--VCDEVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-E---  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--~f~~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~---  234 (266)
                      .-..++|+|..|+|||||+..+.+.....+  .--.++++.+++.. ...+++.++...-..       ...+.+ .   
T Consensus       142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~  221 (460)
T PRK04196        142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERI  221 (460)
T ss_pred             CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHH
Confidence            567899999999999999999988754321  11167788887654 345566666553222       111122 1   


Q ss_pred             --HHHHHHHHHHHh--cCCeEEEEEeCCCC
Q 045699          235 --SERAMMLCGQLK--KGKKILFVLDNIWT  260 (266)
Q Consensus       235 --~~~~~~l~~~L~--~~kr~LlvlDDvw~  260 (266)
                        ......+.++++  .|++.||++||+..
T Consensus       222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR  251 (460)
T PRK04196        222 LTPRMALTAAEYLAFEKGMHVLVILTDMTN  251 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEcChHH
Confidence              122445788887  37999999999864

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.40  E-value=0.0034  Score=52.04  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            356899999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.39  E-value=0.011  Score=48.57  Aligned_cols=63  Identities=21%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-----cccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-----KLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-----~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      +.+...+....  +..|.|++|.||||++..+....-     ....-...+-++...+.....++..+.+
T Consensus         8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen    8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence            44444444322  788999999999976666655541     1134456666666666677777777766

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.39  E-value=0.0034  Score=46.11  Aligned_cols=23  Identities=35%  Similarity=0.598  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |.|+|..|+|||||.+.+.+...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            78999999999999999987654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.39  E-value=0.051  Score=43.70  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..|.|.|..|+||||+++.+.+....
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999988653

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.39  E-value=0.016  Score=49.24  Aligned_cols=57  Identities=26%  Similarity=0.290  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHH
Q 045699          155 KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQ  218 (266)
Q Consensus       155 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~  218 (266)
                      ...++.+..++..  -..+.+.|+.|+|||+||+.+.....     .....+++....+..+++
T Consensus         8 ~~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll   64 (262)
T TIGR02640         8 KRVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV   64 (262)
T ss_pred             HHHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence            3445556666543  34667899999999999999987432     234455555555555443

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.39  E-value=0.0033  Score=50.82  Aligned_cols=26  Identities=19%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|.+|+|||||++.+....
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999998864

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.39  E-value=0.0033  Score=48.50  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |.|+|+.|+||||+|+.+.....
T Consensus         2 i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999988754

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.39  E-value=0.0033  Score=51.80  Aligned_cols=26  Identities=35%  Similarity=0.524  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999998763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.01  Score=57.17  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=62.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      .++++||+.+++.+++.|....-.--.++|.+|+|||.++.-+....-..+-    =+.+++.     .++-.+.     
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~g~Lv-----  238 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDLGSLV-----  238 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecHHHHh-----
Confidence            5678999999999999997544444456899999999977666655321110    1122211     1111111     


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699          224 QLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~  262 (266)
                       -|..+ -...+++...+.+.++..++.+|++|++.+-.
T Consensus       239 -AGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiV  275 (786)
T COG0542         239 -AGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIV  275 (786)
T ss_pred             -ccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence             01111 23455666666666665368999999987643

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.38  E-value=0.0059  Score=47.62  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +++|+|+.|+|||||+..+....+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.031  Score=53.48  Aligned_cols=94  Identities=19%  Similarity=0.231  Sum_probs=59.6

Q ss_pred             cccccchHHHHHHHHHHhC---------CC---CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699          148 YEAFESRKSILNDALDALS---------NP---NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK  215 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  215 (266)
                      ..++.|.++.+..|.+-+.         ..   +..=|.++|++|.|||-||++|.-.-..       .|++|-.+    
T Consensus       671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP----  739 (953)
T KOG0736|consen  671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP----  739 (953)
T ss_pred             hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence            4567889998888887653         12   2345778999999999999999886432       24555433    


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699          216 RIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      ++++--        -+.+++.+.....+.-.. +.|+|++|++.+.
T Consensus       740 ELLNMY--------VGqSE~NVR~VFerAR~A-~PCVIFFDELDSl  776 (953)
T KOG0736|consen  740 ELLNMY--------VGQSEENVREVFERARSA-APCVIFFDELDSL  776 (953)
T ss_pred             HHHHHH--------hcchHHHHHHHHHHhhcc-CCeEEEecccccc
Confidence            222110        122333333333333444 9999999998764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.38  E-value=0.0033  Score=51.81  Aligned_cols=27  Identities=22%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|++|+|||||.+.+....
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999997653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.38  E-value=0.0033  Score=52.55  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            356799999999999999999997653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.38  E-value=0.0068  Score=55.53  Aligned_cols=50  Identities=18%  Similarity=0.157  Sum_probs=39.1

Q ss_pred             cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC
Q 045699          150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD  201 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~  201 (266)
                      .++|++..++.+...+.  .-..+.|.|++|+|||+||+.+.........|.
T Consensus        21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~   70 (498)
T PRK13531         21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNARAFE   70 (498)
T ss_pred             hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence            57889888888877764  346788999999999999999998764333444

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.38  E-value=0.027  Score=53.36  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|+.|+|||||++.+..-.
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~  390 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAW  390 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999997754

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=96.38  E-value=0.011  Score=45.56  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEcCCCCcHHHHHHHHHHHhc
Q 045699          175 LCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       175 I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |+|++|+||||+|+.+.....
T Consensus         1 i~G~PgsGK~t~~~~la~~~~   21 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYG   21 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHT
T ss_pred             CcCCCCCChHHHHHHHHHhcC
Confidence            789999999999999999754

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.38  E-value=0.0033  Score=52.56  Aligned_cols=27  Identities=33%  Similarity=0.630  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.37  E-value=0.003  Score=51.76  Aligned_cols=27  Identities=30%  Similarity=0.494  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|.+|+|||||++.+..-.
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.37  E-value=0.0018  Score=52.04  Aligned_cols=21  Identities=29%  Similarity=0.197  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ++.|.|++|.||||+.+.+.-
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999973

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.37  E-value=0.017  Score=48.10  Aligned_cols=28  Identities=32%  Similarity=0.558  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+.+++|.+|+||||..+++.+-..
T Consensus        26 ~~G~i~GllG~NGAGKTTtfRmILglle   53 (300)
T COG4152          26 PPGEIFGLLGPNGAGKTTTFRMILGLLE   53 (300)
T ss_pred             cCCeEEEeecCCCCCccchHHHHhccCC
Confidence            4568999999999999999999988654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.36  E-value=0.0027  Score=51.94  Aligned_cols=23  Identities=43%  Similarity=0.683  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +++|+|++|+|||||++.+..-.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999998653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.35  E-value=0.031  Score=49.90  Aligned_cols=88  Identities=20%  Similarity=0.339  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC-CCCCHHHHHHHHHHHhcCC--------CCCCC-----
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS-RTPDVKRIQGDVADQLSLN--------ICEGS-----  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~~~--------~~~~~-----  233 (266)
                      ..-..++|+.-.|+|||||.-++.+..    .+|..+-.-+. ..-...++..+.+..-+..        .+...     
T Consensus       161 G~GQRiGIFAgsGVGKStLLgMiar~t----~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~  236 (441)
T COG1157         161 GKGQRIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLK  236 (441)
T ss_pred             ccCceeEEEecCCCcHHHHHHHHhccc----cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHH
Confidence            456899999999999999999999864    46666555554 3445667777776655442        12222     


Q ss_pred             HHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          234 ESERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       234 ~~~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      ....+..+.+|+++ ||+.|+++|-+.
T Consensus       237 aa~~At~IAEyFRDqG~~VLL~mDSlT  263 (441)
T COG1157         237 AAFTATTIAEYFRDQGKRVLLIMDSLT  263 (441)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeecHH
Confidence            22345678888886 799999999774

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.34  E-value=0.0034  Score=51.92  Aligned_cols=27  Identities=33%  Similarity=0.543  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+....
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.34  E-value=0.0036  Score=52.24  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            56899999999999999999998653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.34  E-value=0.0032  Score=51.25  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+....
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45789999999999999999998764

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14528 adenylate kinase; Provisional

Probab=96.34  E-value=0.011  Score=47.44  Aligned_cols=25  Identities=40%  Similarity=0.581  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|.|.|++|+||||+|+.+.....
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999977653

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=96.34  E-value=0.033  Score=51.56  Aligned_cols=90  Identities=17%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCe-EEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HH-
Q 045699          168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDE-VVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ES-  235 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~-~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~-  235 (266)
                      .+-..++|+|..|+|||||| ..+.+..    ..+. ++++.+++..+ ..++...+...-...       ..+.+ .. 
T Consensus       159 grGQr~~I~g~~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r  234 (501)
T TIGR00962       159 GRGQRELIIGDRQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQ  234 (501)
T ss_pred             ccCCEEEeecCCCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHH
Confidence            35678999999999999995 6777753    2355 48888887643 445555555432221       11111 11 


Q ss_pred             ----HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          236 ----ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       236 ----~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                          .....+.+++++ |+..|||+||+...
T Consensus       235 ~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~  265 (501)
T TIGR00962       235 YLAPYTGCTMAEYFRDNGKHALIIYDDLSKH  265 (501)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEecchHHH
Confidence                123345666665 69999999998654

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.34  E-value=0.027  Score=53.29  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|..|+|||||++.+....
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~  382 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFY  382 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            457899999999999999999997664

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.33  E-value=0.0045  Score=50.62  Aligned_cols=30  Identities=30%  Similarity=0.399  Sum_probs=26.2

Q ss_pred             hCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +...++++|+++|+.|+|||||...+....
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445679999999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.33  E-value=0.017  Score=57.11  Aligned_cols=46  Identities=22%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             ccccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          149 EAFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..++|.+..++.+...+.       ++  ....+.++|+.|+|||+||+.+.+..
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l  563 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF  563 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            446788888888876653       11  23467789999999999999998764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.32  E-value=0.0038  Score=50.89  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|+|.+|+|||||++.+....
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999998764

>PRK13947 shikimate kinase; Provisional

Probab=96.32  E-value=0.0037  Score=49.30  Aligned_cols=24  Identities=42%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|+|+.|+||||+++.+.+...
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.32  E-value=0.0032  Score=51.94  Aligned_cols=26  Identities=35%  Similarity=0.514  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            56899999999999999999997653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PLN03232 ABC transporter C family member; Provisional

Probab=96.32  E-value=0.028  Score=59.13  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....++|+|+.|+|||||++.+.....
T Consensus       641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~  668 (1495)
T PLN03232        641 PVGSLVAIVGGTGEGKTSLISAMLGELS  668 (1495)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            4568999999999999999999988654

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.32  E-value=0.031  Score=52.96  Aligned_cols=27  Identities=30%  Similarity=0.602  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .....++|+|++|+|||||++.+..-.
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~  365 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHF  365 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            457899999999999999999997653

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=96.32  E-value=0.025  Score=53.24  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|++|+|||||++.+..-.
T Consensus       342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  368 (544)
T TIGR01842       342 QAGEALAIIGPSGSGKSTLARLIVGIW  368 (544)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999997764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.31  E-value=0.0049  Score=47.97  Aligned_cols=27  Identities=41%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..+|-|.|..|+||||||+.+......
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~   28 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFA   28 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            357889999999999999999998763

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.31  E-value=0.022  Score=47.93  Aligned_cols=93  Identities=18%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV  214 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  214 (266)
                      +.++-|-.+.+++|.+...    +         +..+=|.++|+.|.|||-+|+.|.|.-.       .+|+.|-.+   
T Consensus       176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-------acfirvigs---  245 (435)
T KOG0729|consen  176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-------ACFIRVIGS---  245 (435)
T ss_pred             cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-------ceEEeehhH---
Confidence            4556677777776655432    1         3456788999999999999999999643       223333221   


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                           ++.+.-     ......+...|.+.-+..|-|+|++|+|.-
T Consensus       246 -----elvqky-----vgegarmvrelf~martkkaciiffdeida  281 (435)
T KOG0729|consen  246 -----ELVQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDA  281 (435)
T ss_pred             -----HHHHHH-----hhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence                 222211     112234455555555554789999998853

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0067  Score=56.39  Aligned_cols=74  Identities=22%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKG  248 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~  248 (266)
                      ..+.+-++|+.|+|||.||+.+.+...  .+|-.+     ...    .++    .    .+-..+...+........+. 
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v-----~~~----~l~----s----k~vGesek~ir~~F~~A~~~-  334 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISV-----KGS----ELL----S----KWVGESEKNIRELFEKARKL-  334 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEe-----eCH----HHh----c----cccchHHHHHHHHHHHHHcC-
Confidence            456899999999999999999999654  233222     211    111    1    11122223333344444555 


Q ss_pred             CeEEEEEeCCCCCC
Q 045699          249 KKILFVLDNIWTSL  262 (266)
Q Consensus       249 kr~LlvlDDvw~~~  262 (266)
                      ..+.|++|++.+-.
T Consensus       335 ~p~iiFiDEiDs~~  348 (494)
T COG0464         335 APSIIFIDEIDSLA  348 (494)
T ss_pred             CCcEEEEEchhhhh
Confidence            88999999987654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=96.29  E-value=0.016  Score=54.75  Aligned_cols=26  Identities=38%  Similarity=0.681  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +....++|+|++|+|||||++.+..-
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~  391 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGL  391 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999664

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK14530 adenylate kinase; Provisional

Probab=96.29  E-value=0.0041  Score=51.17  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|+|+.|+||||+++.+.....
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987653

>PRK13975 thymidylate kinase; Provisional

Probab=96.29  E-value=0.0042  Score=50.10  Aligned_cols=25  Identities=36%  Similarity=0.569  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|.|+.|+||||+++.+.....
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999875

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.29  E-value=0.0035  Score=52.13  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356799999999999999999997764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=96.28  E-value=0.041  Score=47.86  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             ccchHHHHHHHHHHhC-CCCCcE-EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          151 FESRKSILNDALDALS-NPNVDV-IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +++-+.....+..+.. ..+... +.++|+.|+||||+|..+.+..-
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence            3455556667777765 445666 99999999999999999988754

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=96.28  E-value=0.024  Score=53.08  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|+.|+|||||++.+..-.
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  372 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFV  372 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999997654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.28  E-value=0.013  Score=46.61  Aligned_cols=25  Identities=32%  Similarity=0.543  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-..++|+|-+|+||+|||+++..-
T Consensus        38 ~~QTlaiIG~NGSGKSTLakMlaGm   62 (267)
T COG4167          38 EGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             CCcEEEEEccCCCcHhHHHHHHhcc
Confidence            4578999999999999999999654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.28  E-value=0.0041  Score=51.51  Aligned_cols=27  Identities=33%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+....
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            356799999999999999999998764

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=96.27  E-value=0.04  Score=49.98  Aligned_cols=89  Identities=18%  Similarity=0.209  Sum_probs=58.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHHHhcC-------CC-CCCCHH----
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVADQLSL-------NI-CEGSES----  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~~~~~-------~~-~~~~~~----  235 (266)
                      .-..++|+|-.|+|||+|+.++.+..+    -+.++++.++..... .++..++...-..       .. +.....    
T Consensus       139 rGQkigIF~gaGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~  214 (436)
T PRK02118        139 ESQKIPIFSVSGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLV  214 (436)
T ss_pred             cCCEEEEEeCCCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence            467899999999999999999988653    256788888876543 3444444433221       11 111221    


Q ss_pred             -HHHHHHHHHHhc-C-CeEEEEEeCCCCC
Q 045699          236 -ERAMMLCGQLKK-G-KKILFVLDNIWTS  261 (266)
Q Consensus       236 -~~~~~l~~~L~~-~-kr~LlvlDDvw~~  261 (266)
                       ..+..+.+++++ + +..|+++||+.+.
T Consensus       215 ~~~AltiAEyfrd~g~~~VLli~DdlTr~  243 (436)
T PRK02118        215 PDMALAVAEKFALEGKKKVLVLLTDMTNF  243 (436)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEeccCchHH
Confidence             224456777876 3 8999999998764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.27  E-value=0.0041  Score=51.76  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            346799999999999999999998764

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.27  E-value=0.0037  Score=51.97  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|.+|+|||||++.+..-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=96.26  E-value=0.019  Score=46.70  Aligned_cols=23  Identities=48%  Similarity=0.705  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ..+|+|.|+.|+||||.|+.+-+
T Consensus         2 ~~iIglTG~igsGKStva~~~~~   24 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE   24 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH
Confidence            46899999999999999998877

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.26  E-value=0.0042  Score=51.65  Aligned_cols=27  Identities=33%  Similarity=0.542  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|.+|+|||||++.+..-..
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999987643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.25  E-value=0.0038  Score=51.98  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            46799999999999999999998753

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK05439 pantothenate kinase; Provisional

Probab=96.24  E-value=0.024  Score=49.24  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...-+|+|.|..|+||||+|+.+.....
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999987653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.24  E-value=0.0045  Score=50.68  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=96.23  E-value=0.034  Score=52.89  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|++|+|||||++.+..-.
T Consensus       359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~  385 (585)
T TIGR01192       359 KAGQTVAIVGPTGAGKTTLINLLQRVY  385 (585)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHccCC
Confidence            467899999999999999999996653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.23  E-value=0.0043  Score=51.90  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.+++|+|++|+|||||++.+...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35679999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	6e-16
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.4 bits (187), Expect = 6e-16
 Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 65/275 (23%)

Query: 20  IPGQLRNYKSNFADLKKKTEKLK--LTIEDLQLWVDAAKENGEEIEQSVER--W-LISAN 74
           +      +  NF D K   +  K  L+ E+    +D    + + +     R  W L+S  
Sbjct: 22  LSVFEDAFVDNF-DCKDVQDMPKSILSKEE----IDHIIMSKDAVSG-TLRLFWTLLSKQ 75

Query: 75  TTVVEAGKLIEDEEKEKKKCLKGLCPN---LMNRYQL-SKKAAWEVKAIAGLLEEGKFDE 130
             +V+  K +E+           L  N   LM+  +   ++ +   +      +    D 
Sbjct: 76  EEMVQ--KFVEE----------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 131 VSFC----TRPEGILLMCSEGYEAFESRKSILNDALDAL-SNPNVDVIGLCGVGGIGKTT 185
             F     +R +  L                L  AL  L    NV    + GV G GKT 
Sbjct: 124 QVFAKYNVSRLQPYL---------------KLRQALLELRPAKNV---LIDGVLGSGKTW 165

Query: 186 LAKIVC-DQAKKLKVCDEVVFVEVSR--TPD-VKRIQGDVADQLSLNICEGSE-SERAMM 240
           +A  VC     + K+  ++ ++ +    +P+ V  +   +  Q+  N    S+ S    +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 241 LCGQLKKGKKILF----------VLDNIWTSLDLE 265
               ++   + L           VL N+  +    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 33/115 (28%)

Query: 4   FIFS----IPAKVLGQL--------VGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLW 51
            +F     IP  +L  +        V  +  +L  Y    + ++K+ ++  ++I  + L 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKESTISIPSIYLE 434

Query: 52  VDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMNRY 106
           +    EN    E ++ R              +++     K      L P  +++Y
Sbjct: 435 LKVKLEN----EYALHR-------------SIVDHYNIPKTFDSDDLIPPYLDQY 472

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 76.2 bits (187), Expect = 6e-16
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 152 ESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVEVS 209
           E     +   LD + + +   + L G  G GK+ +A     ++ +L     D +V+++ S
Sbjct: 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 193

Query: 210 RTPDVK----------RIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIW 259
            T               ++ +       ++   +      M+C  L      LFV D++ 
Sbjct: 194 GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV 253

Query: 260 TSLDLE 265
               + 
Sbjct: 254 QEETIR 259

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 30/227 (13%)

Query: 45  IEDLQLWVDAAKENGEEIEQSVERWLISANTTVVEAGKLIEDEEKEKKKCLKGLCPNLMN 104
            E ++      +     I+  +++   S  +       L+ +  K+    L    P + +
Sbjct: 40  EEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYN---ALLHEGYKDLAALLHDGIPVVSS 96

Query: 105 RYQLSKKAAWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDA 164
                  +         L E G                     +   +   + +   L  
Sbjct: 97  SSGKDSVSGITSYVRTVLCEGGVPQR--------------PVVFVTRKKLVNAIQQKLSK 142

Query: 165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFVEVSRTPDVKRIQGDVA 222
           L       + + G+ G GK+ LA         L+ C    V +V V +      +   + 
Sbjct: 143 L-KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLM-KLQ 200

Query: 223 DQLSLNICEGSESERAMMLCGQLK---------KGKKILFVLDNIWT 260
           +  +    + S S+R  +   + K         K  + L +LD++W 
Sbjct: 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD 247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 20/131 (15%)

Query: 151 FESRKSILNDALDALSNPNVD--VIGLCGVGGIGKTTLAKIVCDQAKKLKVC--DEVVFV 206
           F +RK +++     L   N +   + + G+ G GK+ LA         L+ C    V +V
Sbjct: 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWV 185

Query: 207 EVSRTPD----------VKRIQGD--VADQLSLNICEGSESERAMMLCGQLKKGKKILFV 254
            + +               R+  +   + +L LNI E  +  R +ML     K  + L +
Sbjct: 186 SIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR----KHPRSLLI 241

Query: 255 LDNIWTSLDLE 265
           LD++W    L+
Sbjct: 242 LDDVWDPWVLK 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.84
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.71
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.65
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.6
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.32
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.23
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.05
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.02
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.01
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.98
2fna_A	357	Conserved hypothetical protein; structural genomic	98.77
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.76
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.6
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.48
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.43
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.39
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.23
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.19
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.18
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.16
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.08
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.03
3pvs_A	447	Replication-associated recombination protein A; ma	98.02
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.01
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.95
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.94
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.94
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.93
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.9
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.9
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.9
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.88
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.88
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.86
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.83
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.83
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.81
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.8
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.79
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.77
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.77
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.68
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.65
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.64
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.63
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.62
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.62
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.61
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.61
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.58
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.55
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.55
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.55
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.55
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.54
3bos_A	242	Putative DNA replication factor; P-loop containing	97.53
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.52
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.51
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.51
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.5
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.5
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.49
3co5_A	143	Putative two-component system transcriptional RES	97.49
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.48
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.48
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.47
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.47
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.46
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.45
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.45
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.45
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.43
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.43
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.42
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.42
3ice_A	422	Transcription termination factor RHO; transcriptio	97.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.41
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.4
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.39
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.38
3io5_A	333	Recombination and repair protein; storage dimer, i	97.36
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.36
2qgz_A	308	Helicase loader, putative primosome component; str	97.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.34
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.32
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.32
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.31
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.31
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.31
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.3
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.3
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.29
2xxa_A	433	Signal recognition particle protein; protein trans	97.27
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.21
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.21
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.21
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.14
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.1
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.1
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.1
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.07
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.06
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.05
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.04
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.04
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.02
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.01
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.01
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.99
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.98
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.97
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.97
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.97
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.95
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	96.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.94
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.94
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.93
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.91
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.9
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.9
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.86
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.86
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.84
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.83
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.82
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.82
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.81
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.81
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.79
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.77
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.77
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.77
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.77
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.76
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.75
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.74
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.72
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.71
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.7
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.7
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.7
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.68
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.67
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.65
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.65
1g6h_A	257	High-affinity branched-chain amino acid transport	96.65
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.64
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.64
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.64
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.64
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.63
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.63
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.62
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.62
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.62
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.62
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.61
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.61
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.6
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.6
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.59
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.59
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.58
1via_A	175	Shikimate kinase; structural genomics, transferase	96.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.57
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.57
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.57
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.56
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.56
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.55
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.55
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.55
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.54
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.53
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.52
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.52
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.52
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.51
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.5
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	96.49
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.48
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.45
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.45
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.45
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.45
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	96.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.44
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	96.44
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.44
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.44
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.4
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.4
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.4
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.39
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.39
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.37
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.35
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.35
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	96.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.34
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.34
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.33
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.3
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.3
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.29
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.29
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.28
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.28
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	96.28
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.28
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.28
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.26
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.25
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.23
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	96.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.22
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.21
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.2
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.2
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.18
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.18
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.18
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.17
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.16
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.12
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.11
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.1
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.1
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.09
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.07
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	96.07
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.07
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.06
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.04
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	96.03
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.01
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.01
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.99
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.99
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.97
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.96
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.93
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.93
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.92
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.9
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.87
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.86
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.84
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.8
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.8
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.78
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.76
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.76
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.75
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	95.74
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.74
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.73
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.72
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.67
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.66
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.66
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.64
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.64
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	95.63
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.62
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.61
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.57
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.56
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.55
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.54
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.52
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.52
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.52
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.51
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.51
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.48
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.48
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.46
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	95.43
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.42
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.42
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.41
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.39
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.38
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.36
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.35
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.32
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.32
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.26
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.25
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.24
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.23
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.22
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.22
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.19
3end_A	307	Light-independent protochlorophyllide reductase ir	95.18
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.18
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.17
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.17
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.16
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.16
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.16
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.14
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.12
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	95.09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.08
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.08
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.05
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.04
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.03
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.02
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.02
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.01
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.01
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.99
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.97
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.9
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.88
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.88
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	94.86
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.84
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.83
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.8
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.8
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.8
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.77
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.76
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.75
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	94.75
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.72
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.7
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.7
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.69
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.65
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.63
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.63
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.62
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.61
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.6
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.59
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.59
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.58
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.53
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.53
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.51
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.5
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.49
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.49
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.49
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.48
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.47
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.46
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.45
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	94.44
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.44
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.43
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.43
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.42
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.41
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.41
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.4
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.4
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.39
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.38
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.38
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.37
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.37
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.36
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.35
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.33
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.33
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.32
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.3
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.3
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.29
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.27
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.25
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.24
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.24
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.23
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.23
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.21
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	94.2
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.19
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.16
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.12
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.08
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.07
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.05
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.03
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.03
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.02
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.01
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	93.98
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.96
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.91
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	93.89
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.89
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	93.88
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.87
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	93.86
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.86
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	93.84
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.82
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.79
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	93.79

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.84  E-value=5.7e-21  Score=177.22  Aligned_cols=110  Identities=19%  Similarity=0.199  Sum_probs=95.2

Q ss_pred             cchHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHH--HhccccCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 045699          152 ESRKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCD--QAKKLKVCDEVVFVEVSRTP--DVKRIQGDVADQ  224 (266)
Q Consensus       152 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~f~~~~wv~v~~~~--~~~~~~~~i~~~  224 (266)
                      +||+.++++|.++|..   ...++|+|+||||+||||||+.+|+  +..++.+|++++||++++.+  ++..++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            4999999999999853   3689999999999999999999998  56777899999999999985  889999999999


Q ss_pred             hcCCC--------CCCCHHHHHHHHHHHHhcCC-eEEEEEeCCCCCC
Q 045699          225 LSLNI--------CEGSESERAMMLCGQLKKGK-KILFVLDNIWTSL  262 (266)
Q Consensus       225 ~~~~~--------~~~~~~~~~~~l~~~L~~~k-r~LlvlDDvw~~~  262 (266)
                      ++...        ...+...+...+++.|.+ | ||||||||||+..
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~  256 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEE  256 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHH
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCch
Confidence            98642        123456678899999997 7 9999999999864

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.71  E-value=6.3e-18  Score=163.04  Aligned_cols=113  Identities=20%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             ccchHHHHHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCHHHHHHHHHHHhcC-
Q 045699          151 FESRKSILNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE-VVFVEVSRTPDVKRIQGDVADQLSL-  227 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~-~~wv~v~~~~~~~~~~~~i~~~~~~-  227 (266)
                      .+||+.+++.|.++|.. +..++|+|+||||+||||||+.+|++.+++.+|++ ++|+++++.++...++..|+..++. 
T Consensus       130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i  209 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI  209 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence            49999999999999864 55899999999999999999999998777788986 9999999999998988888875432 


Q ss_pred             --CCC---C------CCHHHHHHHHHHHH---hcCCeEEEEEeCCCCCCCC
Q 045699          228 --NIC---E------GSESERAMMLCGQL---KKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       228 --~~~---~------~~~~~~~~~l~~~L---~~~kr~LlvlDDvw~~~~~  264 (266)
                        ...   .      .+.+++...|.+.|   .+ |||||||||||+...|
T Consensus       210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqL  259 (1221)
T 1vt4_I          210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAW  259 (1221)
T ss_dssp             CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHH
T ss_pred             CcccccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHH
Confidence              111   1      12344566777766   55 9999999999986544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.65  E-value=1.9e-16  Score=158.68  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=92.3

Q ss_pred             CcccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCC-CeEEEEEeCCCCC--HHHHHHH
Q 045699          147 GYEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK-LKVC-DEVVFVEVSRTPD--VKRIQGD  220 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~--~~~~~~~  220 (266)
                      +...|+||+.++++|.++|.  +...++|+|+||||+||||||+.+|++.+. ..+| +.+.|+++++..+  ....+..
T Consensus       122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  201 (1249)
T 3sfz_A          122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN  201 (1249)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred             CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence            35679999999999999984  457899999999999999999999998543 3445 6788999998654  3344667


Q ss_pred             HHHHhcCCC-----CCCCHHHHHHHHHHHHhcCC--eEEEEEeCCCCCCCCC
Q 045699          221 VADQLSLNI-----CEGSESERAMMLCGQLKKGK--KILFVLDNIWTSLDLE  265 (266)
Q Consensus       221 i~~~~~~~~-----~~~~~~~~~~~l~~~L~~~k--r~LlvlDDvw~~~~~~  265 (266)
                      ++..+....     ...+..++...++..|.. +  ||||||||||+..+|+
T Consensus       202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~LlvlDd~~~~~~~~  252 (1249)
T 3sfz_A          202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLK  252 (1249)
T ss_dssp             HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS-SSCSCEEEEESCCCHHHHT
T ss_pred             HHHHhhhhcccccCCCCCHHHHHHHHHHHHhc-cCCCEEEEEecCCCHHHHH
Confidence            777776532     134567788888988887 6  9999999999876554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=140.10  Aligned_cols=114  Identities=21%  Similarity=0.265  Sum_probs=87.3

Q ss_pred             cccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCC-CeEEEEEeCCCCCHHHHHHHH--
Q 045699          148 YEAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK-LKVC-DEVVFVEVSRTPDVKRIQGDV--  221 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f-~~~~wv~v~~~~~~~~~~~~i--  221 (266)
                      ...|+||+.+++.|.++|.  ....++|+|+||||+||||||+.+|++..+ ..+| +.++|++++.. +...++..+  
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~  201 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN  201 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence            5579999999999999986  356789999999999999999999998654 5788 58999999876 344444444  


Q ss_pred             -HHHhcC-----CCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCCC
Q 045699          222 -ADQLSL-----NICEGSESERAMMLCGQLKKG-KKILFVLDNIWTSL  262 (266)
Q Consensus       222 -~~~~~~-----~~~~~~~~~~~~~l~~~L~~~-kr~LlvlDDvw~~~  262 (266)
                       +..++.     .....+...+...+...|.+. +++||||||+|+..
T Consensus       202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~  249 (591)
T 1z6t_A          202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW  249 (591)
T ss_dssp             HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH
T ss_pred             HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH
Confidence             345542     112345667778888888752 68999999999754

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.32  E-value=7.6e-12  Score=91.71  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHhhhHHH
Q 045699           31 FADLKKKTEKLKLTIEDLQLWVDAAKENG-EEIEQSVERWLISANTTVVEAGKLIED   86 (266)
Q Consensus        31 ~~~l~~el~~l~~~l~~i~~~l~~ae~~~-~~~~~~~~~Wl~~vr~~a~d~ed~ld~   86 (266)
                      ...++++++.|+..|+.|++++.+++... ...++.++.|+.+||+++||+|||+|+
T Consensus        21 ~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~   77 (115)
T 3qfl_A           21 HKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDK   77 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555666667777653 224889999999999999999999998

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.23  E-value=4.4e-11  Score=106.28  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=85.5

Q ss_pred             cccccchHHHHHHHHHHh-C----C--CCCcEEEE--EcCCCCcHHHHHHHHHHHhccc---cCCC-eEEEEEeCCCCCH
Q 045699          148 YEAFESRKSILNDALDAL-S----N--PNVDVIGL--CGVGGIGKTTLAKIVCDQAKKL---KVCD-EVVFVEVSRTPDV  214 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~f~-~~~wv~v~~~~~~  214 (266)
                      +..++||+.+++.|.+++ .    .  .....+.|  +|++|+|||||++.+++.....   ..|+ ..+|+.+....+.
T Consensus        21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (412)
T 1w5s_A           21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL  100 (412)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence            357899999999998887 3    2  24556666  9999999999999999886431   1233 3578887777889


Q ss_pred             HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          215 KRIQGDVADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       215 ~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      ..++..|+.+++....  ..+..++...+.+.|.. +++++|||||+|..
T Consensus       101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l  150 (412)
T 1w5s_A          101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM  150 (412)
T ss_dssp             HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence            9999999999976433  33455666777777752 38999999999863

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.05  E-value=2.2e-09  Score=94.17  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---C-CCeEEEEEeCCCCCHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---V-CDEVVFVEVSRTPDVKRIQG  219 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~-f~~~~wv~v~~~~~~~~~~~  219 (266)
                      +..++||+.+++.+..++.    ......+.|+|++|+||||||+.+++......   . --..+|++++...+...++.
T Consensus        18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   97 (387)
T 2v1u_A           18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS   97 (387)
T ss_dssp             CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence            3678999999999999873    34567899999999999999999998764210   1 23467888888888999999


Q ss_pred             HHHHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          220 DVADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       220 ~i~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      .++.+++....  ..+..++...+...+.. +++.+|||||+..
T Consensus        98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~  141 (387)
T 2v1u_A           98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF  141 (387)
T ss_dssp             HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred             HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence            99999977433  33466667777777753 3689999999975

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.04  E-value=5.6e-10  Score=97.92  Aligned_cols=114  Identities=20%  Similarity=0.272  Sum_probs=85.8

Q ss_pred             cccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC-CCeEEEEEeCCCCCHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV-CDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      +..++||+.+++.+.+++.    ......+.|+|++|+|||||++.+++....... --..+|+.++...+...++..++
T Consensus        19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~   98 (386)
T 2qby_A           19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL   98 (386)
T ss_dssp             CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999998886    445679999999999999999999997642211 23567787777777888888888


Q ss_pred             HHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          223 DQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       223 ~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      .+++....  ..+..+....+.+.+.. +++.+|||||++..
T Consensus        99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l  140 (386)
T 2qby_A           99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAF  140 (386)
T ss_dssp             TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHH
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhh
Confidence            88765432  33456666777777764 25899999998753

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.02  E-value=1.2e-09  Score=96.02  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=83.6

Q ss_pred             ccccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cC--CCeEEEEEeCCCC-CHHHH
Q 045699          149 EAFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KV--CDEVVFVEVSRTP-DVKRI  217 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~--f~~~~wv~v~~~~-~~~~~  217 (266)
                      ..++||+.+++.+.+++.    ......+.|+|++|+||||||+.+++.....    ..  ....+|++++... +...+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   99 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV   99 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence            678999999998886663    4456789999999999999999999986322    11  3456788877766 88899


Q ss_pred             HHHHHHHhc-CCC--CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          218 QGDVADQLS-LNI--CEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       218 ~~~i~~~~~-~~~--~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      +..++.++. ...  ...+..++...+...+.. ++.+|||||++.
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~  144 (384)
T 2qby_B          100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDT  144 (384)
T ss_dssp             HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHH
T ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHH
Confidence            999998883 222  223345667778888887 666999999965

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.01  E-value=7.6e-10  Score=95.86  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC------CHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP------DVKRIQGDV  221 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~------~~~~~~~~i  221 (266)
                      ...++||+.+++.|.+++...  .++.|+|+.|+|||||++.+.+..      . .+|+.+....      +...++..+
T Consensus        11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l   81 (350)
T 2qen_A           11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKEL   81 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred             hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHHH
Confidence            456899999999999988643  799999999999999999999864      1 6677665432      566677777


Q ss_pred             HHHhcC-----------------CC--CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699          222 ADQLSL-----------------NI--CEGSESERAMMLCGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       222 ~~~~~~-----------------~~--~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~  262 (266)
                      ...+..                 ..  ...+..++...+.......++++|||||++...
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~  141 (350)
T 2qen_A           82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR  141 (350)
T ss_dssp             HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred             HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence            665532                 11  113445566666666653148999999997643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.98  E-value=6.1e-09  Score=91.58  Aligned_cols=113  Identities=21%  Similarity=0.255  Sum_probs=85.2

Q ss_pred             cccccchHHHHHHHHHHhCC----CCCc--EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSN----PNVD--VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      +..++||+.+++.+..++..    ....  .+.|+|+.|+|||||++.+.+...... --..+|++++...+...+...+
T Consensus        16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l   94 (389)
T 1fnn_A           16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEI   94 (389)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence            35789999999999888743    3334  899999999999999999999865221 1356778888888888999999


Q ss_pred             HHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          222 ADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       222 ~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      +.+++....  ..+..++...+...+.. +++.+|||||+...
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l  137 (389)
T 1fnn_A           95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL  137 (389)
T ss_dssp             HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred             HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence            999876433  33456666677766653 36889999998753

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.77  E-value=3.2e-08  Score=85.72  Aligned_cols=69  Identities=13%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-----CCHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-----PDVKRIQGDVA  222 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-----~~~~~~~~~i~  222 (266)
                      ...++||+.+++.|.+ +..   .++.|+|+.|+|||||++.+.+...  .   ..+|+.+...     .+...++..+.
T Consensus        12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (357)
T 2fna_A           12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQ   82 (357)
T ss_dssp             GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred             HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence            4578999999999999 765   6999999999999999999998764  1   2578877642     34455555554


Q ss_pred             HHh
Q 045699          223 DQL  225 (266)
Q Consensus       223 ~~~  225 (266)
                      +.+
T Consensus        83 ~~l   85 (357)
T 2fna_A           83 KEI   85 (357)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.76  E-value=6.9e-08  Score=82.93  Aligned_cols=111  Identities=12%  Similarity=0.101  Sum_probs=76.9

Q ss_pred             cccchHHHHHHHHHHhC----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccC---C-C-eEEEEEeCCCCCHHHHHHH
Q 045699          150 AFESRKSILNDALDALS----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV---C-D-EVVFVEVSRTPDVKRIQGD  220 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~---f-~-~~~wv~v~~~~~~~~~~~~  220 (266)
                      -+.+|+.+.+.|...|.    ......+-|+|+.|+|||++++.|.+.......   . . ..+++++....+...++..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~  100 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence            37899999998887663    567788999999999999999999998753211   1 1 3567777777888999999


Q ss_pred             HHHHhcCCC-CCCCHHHHHHHHHHHH---hcCCeEEEEEeCCCCC
Q 045699          221 VADQLSLNI-CEGSESERAMMLCGQL---KKGKKILFVLDNIWTS  261 (266)
Q Consensus       221 i~~~~~~~~-~~~~~~~~~~~l~~~L---~~~kr~LlvlDDvw~~  261 (266)
                      |++++.... ......+....+...+   .. +.++|+||++...
T Consensus       101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~-~~~ii~lDE~d~l  144 (318)
T 3te6_A          101 IWFAISKENLCGDISLEALNFYITNVPKAKK-RKTLILIQNPENL  144 (318)
T ss_dssp             HHHHHSCCC--CCCCHHHHHHHHHHSCGGGS-CEEEEEEECCSSS
T ss_pred             HHHHhcCCCCCchHHHHHHHHHHHHhhhccC-CceEEEEecHHHh
Confidence            999996531 1111122233333333   33 7899999998764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.69  E-value=1.4e-07  Score=75.81  Aligned_cols=68  Identities=13%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK  215 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~  215 (266)
                      ..+++|++..++.+.+++.......+.|+|+.|+|||+||+.+++.......-...+.+..+...+..
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID   83 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence            56789999999999999876666669999999999999999999875322111233444444444433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.60  E-value=1.4e-07  Score=74.04  Aligned_cols=48  Identities=17%  Similarity=0.260  Sum_probs=42.5

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|++.+++.+.+++.......+.|+|+.|+|||+||+.+.+...
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            557899999999999998776677889999999999999999998753

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.48  E-value=6.8e-07  Score=72.59  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=41.2

Q ss_pred             CcccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+..++.... ...+.|+|++|+||||||+.+++...
T Consensus        21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35678999999999998886433 45899999999999999999998765

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.43  E-value=4.1e-07  Score=71.11  Aligned_cols=49  Identities=20%  Similarity=0.229  Sum_probs=42.8

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....++|++.+++.+.+.+.......+.|+|+.|+||||||+.+.+...
T Consensus        20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3557899999999999998776677889999999999999999998764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.39  E-value=6e-07  Score=76.68  Aligned_cols=49  Identities=18%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+.+++.......+.++|++|+||||+|+.+++...
T Consensus        19 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           19 VLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             SGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3567899999999999998766665699999999999999999998853

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.23  E-value=3.1e-06  Score=66.35  Aligned_cols=90  Identities=18%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 045699          154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC  230 (266)
Q Consensus       154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~  230 (266)
                      ....++.+.+++.+   .....+.|+|++|+|||||++.+++.......+. ++++      +..++...+.........
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~   91 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD   91 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence            44445555555432   3467899999999999999999999864222222 2233      344555554443322111


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          231 EGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       231 ~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      .        .+.+.+.  +.-+|||||++.
T Consensus        92 ~--------~~~~~~~--~~~llilDE~~~  111 (180)
T 3ec2_A           92 T--------KFLKTVL--NSPVLVLDDLGS  111 (180)
T ss_dssp             S--------HHHHHHH--TCSEEEEETCSS
T ss_pred             H--------HHHHHhc--CCCEEEEeCCCC
Confidence            1        2223333  355788888874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.19  E-value=4e-06  Score=66.84  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhCCC----CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 045699          155 KSILNDALDALSNP----NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC  230 (266)
Q Consensus       155 ~~~~~~l~~~l~~~----~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~  230 (266)
                      ...++.+.+++...    ....+.|+|++|+||||||+.+++....  .....+|++++      .+...+...+.    
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~----  102 (202)
T 2w58_A           35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYVP------ELFRELKHSLQ----  102 (202)
T ss_dssp             HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEHH------HHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEhH------HHHHHHHHHhc----
Confidence            34455555555422    1278999999999999999999998753  23345566543      44444433221    


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          231 EGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       231 ~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                      ..+..    .+.+.+.+ . -+|||||++.
T Consensus       103 ~~~~~----~~~~~~~~-~-~~lilDei~~  126 (202)
T 2w58_A          103 DQTMN----EKLDYIKK-V-PVLMLDDLGA  126 (202)
T ss_dssp             -CCCH----HHHHHHHH-S-SEEEEEEECC
T ss_pred             cchHH----HHHHHhcC-C-CEEEEcCCCC
Confidence            11111    22334444 3 3899999965

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.18  E-value=8.6e-06  Score=68.46  Aligned_cols=49  Identities=27%  Similarity=0.314  Sum_probs=39.5

Q ss_pred             CcccccchHHHHHHHHHHhCC-------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSN-------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.|.+.+..             .....+.|+|+.|+|||+||+.+.+...
T Consensus        15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            356789999988888776631             3456799999999999999999998754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.16  E-value=2.1e-06  Score=73.41  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+.+++.......+.++|+.|+||||+|+.+++...
T Consensus        23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3567899999999999988766666799999999999999999998753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.08  E-value=3.6e-05  Score=66.17  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=36.4

Q ss_pred             cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..++.|.+..++.|.+.+.            ....+-+.++|+.|+|||+||+.+.+..
T Consensus        11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence            5567888887777766541            1234678999999999999999999975

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.08  E-value=2.4e-05  Score=64.73  Aligned_cols=48  Identities=23%  Similarity=0.220  Sum_probs=35.2

Q ss_pred             cccccchHHHHHHHHHHh---CC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDAL---SN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.|.+++   ..         .....+.|+|+.|+|||+||+.+.+...
T Consensus         5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A            5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            456778777766665443   21         2345688999999999999999999764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.03  E-value=4.9e-05  Score=64.22  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             cccccchHHHHHHHHHHhCC------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSN------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.|.+.+..            .....+.|+|+.|+||||||+.+.+...
T Consensus        20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            56788998888888776521            2356889999999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.02  E-value=2.9e-05  Score=69.82  Aligned_cols=51  Identities=25%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             cCCcccccchHHHH---HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSIL---NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....+++|.+..+   ..|...+.......+.++|+.|+||||||+.+.+...
T Consensus        22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            33466788988877   6677777666678899999999999999999999764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.01  E-value=1.1e-05  Score=68.55  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=41.7

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|++..++.+.+++.......+.++|+.|+|||++|+.+.+..
T Consensus        15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            356789999999999998877666669999999999999999999875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.95  E-value=1.6e-05  Score=67.98  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHH
Q 045699          147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRI  217 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~  217 (266)
                      ...+++|++..+..+..++.     ......+.|+|+.|+|||+||+.+++...     ....+++.+......++
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~~~~~l   80 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIEKPGDL   80 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCCSHHHH
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccCChHHH
Confidence            35678999988888877764     23456789999999999999999998763     12344554444343333

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.94  E-value=1.5e-05  Score=67.70  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             cccchHHHHHHHHHHhC---------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          150 AFESRKSILNDALDALS---------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      .++|.+..++.|.+++.               ......+.|+|+.|+|||+||+.+.+....
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46777777766665432               234557999999999999999999887653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.94  E-value=6.8e-05  Score=64.36  Aligned_cols=48  Identities=27%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.|.+.+.            .....-+.++|+.|+|||+||+.+.+...
T Consensus        17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            5678899888888877661            11245789999999999999999998754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.93  E-value=4.7e-05  Score=66.36  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.|.+.+.            ......+.|+|+.|+|||+||+.+.+...
T Consensus        83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A           83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4568899888888877652            12456899999999999999999998753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.90  E-value=0.00013  Score=59.41  Aligned_cols=94  Identities=12%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      .-.++.|+|++|+|||||++.+........    .-..++|+.....+....+. .++.+++...          ...+.
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~  101 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT  101 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence            467999999999999999999988532111    13568888877765655443 4455554321          12233


Q ss_pred             HH---HHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          235 SE---RAMMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       235 ~~---~~~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      .+   ....+.+.+...+.-+||||++....+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~  133 (243)
T 1n0w_A          102 DHQTQLLYQASAMMVESRYALLIVDSATALYR  133 (243)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence            33   233455555533778999999887654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.90  E-value=3.6e-05  Score=65.50  Aligned_cols=48  Identities=19%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.|.+++.             -.....+.|+|+.|+|||+||+.+.+...
T Consensus        14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567888877777766542             13456799999999999999999999764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.90  E-value=9.9e-05  Score=59.17  Aligned_cols=88  Identities=19%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC------------CCCCCC-HH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL------------NICEGS-ES  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~------------~~~~~~-~~  235 (266)
                      ...++.|+|++|+|||||+..+.. .    .-..++|++....++...+.. ++..++.            ...... ..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR   92 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence            457999999999999999999988 2    124678888777666665543 3333322            111111 12


Q ss_pred             HHHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          236 ERAMMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       236 ~~~~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      .....+...+.. +.-+||||.+....+
T Consensus        93 ~~~~~~~~l~~~-~~~lliiD~~~~~l~  119 (220)
T 2cvh_A           93 RVIGSLKKTVDS-NFALVVVDSITAHYR  119 (220)
T ss_dssp             HHHHHHHHHCCT-TEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHhhc-CCCEEEEcCcHHHhh
Confidence            334444445544 578999999987654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.88  E-value=4.4e-05  Score=74.13  Aligned_cols=47  Identities=17%  Similarity=0.254  Sum_probs=41.5

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++||+.++..+++.|.......+.++|++|+||||||+.+.+..
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999876666678899999999999999999876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.88  E-value=8.2e-05  Score=64.82  Aligned_cols=48  Identities=27%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.|.+.+.            .....-+.++|+.|+|||+||+.+.+...
T Consensus        50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            5568888888777776651            11234588999999999999999999864

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.86  E-value=2.5e-05  Score=71.53  Aligned_cols=48  Identities=27%  Similarity=0.277  Sum_probs=40.9

Q ss_pred             CcccccchHHHHHHHHHHhCC-----------------CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSN-----------------PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|++..++.|.+|+..                 ...+.+.|+|+.|+||||+|+.+.+..
T Consensus        37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            466789999999999998853                 134789999999999999999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.83  E-value=0.00016  Score=69.19  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=42.4

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++||+.+++.+++.|.......+.++|+.|+|||++|+.+.+...
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~  232 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV  232 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999876777889999999999999999998753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.83  E-value=0.00014  Score=64.13  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=38.8

Q ss_pred             CcccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|.+..++.|..++.            ......+.|+|+.|+|||+||+.+.+..
T Consensus       113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            36678999999888887762            1234689999999999999999998864

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.81  E-value=8.6e-05  Score=66.69  Aligned_cols=47  Identities=26%  Similarity=0.249  Sum_probs=37.8

Q ss_pred             cccccchHHHHHHHHHHhC------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALS------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|.+..++.|.+.+.            ....+-+.++|+.|+|||+||+.+++..
T Consensus       133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            5668898888888877652            1234678999999999999999999975

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.81  E-value=8.7e-05  Score=61.36  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             CcccccchHHHHHHHHHH---hCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDA---LSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|.+..++.+.+.   +..         ....-+.|+|+.|+||||||+.+.+...
T Consensus        10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            355678877766655443   321         1234588999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.80  E-value=1.8e-05  Score=59.77  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=32.8

Q ss_pred             cccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          150 AFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +++|+...+..+.+.+.  ......|.|+|..|+|||++|+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            35677677777766553  2334567899999999999999999864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.79  E-value=7.6e-05  Score=64.21  Aligned_cols=49  Identities=29%  Similarity=0.448  Sum_probs=40.1

Q ss_pred             CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+..++.     ......+.|+|+.|+|||+||+.+.+...
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            46678999998888888774     24456789999999999999999988653

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.79  E-value=7.6e-05  Score=66.96  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             HHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          157 ILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       157 ~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+......+. ...+.|+|++|+||||||+.+++...
T Consensus       116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3344444443333 67899999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.77  E-value=9.8e-05  Score=64.22  Aligned_cols=48  Identities=15%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             cccccchHHHHHH---HHHHhCCCC--CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILND---ALDALSNPN--VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|++..++.   +.+.+....  ...+.|+|+.|+|||+||+.+.+...
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5678998887665   444444333  35899999999999999999999875

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.77  E-value=9.2e-05  Score=64.36  Aligned_cols=48  Identities=19%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             cccccchHHHHHHHHHHhCCCC-CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPN-VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|++..++.+.+++.... ...+.|+|+.|+||||+|+.+.+...
T Consensus        15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5568999999999988886443 35688999999999999999988764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.74  E-value=3.5e-05  Score=65.90  Aligned_cols=70  Identities=13%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV--SRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKK  247 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~  247 (266)
                      ..++.|+|++|+||||||..+.....     ..+.|++.  +...+.               ...+.++....+.+.+..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~~  182 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAMLQ  182 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHhh
Confidence            45678999999999999999987621     23456666  322111               013445566667777777


Q ss_pred             CCeEEEEEeCCCCC
Q 045699          248 GKKILFVLDNIWTS  261 (266)
Q Consensus       248 ~kr~LlvlDDvw~~  261 (266)
                       .+ +||+|++...
T Consensus       183 -~~-LLVIDsI~aL  194 (331)
T 2vhj_A          183 -HR-VIVIDSLKNV  194 (331)
T ss_dssp             -CS-EEEEECCTTT
T ss_pred             -CC-EEEEeccccc
Confidence             66 9999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.68  E-value=8.1e-05  Score=56.57  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      ....+.|+|+.|+|||||++.+++..... .+ ..+++....
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~   74 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS   74 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence            56789999999999999999999986532 11 255665443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.65  E-value=8.9e-05  Score=67.05  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=41.8

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|++.+++.++..+.......+.++|++|+|||++|+.+.....
T Consensus       179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999998766666778999999999999999998853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.64  E-value=0.00016  Score=62.46  Aligned_cols=48  Identities=10%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|.+..++.|..++...+...+.++|+.|+||||+|+.+.+...
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            456788888888888888766665699999999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.63  E-value=0.00036  Score=59.61  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+++|.+..+..+.+++..... .++.+.|+.|+|||++|+.+.+..
T Consensus        23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3467789999999999998875544 567777889999999999998875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00033  Score=62.55  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+=|.++|++|+|||+||+.+.+...
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            5567788877776655442    1         2356788999999999999999999865

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.62  E-value=0.0002  Score=65.10  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|.+..++.|.+++.             .....-+.|+|+.|+|||+||+.+.+..
T Consensus       203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            4568898888888777653             2345678999999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.61  E-value=0.00052  Score=55.26  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      .-.+++|+|++|+|||||++.+........    .....+|+.-...+.... +..+++.++...          ...+.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS  102 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence            457999999999999999999987533211    134577877655444443 334445443311          01111


Q ss_pred             ---HHHHHHHHHHHh-----cCCeEEEEEeCCCCC
Q 045699          235 ---SERAMMLCGQLK-----KGKKILFVLDNIWTS  261 (266)
Q Consensus       235 ---~~~~~~l~~~L~-----~~kr~LlvlDDvw~~  261 (266)
                         ......+...+.     ..+.-+||||++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~  137 (231)
T 4a74_A          103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  137 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence               112333444444     336779999987653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00027  Score=62.30  Aligned_cols=48  Identities=21%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+=+.++|++|+|||.||+.+.+...
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            5667888887777765442    1         2346688999999999999999999865

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.58  E-value=0.00042  Score=60.28  Aligned_cols=87  Identities=20%  Similarity=0.270  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~  242 (266)
                      .-.++.|+|++|+|||||+..+.......  -..++|+.....++..     .+++++...      ...+.++....+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            45799999999999999999998875422  2357788877777654     455565532      1234556666666


Q ss_pred             HHHhcCCeEEEEEeCCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~~  262 (266)
                      ..++.++.-++|+|.+-...
T Consensus       133 ~l~~~~~~dlvVIDSi~~l~  152 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAALV  152 (356)
T ss_dssp             HHHHTSCCSEEEEECTTTCC
T ss_pred             HHhhhcCCCeEEehHhhhhc
Confidence            66654356689999886543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.55  E-value=0.00012  Score=70.24  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|++.+++.+...|......-+.++|++|+|||++|+.+.+..
T Consensus       179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999876666678899999999999999999885

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00031  Score=62.62  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+=|.++|++|+|||.||+.+.+...
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            5667888888877766531    1         2356789999999999999999999865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.55  E-value=0.00032  Score=56.52  Aligned_cols=89  Identities=18%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC-------------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI-------------------  229 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-------------------  229 (266)
                      .-.++.|+|++|+|||||++.+.......  -..+.|+....  ....+...+. +++...                   
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   96 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE   96 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence            45799999999999999999998665322  12455655433  3444444332 343211                   


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCC--eEEEEEeCCCCCC
Q 045699          230 -----CEGSESERAMMLCGQLKKGK--KILFVLDNIWTSL  262 (266)
Q Consensus       230 -----~~~~~~~~~~~l~~~L~~~k--r~LlvlDDvw~~~  262 (266)
                           ...+..++...+...+...+  ..+||||.+....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~  136 (235)
T 2w0m_A           97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF  136 (235)
T ss_dssp             CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred             ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence                 11244555555555543213  3499999987543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.55  E-value=0.00028  Score=60.41  Aligned_cols=38  Identities=32%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             HHHHHHHhCCC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          158 LNDALDALSNP--NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       158 ~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+..++..+  ....+.|+|+.|+||||||+.+++...
T Consensus        23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34444444333  357899999999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.54  E-value=0.00044  Score=58.03  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC----------------eEEEEEeCCCC-------CHH-------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD----------------EVVFVEVSRTP-------DVK-------  215 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~----------------~~~wv~v~~~~-------~~~-------  215 (266)
                      .-.+++|+|++|+|||||++.+..-.....   .|+                .+.+  +.|.+       +..       
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~--v~Q~~~~~~~~~tv~e~l~~~~  110 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGI--VFQDPDNQLFSASVYQDVSFGA  110 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEE--ECSSGGGTCCSSBHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEE--EEcCcccccccCcHHHHHHHHH
Confidence            467999999999999999999976432110   010                1222  23321       111       


Q ss_pred             -----------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 -----------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 -----------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                                 +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~-~P~lLlLDEPts~LD~  176 (275)
T 3gfo_A          111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM-EPKVLILDEPTAGLDP  176 (275)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT-CCSEEEEECTTTTCCH
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence                       1223445555542      2245644443 456777777 8889999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.53  E-value=0.0002  Score=57.95  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=42.2

Q ss_pred             cccccch---HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          148 YEAFESR---KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       148 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      ..++++.   ...++.+..++.......+.|+|+.|+||||||+.+.+.....  .....|++++.
T Consensus        27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~   90 (242)
T 3bos_A           27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI   90 (242)
T ss_dssp             TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred             hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence            3455542   3556666666655567889999999999999999999886532  33456666543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00047  Score=61.40  Aligned_cols=48  Identities=25%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+=+.++|++|+|||+||+.+.+...
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5667888888777766542    1         2345689999999999999999999865

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.51  E-value=0.00055  Score=57.33  Aligned_cols=48  Identities=27%  Similarity=0.308  Sum_probs=32.5

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.|.+.+.    .         .-.+=+.++|++|+|||||++.+.+...
T Consensus         9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A            9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            4567777777776655432    1         1112299999999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.51  E-value=0.00056  Score=55.71  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||.+.+..-.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            467999999999999999999987643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.50  E-value=0.00071  Score=56.14  Aligned_cols=94  Identities=19%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-------------eEEEEEeCCCC------CHHH---------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-------------EVVFVEVSRTP------DVKR---------  216 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-------------~~~wv~v~~~~------~~~~---------  216 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+             .+.+  +.|.+      +..+         
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~--v~q~~~l~~~ltv~enl~~~~~~~  116 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY--LPEEAGAYRNMQGIEYLRFVAGFY  116 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE--ECTTCCCCTTSBHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE--EcCCCCCCCCCcHHHHHHHHHHHc
Confidence            3567999999999999999999977533210   010             1222  33321      1111         


Q ss_pred             ---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          217 ---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       217 ---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                               -..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       117 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~-~p~lllLDEPts~LD~  179 (256)
T 1vpl_A          117 ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-NPRLAILDEPTSGLDV  179 (256)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-CCSEEEEESTTTTCCH
T ss_pred             CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCccccCH
Confidence                     123445555542      2245644433 345667776 7889999999988764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.50  E-value=0.00068  Score=59.44  Aligned_cols=94  Identities=22%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CH------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DV------------  214 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~------------  214 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+            .+.  .|.|.+      +.            
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig--~VfQ~~~l~p~ltV~eni~~~~~~~~  104 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG--MVFQSYALYPHLSVAENMSFGLKLAG  104 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEE--EECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEE--EEecCCcCCCCCCHHHHHHHHHHHcC
Confidence            3467999999999999999999977543210   010            112  223322      11            


Q ss_pred             ------HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          215 ------KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       215 ------~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            .+-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       105 ~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~-~P~lLLLDEPts~LD~  166 (381)
T 3rlf_A          105 AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA-EPSVFLLDEPLSNLDA  166 (381)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH-CCSEEEEESTTTTSCH
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc-CCCEEEEECCCcCCCH
Confidence                  12233455555552      2345644433 346666666 7779999999988763

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00073  Score=60.48  Aligned_cols=48  Identities=23%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             cccccchHHHHHHHHHHhC-------------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS-------------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.             -...+=|.++|++|+|||+||+.+.+...
T Consensus       208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            4567788888777765431             13467788999999999999999999865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.49  E-value=0.00046  Score=56.59  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||++.+..-.+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3567999999999999999999987643

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.49  E-value=3.6e-05  Score=57.97  Aligned_cols=45  Identities=11%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             cccchHHHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          150 AFESRKSILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +++|+...+..+.+.+..  .....|.|+|..|+|||++|+.+++..
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            356666666666655431  234557899999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.48  E-value=0.00089  Score=57.94  Aligned_cols=92  Identities=20%  Similarity=0.330  Sum_probs=60.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~  233 (266)
                      ....++.|+|..|+||||||..+........    .-..++|++....+++..+. .++..++...          ...+
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~  198 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT  198 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence            3467999999999999999999987643211    23468899998888877654 4455554421          1111


Q ss_pred             ---HHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          234 ---ESERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       234 ---~~~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                         ..++...+...+..  ++--+||+|.+..
T Consensus       199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence               22344445555653  3777999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.48  E-value=0.00041  Score=62.71  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=34.6

Q ss_pred             cccccchHHHHHHHHHH---hCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDA---LSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.+.+.   +...         -.+-+.|+|++|+|||+||+.+.+...
T Consensus        15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            55678877766655543   3221         234588999999999999999999764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.47  E-value=0.00064  Score=59.04  Aligned_cols=86  Identities=19%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      .-.++.|+|.+|+||||||..+......  .-..++|++....++..     .+..++....      ..+.++....+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~  132 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD  132 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence            4679999999999999999999876542  22467899888777653     2455654321      224555555555


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...+.++.-+||+|.+...
T Consensus       133 ~l~~~~~~~lIVIDsl~~l  151 (349)
T 2zr9_A          133 MLVRSGALDIIVIDSVAAL  151 (349)
T ss_dssp             HHHTTTCCSEEEEECGGGC
T ss_pred             HHHhcCCCCEEEEcChHhh
Confidence            4444435669999987654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.47  E-value=0.00013  Score=61.93  Aligned_cols=46  Identities=22%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             cccchHHHHHHHHHHhCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.+..++.+...+..         .....+.++|+.|+|||++|+.+.+...
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            356666666666555431         1235899999999999999999999764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.47  E-value=0.00065  Score=59.10  Aligned_cols=94  Identities=17%  Similarity=0.213  Sum_probs=57.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe----------------EEEEEeCCCC------C---------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE----------------VVFVEVSRTP------D---------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~----------------~~wv~v~~~~------~---------  213 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+.                +.+  |.|.+      +         
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~--vfQ~~~l~p~ltV~eni~~~l  105 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGY--LVQEGVLFPHLTVYRNIAYGL  105 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEE--ECTTCCCCTTSCHHHHHHTTS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEE--EeCCCcCCCCCCHHHHHHHHH
Confidence            3467999999999999999999987533210   0111                122  22221      1         


Q ss_pred             ---------HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 ---------VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 ---------~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                               ..+-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       106 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~-~P~lLLLDEPts~LD~  171 (359)
T 3fvq_A          106 GNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAP-DPELILLDEPFSALDE  171 (359)
T ss_dssp             TTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred             HHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence                     112234566666552      2345654443 446777777 7889999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.46  E-value=9.8e-05  Score=63.67  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|++..++.+..++.......+.++|+.|+||||+|+.+.+...
T Consensus        35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567889999999999998766555699999999999999999988753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.45  E-value=0.00096  Score=58.13  Aligned_cols=94  Identities=19%  Similarity=0.282  Sum_probs=57.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------------eEEEEEeCCCC------CHH------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------------EVVFVEVSRTP------DVK------  215 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~v~~~~------~~~------  215 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+                 .+.+  +.|.+      +..      
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~--v~Q~~~l~~~~TV~env~~~  129 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGM--IFQHFNLLSSRTVFGNVALP  129 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEE--ECSSCCCCTTSCHHHHHHHH
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEE--EeCCCccCCCCCHHHHHHHH
Confidence            4568999999999999999999977533210   010                 1222  23322      111      


Q ss_pred             ------------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 ------------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 ------------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                                  +-..++++.++..      ....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus       130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~-~P~lLLlDEPTs~LD~  196 (366)
T 3tui_C          130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS-NPKVLLCDQATSALDP  196 (366)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT-CCSEEEEESTTTTSCH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCCccCCH
Confidence                        1233455555552      2345654443 456777877 8889999999988774

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.45  E-value=0.0006  Score=56.47  Aligned_cols=93  Identities=23%  Similarity=0.359  Sum_probs=56.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-C---CCeEEEEEeCCCC------CH----------------------HH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-V---CDEVVFVEVSRTP------DV----------------------KR  216 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~---f~~~~wv~v~~~~------~~----------------------~~  216 (266)
                      .-.+++|+|++|+|||||.+.+..-.+... .   ...+.|+  .|.+      +.                      .+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v--~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~  107 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFV--PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ  107 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEE--CSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEE--cCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence            457899999999999999999987643210 0   0112222  2211      00                      12


Q ss_pred             HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          217 IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       217 ~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      -..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus       108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-~p~lllLDEPts~LD~  161 (253)
T 2nq2_C          108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS-ECKLILLDEPTSALDL  161 (253)
T ss_dssp             HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT-TCSEEEESSSSTTSCH
T ss_pred             HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence            234556666552      2245544433 345666776 7889999999988774

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.45  E-value=0.00028  Score=58.84  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ......+.|+|+.|+|||+||+.+.+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            4456789999999999999999999974

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.43  E-value=0.00012  Score=63.39  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             CcccccchHHHHHHHHHHh-CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDAL-SNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|.+..++.+.+++ .......+.|+|+.|+||||+++.+.+..
T Consensus        12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3567889999999999888 65555559999999999999999998853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.43  E-value=0.0011  Score=55.22  Aligned_cols=26  Identities=23%  Similarity=0.498  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            56799999999999999999997643

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.42  E-value=0.0013  Score=56.42  Aligned_cols=91  Identities=21%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      ...++.|+|.+|+||||||..+.........    -..++|++....++..++. .++..++...          ...+.
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~  184 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT  184 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence            4579999999999999999999876432110    2468899998888777765 4456665422          11222


Q ss_pred             H---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 S---ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 ~---~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      +   ++...+...++. .+--+||+|.+..
T Consensus       185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence            2   344455666653 3778999998754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00067  Score=60.19  Aligned_cols=48  Identities=27%  Similarity=0.378  Sum_probs=36.8

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++.|.+..++.|.+.+.    .         ...+=|.++|++|+|||.||+.+.+...
T Consensus       181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            5567788877777655431    1         2356799999999999999999999865

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.42  E-value=0.0013  Score=57.66  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             HHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CCCeEEEEEeCCCCCHHHHHHHHHHHhcC-----CCCCCC
Q 045699          161 ALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRIQGDVADQLSL-----NICEGS  233 (266)
Q Consensus       161 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~~~~i~~~~~~-----~~~~~~  233 (266)
                      .++.+. -.....++|+|+.|+|||||++.+.+....++ .+. ++++.+.+.....   .++.+.+..     ..+...
T Consensus       164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~  239 (422)
T 3ice_A          164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPA  239 (422)
T ss_dssp             HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCH
T ss_pred             eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCH
Confidence            344443 34568999999999999999999987654322 233 4467787664322   223333321     112211


Q ss_pred             HHH-----HHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          234 ESE-----RAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       234 ~~~-----~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      ...     ....+.+++.+ |+..||++||+..
T Consensus       240 ~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR  272 (422)
T 3ice_A          240 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR  272 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence            111     12223445543 5999999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.41  E-value=0.00018  Score=57.54  Aligned_cols=40  Identities=25%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          156 SILNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       156 ~~~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+.+..  ....+++|+|++|+|||||++.+.....
T Consensus         6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345566666543  4578999999999999999999988764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.40  E-value=0.00057  Score=59.33  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=58.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCC----CeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVC----DEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGS  233 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~  233 (266)
                      ..-.++.|+|++|+|||||++.+..........    ..++|+.....+....+ ..+++.++...          ...+
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~  207 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN  207 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence            356899999999999999999998875211111    24588887666544443 33555443310          0111


Q ss_pred             ---HHHHHHHHHHHHhc-----CCeEEEEEeCCCCCC
Q 045699          234 ---ESERAMMLCGQLKK-----GKKILFVLDNIWTSL  262 (266)
Q Consensus       234 ---~~~~~~~l~~~L~~-----~kr~LlvlDDvw~~~  262 (266)
                         ..++...+...+..     .+.=+||||.+....
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l  244 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF  244 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence               22334445555542     277899999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.39  E-value=0.00092  Score=59.07  Aligned_cols=94  Identities=13%  Similarity=0.128  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC----------CCCCH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKRIQGDVADQLSLNI----------CEGSE  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~----------~~~~~  234 (266)
                      .-.++.|+|++|+|||||+..+.-......    .-..++|+.....++...+ +.+++.++...          ...+.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~  255 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA  255 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence            467999999999999999997754322111    2346888888777666654 34666665421          11222


Q ss_pred             H---HHHHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          235 S---ERAMMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       235 ~---~~~~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                      .   +....+...+...+.-+||+|.+....+
T Consensus       256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~  287 (400)
T 3lda_A          256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYR  287 (400)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence            2   2333344444433677999999876543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.38  E-value=0.00083  Score=58.38  Aligned_cols=93  Identities=20%  Similarity=0.304  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK------------  215 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~------------  215 (266)
                      .-.+++|+|++|+|||||.+.+..-.....   .|+            .+.++  .|.+      +..            
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~l~~~~~  117 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV--FQNYALFQHMTVYDNVSFGLREKRV  117 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE--CGGGCCCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCC
Confidence            467999999999999999999976533110   011            12222  2221      111            


Q ss_pred             ------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 ------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 ------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~  178 (355)
T 1z47_A          118 PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP-RPQVLLFDEPFAAIDT  178 (355)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTCCSSH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence                  1233455655552      2345644433 446677776 7889999999988764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.36  E-value=0.0013  Score=56.00  Aligned_cols=86  Identities=10%  Similarity=0.099  Sum_probs=57.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHHHH-
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLCGQ-  244 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~~~-  244 (266)
                      ++-|.|+.|+|||||+-.+.........-..++|+.....++..     .+++++.+.+      ..+.++....+.+. 
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l  104 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL  104 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence            78999999999999988887765422113568899988888764     3677777432      22444441223333 


Q ss_pred             --HhcCCeEEEEEeCCCCCC
Q 045699          245 --LKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       245 --L~~~kr~LlvlDDvw~~~  262 (266)
                        ++.++.-|||+|-|-...
T Consensus       105 ~~i~~~~~~lvVIDSI~aL~  124 (333)
T 3io5_A          105 DAIERGEKVVVFIDSLGNLA  124 (333)
T ss_dssp             HTCCTTCCEEEEEECSTTCB
T ss_pred             HHhhccCceEEEEecccccc
Confidence              344477899999887653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.36  E-value=0.0011  Score=57.67  Aligned_cols=94  Identities=23%  Similarity=0.275  Sum_probs=57.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH-----------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK-----------  215 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~-----------  215 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+            .+.++  .|.+      +..           
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~  104 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV--FQNYALYPHMTVFENIAFPLRARR  104 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE--CSSCCCCTTSCHHHHHHGGGSSSC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence            3567999999999999999999977533110   010            12222  2321      111           


Q ss_pred             -------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 -------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 -------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                             +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~-~P~lLLLDEP~s~LD~  166 (359)
T 2yyz_A          105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK-QPKVLLFDEPLSNLDA  166 (359)
T ss_dssp             SHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCcccCCH
Confidence                   1234566666552      2345644443 346677776 7889999999988763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.35  E-value=0.00032  Score=59.83  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +...+..+.+++..   .....+.|+|+.|+|||+||+.+++...
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            44445555556542   1257889999999999999999999765

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.34  E-value=0.00039  Score=58.81  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+.++|++|+|||+||+.+.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346788999999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.32  E-value=0.0014  Score=57.15  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~  242 (266)
                      ...++.|.|.+|+||||||..+......  .-..++|++....++..     .+..++.+.      ...+.+++...+.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~  145 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  145 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence            4578999999999999999988776542  22478899998877654     245555532      1234556666666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ..++.++--+||+|.+-..
T Consensus       146 ~l~~~~~~~lVVIDsl~~l  164 (366)
T 1xp8_A          146 LLVRSGAIDVVVVDSVAAL  164 (366)
T ss_dssp             HHHTTTCCSEEEEECTTTC
T ss_pred             HHHhcCCCCEEEEeChHHh
Confidence            6665435569999988654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.32  E-value=0.00088  Score=55.80  Aligned_cols=92  Identities=16%  Similarity=0.188  Sum_probs=55.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------eEEEEEeCCCC----CHH--------------HH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------EVVFVEVSRTP----DVK--------------RI  217 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------~~~wv~v~~~~----~~~--------------~~  217 (266)
                      -.+++|+|++|+|||||.+.+..-. ...   .++           ...| .++|.+    +..              +-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~  107 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDL  107 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHH
Confidence            5689999999999999999997653 211   011           1221 233432    111              12


Q ss_pred             HHHHHHHhcCC-------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          218 QGDVADQLSLN-------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       218 ~~~i~~~~~~~-------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..++++.++..       ....|..+. .-.|...|-. +.=+++||+..+.+|.
T Consensus       108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~-~p~lllLDEPts~LD~  161 (263)
T 2pjz_A          108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS-QPEIVGLDEPFENVDA  161 (263)
T ss_dssp             HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT-CCSEEEEECTTTTCCH
T ss_pred             HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCccccCH
Confidence            33456666553       123454443 3446667776 7889999999998774

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.31  E-value=0.0011  Score=56.60  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=60.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhcCCC-----
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---------VC-----DEVVFVEVSRTPDVKRIQGDVADQLSLNI-----  229 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~f-----~~~~wv~v~~~~~~~~~~~~i~~~~~~~~-----  229 (266)
                      ...++.|+|.+|+||||||..+........         ..     ..++|++....++..++. .++..++.+.     
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~  175 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD  175 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence            457999999999999999999887632111         11     468899998888877766 3455665421     


Q ss_pred             -----CCCCHH---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          230 -----CEGSES---ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       230 -----~~~~~~---~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                           ...+.+   ++...+...++. .+--+||+|.+..
T Consensus       176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence                 112222   244455666654 3667999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.31  E-value=0.0011  Score=57.92  Aligned_cols=95  Identities=23%  Similarity=0.298  Sum_probs=56.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEE----------------EEEeCCCC------CHH--------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVV----------------FVEVSRTP------DVK--------  215 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~----------------wv~v~~~~------~~~--------  215 (266)
                      .-.+++|+|++|+|||||.+.+..-.....   .|+..-                .-.|.|.+      +..        
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~  107 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence            457899999999999999999986543210   111110                01223322      111        


Q ss_pred             ----------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 ----------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 ----------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                                +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~  172 (372)
T 1g29_1          108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR-KPQVFLMDEPLSNLDA  172 (372)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-CCSEEEEECTTTTSCH
T ss_pred             HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEECCCCccCCH
Confidence                      1223455555542      2345644443 346677776 7889999999988764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.31  E-value=0.0012  Score=57.54  Aligned_cols=94  Identities=23%  Similarity=0.277  Sum_probs=56.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CHH-----------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DVK-----------  215 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~~-----------  215 (266)
                      ..-.+++|+|++|+|||||.+.+..-.....   .|+            .+.+  |.|.+      +..           
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~--v~Q~~~l~~~ltv~eni~~~~~~~~  104 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL--VFQNWALYPHMTVYKNIAFPLELRK  104 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE--ECTTCCCCTTSCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE--EecCcccCCCCCHHHHHHHHHHhcC
Confidence            3567999999999999999999977543210   010            1222  23322      111           


Q ss_pred             -------HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 -------RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 -------~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                             +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       105 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~  166 (362)
T 2it1_A          105 APREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK-EPEVLLLDEPLSNLDA  166 (362)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESGGGGSCH
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence                   1123455555552      2245644443 446677777 7889999999887763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.30  E-value=0.00029  Score=56.09  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHhCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          154 RKSILNDALDALSN---PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       154 r~~~~~~l~~~l~~---~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |...++.|.+.+..   ....+|+|.|++|+|||||++.+.....
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            44556666666542   4568999999999999999999988653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.30  E-value=0.0011  Score=57.49  Aligned_cols=94  Identities=21%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCe------------EEEEEeCCCC------CHH-----------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDE------------VVFVEVSRTP------DVK-----------  215 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~------------~~wv~v~~~~------~~~-----------  215 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+.            +.  .|.|.+      +..           
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig--~v~Q~~~l~~~ltv~enl~~~~~~~~  101 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA--FVYQNYSLFPHMNVKKNLEFGMRMKK  101 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE--EECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE--EEecCcccCCCCCHHHHHHHHHHHcC
Confidence            3467999999999999999999987543210   0111            11  233332      111           


Q ss_pred             ----HHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          216 ----RIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       216 ----~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                          +-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       102 ~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~-~P~lLLLDEP~s~LD~  160 (348)
T 3d31_A          102 IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-NPKILLLDEPLSALDP  160 (348)
T ss_dssp             CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-CCSEEEEESSSTTSCH
T ss_pred             CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECccccCCH
Confidence                1233456666552      2245644443 456777777 7889999999988763

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.29  E-value=0.0013  Score=57.12  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      ...++.|.|.+|+||||||..+.......  -..++|++....++..     .+..++...+      ..+..++...+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~  134 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD  134 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence            45799999999999999999988765422  2468899988877654     2455554321      123445555554


Q ss_pred             HHHhcCCeEEEEEeCCCC
Q 045699          243 GQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~  260 (266)
                      ...+.++--+||+|.+-.
T Consensus       135 ~l~~~~~~~lVVIDsl~~  152 (356)
T 1u94_A          135 ALARSGAVDVIVVDSVAA  152 (356)
T ss_dssp             HHHHHTCCSEEEEECGGG
T ss_pred             HHHhccCCCEEEEcCHHH
Confidence            444432555999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.27  E-value=0.0048  Score=55.07  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..++|.++|.+|+||||++..+......
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~  126 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE  126 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999877653

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.22  E-value=0.0021  Score=57.65  Aligned_cols=89  Identities=21%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHHHH---
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSESER---  237 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~~~---  237 (266)
                      -..++|+|..|+|||||++.+..+...+ +-+.++++.+.+..+ ..++..++...-..        ..++......   
T Consensus       151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~  229 (473)
T 1sky_E          151 GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA  229 (473)
T ss_dssp             TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred             CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence            4579999999999999999998876532 335567777776643 33444444332100        1112211111   


Q ss_pred             --HHHHHHHHhc--CCeEEEEEeCCC
Q 045699          238 --AMMLCGQLKK--GKKILFVLDNIW  259 (266)
Q Consensus       238 --~~~l~~~L~~--~kr~LlvlDDvw  259 (266)
                        ...+.+++.+  |++.||++||+.
T Consensus       230 ~~~ltiAEyFrd~~G~~VLl~~D~it  255 (473)
T 1sky_E          230 LTGLTMAEYFRDEQGQDGLLFIDNIF  255 (473)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred             HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence              2245566653  699999999985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.21  E-value=0.0061  Score=52.33  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|+|++|+||||+++.+....+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4568999999999999999999987754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.21  E-value=0.001  Score=57.83  Aligned_cols=94  Identities=27%  Similarity=0.350  Sum_probs=57.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------------eEEEEEeCCCC------CH-------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------------EVVFVEVSRTP------DV-------  214 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~v~~~~------~~-------  214 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+                 .+.++  .|.+      +.       
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~  106 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMV--FQTWALYPNLTAFENIAFP  106 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEE--ETTSCCCTTSCHHHHHHGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEE--eCCCccCCCCCHHHHHHHH
Confidence            3467999999999999999999976532110   011                 12222  2221      11       


Q ss_pred             -----------HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          215 -----------KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       215 -----------~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                                 .+-..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       107 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~-~P~lLLLDEP~s~LD~  173 (353)
T 1oxx_K          107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK-DPSLLLLDEPFSNLDA  173 (353)
T ss_dssp             GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCG
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCcccCCH
Confidence                       12234566666552      2345654443 446777777 7889999999998875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.20  E-value=0.0017  Score=56.85  Aligned_cols=94  Identities=15%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC--------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP--------------------  212 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~--------------------  212 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .|+            .+.++  .|.+                    
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~eni~~~~~~~~  112 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV--FQSYAVWPHMTVYENIAFPLKIKK  112 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE--EC------CCCHHHHHHTTCC--C
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE--ecCcccCCCCCHHHHHHHHHHhcC
Confidence            3567999999999999999999976532110   000            12222  1211                    


Q ss_pred             -CHH---HHHHHHHHHhcCC------CCCCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 -DVK---RIQGDVADQLSLN------ICEGSE-SERAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 -~~~---~~~~~i~~~~~~~------~~~~~~-~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                       ...   +-..++++.++..      ....|. +...-.|...|-. +.=+|+||+..+.+|.
T Consensus       113 ~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~-~P~lLLLDEP~s~LD~  174 (372)
T 1v43_A          113 FPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-EPDVLLMDEPLSNLDA  174 (372)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCCccCCH
Confidence             111   2234566666552      123442 2233446667776 7889999999988763

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.14  E-value=0.0024  Score=54.07  Aligned_cols=27  Identities=30%  Similarity=0.290  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++++|++|+||||++..+.....
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999987765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.14  E-value=0.0017  Score=60.53  Aligned_cols=93  Identities=24%  Similarity=0.360  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC------CHHHHH--------------HHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP------DVKRIQ--------------GDVADQ  224 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~------~~~~~~--------------~~i~~~  224 (266)
                      .-.+++|+|++|+|||||++.+..-.+.. +.  +. .+.++  +|..      +..+.+              .+++..
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v--~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~  458 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK--PQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP  458 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEE--CSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEE--ecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            45799999999999999999999864322 11  22 22333  3322      222222              233444


Q ss_pred             hcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          225 LSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       225 ~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ++..      ....|..+.+ -.|...|.. +.-+|+||+..+.+|.
T Consensus       459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL~~-~p~lLlLDEPt~~LD~  504 (607)
T 3bk7_A          459 LGIIDLYDRNVEDLSGGELQRVAIAATLLR-DADIYLLDEPSAYLDV  504 (607)
T ss_dssp             HTCTTTTTSBGGGCCHHHHHHHHHHHHHTS-CCSEEEEECTTTTCCH
T ss_pred             cCCchHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCccCCCH
Confidence            4442      2345655544 346677777 8889999999998874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.11  E-value=0.00029  Score=55.19  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+++|+|++|+|||||++.+...
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4578999999999999999999775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.10  E-value=0.00072  Score=62.14  Aligned_cols=95  Identities=27%  Similarity=0.417  Sum_probs=55.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCCeEEEEEeCCCC------CHHHHH---------------HHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCDEVVFVEVSRTP------DVKRIQ---------------GDVADQ  224 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~~~~wv~v~~~~------~~~~~~---------------~~i~~~  224 (266)
                      .-.+++|+|++|+|||||++.++.-.+...   .++......+++..      +..+.+               .++++.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~  372 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR  372 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH
Confidence            356899999999999999999988643221   11111111223321      222221               222222


Q ss_pred             hcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          225 LSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       225 ~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ++.      .....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus       373 ~~l~~~~~~~~~~LSGGq~QRv~iAraL~~-~p~lLlLDEPT~gLD~  418 (538)
T 3ozx_A          373 LNLHRLLESNVNDLSGGELQKLYIAATLAK-EADLYVLDQPSSYLDV  418 (538)
T ss_dssp             TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred             cCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCccCCCH
Confidence            222      12345654443 446777777 8889999999998774

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.10  E-value=0.00034  Score=55.40  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|+|++|+|||||++.+....
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.10  E-value=0.00034  Score=60.28  Aligned_cols=48  Identities=29%  Similarity=0.435  Sum_probs=36.0

Q ss_pred             cccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|.+..++.+...+.     ......+.++|++|+||||||+.+.+...
T Consensus        24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~   76 (334)
T 1in4_A           24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   76 (334)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456777766666655443     23457899999999999999999999763

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.07  E-value=0.00033  Score=54.79  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|+|++|+|||||++.+.....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.06  E-value=0.00035  Score=54.57  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|+|++|+|||||++.+....
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998764

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.05  E-value=0.0041  Score=55.78  Aligned_cols=99  Identities=21%  Similarity=0.339  Sum_probs=64.9

Q ss_pred             HHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC----------
Q 045699          161 ALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN----------  228 (266)
Q Consensus       161 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~----------  228 (266)
                      .++.|.. .+-..++|+|..|+|||+|++.+.+.... .+-+.++++-+.+... ..++.+++...-...          
T Consensus       143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv  221 (482)
T 2ck3_D          143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL  221 (482)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred             EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence            3444432 45689999999999999999999887531 3457788888887653 456666776542221          


Q ss_pred             ---CCCCC-HH-----HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          229 ---ICEGS-ES-----ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       229 ---~~~~~-~~-----~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                         ..+.+ ..     .....+.+++++  |+..||++||+..
T Consensus       222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR  264 (482)
T 2ck3_D          222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  264 (482)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence               11112 11     223445667765  6999999999853

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.04  E-value=0.0076  Score=50.98  Aligned_cols=26  Identities=46%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++++|.+|+||||++..+.....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999987754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.04  E-value=0.00029  Score=54.60  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~  191 (266)
                      ...+++|+|++|+|||||++.++
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc
Confidence            45789999999999999999644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.04  E-value=0.0014  Score=60.18  Aligned_cols=93  Identities=25%  Similarity=0.378  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC--CC-eEEEEEeCCCC------CHHHHHHH--------------HHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV--CD-EVVFVEVSRTP------DVKRIQGD--------------VADQ  224 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~--f~-~~~wv~v~~~~------~~~~~~~~--------------i~~~  224 (266)
                      .-.+++|+|++|+|||||++.++.-.+.. +.  +. .+.+  ++|..      +..+++..              ++..
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~--v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~  388 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY--KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP  388 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEE--ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEE--EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence            45799999999999999999999865422 11  22 1233  33322      23333221              1112


Q ss_pred             hcC------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          225 LSL------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       225 ~~~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ++.      .....|..+.+ -.|...|.. +.-+|+||+..+.+|.
T Consensus       389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL~~-~p~lLlLDEPt~~LD~  434 (538)
T 1yqt_A          389 LGIIDLYDREVNELSGGELQRVAIAATLLR-DADIYLLDEPSAYLDV  434 (538)
T ss_dssp             TTCGGGTTSBGGGCCHHHHHHHHHHHHHTS-CCSEEEEECTTTTCCH
T ss_pred             cCChhhhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCcccCCH
Confidence            222      12245654443 456677777 8889999999998874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.04  E-value=0.0079  Score=53.46  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++.++|++|+||||++..+.....
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999988765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.02  E-value=0.00047  Score=54.69  Aligned_cols=27  Identities=37%  Similarity=0.485  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+|+|+|+.|+|||||++.+....
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456899999999999999999998765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.01  E-value=0.0012  Score=55.08  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|+|++|+|||||++.+.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            89999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.01  E-value=0.00044  Score=55.18  Aligned_cols=27  Identities=37%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|+.|+|||||++.+.....
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457999999999999999999988644

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.99  E-value=0.00048  Score=55.01  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            346799999999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.98  E-value=0.0004  Score=53.48  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|+|+|+.|+|||||++.+.....
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.98  E-value=0.003  Score=58.04  Aligned_cols=95  Identities=21%  Similarity=0.307  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-------------CC--------------eEEEEEeCCCC--------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-------------CD--------------EVVFVEVSRTP--------  212 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-------------f~--------------~~~wv~v~~~~--------  212 (266)
                      .-.+++|+|++|+|||||.+.+..-.+.. +.             |.              ........+..        
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK  103 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc
Confidence            46799999999999999999997643211 00             00              00011111111        


Q ss_pred             -CHHH---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 -DVKR---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 -~~~~---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                       +..+         ...++++.++..      ....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus       104 ~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~-~p~illlDEPts~LD~  171 (538)
T 3ozx_A          104 GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR-EADVYIFDQPSSYLDV  171 (538)
T ss_dssp             SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred             CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCcccCCH
Confidence             1111         234566666652      2345654443 456777777 8889999999998774

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.97  E-value=0.00041  Score=53.13  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+|.|.|+.|+||||+|+.+ ..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HH
Confidence            47999999999999999999 44

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.97  E-value=0.0052  Score=52.23  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH--HHHHHHHHHhcCCC----CCCCHHHH-HHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK--RIQGDVADQLSLNI----CEGSESER-AMML  241 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~--~~~~~i~~~~~~~~----~~~~~~~~-~~~l  241 (266)
                      ...++.|+|++|+||||++..+........  ..+.++... .+...  +-+...++..+.+.    ...+...+ ...+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al  179 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV  179 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence            457999999999999999999988765321  233344332 22221  22233444544421    11222222 2234


Q ss_pred             HHHHhcCCeEEEEEeCC
Q 045699          242 CGQLKKGKKILFVLDNI  258 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDv  258 (266)
                      ...+.. +.-+|++|..
T Consensus       180 ~~a~~~-~~dvvIiDtp  195 (306)
T 1vma_A          180 AHALAR-NKDVVIIDTA  195 (306)
T ss_dssp             HHHHHT-TCSEEEEEEC
T ss_pred             HHHHhc-CCCEEEEECC
Confidence            444554 4447777855

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.97  E-value=0.00056  Score=52.44  Aligned_cols=27  Identities=30%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|+.|+|||||++.+..-.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            456799999999999999999998875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.95  E-value=0.00061  Score=54.03  Aligned_cols=29  Identities=31%  Similarity=0.321  Sum_probs=25.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....+|.|+|++|+|||||++.+.....
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999988764

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=96.95  E-value=0.0039  Score=56.13  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=63.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC--------------CCCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN--------------ICEG  232 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~--------------~~~~  232 (266)
                      .+-..++|+|..|+|||+|++.+.++... .+-+.++++-+.+... ..++.+++...-...              ..+.
T Consensus       163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~  241 (498)
T 1fx0_B          163 RRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE  241 (498)
T ss_dssp             CTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred             ccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence            45688999999999999999999887532 3557889998887654 456666666532111              1111


Q ss_pred             C------HHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          233 S------ESERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       233 ~------~~~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                      +      .......+.+++++  |+..||++||+..
T Consensus       242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            1      11234456778876  7999999999853

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.94  E-value=0.0019  Score=61.92  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+-|.++|+.|+|||+||+.+.+...
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.0035  Score=58.34  Aligned_cols=91  Identities=23%  Similarity=0.284  Sum_probs=56.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccC--C-C-eEEEEEeCCCC------CH--------------HHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKV--C-D-EVVFVEVSRTP------DV--------------KRIQGDVADQLS  226 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f-~-~~~wv~v~~~~------~~--------------~~~~~~i~~~~~  226 (266)
                      .+++|+|++|+|||||++.+..-.+...-  . . ...++  +|..      +.              .....++++.++
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~--~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~  456 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMK--PQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR  456 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEE--CSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEe--cccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcC
Confidence            67999999999999999999886432211  0 0 12222  2211      11              122334555555


Q ss_pred             C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          227 L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       227 ~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .      .....|..+.+ -.|...|.. +.=+|+||+..+.+|.
T Consensus       457 l~~~~~~~~~~LSGGqkQRv~iAraL~~-~p~lLlLDEPT~gLD~  500 (608)
T 3j16_B          457 IDDIIDQEVQHLSGGELQRVAIVLALGI-PADIYLIDEPSAYLDS  500 (608)
T ss_dssp             STTTSSSBSSSCCHHHHHHHHHHHHTTS-CCSEEEECCTTTTCCH
T ss_pred             ChhhhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCCCCCH
Confidence            4      22356655544 456777887 8889999999988774

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.94  E-value=0.0054  Score=49.68  Aligned_cols=47  Identities=19%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQG  219 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~  219 (266)
                      .-.++.|.|++|+|||||+..+......  .-..++|++....  ..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~~--~~~~~~   68 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEEH--PVQVRQ   68 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSSC--HHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccCC--HHHHHH
Confidence            4579999999999999998877655431  2245677765543  344443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.94  E-value=0.00045  Score=54.88  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++++|+|++|+|||||++.+....
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.93  E-value=0.0052  Score=57.22  Aligned_cols=27  Identities=41%  Similarity=0.649  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356799999999999999999997653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.00065  Score=53.85  Aligned_cols=26  Identities=38%  Similarity=0.370  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|+.|+||||+++.+....
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45799999999999999999998765

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.92  E-value=0.00054  Score=53.70  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+++|+|++|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999975

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.91  E-value=0.0008  Score=56.72  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=36.4

Q ss_pred             ccccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++|.+..++.+...+..              .....+.++|+.|+|||++|+.+.+...
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3478888888777765532              2356788999999999999999998763

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.90  E-value=0.0036  Score=57.59  Aligned_cols=46  Identities=24%  Similarity=0.370  Sum_probs=33.7

Q ss_pred             cccchHHHHHHHHHHh-----C-CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDAL-----S-NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l-----~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|.+..++.+.+.+     . .....++.++|++|+||||||+.+.....
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3566666655554332     1 23467899999999999999999999764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.90  E-value=0.00062  Score=52.16  Aligned_cols=24  Identities=25%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+|.|.|+.|+||||+++.+....
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.88  E-value=0.00072  Score=53.54  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|+|+.|+||||+++.+....
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.86  E-value=0.00075  Score=53.96  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|+|++|+|||||++.+....
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            46789999999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.86  E-value=0.00063  Score=54.92  Aligned_cols=26  Identities=35%  Similarity=0.621  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|+|++|+|||||++.+....
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999998754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.85  E-value=0.014  Score=52.12  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|.+|+||||++..+.....
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            468999999999999999998887655

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.85  E-value=0.00072  Score=57.75  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|+|++|+|||||++.+..-..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            4568999999999999999999988765

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.84  E-value=0.00093  Score=51.57  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++|+|+.|+||||+++.+....
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.83  E-value=0.00076  Score=52.13  Aligned_cols=24  Identities=21%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+|.|.|+.|+||||+++.+....
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999998864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.83  E-value=0.0007  Score=55.60  Aligned_cols=93  Identities=25%  Similarity=0.331  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC------------eEEEEEeCCCC------CH------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD------------EVVFVEVSRTP------DV------------  214 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~------------~~~wv~v~~~~------~~------------  214 (266)
                      .. .+++|+|++|+|||||.+.+..-.+...   .|+            .+.|  +.|.+      +.            
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~--v~q~~~l~~~ltv~enl~~~~~~~~   99 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF--VPQDYALFPHLSVYRNIAYGLRNVE   99 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBC--CCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEE--EcCCCccCCCCcHHHHHHHHHHHcC
Confidence            46 8999999999999999999977532110   000            0111  22211      11            


Q ss_pred             ----HHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          215 ----KRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       215 ----~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                          .+-..++++.++..      ....|..+.+ -.+...|-. +.=+++||+..+..|.
T Consensus       100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-~p~lllLDEPts~LD~  159 (240)
T 2onk_A          100 RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI-QPRLLLLDEPLSAVDL  159 (240)
T ss_dssp             HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-CCSSBEEESTTSSCCH
T ss_pred             CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcccCCH
Confidence                11233455555542      1235544433 346667776 7889999999988764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.82  E-value=0.0016  Score=54.93  Aligned_cols=28  Identities=18%  Similarity=0.118  Sum_probs=24.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|+|+|+.|+|||||++.+.....
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4568999999999999999999987754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.82  E-value=0.0041  Score=56.50  Aligned_cols=48  Identities=27%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             cccccchHHHHHHHHHH---hCCC---------CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDA---LSNP---------NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..+..+.+.   +...         -.+-+.|+|++|+||||||+.+.+...
T Consensus        30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            55678877666555443   3221         123489999999999999999998754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.81  E-value=0.00074  Score=55.24  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356799999999999999999997653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.81  E-value=0.00084  Score=55.07  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+|+|.|++|+|||||++.+....
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.81  E-value=0.0014  Score=54.29  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             ccccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+++|....+..+.+.+.  ......+.|+|..|+|||+||+.+++...
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            456777666666655442  12346788999999999999999998653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.79  E-value=0.00077  Score=53.42  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|.|+.|+||||+|+.+....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.77  E-value=0.00071  Score=54.92  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45799999999999999999997653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.77  E-value=0.017  Score=49.22  Aligned_cols=52  Identities=13%  Similarity=0.068  Sum_probs=37.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      ....++.|.|.+|+||||||..+......++  ..++|++..  .+..++...++.
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~  117 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV  117 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence            3467899999999999999999987654332  577787766  345555555543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.77  E-value=0.00092  Score=54.08  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|++|+|||||.+.+.....
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            467999999999999999999988753

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.77  E-value=0.0032  Score=55.09  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             HHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCC-HH
Q 045699          160 DALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD-EVVFVEVSRTPDVK-RIQGDVADQLSLNICEGS-ES  235 (266)
Q Consensus       160 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~~~~~~-~~~~~i~~~~~~~~~~~~-~~  235 (266)
                      +.++.+.. ..-..++|+|..|+|||+|++.+.+....+ +-+ .++++.+.+..... ++.+++...+-....+.+ ..
T Consensus       164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~  242 (427)
T 3l0o_A          164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDK  242 (427)
T ss_dssp             HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHH
T ss_pred             hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHH
Confidence            34555543 456899999999999999999998875432 223 23567777653211 111111100000111112 11


Q ss_pred             -----HHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          236 -----ERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       236 -----~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                           .....+.+++.+ |+..||++||+.
T Consensus       243 r~~~a~~altiAEyfrd~G~dVLil~DslT  272 (427)
T 3l0o_A          243 QVKVAELTLEMAKRLVEFNYDVVILLDSLT  272 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEecccch
Confidence                 122234555543 599999999975

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.76  E-value=0.0018  Score=56.09  Aligned_cols=43  Identities=26%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             chHHHHHHHHHHh----CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          153 SRKSILNDALDAL----SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       153 gr~~~~~~l~~~l----~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.+..++.+++.+    .......|.|+|+.|+||||+++.+.....
T Consensus         3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3445555555554    244566799999999999999999987654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.76  E-value=0.00085  Score=53.18  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+|+|.|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.75  E-value=0.00088  Score=54.93  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|+|+|++|+|||||++.+....
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35799999999999999999998554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.74  E-value=0.015  Score=51.79  Aligned_cols=27  Identities=41%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|++|+||||++..+.....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999987665

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.74  E-value=0.0062  Score=59.48  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC---eEEEEEeCCCC-------CH-----------HHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD---EVVFVEVSRTP-------DV-----------KRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~---~~~wv~v~~~~-------~~-----------~~~~~~i~~~~~~  227 (266)
                      ...+++|+|++|+|||||++.+..- .+. .++   ..-.+.+.+..       +.           ..-..+++..++.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL  537 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF  537 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence            4578999999999999999999842 111 111   00112333321       11           1223456666665


Q ss_pred             C-------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          228 N-------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       228 ~-------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      .       ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~-~P~lLLLDEPTs~LD~  581 (986)
T 2iw3_A          538 TDEMIAMPISALSGGWKMKLALARAVLR-NADILLLDEPTNHLDT  581 (986)
T ss_dssp             CHHHHHSBGGGCCHHHHHHHHHHHHHHT-TCSEEEEESTTTTCCH
T ss_pred             ChhhhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEECCccCCCH
Confidence            2       2355654443 446667776 7889999999998874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.72  E-value=0.00092  Score=52.81  Aligned_cols=25  Identities=36%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+++|+|++|+|||||++.+....+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999988653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.72  E-value=0.00098  Score=51.43  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+|.|.|+.|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999987

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.71  E-value=0.00095  Score=53.74  Aligned_cols=25  Identities=36%  Similarity=0.505  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|+|+|+.|+||||+++.+....
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999997754

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.71  E-value=0.0011  Score=51.54  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...|.|+|+.|+||||+++.+.....
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999987653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.70  E-value=0.0062  Score=63.50  Aligned_cols=85  Identities=20%  Similarity=0.264  Sum_probs=60.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l  241 (266)
                      ...+.+-|+|+.|+|||+||..+......  .=..++|+.+...+++..     +..++.+.+      ..+.++....+
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence            35789999999999999999999887652  234678888888776665     556664321      12334555566


Q ss_pred             HHHHhcCCeEEEEEeCCC
Q 045699          242 CGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw  259 (266)
                      ....++.+--+||+|++.
T Consensus      1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHHTCCSEEEESCGG
T ss_pred             HHHHhcCCCCEEEEcChh
Confidence            656555477899999985

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.70  E-value=0.00098  Score=55.46  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999997653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.70  E-value=0.0045  Score=49.47  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|.|.|++|+||+|.|+.+.....
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            678999999999999999998754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.68  E-value=0.0076  Score=51.19  Aligned_cols=70  Identities=11%  Similarity=0.014  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc-cc-cCCCeEEEEEeCC-CCCHHHHHHHHHHHhc
Q 045699          155 KSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK-KL-KVCDEVVFVEVSR-TPDVKRIQGDVADQLS  226 (266)
Q Consensus       155 ~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~  226 (266)
                      +..++.|.+.+..++.....++|+.|+||||+|+.+.+... .. .+.+. .++..+. ...... .+++.+.+.
T Consensus         3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~   75 (305)
T 2gno_A            3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN   75 (305)
T ss_dssp             -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence            34456666666655577899999999999999999987521 11 23333 4454443 334333 455666553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.67  E-value=0.0011  Score=52.64  Aligned_cols=26  Identities=35%  Similarity=0.589  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|+.|+|||||++.+....
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35789999999999999999998765

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.67  E-value=0.0013  Score=56.02  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|++|+|||||++.+..-.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            467999999999999999999987654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.66  E-value=0.001  Score=54.93  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.+++|+|++|+|||||++.+..-
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999884

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.65  E-value=0.00076  Score=54.13  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.+++|+|++|+|||||++.+..-
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.65  E-value=0.0012  Score=52.58  Aligned_cols=26  Identities=42%  Similarity=0.538  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|+|+|+.|+||||+++.+....
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999998753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.65  E-value=0.00098  Score=55.26  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45799999999999999999996643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.64  E-value=0.001  Score=54.61  Aligned_cols=93  Identities=19%  Similarity=0.220  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---------------eEEEEEeCCCC------C-----------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---------------EVVFVEVSRTP------D-----------  213 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---------------~~~wv~v~~~~------~-----------  213 (266)
                      .-.+++|+|++|+|||||.+.+..-.+...   .|+               .+.++  .|.+      +           
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v--~q~~~l~~~ltv~enl~~~~~~  108 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV--PEGRRIFPELTVYENLMMGAYN  108 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE--CSSCCCCTTSBHHHHHHGGGTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE--ecCCccCCCCcHHHHHHHhhhc
Confidence            467999999999999999999976532110   000               12233  2211      1           


Q ss_pred             ------HHHHHHHHHHHhc-C------CCCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 ------VKRIQGDVADQLS-L------NICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 ------~~~~~~~i~~~~~-~------~~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            ..+...++++.++ .      .....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus       109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-~p~lllLDEPts~LD~  172 (240)
T 1ji0_A          109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS-RPKLLMMDEPSLGLAP  172 (240)
T ss_dssp             CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT-CCSEEEEECTTTTCCH
T ss_pred             CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCCcccCCH
Confidence                  1123344555553 3      22345644433 346667776 7889999999988774

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.64  E-value=0.0012  Score=55.01  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.+++|+|++|+|||||++.+..-
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35679999999999999999999885

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.64  E-value=0.0012  Score=55.05  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            356799999999999999999997653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.64  E-value=0.0013  Score=51.79  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|+.|+||||+++.+.....
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.64  E-value=0.013  Score=53.05  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|.+|+|||||++.+....+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            457999999999999999999987654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.63  E-value=0.0019  Score=51.79  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.+...+.......|.|+|.+|+|||||+..+....
T Consensus        27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344444444567899999999999999999998764

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.63  E-value=0.00078  Score=55.82  Aligned_cols=25  Identities=44%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-+.|+|+.|+|||+||+.+++...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhC
Confidence            3477999999999999999999764

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.62  E-value=0.002  Score=61.67  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=40.8

Q ss_pred             ccccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 045699          149 EAFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~  210 (266)
                      ..++|.+..++.+...+.       .  .....+.++|+.|+|||++|+.+.+...  ..-...+.+.++.
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~  559 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSE  559 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGG
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechh
Confidence            347788887777766653       1  1223799999999999999999999863  1223344555543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.62  E-value=0.0011  Score=52.69  Aligned_cols=22  Identities=45%  Similarity=0.682  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+|+|.|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999965

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.62  E-value=0.0013  Score=51.26  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|.|+.|+||||+++.+.....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999988765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.62  E-value=0.00096  Score=53.80  Aligned_cols=94  Identities=26%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC---------eEEEEEeCCCC------CHH---------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD---------EVVFVEVSRTP------DVK---------------  215 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~---------~~~wv~v~~~~------~~~---------------  215 (266)
                      .-.+++|+|++|+|||||++.+..-.+...   .|+         .+.|  +.|.+      +..               
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~--v~q~~~~~~~~tv~enl~~~~~~~~~~~~  111 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF--LPEEIIVPRKISVEDYLKAVASLYGVKVN  111 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE--ECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE--EeCCCcCCCCCCHHHHHHHHHHhcCCchH
Confidence            457899999999999999999977543210   011         1223  33321      111               


Q ss_pred             -HHHHHHHHHhcCCC-----CCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          216 -RIQGDVADQLSLNI-----CEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       216 -~~~~~i~~~~~~~~-----~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                       +-..++++.++...     ...|..+. .-.+...|-. ++=+++||++.+..|..
T Consensus       112 ~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~-~p~lllLDEPts~LD~~  167 (214)
T 1sgw_A          112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV-NAEIYVLDDPVVAIDED  167 (214)
T ss_dssp             HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTS-CCSEEEEESTTTTSCTT
T ss_pred             HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCcCCCHH
Confidence             12234555555421     13454333 3446667776 78899999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.62  E-value=0.0015  Score=53.88  Aligned_cols=25  Identities=36%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+|+|+|+.|+||||+++.+...
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4579999999999999999999844

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.61  E-value=0.0013  Score=50.94  Aligned_cols=26  Identities=38%  Similarity=0.524  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+++.+.....
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999987653

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.61  E-value=0.006  Score=54.47  Aligned_cols=92  Identities=18%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CCC-eEEEEEeCCCC-CHHHHHHHHHHHhcC-------CCCCCC-HH--
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VCD-EVVFVEVSRTP-DVKRIQGDVADQLSL-------NICEGS-ES--  235 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~-~~~wv~v~~~~-~~~~~~~~i~~~~~~-------~~~~~~-~~--  235 (266)
                      +-..++|+|..|+|||+|+.++.+...... +-+ .++++-+.+.. ...++.+++...-..       ...+.+ ..  
T Consensus       150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~  229 (465)
T 3vr4_D          150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI  229 (465)
T ss_dssp             TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred             cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence            456789999999999999999998765311 111 67788887654 344566655443111       111222 11  


Q ss_pred             ---HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          236 ---ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       236 ---~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                         .....+.+++++  |+..||++||+..
T Consensus       230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr  259 (465)
T 3vr4_D          230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN  259 (465)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence               123456778873  6999999999753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.60  E-value=0.012  Score=50.59  Aligned_cols=41  Identities=7%  Similarity=0.109  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          155 KSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       155 ~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +...+.+.+.+..+++ ..+.++|+.|+||||+|+.+.....
T Consensus         8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A            8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            4456667776665554 5699999999999999999988754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.60  E-value=0.0016  Score=50.83  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|.|+.|+||||+++.+....
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998765

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.60  E-value=0.0017  Score=50.59  Aligned_cols=27  Identities=37%  Similarity=0.430  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.|.|+.|+||||+++.+.....
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.59  E-value=0.0015  Score=49.98  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+|+|.|+.|+||||+++.+.....
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence            568999999999999999999988754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.59  E-value=0.0016  Score=51.78  Aligned_cols=26  Identities=19%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+++.|+|+.|+|||||++.+....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            46799999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0015  Score=50.87  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|.|+.|+||||+++.+.....
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999988654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.58  E-value=0.0014  Score=54.08  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|+|+.|+||||||+.+.....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4789999999999999999987653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.58  E-value=0.0014  Score=50.69  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..|.|.|+.|+||||+|+.+.....
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999988754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.57  E-value=0.0016  Score=51.33  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+..+|+|.|+.|+||||+++.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            45679999999999999999999774

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.57  E-value=0.021  Score=48.10  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|.+|+||||++..+.....
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999988765

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.57  E-value=0.00092  Score=54.23  Aligned_cols=86  Identities=8%  Similarity=-0.062  Sum_probs=46.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICE---GSESERAMMLCGQL  245 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~l~~~L  245 (266)
                      ...++.|.|..|+||||++..+.+.....  -..++.+.-....  . -...|++.++.....   .+..++...+.+.+
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~   85 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS   85 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence            45789999999999999888877765422  2233334323221  1 112344445443221   12233444444444


Q ss_pred             hcCCeEEEEEeCCC
Q 045699          246 KKGKKILFVLDNIW  259 (266)
Q Consensus       246 ~~~kr~LlvlDDvw  259 (266)
                      .+++.-+|++|++-
T Consensus        86 ~~~~~dvViIDEaQ   99 (223)
T 2b8t_A           86 FNDETKVIGIDEVQ   99 (223)
T ss_dssp             SCTTCCEEEECSGG
T ss_pred             hCCCCCEEEEecCc
Confidence            44133388899874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.56  E-value=0.0012  Score=54.35  Aligned_cols=26  Identities=38%  Similarity=0.599  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||++.+..-.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999999997653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0015  Score=55.50  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|++|+||||+++.+....+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999987654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.56  E-value=0.00092  Score=54.23  Aligned_cols=25  Identities=32%  Similarity=0.321  Sum_probs=17.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH-HH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVC-DQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~-~~  193 (266)
                      ...+++|+|++|+|||||++.+. ..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999998 54

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.55  E-value=0.0021  Score=50.20  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|+.|+||||+++.+...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999999886

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.55  E-value=0.0015  Score=55.51  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|+|+|++|+|||||++.+.....
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567999999999999999999988653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.55  E-value=0.0015  Score=53.73  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356799999999999999999997653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.54  E-value=0.0016  Score=52.06  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          156 SILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       156 ~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+.+...+......+|.|+|.+|+|||||+..+....
T Consensus        16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            334444444444567899999999999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.53  E-value=0.0013  Score=54.27  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45789999999999999999997653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.53  E-value=0.0015  Score=54.20  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            356799999999999999999997653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.52  E-value=0.0013  Score=55.22  Aligned_cols=26  Identities=38%  Similarity=0.420  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.+++|+|++|+|||||.+.+..-.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            56799999999999999999997653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.52  E-value=0.0016  Score=54.32  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=56.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------eEEEEEeCCCC-------CH------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------EVVFVEVSRTP-------DV------------  214 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------~~~wv~v~~~~-------~~------------  214 (266)
                      ..-.+++|+|++|+|||||++.+..-.+...   .++           .+.+  +.|.+       +.            
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~--v~q~~~~~~~~~tv~enl~~~~~~~~  108 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI--AFQYPEDQFFAERVFDEVAFAVKNFY  108 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEE--ECSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEE--EeccchhhcCCCcHHHHHHHHHHhcC
Confidence            3567999999999999999999976532110   011           1222  23321       11            


Q ss_pred             -----HHHHHHHHHHhcCC--------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          215 -----KRIQGDVADQLSLN--------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       215 -----~~~~~~i~~~~~~~--------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                           .+-..++++.++..        ....|..+.+ -.|...|-. +.=+|+||+..+..|.
T Consensus       109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~-~p~lllLDEPts~LD~  171 (266)
T 2yz2_A          109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH-EPDILILDEPLVGLDR  171 (266)
T ss_dssp             TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTCCH
T ss_pred             CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCccccCCH
Confidence                 11234456665543        1234544333 345667776 7889999999988774

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.52  E-value=0.0016  Score=54.50  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456799999999999999999997653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.51  E-value=0.0012  Score=56.77  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..+..+...+.......+.|+|+.|+|||+||+.+.+...
T Consensus        23 f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           23 FSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             chhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            556888877665544433333344589999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.50  E-value=0.0019  Score=55.34  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|+|.|++|+|||||++.+..-..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456999999999999999999987654

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=96.49  E-value=0.0073  Score=53.90  Aligned_cols=93  Identities=15%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc--------cCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL--------KVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NI  229 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~  229 (266)
                      .+-..++|+|..|+|||+|+.++.+.....        ++-+ .++++-+.+... ..++.+++...-..        ..
T Consensus       145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~  224 (464)
T 3gqb_B          145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA  224 (464)
T ss_dssp             BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred             ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence            346788999999999999999998886542        1222 677788876543 44555554432101        11


Q ss_pred             CCCCHH-----HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 045699          230 CEGSES-----ERAMMLCGQLKK--GKKILFVLDNIWT  260 (266)
Q Consensus       230 ~~~~~~-----~~~~~l~~~L~~--~kr~LlvlDDvw~  260 (266)
                      +.....     .....+.+++++  |+..||++||+..
T Consensus       225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr  262 (464)
T 3gqb_B          225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN  262 (464)
T ss_dssp             TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence            222222     223456778873  6999999999753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.48  E-value=0.0022  Score=50.18  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.|.|+.|+||||+++.+.....
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999999987653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.45  E-value=0.002  Score=50.22  Aligned_cols=26  Identities=23%  Similarity=0.189  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+|+.+.....
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999987643

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.45  E-value=0.0037  Score=54.24  Aligned_cols=45  Identities=22%  Similarity=0.124  Sum_probs=34.3

Q ss_pred             ccchHHHHHHHHHHhC-------------C--CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          151 FESRKSILNDALDALS-------------N--PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++|.+..++.+...+.             .  .....+.++|+.|+|||++|+.+.+...
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            5777777777766551             1  1346789999999999999999998763

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.45  E-value=0.0022  Score=49.67  Aligned_cols=27  Identities=30%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|+.|+|||||+..+.....
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence            467999999999999999999988754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.45  E-value=0.0021  Score=49.99  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.+.|+.|+||||+++.+....
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998754

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=96.44  E-value=0.026  Score=50.97  Aligned_cols=98  Identities=14%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHH-HHHHHHHhcc----ccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC------
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTL-AKIVCDQAKK----LKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL------  227 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtL-a~~v~~~~~~----~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~------  227 (266)
                      ++.+.. .+-..++|+|..|+|||+| ...+.|....    ..+-+ .++++-+.+..+ ..++.+++...-..      
T Consensus       153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV  232 (510)
T 2ck3_A          153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV  232 (510)
T ss_dssp             HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEE
Confidence            344432 4567899999999999999 5677776542    11234 578888887654 44555555542211      


Q ss_pred             --CCCCCCHHH-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          228 --NICEGSESE-----RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       228 --~~~~~~~~~-----~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                        ..+......     ....+.+++++ |+..||++||+.
T Consensus       233 ~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt  272 (510)
T 2ck3_A          233 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS  272 (510)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence              111211211     12345666665 699999999975

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.44  E-value=0.0023  Score=50.58  Aligned_cols=27  Identities=30%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+|.|.|+.|+||||+++.+....
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999998764

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=96.44  E-value=0.024  Score=51.15  Aligned_cols=94  Identities=18%  Similarity=0.204  Sum_probs=58.5

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCC
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL-------NIC  230 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~  230 (266)
                      ++.+.. .+-..++|+|..|+|||+|| ..+.+..    +-+ .++++-+.+..+ ..++.+++...-..       ...
T Consensus       153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ata  228 (502)
T 2qe7_A          153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASA  228 (502)
T ss_dssp             HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECT
T ss_pred             cccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECC
Confidence            444432 45678999999999999994 5787764    235 457888887653 34555555542222       111


Q ss_pred             CCC-HHH-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          231 EGS-ESE-----RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       231 ~~~-~~~-----~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      +.+ ...     ....+.+++++ |+..||++||+.
T Consensus       229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt  264 (502)
T 2qe7_A          229 SEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS  264 (502)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence            222 221     12345666665 699999999975

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.44  E-value=0.0018  Score=50.96  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.|.|+|++|+|||||++.+....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            458899999999999999998763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.44  E-value=0.053  Score=49.20  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.|+|.+|+||||++..+.....
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999986554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.40  E-value=0.0019  Score=50.18  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|.|+.|+||||+|+.+.....
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999988653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.40  E-value=0.0018  Score=53.23  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|+|++|+|||||++.+.+...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0022  Score=55.75  Aligned_cols=27  Identities=37%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|++|+|||||++.+....+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence            457999999999999999999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.40  E-value=0.0012  Score=51.30  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ..+++|+|..|+|||||++.+..-...
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            368999999999999999999877553

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.39  E-value=0.002  Score=55.09  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++|++..++.+...+..  ...+.++|+.|+|||+||+.+.+...
T Consensus        27 ~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             cceeCcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3577888888877776643  24788999999999999999988653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.39  E-value=0.0019  Score=53.92  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++|+|++|+|||||.+.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.37  E-value=0.0027  Score=50.30  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+++.+.....
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999998765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.35  E-value=0.0022  Score=49.19  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|.|+.|+||||+|+.+.....
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999988653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.35  E-value=0.0024  Score=50.12  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+|+.+.....
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999988653

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=96.35  E-value=0.023  Score=51.34  Aligned_cols=88  Identities=15%  Similarity=0.206  Sum_probs=56.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCCHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGSESE  236 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~~  236 (266)
                      .+-..++|+|..|+|||+|| ..+.+..    .-+ .++++-+.+..+ ..++.+++...-..        ..+......
T Consensus       173 grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r  248 (515)
T 2r9v_A          173 GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ  248 (515)
T ss_dssp             ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred             ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence            35678999999999999995 5777764    245 467888887653 44555555542211        112211211


Q ss_pred             -----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          237 -----RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       237 -----~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                           ....+.+++++ |+..||++||+.
T Consensus       249 ~~a~~~a~tiAEyfrd~G~dVLli~DslT  277 (515)
T 2r9v_A          249 YIAPYAGCAMGEYFAYSGRDALVVYDDLS  277 (515)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence                 23345666665 699999999975

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.34  E-value=0.0026  Score=52.88  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|+|++|+|||||++.+..-..
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            4567999999999999999999977543

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.34  E-value=0.003  Score=53.64  Aligned_cols=46  Identities=15%  Similarity=0.285  Sum_probs=33.9

Q ss_pred             cccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +++|....+..+.+.+.  ......+.|+|..|+|||++|+.+++...
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            45676666666665543  23445678999999999999999998653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.33  E-value=0.013  Score=56.25  Aligned_cols=94  Identities=14%  Similarity=0.235  Sum_probs=55.9

Q ss_pred             cccccchHHHHHHHHHHhC----C---------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH
Q 045699          148 YEAFESRKSILNDALDALS----N---------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV  214 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~  214 (266)
                      ..++.|.+..++.|.+.+.    .         ...+-+.++|+.|+|||.||+.+.+....       -++.++    .
T Consensus       476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~----~  544 (806)
T 3cf2_A          476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK----G  544 (806)
T ss_dssp             STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC----H
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec----c
Confidence            4456777777777765542    1         12355789999999999999999997642       123332    2


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Q 045699          215 KRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~  261 (266)
                      .+++        ..+...+... ...+.+.-+....++|++|++..-
T Consensus       545 ~~l~--------s~~vGese~~-vr~lF~~Ar~~~P~IifiDEiDsl  582 (806)
T 3cf2_A          545 PELL--------TMWFGESEAN-VREIFDKARQAAPCVLFFDELDSI  582 (806)
T ss_dssp             HHHH--------TTTCSSCHHH-HHHHHHHHHTTCSEEEECSCGGGC
T ss_pred             chhh--------ccccchHHHH-HHHHHHHHHHcCCceeechhhhHH
Confidence            2221        1222334333 333433333227899999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.33  E-value=0.0032  Score=48.97  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+++.+.....
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987643

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.30  E-value=0.005  Score=53.65  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+.++|+.|+|||++|+.+.+..
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999876

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.30  E-value=0.0024  Score=53.90  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+..-..
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3567999999999999999999987643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.29  E-value=0.0028  Score=52.43  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|.|+.|+||||+|+.+....
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.29  E-value=0.0044  Score=55.64  Aligned_cols=48  Identities=17%  Similarity=0.174  Sum_probs=36.1

Q ss_pred             cccccchHHHHHHHHHH---hCCC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDA---LSNP--NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+++|.+..++.+..+   +...  ..+-+.++|+.|+|||+||+.+.+...
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            46788988877655443   3222  235788999999999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.28  E-value=0.003  Score=49.29  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +|+|.|+.|+||||+++.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.28  E-value=0.0014  Score=52.15  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|+|.|+.|+||||+++.+.....
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999999988754

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=96.28  E-value=0.027  Score=50.75  Aligned_cols=89  Identities=15%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCC-HHH-
Q 045699          168 PNVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSLN-------ICEGS-ESE-  236 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~~-------~~~~~-~~~-  236 (266)
                      .+-..++|+|..|+|||+|+ ..+.|..   +.-..++++-+++..+ ..++.+++...-...       ..+.+ ... 
T Consensus       160 grGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~  236 (513)
T 3oaa_A          160 GRGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY  236 (513)
T ss_dssp             BTTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred             ccCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence            45678999999999999995 6777742   2223467899987654 345555544432111       11122 111 


Q ss_pred             ----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          237 ----RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       237 ----~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                          ....+.+++++ |+..||++||+.
T Consensus       237 ~a~~~a~tiAEyfrd~G~dVLli~Dslt  264 (513)
T 3oaa_A          237 LAPYAGCAMGEYFRDRGEDALIIYDDLS  264 (513)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence                12334556654 699999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.28  E-value=0.0031  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|+.|+||||+|+.+.....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.28  E-value=0.0028  Score=53.84  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -+.-.+++|+|++|+|||||++.+..-.
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3567899999999999999999998754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.27  E-value=0.003  Score=48.88  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|.|+.|+||||+++.+....
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.26  E-value=0.0037  Score=49.33  Aligned_cols=26  Identities=27%  Similarity=0.227  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....|.|.|+.|+||||+|+.+....
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.25  E-value=0.002  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.356  Sum_probs=18.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+|+.+.....
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999987643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.23  E-value=0.0035  Score=50.28  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...|.|.|+.|+||||+++.+.....
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999988653

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.23  E-value=0.0035  Score=49.69  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE  202 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~  202 (266)
                      ..+|.|.|+.|+||||+++.+...... .+++.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~   41 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV   41 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence            568999999999999999999887542 24444

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=96.22  E-value=0.008  Score=53.85  Aligned_cols=98  Identities=18%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccC--CCeEEEEEeCCCCC-HHHHHHHHHHHhcC-------CCC
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV--CDEVVFVEVSRTPD-VKRIQGDVADQLSL-------NIC  230 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--f~~~~wv~v~~~~~-~~~~~~~i~~~~~~-------~~~  230 (266)
                      ++.+.. .+-..++|+|..|+|||+|+.++.++....+.  -+.++++-+.+... ..++.+++...-..       ...
T Consensus       143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts  222 (469)
T 2c61_A          143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA  222 (469)
T ss_dssp             HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred             eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence            444432 35678899999999999999999988654321  24677888876543 45666666543211       111


Q ss_pred             CCC-HH-----HHHHHHHHHHh--cCCeEEEEEeCCC
Q 045699          231 EGS-ES-----ERAMMLCGQLK--KGKKILFVLDNIW  259 (266)
Q Consensus       231 ~~~-~~-----~~~~~l~~~L~--~~kr~LlvlDDvw  259 (266)
                      +.+ ..     .....+.++++  .|+..||++||+.
T Consensus       223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt  259 (469)
T 2c61_A          223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT  259 (469)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence            222 11     22345567776  3799999999964

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.012  Score=49.41  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVS  209 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~  209 (266)
                      ..-.+++|+|.+|+|||||++.+........ -..++|+...
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e   73 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE   73 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            4567999999999999999999988764321 1145566543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.22  E-value=0.0028  Score=61.46  Aligned_cols=46  Identities=24%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             cccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.+..++.+...+.       ++  ....+.|+|+.|+|||++|+.+.+...
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46788877777766552       11  235899999999999999999998763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.21  E-value=0.0037  Score=49.65  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.|.|+.|+||||+++.+.....
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.20  E-value=0.0073  Score=57.70  Aligned_cols=45  Identities=16%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             cccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          150 AFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++|.+..++.+...+.       +  .....+.++|+.|+|||++|+.+.+..
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            46787777777666542       1  123479999999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.20  E-value=0.0038  Score=49.78  Aligned_cols=28  Identities=32%  Similarity=0.223  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|.|.|+.|+||||+++.+.....
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4467999999999999999999988654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0029  Score=52.16  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|+|+.|+||||+++.+.....
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999987543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.18  E-value=0.0035  Score=50.32  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....|.|.|+.|+||||+++.+.....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346799999999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.18  E-value=0.0023  Score=54.46  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.+++|+|++|+|||||++.+..-
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcC
Confidence            45689999999999999999999664

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.18  E-value=0.0034  Score=51.63  Aligned_cols=28  Identities=18%  Similarity=0.251  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+|+|.|+.|+||||+|+.+.....
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567999999999999999999988644

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.17  E-value=0.0035  Score=49.55  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+..+|+|.|+.|+||||+++.+....
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence            356899999999999999999998763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.16  E-value=0.0035  Score=50.57  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.|.|+.|+||||+++.+....
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.12  E-value=0.0035  Score=49.08  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...++|+|.+|+|||||.+.+....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.11  E-value=0.0045  Score=49.93  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.++|.|.|++|+||||.|+.+.....
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3578999999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.11  E-value=0.0042  Score=49.69  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.10  E-value=0.0033  Score=53.66  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++.+||+|.|-||+||||.+-.+.-...
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA   73 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS   73 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHHHHHHH
Confidence            4679999999999999999998877764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.10  E-value=0.0039  Score=49.74  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|.|+.|+||||+|+.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.09  E-value=0.0041  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.|.|+.|+||||+++.+....
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998864

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.09  E-value=0.003  Score=57.44  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=34.7

Q ss_pred             cccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.+..++.+...+..  ...+.++|++|+|||+||+.+.+...
T Consensus        23 ~ivGq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             hhHHHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHh
Confidence            467777777777666543  35788999999999999999998653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.07  E-value=0.0036  Score=48.51  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+.+|+|++|+|||||+..++--
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            48899999999999999999753

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=96.07  E-value=0.026  Score=51.68  Aligned_cols=94  Identities=14%  Similarity=0.225  Sum_probs=58.4

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHH----HhcC--------
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVAD----QLSL--------  227 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~----~~~~--------  227 (266)
                      ++.|.. .+-..++|+|..|+|||+|+..+.+..    +-+.++++-+.+.. ...++++++-+    ..+.        
T Consensus       223 ID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvv  298 (600)
T 3vr4_A          223 IDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVL  298 (600)
T ss_dssp             HHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEE
T ss_pred             hhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEE
Confidence            444442 457899999999999999999998863    34678888888763 33344433321    1111        


Q ss_pred             --CCCCCCHHH------HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          228 --NICEGSESE------RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       228 --~~~~~~~~~------~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                        +..+.+...      ....+.+++++ |+..||++|++.
T Consensus       299 V~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t  339 (600)
T 3vr4_A          299 IANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS  339 (600)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence              111222111      23345666765 699999999974

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.07  E-value=0.0046  Score=48.06  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|+.|+|||||++.+.....
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            367899999999999999999988754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.06  E-value=0.0024  Score=51.75  Aligned_cols=25  Identities=24%  Similarity=0.078  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+|+|.|+.|+|||||++.+...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4579999999999999999998775

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.06  E-value=0.0039  Score=52.51  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|.|++|+||||+++.+....
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998754

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.04  E-value=0.054  Score=48.47  Aligned_cols=90  Identities=11%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHH-hcC-------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQ-LSL-------------------  227 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~-~~~-------------------  227 (266)
                      ....++.|.|.+|+|||||+..+....... .-..++|++...  +..++...++.. .+.                   
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~  277 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLT  277 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHH
Confidence            345799999999999999999998876432 123577776554  334555444321 111                   


Q ss_pred             --------------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 045699          228 --------------NICEGSESERAMMLCGQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       228 --------------~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~  260 (266)
                                    .....+..++...++......+.-+||+|.+..
T Consensus       278 ~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~  324 (454)
T 2r6a_A          278 MAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQL  324 (454)
T ss_dssp             HHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGG
T ss_pred             HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHH
Confidence                          011235666666666555432556889997654

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=96.03  E-value=0.048  Score=49.76  Aligned_cols=96  Identities=10%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH-HHHHHHHHH----HhcC--------
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV-KRIQGDVAD----QLSL--------  227 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~-~~~~~~i~~----~~~~--------  227 (266)
                      ++.|.. .+-..++|+|..|+|||+|++.+.+..    +-+.++++-+.+..+. .++.+++-+    ..+.        
T Consensus       218 ID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvv  293 (588)
T 3mfy_A          218 IDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVL  293 (588)
T ss_dssp             HHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEE
T ss_pred             hhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEE
Confidence            444432 456899999999999999999987753    3468889999876653 344444321    0110        


Q ss_pred             --CCCCCCHH------HHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          228 --NICEGSES------ERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       228 --~~~~~~~~------~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                        ...+.+..      .....+.+++++ |+..||++|++...
T Consensus       294 V~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~  336 (588)
T 3mfy_A          294 IANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW  336 (588)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence              11122211      112334566654 69999999999753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.01  E-value=0.0045  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|.|+.|+||||+|+.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999997754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.01  E-value=0.0039  Score=48.98  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...++|+|.+|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.01  E-value=0.037  Score=56.20  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|||+.|+|||||++.+..-.
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence            456899999999999999999997653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.99  E-value=0.0044  Score=51.96  Aligned_cols=24  Identities=33%  Similarity=0.666  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ...+|+|.|+.|+||||+|+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999983

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.99  E-value=0.073  Score=45.76  Aligned_cols=51  Identities=12%  Similarity=0.053  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      ...++.|.|.+|+||||||..+......  .-..++|++..  -+..++...++.
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls   95 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS   95 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence            4578999999999999999999877543  22456676654  445666666544

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.98  E-value=0.005  Score=48.58  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +|+|.|+.|+||||+++.+.....
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999987643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.97  E-value=0.0049  Score=50.26  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+++.+.....
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.96  E-value=0.012  Score=47.80  Aligned_cols=28  Identities=32%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ....|.|.|+.|+||||+++.+......
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4578999999999999999999998763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.94  E-value=0.0033  Score=51.76  Aligned_cols=26  Identities=35%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|++|+||||+|+.+....
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45789999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.93  E-value=0.0048  Score=54.26  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.+++|+|++|+|||||.+.+..-
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            45689999999999999999999763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.93  E-value=0.032  Score=45.26  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +...++|.|+.|+||||+|+.+.....
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999988764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.92  E-value=0.0059  Score=56.87  Aligned_cols=46  Identities=15%  Similarity=0.191  Sum_probs=37.1

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|.+..++.+...+...  ..+.|+|++|+||||||+.+.....
T Consensus        40 l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           40 IDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             cceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            456788888887777666543  5899999999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.90  E-value=0.0043  Score=53.99  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++|+|++|+|||||++.+..-..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.87  E-value=0.073  Score=47.47  Aligned_cols=52  Identities=12%  Similarity=0.008  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      ...++.|.|.+|+||||||..+....... .-..++|++...  +..++...++.
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~  250 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMC  250 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence            45789999999999999999998775422 123577776653  34566655543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.87  E-value=0.0048  Score=53.41  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||.+.+.+..+
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.86  E-value=0.0064  Score=49.73  Aligned_cols=27  Identities=19%  Similarity=0.047  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+|.|.|+.|+||||+|+.+.+..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.84  E-value=0.03  Score=57.78  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=58.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~  242 (266)
                      ...++.|.|.+|+||||||..+.......  -..++|++........  .   +..++.+.      ...+..++...+.
T Consensus       731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~  803 (1706)
T 3cmw_A          731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICD  803 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHH
Confidence            45799999999999999999998876522  2367788777766543  2   55666432      2335566666666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...+..+--+||+|.+-..
T Consensus       804 ~lv~~~~~~lVVIDsLq~l  822 (1706)
T 3cmw_A          804 ALARSGAVDVIVVDSVAAL  822 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTTC
T ss_pred             HHHHccCCCEEEEechhhh
Confidence            5554436669999988654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.80  E-value=0.006  Score=52.53  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|+|.|+.|+||||||+.+.....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999988753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.0046  Score=55.61  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+.+-.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            356899999999999999999997753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.78  E-value=0.0077  Score=48.88  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|+|.|+.|+||||+++.+....
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.76  E-value=0.0063  Score=52.85  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++|+|+.|+|||||.+.+.+...
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            456999999999999999999977643

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.76  E-value=0.0043  Score=52.98  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+.++.|.|+.|+|||||.+.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            46799999999999999999998753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.75  E-value=0.0057  Score=51.02  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.++.|+|++|+|||||+..+.....
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            457999999999999999999987543

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=95.74  E-value=0.0088  Score=54.01  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHHHhccccCCC-eEEEEEeCCCCC-HHHHHHHHHHHhcC--------CCCCCC----
Q 045699          169 NVDVIGLCGVGGIGKTTLA-KIVCDQAKKLKVCD-EVVFVEVSRTPD-VKRIQGDVADQLSL--------NICEGS----  233 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~f~-~~~wv~v~~~~~-~~~~~~~i~~~~~~--------~~~~~~----  233 (266)
                      +-..++|+|..|+|||+|| ..+.+...    -+ .++++-+++... ..++.+++...-..        ..+...    
T Consensus       162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~  237 (507)
T 1fx0_A          162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY  237 (507)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred             cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence            4678999999999999994 67777542    34 467888887653 33444444332111        111111    


Q ss_pred             -HHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          234 -ESERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       234 -~~~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                       .......+.+++++ |+..||++||+.
T Consensus       238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt  265 (507)
T 1fx0_A          238 LAPYTGAALAEYFMYRERHTLIIYDDLS  265 (507)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence             12233445555554 599999999974

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.74  E-value=0.0081  Score=51.39  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|+|+|++|+||||++..+.....
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999987654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.73  E-value=0.007  Score=48.29  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|.|+.|+||||+|+.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998865

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.72  E-value=0.0072  Score=48.66  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|.|+.|+||||+++.+....
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.71  E-value=0.0072  Score=52.90  Aligned_cols=28  Identities=29%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -....+++|+|+.|+|||||++.+....
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3556799999999999999999999754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.68  E-value=0.0095  Score=52.06  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -....+++|+|++|+|||||++.+..-..
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34567999999999999999999977543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.68  E-value=0.015  Score=50.43  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=27.6

Q ss_pred             HHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          159 NDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       159 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..++..+.  ..+..+|+|+|.+|+|||||+..+....
T Consensus        66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444443  4567899999999999999999987664

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.67  E-value=0.0076  Score=48.24  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...|.|.|+.|+||||+++.+.....
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999988653

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.66  E-value=0.042  Score=57.50  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=59.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNI------CEGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~  242 (266)
                      ...++-|.|++|+||||||..+......  .-..++|++....++...     ++.++.+.      ...+.+++...+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~  454 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  454 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence            5679999999999999999999887652  224688888888776542     55666532      2234566666665


Q ss_pred             HHHhcCCeEEEEEeCCCC
Q 045699          243 GQLKKGKKILFVLDNIWT  260 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~  260 (266)
                      ...+.++--+||+|-+-.
T Consensus       455 ~lv~~~~~~lIVIDSL~a  472 (2050)
T 3cmu_A          455 ALARSGAVDVIVVDSVAA  472 (2050)
T ss_dssp             HHHHHTCCSEEEESCGGG
T ss_pred             HHHHhcCCcEEEECCHHH
Confidence            555443566999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.66  E-value=0.0093  Score=48.28  Aligned_cols=27  Identities=26%  Similarity=0.097  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....|.|.|+.|+||||+|+.+.....
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346799999999999999999988753

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.64  E-value=0.0079  Score=53.71  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             ccccchHHHHHHHHHHhCC--------------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDALSN--------------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++|.+..++.|...+..              ...+-|.++|+.|+||||+|+.+.....
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3467877777766544411              1346799999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.64  E-value=0.0064  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|+|+|.+|+|||||.+.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999764

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=95.63  E-value=0.039  Score=39.61  Aligned_cols=81  Identities=15%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             hhchHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCccchHHHHHHHHHHHHHHHHHhhh
Q 045699            5 IFSIPAKVLGQLVGTIPGQLRNYKSNFADLKKKTEKLKLTIEDLQLWV-DAAKENGEEIEQSVERWLISANTTVVEAGKL   83 (266)
Q Consensus         5 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~el~~l~~~l~~i~~~l-~~ae~~~~~~~~~~~~Wl~~vr~~a~d~ed~   83 (266)
                      +++.+..-++.++..-...+.+++.+++.++++|+.|+++|.++...- ......-..--..++.-.-.+.|+..+..--
T Consensus         2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~   81 (115)
T 3qfl_A            2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ   81 (115)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455444444444444589999999999999999999999875430 0000000011234555555666665544443


Q ss_pred             HH
Q 045699           84 IE   85 (266)
Q Consensus        84 ld   85 (266)
                      ++
T Consensus        82 ~~   83 (115)
T 3qfl_A           82 VD   83 (115)
T ss_dssp             HH
T ss_pred             hc
Confidence            33

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.62  E-value=0.037  Score=43.69  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      .|.|=|.-|+||||.++.+.+..+.++  -.++...-+......+..+.++
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l   50 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKIL   50 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHh
Confidence            367779999999999999999876332  2334444333333334444444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.61  E-value=0.039  Score=56.00  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +....++|||..|+|||||++.+..-
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcC
Confidence            45678999999999999999999664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.57  E-value=0.0078  Score=55.26  Aligned_cols=94  Identities=23%  Similarity=0.238  Sum_probs=57.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-----------CC---------------eEEEEEeCCCC---------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-----------CD---------------EVVFVEVSRTP---------  212 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-----------f~---------------~~~wv~v~~~~---------  212 (266)
                      .-.+++|+|++|+|||||++.+..-.... +.           |+               ..+ ..+.+..         
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~q~~~~~~~~~~~  124 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRP-VVKPQYVDLIPKAVKG  124 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCC-EEECSCGGGSGGGCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhh-hhhhhhhhhcchhhhc
Confidence            45799999999999999999998753211 00           10               000 0112211         


Q ss_pred             CHHH---------HHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 DVKR---------IQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 ~~~~---------~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +..+         -..+++..++..      ....|..+. .-.|...|.. +.=+|+||+..+.+|.
T Consensus       125 ~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~-~P~lLlLDEPTs~LD~  191 (538)
T 1yqt_A          125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR-NATFYFFDEPSSYLDI  191 (538)
T ss_dssp             BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTTTCCH
T ss_pred             cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence            1211         134567777652      224564443 3456777777 8889999999998874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.56  E-value=0.0058  Score=53.16  Aligned_cols=26  Identities=38%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....++|+|+.|+|||||++.+..-.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999998754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.55  E-value=0.011  Score=52.58  Aligned_cols=29  Identities=21%  Similarity=0.179  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....+++|+|+.|+|||||.+.+.....
T Consensus       164 ~~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          164 KRPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            35567999999999999999999988754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.54  E-value=0.026  Score=50.62  Aligned_cols=42  Identities=24%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          153 SRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       153 gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +....+..+..++.... ..+.|.|.+|+||||++..+.....
T Consensus        29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34455566666665433 3999999999999999999988765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.54  E-value=0.0078  Score=53.31  Aligned_cols=25  Identities=20%  Similarity=0.314  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+++|+|.+|+|||||.+.+..-
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            5679999999999999999999883

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.52  E-value=0.0087  Score=51.17  Aligned_cols=24  Identities=38%  Similarity=0.373  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+|.|+|+.|+||||||+.+....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            589999999999999999998864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.52  E-value=0.044  Score=56.51  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      .-++|-|+|+.|+||||||-++....+  ..=..++|+...+..++.-     ++++|.+.+      +.+.++-...+.
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a~~~--~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence            458999999999999999999987654  3446788998888877763     778888543      223445555666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ..++++.--+||+|-|-..
T Consensus      1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A         1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTTC
T ss_pred             HHHHcCCCCEEEEccHHhC
Confidence            6777767779999987543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.52  E-value=0.011  Score=48.35  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++.+.|.||+|||||+..+.....
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999986654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.52  E-value=0.0098  Score=44.45  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|.|+|..|+|||||...+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.51  E-value=0.0072  Score=46.77  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      -|.|+|.+|+|||||.+.+.+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.51  E-value=0.1  Score=47.58  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcC----------------CCCCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSL----------------NICEG  232 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~----------------~~~~~  232 (266)
                      .-.+++|+|.+|+|||||++.+........  ..++++....  ....+...+ ..++.                .....
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L  354 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENACANK--ERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA  354 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence            457999999999999999999988754321  2334444322  233443322 11211                11123


Q ss_pred             CHHHHHHHH-HHHHhcCCeEEEEEeCCCCCC
Q 045699          233 SESERAMML-CGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       233 ~~~~~~~~l-~~~L~~~kr~LlvlDDvw~~~  262 (266)
                      +..+.+..+ ...+.. +.=+|||| ..+.+
T Consensus       355 S~g~~q~~~~a~~l~~-~p~llilD-p~~~L  383 (525)
T 1tf7_A          355 GLEDHLQIIKSEINDF-KPARIAID-SLSAL  383 (525)
T ss_dssp             CHHHHHHHHHHHHHTT-CCSEEEEE-CHHHH
T ss_pred             CHHHHHHHHHHHHHhh-CCCEEEEc-ChHHH
Confidence            555555444 444555 67788999 54433

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.50  E-value=0.0044  Score=52.27  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +..+|+|.|+.|+||||+|+.+....
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.49  E-value=0.0083  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|+++|.+|+|||||.+.+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.48  E-value=0.0086  Score=50.31  Aligned_cols=23  Identities=30%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+|.|.|+.|+||||+|+.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.48  E-value=0.009  Score=53.92  Aligned_cols=25  Identities=28%  Similarity=0.199  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+++|+|++|+|||||.+.+..-..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            8999999999999999999987643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.47  E-value=0.018  Score=45.93  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             HHHHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          158 LNDALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       158 ~~~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+..++.. +....+.|+|++|+||||+|..+.+...
T Consensus        45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455555543 2334799999999999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.46  E-value=0.0089  Score=44.67  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .|.++|.+|+|||||...+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999865

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.46  E-value=0.059  Score=43.42  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      ...++-|.|.+|+|||+||..+..+... ..-..++|++...  +...+...+
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~-~~~~~v~~~s~E~--~~~~~~~~~   78 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE--RARDLRREM   78 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS--CHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCceeecccC--CHHHHHHHH
Confidence            4578999999999999999886543211 1223566666553  345555443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.44  E-value=0.015  Score=49.22  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=25.7

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.+.+.   -.+++++|++|+|||||.+.+. ..
T Consensus       157 ~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          157 DELVDYLE---GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             HHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             HHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            45555553   4689999999999999999998 53

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.43  E-value=0.011  Score=51.01  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -....+++|+|++|+|||||.+.+..-.
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            3567899999999999999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=95.43  E-value=0.007  Score=51.25  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|+|+|.+|+|||||.+.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3499999999999999998753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.42  E-value=0.0087  Score=53.47  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=26.2

Q ss_pred             hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.-..-.+++|+|++|+|||||++.+.+...
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3335678999999999999999999999754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.42  E-value=0.068  Score=54.12  Aligned_cols=92  Identities=21%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE------------------EeCCCC-----------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV------------------EVSRTP-----------------  212 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv------------------~v~~~~-----------------  212 (266)
                      +.-.+++|+|++|+|||||++.+..-.   ......+.+                  .|+|++                 
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~---~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~  490 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLY---DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED  490 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSS---CCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC


Q ss_pred             -CHHHHHHHHHHH----------------hcCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEeCCCCCCC
Q 045699          213 -DVKRIQGDVADQ----------------LSLNICEGSESERAMM-LCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       213 -~~~~~~~~i~~~----------------~~~~~~~~~~~~~~~~-l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                       +..++...+-..                ++..-...|..+.+.. |.+.|-. +.=+++|||..+..|
T Consensus       491 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~-~p~iliLDEpts~LD  558 (1284)
T 3g5u_A          491 VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR-NPKILLLDEATSALD  558 (1284)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH-CCSEEEEESTTCSSC
T ss_pred             CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc-CCCEEEEECCCCCCC

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.41  E-value=0.11  Score=46.37  Aligned_cols=51  Identities=14%  Similarity=0.061  Sum_probs=35.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      ....++.|.|.+|+||||||..+......+  -..++|++...+  ..++...++
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~  245 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI  245 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence            345789999999999999999998776433  235777765543  334444443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.39  E-value=0.0093  Score=52.89  Aligned_cols=27  Identities=33%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+|.|+|+.|+||||+|+.+....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            456899999999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.38  E-value=0.036  Score=45.20  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEE
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVE  207 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~  207 (266)
                      ...|.|.|+.|+||||+++.+...... ..+.......
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r   63 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR   63 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence            578999999999999999999988753 3455344443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.36  E-value=0.01  Score=44.60  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.|.|+|.+|+|||||...+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            346889999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.35  E-value=0.0062  Score=52.34  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....++|+|++|+|||||++.+..-..
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            346899999999999999999987643

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.32  E-value=0.14  Score=46.44  Aligned_cols=51  Identities=16%  Similarity=0.134  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      ...++.|.|.+|+||||||..+......+ +-..++|++...+  ..++...++
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s--~~~l~~r~~  291 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES--VEETAEDLI  291 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC--HHHHHHHHH
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC--HHHHHHHHH
Confidence            45789999999999999999998776432 1236777776543  456655543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.32  E-value=0.012  Score=50.09  Aligned_cols=25  Identities=16%  Similarity=0.404  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|+|+.|+||||||..+....
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            3589999999999999999998754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.30  E-value=0.012  Score=44.42  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..+..|+|++|+||||+...++--
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468899999999999999998643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.26  E-value=0.0073  Score=47.65  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ......++|+|.+|+|||||.+.+...
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999988654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.25  E-value=0.0076  Score=53.51  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDV--IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~v--i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....+  ++|+|.+|+|||||.+.++..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34456  999999999999999999764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.24  E-value=0.016  Score=49.28  Aligned_cols=26  Identities=31%  Similarity=0.151  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|+.|+||||||..+....
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC
Confidence            35789999999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.23  E-value=0.018  Score=44.45  Aligned_cols=26  Identities=35%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .....|.|+|.+|+|||||.+.+.+.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.22  E-value=0.012  Score=45.54  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -.|.++|.+|+|||||+..+.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468899999999999999998763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.22  E-value=0.015  Score=45.01  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999775

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.19  E-value=0.013  Score=43.98  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-|.|+|..|+|||||...+.+..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            468899999999999999998753

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.18  E-value=0.048  Score=43.67  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...|.+-|+.|+||||+++.+......
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999988763

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.17  E-value=0.036  Score=44.74  Aligned_cols=29  Identities=28%  Similarity=0.480  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      .....|.|.|+.|+||||+++.+.+....
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45678999999999999999999988764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.17  E-value=0.015  Score=47.29  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.|.|..|+||||+++.+....
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.16  E-value=0.055  Score=43.30  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=25.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDE  202 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~  202 (266)
                      ...|.|-|+.|+||||+++.+....... .+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v   37 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV   37 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence            4688999999999999999999887532 3444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.16  E-value=0.011  Score=45.29  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|+|+|.+|+|||||.+.+...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356899999999999999999865

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.16  E-value=0.012  Score=50.63  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|.|+|+.|+|||||+..+....
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            34689999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.14  E-value=0.013  Score=45.37  Aligned_cols=24  Identities=33%  Similarity=0.191  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhh
Confidence            356899999999999999888765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.14  E-value=0.012  Score=54.76  Aligned_cols=94  Identities=23%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc-cC-----------CC---------------eEEEEEeCCCC---------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL-KV-----------CD---------------EVVFVEVSRTP---------  212 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~-----------f~---------------~~~wv~v~~~~---------  212 (266)
                      .-.+++|+|++|+|||||++.+....... +.           |.               ..+. .+.+..         
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~  194 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV-VKPQYVDLLPKAVKG  194 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCE-EECSCGGGGGGTCCS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceE-Eeechhhhchhhccc
Confidence            45799999999999999999997643211 00           10               0010 111211         


Q ss_pred             CHHH---------HHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 DVKR---------IQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 ~~~~---------~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      +..+         -..++++.++..      ....|..+.+ -.|...|-. +.=+|+||+..+.+|.
T Consensus       195 tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~-~P~lLlLDEPTs~LD~  261 (607)
T 3bk7_A          195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLR-KAHFYFFDEPSSYLDI  261 (607)
T ss_dssp             BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEECTTTTCCH
T ss_pred             cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhc-CCCEEEEECCcccCCH
Confidence            1111         234566776652      2345654443 456777777 7889999999998874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.12  E-value=0.014  Score=43.88  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||.+.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999875

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=95.09  E-value=0.026  Score=51.45  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCC-CHHHHHHHHHH----HhcC--------
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTP-DVKRIQGDVAD----QLSL--------  227 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~-~~~~~~~~i~~----~~~~--------  227 (266)
                      ++.|.. .+-..++|+|..|+|||+|+..+.+..    +-+.++++-+.+.. ...++.+++-+    ..+.        
T Consensus       212 ID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvv  287 (578)
T 3gqb_A          212 LDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS----NADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVL  287 (578)
T ss_dssp             HHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEE
T ss_pred             hhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEE
Confidence            444432 356889999999999999999998764    34678888888663 23333333211    1111        


Q ss_pred             --CCCCCCHH-H-----HHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          228 --NICEGSES-E-----RAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       228 --~~~~~~~~-~-----~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                        ...+.+.. .     ....+.+++++ |+..||++|++.
T Consensus       288 v~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t  328 (578)
T 3gqb_A          288 IANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMADSTS  328 (578)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHHHTTCEEEECCSCHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecChH
Confidence              11122211 1     12334556654 699999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.08  E-value=0.015  Score=43.57  Aligned_cols=22  Identities=27%  Similarity=0.226  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||...+.+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.08  E-value=0.011  Score=54.32  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...++.|+|++|+|||||++.+.....
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhc
Confidence            457999999999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.06  E-value=0.022  Score=48.17  Aligned_cols=33  Identities=18%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +++..++.   -.+++|+|++|+|||||.+.+....
T Consensus       161 ~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          161 EELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             HHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence            44555553   4689999999999999999997643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.05  E-value=0.019  Score=43.94  Aligned_cols=33  Identities=27%  Similarity=0.208  Sum_probs=25.0

Q ss_pred             HHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          161 ALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       161 l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +.+.+.. .....|.|+|..|+|||||...+.+.
T Consensus         8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A            8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3343333 56678999999999999999988643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.05  E-value=0.015  Score=43.91  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.|.|+|..|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999865

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.04  E-value=0.016  Score=50.13  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+|+|+|.+|+|||||...+....
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.04  E-value=0.012  Score=44.66  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||.+.+.+.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            346899999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.03  E-value=0.015  Score=43.73  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -|.|+|..|+|||||...+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.02  E-value=0.013  Score=44.15  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.|.|+|..|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.02  E-value=0.015  Score=43.51  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.|.|+|..|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999988765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.01  E-value=0.017  Score=43.96  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+...|.|+|..|+|||||...+.+.
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.01  E-value=0.015  Score=43.74  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -.|.|+|..|+|||||.+.+.+..
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            468999999999999999998763

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.00  E-value=0.014  Score=54.12  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +...+++|+|++|+|||||++.+..-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456899999999999999999997653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.00  E-value=0.014  Score=54.13  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +...+++|+|++|+|||||++.+..-.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            456799999999999999999997653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.00  E-value=0.015  Score=44.31  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999998775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.99  E-value=0.017  Score=45.54  Aligned_cols=28  Identities=21%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+.-.|.|+|..|+|||||...+.+.
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3345567899999999999999888765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.97  E-value=0.019  Score=45.44  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .....|.|+|..|+|||||...+.+..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            346789999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.97  E-value=0.018  Score=44.60  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .....|.|+|..|+|||||...+.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.96  E-value=0.015  Score=50.53  Aligned_cols=26  Identities=19%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -.+++|+|++|+|||||.+.+.....
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CCEEEEECCCCccHHHHHHHHhcccc
Confidence            36899999999999999999986543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.93  E-value=0.016  Score=44.71  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-|.|+|.+|+|||||.+.+.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            356889999999999999999875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.93  E-value=0.016  Score=44.14  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999999876

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.91  E-value=0.025  Score=44.37  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             HHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699          161 ALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       161 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      +++.+. ..+...|+|+|.+|+|||||.+.+.+
T Consensus        15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            344442 33445689999999999999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.91  E-value=0.027  Score=43.39  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=25.7

Q ss_pred             HHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          160 DALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       160 ~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+.+ +.......|.|+|..|+|||||...+.+.
T Consensus         7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A            7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3444 33455678999999999999999999854

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.90  E-value=0.017  Score=43.95  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.90  E-value=0.017  Score=44.80  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999877665

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.89  E-value=0.018  Score=44.43  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....|.|+|..|+|||||...+.+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            45678999999999999999998763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.88  E-value=0.015  Score=43.73  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      --|.|+|..|+|||||.+.+.+
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3588999999999999998854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.88  E-value=0.017  Score=43.34  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      --|.|+|..|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.88  E-value=0.017  Score=43.45  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      --|.|+|..|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999998765

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=94.86  E-value=0.036  Score=54.08  Aligned_cols=22  Identities=18%  Similarity=0.048  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v  190 (266)
                      ...+++|.|++|+||||+.+.+
T Consensus       661 ~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          661 KQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TBCEEEEECCTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            4579999999999999999998

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.84  E-value=0.017  Score=43.97  Aligned_cols=24  Identities=29%  Similarity=0.327  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346889999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.83  E-value=0.016  Score=43.69  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      --|.|+|..|+|||||...+.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3588999999999999999853

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.80  E-value=0.018  Score=43.66  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.|+|..|+|||||...+.+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4578999999999999999998764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.80  E-value=0.018  Score=45.91  Aligned_cols=24  Identities=38%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+|+|.|+.|+||||+++.+....
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            479999999999999999997754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.80  E-value=0.018  Score=44.84  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +...|.|+|.+|+|||||.+.+.+.
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.77  E-value=0.019  Score=43.26  Aligned_cols=24  Identities=29%  Similarity=0.220  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.76  E-value=0.021  Score=49.19  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .....+++|+|.+|+|||||+..+....
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999997654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.75  E-value=0.019  Score=44.07  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      --|.|+|..|+|||||...+.+..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358899999999999999998753

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=94.75  E-value=0.023  Score=46.81  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++|+|.|-||+||||+|..+.....
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la   26 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHH
Confidence            5788899999999999999988765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.72  E-value=0.02  Score=43.90  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.|.|+|..|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.70  E-value=0.02  Score=44.07  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.|.|+|..|+|||||...+.+.
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999875

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.70  E-value=0.02  Score=44.39  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999998875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.69  E-value=0.02  Score=43.95  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.|.|+|..|+|||||.+.+.+..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            3578999999999999999998653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.68  E-value=0.021  Score=50.28  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+|.|.|+.|+||||||..+....
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            578999999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.67  E-value=0.02  Score=44.32  Aligned_cols=26  Identities=19%  Similarity=0.209  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..--|.|+|..|+|||||...+.+..
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence            34578999999999999998887653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.65  E-value=0.021  Score=43.68  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...|.|+|..|+|||||...+.+..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCC
Confidence            4568999999999999999998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.64  E-value=0.022  Score=44.18  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .--|.|+|..|+|||||...+.+..
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            4578999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.63  E-value=0.019  Score=43.71  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.|.|+|..|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.63  E-value=0.017  Score=44.47  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .|.|+|.+|+|||||...+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5789999999999999998775

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.62  E-value=0.021  Score=43.29  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.|.|+|..|+|||||...+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.61  E-value=0.022  Score=43.60  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      --|.|+|..|+|||||...+.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998765

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.60  E-value=0.014  Score=51.73  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |+|+|.+|+|||||.+.++..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            599999999999999999865

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.59  E-value=0.026  Score=43.90  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....-|.|+|..|+|||||...+.+.
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.58  E-value=0.022  Score=43.38  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|.|+|..|+|||||...+.+.
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.57  E-value=0.023  Score=43.40  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..--|.|+|..|+|||||...+.+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.54  E-value=0.015  Score=51.80  Aligned_cols=26  Identities=38%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|+|.+|+||||++..+.....
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.54  E-value=0.023  Score=44.40  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.53  E-value=0.023  Score=43.44  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457899999999999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.023  Score=43.22  Aligned_cols=25  Identities=36%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.|.|+|..|+|||||...+.+..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCC
Confidence            3468999999999999999987653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.52  E-value=0.013  Score=54.25  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +....++|+|++|+|||||++.+..-.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            456899999999999999999986643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.51  E-value=0.023  Score=44.46  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....|.|+|..|+|||||...+.+..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34578999999999999999997753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.50  E-value=0.017  Score=44.02  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      --|.++|.+|+|||||...+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45889999999999999998775

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.49  E-value=0.019  Score=44.77  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...-|.|+|.+|+|||||.+.+.+.
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhc
Confidence            4567899999999999999987764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.49  E-value=0.024  Score=43.96  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.|.|+|..|+|||||...+.+.
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.49  E-value=0.018  Score=52.51  Aligned_cols=25  Identities=20%  Similarity=-0.001  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...++|+|+.|+|||||++.+..-.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4569999999999999999997764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.48  E-value=0.016  Score=53.91  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +...+++|+|++|+|||||++.+..-.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            456899999999999999999997653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.47  E-value=0.021  Score=48.23  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +...|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3468999999999999999999875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.47  E-value=0.022  Score=44.37  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ......|.|+|..|+|||||...+.+.
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence            345567999999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.46  E-value=0.024  Score=44.04  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.|.|+|..|+|||||...+.+..
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.45  E-value=0.024  Score=44.37  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....|.|+|..|+|||||...+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            45678999999999999999998753

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=94.44  E-value=0.03  Score=46.77  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|+|.|-||+||||+|..+.....
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La   27 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHH
Confidence            46889999999999999999987765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.44  E-value=0.018  Score=45.12  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~  191 (266)
                      ....|.|+|.+|+|||||.+.+.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            34678999999999999999984

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.43  E-value=0.02  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v  190 (266)
                      ..-.+++|+|++|+|||||++.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            35689999999999999999995

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.43  E-value=0.024  Score=46.96  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999765

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.42  E-value=0.053  Score=43.90  Aligned_cols=27  Identities=33%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....|.|-|+.|+||||+++.+.+...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.41  E-value=0.027  Score=43.93  Aligned_cols=23  Identities=39%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ..-|.|+|.+|+|||||...+.+
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999998875

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.41  E-value=0.014  Score=54.28  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+.++|+.|+|||+||+.+.+..
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTC
T ss_pred             ceEEECCCchHHHHHHHHHHHhC
Confidence            68999999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.40  E-value=0.013  Score=48.31  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +...|.|.|..|+||||+++.+....
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999999987764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.40  E-value=0.025  Score=44.59  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-|.|+|..|+|||||.+.+.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            457899999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.39  E-value=0.025  Score=43.89  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...-|.|+|..|+|||||...+.+.
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3457899999999999999999774

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.38  E-value=0.025  Score=44.68  Aligned_cols=25  Identities=24%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...-|.|+|..|+|||||.+.+.+.
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.38  E-value=0.026  Score=43.67  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .-.|.|+|..|+|||||...+.+..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4578999999999999999998753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.38  E-value=0.022  Score=46.13  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|+|+|..|+|||||...+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.37  E-value=0.042  Score=49.92  Aligned_cols=42  Identities=7%  Similarity=-0.083  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          154 RKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       154 r~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.+..+.+.+...  .++..+|.+.|+.|+||||+|+.+.....
T Consensus       377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            3333444555442  23567899999999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.37  E-value=0.026  Score=43.60  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.|.|+|..|+|||||...+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999999865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.36  E-value=0.026  Score=44.54  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....|.|+|.+|+|||||...+.+..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678999999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.35  E-value=0.027  Score=43.66  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            346889999999999999999765

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.33  E-value=0.028  Score=48.30  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ..+..|+|++|+|||||...|+-
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            47889999999999999998854

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.33  E-value=0.027  Score=43.68  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .--|.|+|..|+|||||...+.+..
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998763

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.32  E-value=0.027  Score=43.46  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-|.|+|..|+|||||...+.+..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Confidence            4578999999999999999998763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.32  E-value=0.028  Score=44.60  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ..+..|+|++|+||||+...++-
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999998853

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.30  E-value=0.026  Score=49.06  Aligned_cols=22  Identities=36%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+.+|+|++|+|||||...++.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4999999999999999999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.30  E-value=0.011  Score=50.25  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.+++|+|++|+|||||.+.+...
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHhccc
Confidence            469999999999999999999654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.29  E-value=0.025  Score=44.24  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-|.|+|..|+|||||...+.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999987753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.27  E-value=0.032  Score=44.20  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.|.|+.|+||||+++.+.....
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999988764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.25  E-value=0.029  Score=43.34  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467899999999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.24  E-value=0.029  Score=43.82  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....-|.|+|..|+|||||...+.+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34678999999999999999999765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.24  E-value=0.0042  Score=50.48  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +++|+|++|+|||||.+.+..-..
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcccc
Confidence            557899999999999999977643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.23  E-value=0.019  Score=53.23  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.-.+++|+|++|+|||||++.+..-.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            456899999999999999999996643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.23  E-value=0.029  Score=43.25  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|.|+|..|+|||||...+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.21  E-value=0.024  Score=44.46  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..--|.|+|..|+|||||.+.+.+.
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3457899999999999999998754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=94.20  E-value=0.066  Score=44.40  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhCCC--CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          156 SILNDALDALSNP--NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       156 ~~~~~l~~~l~~~--~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .....+..|+...  ...-+.++|++|.|||++|..+.+.
T Consensus        88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            3445677777643  3457999999999999999999885

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.19  E-value=0.024  Score=44.18  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..--|.|+|..|+|||||...+.+.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3557889999999999999988765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.16  E-value=0.03  Score=43.90  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999775

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.14  E-value=0.028  Score=49.88  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..+.+|+|++|+|||||...++--
T Consensus        26 ~~~~~i~G~nG~GKstll~ai~~~   49 (430)
T 1w1w_A           26 SNFTSIIGPNGSGKSNMMDAISFV   49 (430)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            578999999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.12  E-value=0.034  Score=42.66  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .....|.|+|..|+|||||...+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997654

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.08  E-value=0.038  Score=50.42  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+|.++|+.|+||||+|+.+.....
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999977653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.07  E-value=0.032  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            357899999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.05  E-value=0.034  Score=48.33  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .+..|+|++|+|||||...++-
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999873

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.03  E-value=0.041  Score=44.51  Aligned_cols=25  Identities=20%  Similarity=0.081  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -.|.+.|.||+||||+|-.+.....
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~   31 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQL   31 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3477889999999999988888765

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.03  E-value=0.032  Score=44.70  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .....|.|+|..|+|||||...+.+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.02  E-value=0.033  Score=43.12  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-|.|+|..|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999876

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.01  E-value=0.027  Score=44.69  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457899999999999999999764

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=93.98  E-value=0.1  Score=45.04  Aligned_cols=31  Identities=32%  Similarity=0.409  Sum_probs=25.1

Q ss_pred             hCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          165 LSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       165 l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.....+++.+.|.||+||||+|..+.....
T Consensus        13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la   43 (348)
T 3io3_A           13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA   43 (348)
T ss_dssp             HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence            3455678999999999999999998876554

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.97  E-value=0.035  Score=43.59  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            467899999999999999998865

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.96  E-value=0.026  Score=43.32  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|.|+|..|+|||||...+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999865

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.91  E-value=0.043  Score=42.78  Aligned_cols=24  Identities=21%  Similarity=0.028  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++.|+|+.|+||||++..+....
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            578899999999999985555443

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=93.89  E-value=0.1  Score=44.82  Aligned_cols=30  Identities=30%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....+++.+.|-||+||||+|-.+.....
T Consensus        12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la   41 (334)
T 3iqw_A           12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLA   41 (334)
T ss_dssp             HCTTCCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cCCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence            344567888889999999999999877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.89  E-value=0.036  Score=43.34  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-|.|+|..|+|||||...+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=93.88  E-value=0.033  Score=43.18  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ....|.|+|..|+|||||...+.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999998664

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.87  E-value=0.036  Score=43.42  Aligned_cols=25  Identities=20%  Similarity=0.173  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...-|.|+|..|+|||||...+.+.
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3467899999999999999998764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=93.86  E-value=0.023  Score=52.93  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+..++|+|..|+|||||.+.+..-.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCC
Confidence            46779999999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.86  E-value=0.029  Score=44.52  Aligned_cols=25  Identities=20%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -..|.|.|+.|+||||||..+....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4678999999999999999997764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=93.84  E-value=0.02  Score=43.91  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=10.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-|.|+|..|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEECCCCC------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999988654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.82  E-value=0.038  Score=43.51  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.81  E-value=0.021  Score=55.78  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...+++|+|++|+|||||.+.+..-
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.79  E-value=0.069  Score=47.55  Aligned_cols=43  Identities=16%  Similarity=0.346  Sum_probs=30.7

Q ss_pred             cchHHHHHHHHHHhC----C-------CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          152 ESRKSILNDALDALS----N-------PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       152 ~gr~~~~~~l~~~l~----~-------~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.++..+.+.+.+.    .       .....++|+|.+|+|||||.+.+....
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            345556666665542    1       123589999999999999999998753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=93.79  E-value=0.035  Score=43.07  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .--|.|+|..|+|||||...+.+.
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	4e-11
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	2e-04

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 152 ESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL--KVCDEVVFVEVS 209
           E     +   LD + + +   + L G  G GK+ +A     ++ +L     D +V+++ S
Sbjct: 26  EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 85

Query: 210 RTPDVKRIQ-----------GDVADQLSLNICEGSESERAMMLCGQLKKGKKILFVLDNI 258
            T                   D            S   + M+    +      LFV D++
Sbjct: 86  GTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDV 144

Query: 259 WTSLDLE 265
                + 
Sbjct: 145 VQEETIR 151

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 113 AWEVKAIAGLLEEGKFDEVSFCTRPEGILLMCSEGYEAFESRKSILNDALDALSNPNVDV 172
             E+  + G+ E+   +EV+    P   LL       +   R+++L   L         +
Sbjct: 25  EDEIARLKGINEDLSLEEVAEIYLPLSRLLNFY--ISSNLRRQAVLEQFLGTNGQRIPYI 82

Query: 173 IGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV 206
           I + G   +GK+T A+++     +      V  +
Sbjct: 83  ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.86
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.72
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.53
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.51
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.41
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.35
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.31
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.31
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.26
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.21
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.08
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.04
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.93
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.9
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.79
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.79
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.76
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.76
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.76
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.75
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.71
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.71
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.69
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.67
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.65
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.65
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.62
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.59
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.58
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.5
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.5
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.48
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.47
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.46
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.45
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.43
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.43
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.42
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.4
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.39
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.38
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.37
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.37
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.32
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.32
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.31
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.3
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.27
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.26
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.2
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.17
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.17
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.11
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.11
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.1
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.05
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.05
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.04
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.03
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.02
d1okkd2	207	GTPase domain of the signal recognition particle r	97.02
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.98
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.85
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.83
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	96.81
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.8
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.79
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.77
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.77
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.76
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.75
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.62
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.6
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.58
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.58
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.55
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.54
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.53
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.53
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.52
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.52
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.5
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	96.49
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.49
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.42
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.37
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.32
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.31
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.31
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.3
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.3
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.29
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.25
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.22
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.21
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.2
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.13
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.06
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.96
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.94
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.9
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.86
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.85
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	95.83
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.77
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.75
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.71
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.62
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.61
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.57
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.56
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.51
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.43
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.4
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.39
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.39
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.39
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.37
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.34
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.31
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.27
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.22
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.22
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.21
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.17
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.14
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.12
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.07
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.02
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.99
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.97
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.93
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.92
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.9
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.89
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.87
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.87
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.82
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.77
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.76
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.69
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.69
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.64
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.62
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.57
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.56
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.53
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.49
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.43
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.42
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.4
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.38
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.37
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.36
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.34
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.34
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.31
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.22
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.21
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.21
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.19
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.12
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.1
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.1
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.07
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.03
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.9
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.86
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.84
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.72
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.59
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	93.58
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.44
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.29
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.05
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.98
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.97
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	92.82
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.57
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.4
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.39
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.25
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	91.84
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.83
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.51
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.46
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	91.32
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.73
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.67
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	90.44
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.32
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.17
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.04
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.91
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	89.75
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	89.71
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	89.54
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.22
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.06
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	88.86
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	87.78
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	86.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	86.64
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.42
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	85.12
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	84.67
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.64
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.89
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.02
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	81.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.61
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.03

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=5.4e-22  Score=166.73  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=90.0

Q ss_pred             cccccchHHHHHHHHHHhC---CCCCcEEEEEcCCCCcHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS---NPNVDVIGLCGVGGIGKTTLAKIVCDQAK--KLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      ...++||+.++++|+++|.   +....+|+|+||||+||||||+.+|++..  ...+|++++|+++++.++...+...+.
T Consensus        19 ~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~   98 (277)
T d2a5yb3          19 QMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD   98 (277)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred             CCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHH
Confidence            3457899999999999884   45688999999999999999999999854  556899999999999998887776654


Q ss_pred             HHh---cCCC--------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          223 DQL---SLNI--------CEGSESERAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       223 ~~~---~~~~--------~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                      ..+   +...        ...........+.+.|.+ |||||||||||+..+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-kr~LlVLDDv~~~~~~  150 (277)
T d2a5yb3          99 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDR-PNTLFVFDDVVQEETI  150 (277)
T ss_dssp             HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTS-TTEEEEEEEECCHHHH
T ss_pred             HHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhcc-CCeeEecchhhHHhhh
Confidence            433   2210        111233345567888888 9999999999987544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.72  E-value=1.2e-07  Score=76.74  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             cccccchHHHHHHHHHHhC------CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALS------NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      +..++||+.+++.|.++|.      ......+.|+|+.|+||||+|+.+.+....... ...+|+..........+...+
T Consensus        15 p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~   93 (276)
T d1fnna2          15 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEI   93 (276)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccC-CcEEEecchhhhhhhhhhhhh
Confidence            3458999999999988874      234678999999999999999999998763222 245677777788888888888


Q ss_pred             HHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Q 045699          222 ADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIWTS  261 (266)
Q Consensus       222 ~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~  261 (266)
                      ....+....  ......+...+.+.+.. ....++++|++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  136 (276)
T d1fnna2          94 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL  136 (276)
T ss_dssp             HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred             HHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHh
Confidence            888776432  33455565666555543 25677778876653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.53  E-value=6.2e-08  Score=78.75  Aligned_cols=45  Identities=16%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.+.|+||+++++.|.+.    ..+++.|+|++|+|||+|++.+.+...
T Consensus        10 ~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          10 NRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             SGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             ChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            367899999999998764    347899999999999999999988754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.51  E-value=4.1e-07  Score=74.02  Aligned_cols=112  Identities=20%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             cccccchHHHHHHHHHHhC----C-C---C-CcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCH
Q 045699          148 YEAFESRKSILNDALDALS----N-P---N-VDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDV  214 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~----~-~---~-~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~  214 (266)
                      +..+.||+.+++.|.+++.    . .   + ..++.++|+.|+|||++++.+.+.....    .......++.+....+.
T Consensus        15 P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   94 (287)
T d1w5sa2          15 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL   94 (287)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccch
Confidence            4568899999999887652    1 1   1 2345667999999999999999885321    12245667787888888


Q ss_pred             HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          215 KRIQGDVADQLSLNIC--EGSESERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       215 ~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                      ......+...++....  ..........+...... +...++++|++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d  142 (287)
T d1w5sa2          95 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQ  142 (287)
T ss_dssp             HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTH
T ss_pred             hhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEE
Confidence            8888888888766432  34455555556555542 367777888764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=3.9e-07  Score=72.28  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             ccCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          144 CSEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       144 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|....+++|.+..++.|.+|+.+.....+-++|+.|+||||+|+.+.+...
T Consensus        10 rP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          10 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            3445678899999999999999887777788999999999999999988754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.6e-06  Score=69.20  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccc---c-CCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045699          149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL---K-VCDEVVFVEVSRTPDVKRIQGDVADQ  224 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---~-~f~~~~wv~v~~~~~~~~~~~~i~~~  224 (266)
                      +.++||++++++++..|....-.-+.+||++|+|||+++..+.......   . ..+..+|.--.     ..++      
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~-----~~li------   86 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI-----GSLL------   86 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC-----C---------
T ss_pred             CcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee-----chHh------
Confidence            4578999999999999987667778899999999999988887764321   1 23455654211     1111      


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCC
Q 045699          225 LSLNICEGSESERAMMLCGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~~L~~~kr~LlvlDDvw~~~  262 (266)
                       .....-...++....+.+.+...++.++++||+..-.
T Consensus        87 -ag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~  123 (268)
T d1r6bx2          87 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII  123 (268)
T ss_dssp             -CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTT
T ss_pred             -ccCccchhHHHHHHHHHHHhhccCCceEEecchHHHh
Confidence             0000122344555555555554377888999987654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=6.7e-07  Score=70.86  Aligned_cols=51  Identities=12%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....+++|.+..++.|.+|+.......+-++|+.|+||||+|+.+.+...
T Consensus        10 P~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          10 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            344677999999999999999877777788999999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.31  E-value=3.7e-07  Score=72.65  Aligned_cols=51  Identities=16%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |....+++|.+..++.|..|+.......+-++|+.|+||||+|+.+.+...
T Consensus        20 P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          20 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            345778999999999999999877788899999999999999999988753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=6.5e-07  Score=71.22  Aligned_cols=73  Identities=11%  Similarity=0.164  Sum_probs=51.8

Q ss_pred             cCCcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CCCeEEEEEeCCCCCHHHH
Q 045699          145 SEGYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VCDEVVFVEVSRTPDVKRI  217 (266)
Q Consensus       145 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f~~~~wv~v~~~~~~~~~  217 (266)
                      |....+++|.+..++.|.+|+.......+.++|+.|+||||+++.+.+...... .+.....+..+.......+
T Consensus         8 P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~   81 (237)
T d1sxjd2           8 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV   81 (237)
T ss_dssp             CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHH
Confidence            334667889888899999999887777789999999999999999988743211 1223344455555444433

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4e-06  Score=64.62  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             ccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045699          149 EAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDVKRIQGDVADQ  224 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~  224 (266)
                      ..++||+.++++++..|...+-.-+.+||.+|+|||+++..+.......    ...+..+|.-     +...++.     
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~LiA-----   91 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGALVA-----   91 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHHHT-----
T ss_pred             CCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHHhc-----
Confidence            4578999999999999987777788999999999999988887764311    2234556532     3333221     


Q ss_pred             hcCCCCCCCHHHHHHHHHHHH-hcCCeEEEEEeCCCCCC
Q 045699          225 LSLNICEGSESERAMMLCGQL-KKGKKILFVLDNIWTSL  262 (266)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~~L-~~~kr~LlvlDDvw~~~  262 (266)
                       +.. .-...++....+.+.+ ....+.+|++||+..-.
T Consensus        92 -g~~-~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~  128 (195)
T d1jbka_          92 -GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMV  128 (195)
T ss_dssp             -TTC-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGT
T ss_pred             -cCC-ccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHh
Confidence             000 0011233333344443 33247899999986543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=6.1e-06  Score=70.59  Aligned_cols=103  Identities=13%  Similarity=0.185  Sum_probs=58.7

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc----cccCCCeEEEEEeCCCCCHHHHHHHHHH
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK----KLKVCDEVVFVEVSRTPDVKRIQGDVAD  223 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~----~~~~f~~~~wv~v~~~~~~~~~~~~i~~  223 (266)
                      .+.++||+.+++.+++.|...+-.-+.+||.+|+|||+++..+.....    ...-.+.++|.--.     ..++.    
T Consensus        21 ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~-----~~l~a----   91 (387)
T d1qvra2          21 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM-----GSLLA----   91 (387)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred             CCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH-----hhhhc----
Confidence            345789999999999999766666678899999999998765554421    12234566665321     11110    


Q ss_pred             HhcCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCCC
Q 045699          224 QLSLNICEGSESERAMMLCGQLKK-GKKILFVLDNIWTSL  262 (266)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~~~L~~-~kr~LlvlDDvw~~~  262 (266)
                        |.. .-...++....+...+.. ..+++|++|++.+.+
T Consensus        92 --g~~-~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~  128 (387)
T d1qvra2          92 --GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVV  128 (387)
T ss_dssp             ---------CHHHHHHHHHHHHHTTCSSEEEEECCC----
T ss_pred             --ccC-cchhHHHHHHHHHHHhccCCCceEEEeccHHHHh
Confidence              000 012333444444444433 147889999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=9.5e-06  Score=64.50  Aligned_cols=49  Identities=20%  Similarity=0.334  Sum_probs=39.6

Q ss_pred             CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++++|.+..++.|..++.     ....+.+-++|+.|+||||+|+.+.+...
T Consensus         7 ~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2           7 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46678999888888877763     23467788999999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=3.2e-05  Score=61.51  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=41.3

Q ss_pred             CCcccccchHHHHHHHHHHhCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          146 EGYEAFESRKSILNDALDALSNPNV-DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ....+++|.+..++.|.+++...++ ..+-++|+.|+||||+|+.+.+...
T Consensus         9 ~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_           9 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3467889999999999999876554 4578999999999999999877653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.2e-05  Score=63.32  Aligned_cols=48  Identities=23%  Similarity=0.294  Sum_probs=35.6

Q ss_pred             cccccchHHHHHHHHH---HhCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALD---ALSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++.|.+..++.|.+   ++..         ...+-+.++|+.|+|||++|+.+.+...
T Consensus        11 ~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            4577888777766644   3321         2246688999999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=2.2e-05  Score=62.15  Aligned_cols=49  Identities=29%  Similarity=0.429  Sum_probs=40.5

Q ss_pred             CcccccchHHHHHHHHHHhC-----CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          147 GYEAFESRKSILNDALDALS-----NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..++++|.+..++.|..|+.     ......+.++|++|+||||+|+.+.+...
T Consensus         7 ~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2           7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             cHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            46788999999988888874     33456788999999999999999998754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=3.7e-05  Score=61.59  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=34.9

Q ss_pred             cccccchHHHHHHHHHH---hCC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          148 YEAFESRKSILNDALDA---LSN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++++|.+..++.|.+.   +..         ...+-+.++|+.|+|||+||+.+.+...
T Consensus         8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_           8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcC
Confidence            45678877766555443   221         2245689999999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.79  E-value=3e-05  Score=61.63  Aligned_cols=90  Identities=24%  Similarity=0.277  Sum_probs=56.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE----------------EeCCCCC---------------------
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV----------------EVSRTPD---------------------  213 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------~v~~~~~---------------------  213 (266)
                      .+++|+|++|+|||||++.+..-.+..   ...+|+                .|.|.++                     
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            588999999999999999998764321   222222                1222211                     


Q ss_pred             -HHHHHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 -VKRIQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 -~~~~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                       ..+-..++++.++..      ....|..+. .-.+...|-. +.-+|+||+..+..|.
T Consensus       102 ~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~-~P~illlDEPts~LD~  159 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI-QPRLLLLDEPLSAVDL  159 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-CCSSBEEESTTSSCCH
T ss_pred             HHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc-cCCceEecCccccCCH
Confidence             123345566666552      224454443 3456777877 8889999999988764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.79  E-value=4.3e-05  Score=59.23  Aligned_cols=97  Identities=27%  Similarity=0.382  Sum_probs=55.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-----------CC-CeEEEEE----eCCCCCHHHHHHHH----------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-----------VC-DEVVFVE----VSRTPDVKRIQGDV----------  221 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-----------~f-~~~~wv~----v~~~~~~~~~~~~i----------  221 (266)
                      +.-.+++|+|++|+|||||.+.+..-.+...           .+ ....|+.    +.+..+..+.+...          
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~  104 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK  104 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCH
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCH
Confidence            3567999999999999999999987543211           01 1223332    12233333333222          


Q ss_pred             ------HHHhcC-----CCCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCCC
Q 045699          222 ------ADQLSL-----NICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDLE  265 (266)
Q Consensus       222 ------~~~~~~-----~~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~~  265 (266)
                            ++.+..     .....|..+. .-.+...|-. .+=+++||++.+..|.+
T Consensus       105 ~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~-~~~llllDEPt~gLD~~  159 (200)
T d1sgwa_         105 NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV-NAEIYVLDDPVVAIDED  159 (200)
T ss_dssp             HHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTS-CCSEEEEESTTTTSCTT
T ss_pred             HHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhc-CCCEEEEcCcccccCHH
Confidence                  222221     1123454333 3445666666 78899999999888754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=3.4e-05  Score=61.49  Aligned_cols=66  Identities=21%  Similarity=0.186  Sum_probs=47.9

Q ss_pred             CCcccccchHHHHHHHHHHhCC-----------------CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          146 EGYEAFESRKSILNDALDALSN-----------------PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       146 ~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      ....+++|.+..++.|.+|+..                 ...+.+.++|+.|+||||+|+.+.+...     -...++..
T Consensus        11 ~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~-----~~~~~~~~   85 (253)
T d1sxja2          11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNA   85 (253)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECT
T ss_pred             CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH-----hhhhcccc
Confidence            3467889999989999888732                 2346899999999999999999998753     12445555


Q ss_pred             CCCCCHHH
Q 045699          209 SRTPDVKR  216 (266)
Q Consensus       209 ~~~~~~~~  216 (266)
                      +...+...
T Consensus        86 ~~~~~~~~   93 (253)
T d1sxja2          86 SDVRSKTL   93 (253)
T ss_dssp             TSCCCHHH
T ss_pred             ccchhhHH
Confidence            55444443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=6.9e-05  Score=59.48  Aligned_cols=93  Identities=15%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE----------------EeCCCC-------------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV----------------EVSRTP-------------------  212 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------~v~~~~-------------------  212 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+..   ...+++                .|.|.+                   
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~  106 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK  106 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHc
Confidence            356799999999999999999997654321   111111                122222                   


Q ss_pred             --C---HHHHHHHHHHHhcCC------CCCCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 --D---VKRIQGDVADQLSLN------ICEGSE-SERAMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 --~---~~~~~~~i~~~~~~~------~~~~~~-~~~~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                        +   ..+...++++.++..      ....|. ....-.|...|.. +.=+|+||+..+.+|.
T Consensus       107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~-~P~iLllDEPts~LD~  169 (239)
T d1v43a3         107 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV-EPDVLLMDEPLSNLDA  169 (239)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT-CCSEEEEESTTTTSCH
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc-CCCceeecCCcccCCH
Confidence              1   123334556666552      223342 2333456777777 8889999999988763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.76  E-value=9.8e-05  Score=58.63  Aligned_cols=95  Identities=22%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC----------------eEEEEEeCCCCC----------------
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD----------------EVVFVEVSRTPD----------------  213 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~----------------~~~wv~v~~~~~----------------  213 (266)
                      .-.+++|+|++|+|||||++.++.-.+...   .|+                .+-.-.|.|+++                
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~  107 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK  107 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhhhhHhhhhhHH
Confidence            467999999999999999999977543210   000                001112334321                


Q ss_pred             -----HH---HHHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 -----VK---RIQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 -----~~---~~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                           ..   +-..++++.++..      ....|..+. .-.+...|.. +.=+|+||+..+.+|.
T Consensus       108 ~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~-~P~iLllDEPt~~LD~  172 (240)
T d1g2912         108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR-KPQVFLMDEPLSNLDA  172 (240)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT-CCSEEEEECTTTTSCH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEecCCCcccCH
Confidence                 11   2233455555441      224554443 3457778887 8889999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=8.1e-05  Score=59.89  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=34.5

Q ss_pred             ccccchHHHHHHHHHHh----CC---------CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          149 EAFESRKSILNDALDAL----SN---------PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       149 ~~~~gr~~~~~~l~~~l----~~---------~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++.|.+..++.|.+.+    ..         ...+-+.++|+.|+|||+||+.+.+...
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhC
Confidence            45677777766665542    21         2345688999999999999999999754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=4.2e-05  Score=61.93  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+-|.++|+.|+|||+||+.+.+...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            356788999999999999999999865

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.71  E-value=0.00012  Score=57.66  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            456899999999999999999986643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00014  Score=57.77  Aligned_cols=96  Identities=20%  Similarity=0.287  Sum_probs=57.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-eEE--------------EEEeCCCCC----------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-EVV--------------FVEVSRTPD----------------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-~~~--------------wv~v~~~~~----------------  213 (266)
                      ..-.+++|+|++|+|||||++.+..-.+...   .|+ .-+              --.|.|+++                
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~  108 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE  108 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHH
Confidence            3568999999999999999999976543211   010 000              012222221                


Q ss_pred             --------HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 --------VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 --------~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                              ..+...++++.++..      ....|..+.+ -.|...|.. +.=+|++|+..+..|.
T Consensus       109 ~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~-~P~lLllDEPt~~LD~  173 (240)
T d3dhwc1         109 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS-NPKVLLCDEATSALDP  173 (240)
T ss_dssp             TTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT-CCSEEEEESGGGSSCH
T ss_pred             HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc-CCCeEEeccccccCCH
Confidence                    123344566666552      2245654443 456777887 8899999999887663

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=6e-05  Score=59.57  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||.+.+..-.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356799999999999999999996654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.65  E-value=2.9e-05  Score=62.17  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+-|.++|+.|+|||++|+.+.+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            356688999999999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=2.1e-05  Score=62.71  Aligned_cols=48  Identities=19%  Similarity=0.253  Sum_probs=39.5

Q ss_pred             CcccccchHHHHHHHHHHhCCC-CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          147 GYEAFESRKSILNDALDALSNP-NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~-~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++|.+..++.|.+++... ...-+.++|++|+||||+|+.+.+..
T Consensus         9 ~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           9 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4667999999888888887543 34557899999999999999998874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=0.00029  Score=56.85  Aligned_cols=88  Identities=19%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l  241 (266)
                      +.-++.-|+|+.|+||||||-.+......  .-..++|+.....++++.     +++++.+.+      ..+.++....+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~--~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~  130 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIA  130 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHH--TTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhc--CCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHH
Confidence            35689999999999999999887776542  334789999999998765     556676432      33566666666


Q ss_pred             HHHHhcCCeEEEEEeCCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~~  262 (266)
                      ...+..++.-|||+|.+-...
T Consensus       131 ~~l~~~~~~~liIiDSi~al~  151 (269)
T d1mo6a1         131 DMLIRSGALDIVVIDSVAALV  151 (269)
T ss_dssp             HHHHHTTCEEEEEEECSTTCC
T ss_pred             HHHHhcCCCCEEEEecccccc
Confidence            666666568899999886543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.59  E-value=0.0002  Score=56.38  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE----------------EeCCCC------C------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV----------------EVSRTP------D------------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv----------------~v~~~~------~------------  213 (266)
                      ..-.+++|+|++|+|||||.+.+..-....   ...+++                .|.|.+      +            
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~  100 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK  100 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHHhhc
Confidence            456799999999999999999997754321   111211                222222      1            


Q ss_pred             ---HHHHHHHHHHHhcCC------CCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          214 ---VKRIQGDVADQLSLN------ICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       214 ---~~~~~~~i~~~~~~~------~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                         ..+-..++++.++..      ....|..+. .-.|...|-. +.=+|+||+..+..|.
T Consensus       101 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~-~P~iLllDEPts~LD~  160 (229)
T d3d31a2         101 KIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT-NPKILLLDEPLSALDP  160 (229)
T ss_dssp             CCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS-CCSEEEEESSSTTSCH
T ss_pred             cccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhc-cCCceeecCCCcCCCH
Confidence               112233455555442      223454433 3456777887 8889999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.58  E-value=0.00014  Score=57.62  Aligned_cols=94  Identities=27%  Similarity=0.362  Sum_probs=58.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CCC-----------------eEEEEEeCCCC---------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VCD-----------------EVVFVEVSRTP---------------  212 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~v~~~~---------------  212 (266)
                      ..-.+++|+|++|+|||||++.+..-.+...   .|+                 .+.+  |.|.+               
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~--vfQ~~~L~p~ltv~eni~~~  106 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGM--VFQTWALYPNLTAFENIAFP  106 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEE--EETTSCCCTTSCHHHHHHGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceE--EeccccccccccHHHHhhhh
Confidence            3468999999999999999999977532210   010                 1112  22222               


Q ss_pred             ------C---HHHHHHHHHHHhcCC------CCCCCHHHHH-HHHHHHHhcCCeEEEEEeCCCCCCCC
Q 045699          213 ------D---VKRIQGDVADQLSLN------ICEGSESERA-MMLCGQLKKGKKILFVLDNIWTSLDL  264 (266)
Q Consensus       213 ------~---~~~~~~~i~~~~~~~------~~~~~~~~~~-~~l~~~L~~~kr~LlvlDDvw~~~~~  264 (266)
                            +   .++-..++++.++..      ....|..+.+ -.|...|-. +.-+|++|+.....|.
T Consensus       107 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~-~P~llllDEPt~~LD~  173 (242)
T d1oxxk2         107 LTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK-DPSLLLLDEPFSNLDA  173 (242)
T ss_dssp             GTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTTTSCG
T ss_pred             hHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhh-cccceeecCCccCCCH
Confidence                  1   122344566666652      2244544443 457788887 8999999999988775

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=0.00026  Score=56.13  Aligned_cols=93  Identities=19%  Similarity=0.313  Sum_probs=55.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhcccc---CC-------------CeEEEEEeCCCC------C------------
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK---VC-------------DEVVFVEVSRTP------D------------  213 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~f-------------~~~~wv~v~~~~------~------------  213 (266)
                      ..-.+++|+|++|+|||||.+.+..-.+...   .+             ....|+  ++..      +            
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~v--pq~~~~~~~ltv~e~l~~~~~~~  103 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL--PEEAGAYRNMQGIEYLRFVAGFY  103 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE--CTTCCCCTTSBHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEe--eeccccCCCccHHHHHHHHHHhc
Confidence            3567999999999999999999976543210   00             112232  3321      1            


Q ss_pred             ------HHHHHHHHHHHhcC------CCCCCCHHHH-HHHHHHHHhcCCeEEEEEeCCCCCCC
Q 045699          214 ------VKRIQGDVADQLSL------NICEGSESER-AMMLCGQLKKGKKILFVLDNIWTSLD  263 (266)
Q Consensus       214 ------~~~~~~~i~~~~~~------~~~~~~~~~~-~~~l~~~L~~~kr~LlvlDDvw~~~~  263 (266)
                            ..+....+++.++.      .....|..+. .-.+...|.. +.=+|+||++.+-.|
T Consensus       104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~-~p~illLDEPt~gLD  165 (238)
T d1vpla_         104 ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV-NPRLAILDEPTSGLD  165 (238)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT-CCSEEEEESTTTTCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhc-CCCEEEecCCCCCCC
Confidence                  11223344444443      2234554333 3456777777 888999999988776

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00046  Score=53.54  Aligned_cols=59  Identities=20%  Similarity=0.163  Sum_probs=36.0

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCH--HHHHHHHHHHhcCC
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDV--KRIQGDVADQLSLN  228 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~--~~~~~~i~~~~~~~  228 (266)
                      .....||.++|+.|+||||.+-.+....+.   ....+.+-....+..  .+-++...+.++.+
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   66 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP   66 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccccchhhhhhhhhhcCCc
Confidence            345789999999999998755555555542   223454544455544  34455556666553

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.4e-05  Score=58.15  Aligned_cols=26  Identities=27%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|++|+|+.|+|||||++.+.+...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999988654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.50  E-value=2.8e-05  Score=58.51  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|.|.|+.|+||||||+.+.....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999988753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=8.8e-05  Score=56.34  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=25.9

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+.-+|+|.|..|+||||||+.+.....
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345667999999999999999999988765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=2e-05  Score=65.36  Aligned_cols=46  Identities=22%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             cccchHHHHHHHHHHh----C----------CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          150 AFESRKSILNDALDAL----S----------NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l----~----------~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.++.++.+...+    .          +...+-+.++||.|+|||.||+.+.+...
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            3567777776665433    0          11356788999999999999999998753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00019  Score=58.46  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..-.+++|+|++|+|||||++.+..-..
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4568999999999999999999987654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=3.1e-05  Score=56.95  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|.+.|+.|+||||+|+.+.....
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688889999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.46  E-value=0.00031  Score=56.35  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.+++|+|++|+|||||++.+..-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            356899999999999999999997643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.46  E-value=0.00034  Score=55.96  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||++.+..-.+
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            467999999999999999999987643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00026  Score=56.62  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-..++|+|++|+|||||++.+..-.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            456899999999999999999996543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=6e-05  Score=56.86  Aligned_cols=27  Identities=30%  Similarity=0.417  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+...+|.++|+.|+||||+|+.+...
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999988654

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.43  E-value=0.00055  Score=55.13  Aligned_cols=88  Identities=22%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMML  241 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l  241 (266)
                      +..++.-|+|+.|+||||||..+.......  =..++|+.....+++.     +++++|.+.+      ..+.++....+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~--g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~  127 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM  127 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhC--CCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHH
Confidence            356799999999999999999988776522  2468899999999885     6777877432      33566666666


Q ss_pred             HHHHhcCCeEEEEEeCCCCCC
Q 045699          242 CGQLKKGKKILFVLDNIWTSL  262 (266)
Q Consensus       242 ~~~L~~~kr~LlvlDDvw~~~  262 (266)
                      ...+++++.-|||+|-+-...
T Consensus       128 ~~l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         128 ELLVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHHHTTTCCSEEEEECTTTCC
T ss_pred             HHHHhcCCCcEEEEecccccc
Confidence            666665467799999886643

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=0.00051  Score=54.88  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-..++|+|++|+|||||++.+..-.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            356799999999999999999996543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.40  E-value=4.7e-05  Score=55.63  Aligned_cols=23  Identities=30%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ++|.|.|+.|+||||||+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999988664

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.00023  Score=54.39  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+..++|.|+|++|+||||+|+.+.....
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999999988653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.39  E-value=6.2e-05  Score=56.20  Aligned_cols=37  Identities=19%  Similarity=0.093  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV  206 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv  206 (266)
                      +..+|.|+|+.|+||||+|+.+....... +++...+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~-~~~~~~~~   41 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQ-GGRSVSLL   41 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCchhhh
Confidence            45789999999999999999999886532 34444443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.38  E-value=0.00072  Score=53.61  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-..++|+|++|+|||||++.+..-.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            456899999999999999999996543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00066  Score=53.79  Aligned_cols=27  Identities=37%  Similarity=0.570  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-..++|+|..|+|||||++.+..-.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            356899999999999999999997654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.37  E-value=0.00039  Score=54.07  Aligned_cols=37  Identities=30%  Similarity=0.357  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      ...+-|+|+.|+|||.|++.+++....  .....++++.
T Consensus        36 ~n~l~l~G~~G~GKTHLl~A~~~~~~~--~~~~~~~~~~   72 (213)
T d1l8qa2          36 YNPIFIYGSVGTGKTHLLQAAGNEAKK--RGYRVIYSSA   72 (213)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH--TTCCEEEEEH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHhcc--CccceEEech
Confidence            455889999999999999999998763  3334555543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.33  E-value=6.3e-05  Score=55.79  Aligned_cols=24  Identities=29%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.|.|+.|+||||+|+.+....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.6e-05  Score=56.65  Aligned_cols=25  Identities=36%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|.|.|++|+|||||++.+.....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5789999999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00064  Score=54.58  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNIC------EGSESERAMMLC  242 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~  242 (266)
                      .-+++-|+|+.|+|||||+-.+......  .-..++|+.....++...     ++.++.+.+      ..+.++....+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~--~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHc--CCCEEEEEccccccCHHH-----HHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            4579999999999999999998887652  334688999998888753     566676432      234566666666


Q ss_pred             HHHhcCCeEEEEEeCCCCC
Q 045699          243 GQLKKGKKILFVLDNIWTS  261 (266)
Q Consensus       243 ~~L~~~kr~LlvlDDvw~~  261 (266)
                      ...+.++.-|||+|-+-..
T Consensus       126 ~l~~~~~~~liViDSi~al  144 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVAAL  144 (263)
T ss_dssp             HHHHHTCCSEEEEECGGGC
T ss_pred             HHHhcCCCCEEEEECcccc
Confidence            6666535568999987543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.31  E-value=8.4e-05  Score=56.79  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=25.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .....+|.|+|++|+||||+|+.+.+...
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35678999999999999999999988653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.30  E-value=6.7e-05  Score=55.72  Aligned_cols=26  Identities=38%  Similarity=0.524  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..|.|.|+.|+||||+|+.+.....
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35577999999999999999987653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.0012  Score=53.13  Aligned_cols=98  Identities=20%  Similarity=0.334  Sum_probs=63.8

Q ss_pred             HHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-HHHHHHHHHHHhcC------------
Q 045699          162 LDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD-VKRIQGDVADQLSL------------  227 (266)
Q Consensus       162 ~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~-~~~~~~~i~~~~~~------------  227 (266)
                      ++.+.. .+-..++|+|..|+|||+|+..+.++... .+=++++++.+.+... ..++.+++.+.--.            
T Consensus        59 ID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~-~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~tvvv  137 (276)
T d2jdid3          59 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALV  137 (276)
T ss_dssp             HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEE
T ss_pred             eeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHh-hCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceEEEE
Confidence            444432 34577999999999999999998877432 3446788999987643 45666666654210            


Q ss_pred             -CCCCCC-HH-----HHHHHHHHHHh-c-CCeEEEEEeCCCC
Q 045699          228 -NICEGS-ES-----ERAMMLCGQLK-K-GKKILFVLDNIWT  260 (266)
Q Consensus       228 -~~~~~~-~~-----~~~~~l~~~L~-~-~kr~LlvlDDvw~  260 (266)
                       .....+ ..     .....+.++++ . |+..|+++||+..
T Consensus       138 ~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr  179 (276)
T d2jdid3         138 YGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  179 (276)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhH
Confidence             111222 11     22345678886 3 6999999999853

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.27  E-value=7.9e-05  Score=55.83  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -|+|+|++|+|||||++.+.....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCC
Confidence            389999999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00011  Score=54.50  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...+++.|.|+.|+||||+|+.+.....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4578999999999999999999988753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=0.00012  Score=54.43  Aligned_cols=25  Identities=32%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++++|+|..|+|||||+..+....+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999988765

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.20  E-value=0.00011  Score=55.03  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++|.|.|+.|+||||+++.+.....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999988765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=55.80  Aligned_cols=27  Identities=26%  Similarity=0.290  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+|.++|+.|+||||+|+.+.....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            457889999999999999999988764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.17  E-value=0.00014  Score=54.05  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++...|.|.|+.|+||||+|+.+....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            345679999999999999999998864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.15  E-value=0.0013  Score=51.47  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCC--------------C--CCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLN--------------I--CEG  232 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~--------------~--~~~  232 (266)
                      ...++.|+|.+|+|||+|+..+..+..  .....++|++...+  ...+.+. +..++..              .  ...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~e~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES--RAQLLRN-AYSWGMDFEEMERQNLLKIVCAYPESA   99 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC--HHHHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhccccceeeccCC--HHHHHHH-HHHcCCChHHHhhcCceEEEEeecchh
Confidence            568999999999999999999988864  45667888876543  3333322 2222221              0  123


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEeCC
Q 045699          233 SESERAMMLCGQLKKGKKILFVLDNI  258 (266)
Q Consensus       233 ~~~~~~~~l~~~L~~~kr~LlvlDDv  258 (266)
                      ...+....+...+...+.-++|+|.+
T Consensus       100 ~~~~~~~~i~~~i~~~~~~~vviDs~  125 (242)
T d1tf7a2         100 GLEDHLQIIKSEINDFKPARIAIDSL  125 (242)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECH
T ss_pred             hHHHHHHHHHHHHHhcCCceeeeecc
Confidence            34555666666666646667888875

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.11  E-value=0.00016  Score=53.66  Aligned_cols=26  Identities=19%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++|.|.|+.|+||||+|+.+.+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999988753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.11  E-value=0.00014  Score=54.06  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -|.|+||+|+||||+++.+.....
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            377889999999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.10  E-value=0.00037  Score=55.73  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-..++|+|..|+|||||++.+..-
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            45679999999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.05  E-value=0.00017  Score=53.97  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.|.++|+.|+||||+|+.+.....
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567889999999999999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00016  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      |.++||.|+||||+++.+.....
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45669999999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00082  Score=54.48  Aligned_cols=96  Identities=18%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             HHHHHhCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEE-EeCCCCCHHHHHHHHHHHhcC----CCCCCC
Q 045699          160 DALDALSN-PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFV-EVSRTPDVKRIQGDVADQLSL----NICEGS  233 (266)
Q Consensus       160 ~l~~~l~~-~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv-~v~~~~~~~~~~~~i~~~~~~----~~~~~~  233 (266)
                      ++++.+.. ..-..++|+|..|+|||+|+..+.+.... ++-++++.+ .+....  ++ ..++......    ...+.+
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~-~~~~~v~~~~~iger~--~e-v~~~~~~~~~~vv~~t~d~~  107 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERP--EE-VTEMQRLVKGEVVASTFDEP  107 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEEEECH--HH-HHHHHHHCSSEEEEEETTSC
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEeeceeH--HH-HHhHHhhcceEEEeccCCCc
Confidence            45666653 46789999999999999999999887653 244545444 333322  22 2233322222    111222


Q ss_pred             -H-----HHHHHHHHHHHhc-CCeEEEEEeCCC
Q 045699          234 -E-----SERAMMLCGQLKK-GKKILFVLDNIW  259 (266)
Q Consensus       234 -~-----~~~~~~l~~~L~~-~kr~LlvlDDvw  259 (266)
                       .     ......+.+++.+ |+..||++||+.
T Consensus       108 ~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dslt  140 (289)
T d1xpua3         108 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT  140 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccCceeecCcHH
Confidence             1     1234456677755 699999999974

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.03  E-value=0.00017  Score=53.57  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..++|.|.|+.|+||||+|+.+...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.02  E-value=0.00029  Score=56.23  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+.|.++|++|+||||||+.+.+...
T Consensus        30 ~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          30 ESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3456788999999999999999999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.02  E-value=0.0033  Score=48.37  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCC-CCCHHHHHHHHHHHhcCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSR-TPDVKRIQGDVADQLSLN  228 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~-~~~~~~~~~~i~~~~~~~  228 (266)
                      ++.++|.++|+.|+||||.+-.+......++  ..+..+++.. -....+-++...+.++.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g--~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLG--KKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEeccccccchhhHhhcccccCce
Confidence            4578999999999999875555555544222  3456665542 233444555555555553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.0038  Score=48.25  Aligned_cols=58  Identities=19%  Similarity=0.103  Sum_probs=34.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL  227 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~  227 (266)
                      ....||.++|+.|+||||.+-.+......+ . ..+..+++.-. ....+-++..++.++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~-~-~kV~lit~Dt~R~gA~eQL~~~a~~l~i   67 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-G-KSVVLAAADTFRAAAIEQLKIWGERVGA   67 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CceEEEeecccccchhHHHHHHhhhcCc
Confidence            457899999999999987544454444322 2 34555655422 2233445555566655

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.94  E-value=0.0029  Score=48.74  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--HHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPD--VKRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~--~~~~~~~i~~~~~~  227 (266)
                      +.+||.++|+.|+||||.+-.+......+ . ..+..+++ ..+.  ..+-++...+.++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~-g-~kV~lit~-Dt~R~gA~eQL~~~a~~l~v   66 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-G-RRPLLVAA-DTQRPAAREQLRLLGEKVGV   66 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT-T-CCEEEEEC-CSSCHHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHC-C-CcEEEEec-ccccchHHHHHHHHHHhcCC
Confidence            46899999999999987555554444422 2 23444444 3332  23344455555555

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.00027  Score=54.23  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..+|.++|.+|+||||||+.+.....
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999987654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00083  Score=55.42  Aligned_cols=44  Identities=25%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             ccchHHHHHHHHHHhC-------CC--CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          151 FESRKSILNDALDALS-------NP--NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.+..++.+...+.       ++  ...++..+|+.|+|||.||+.+....
T Consensus        25 v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          25 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            5666666666654431       22  24488899999999999999998875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00036  Score=53.98  Aligned_cols=26  Identities=35%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ..||+|.||+|+||||+|+.+.++..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46999999999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.83  E-value=0.00041  Score=52.02  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++|.|.|+.|+||||+++.+.....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6888999999999999999988875

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=96.81  E-value=0.0013  Score=53.05  Aligned_cols=90  Identities=11%  Similarity=0.123  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHH-HHHHHHHHHhcC-------CCCCCC------H
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVK-RIQGDVADQLSL-------NICEGS------E  234 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~-~~~~~i~~~~~~-------~~~~~~------~  234 (266)
                      .-..++|+|..|+|||+|+........  .+-+.++++.+....... ++..++.+.-..       ...+.+      .
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~~~~--~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a  143 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTILNQQ--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA  143 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHHTCC--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHhhhc--ccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHH
Confidence            456799999999999999987655433  344677888888764322 333333221100       111111      1


Q ss_pred             HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          235 SERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       235 ~~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                      ......+.+++++ ||+.|+++||+..
T Consensus       144 ~~~a~tiAEyfrd~G~~Vlll~Dsltr  170 (276)
T d1fx0a3         144 PYTGAALAEYFMYRERHTLIIYDDLSK  170 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHHcCCceeEEeeccHH
Confidence            2345566777765 6999999999753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00042  Score=53.53  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-+|+|.|..|+||||+|+.+.....
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999988764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.79  E-value=0.0038  Score=48.17  Aligned_cols=58  Identities=28%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCC-CCHHHHHHHHHHHhcC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRT-PDVKRIQGDVADQLSL  227 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~-~~~~~~~~~i~~~~~~  227 (266)
                      ....||.++|+.|+||||.+-.+....+.+ . ..+..+++.-. ....+-++...+.++.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g-~kV~lit~Dt~R~ga~eQL~~~a~~l~v   68 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKK-G-FKVGLVGADVYRPAALEQLQQLGQQIGV   68 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHT-T-CCEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-C-CceEEEEeeccccchhHHHHHhccccCc
Confidence            457899999999999987544444444422 2 23555554321 1122333444444444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00045  Score=52.48  Aligned_cols=25  Identities=24%  Similarity=0.220  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+|.|.|++|+||||.|+.+.+...
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.77  E-value=0.0013  Score=54.08  Aligned_cols=71  Identities=13%  Similarity=0.122  Sum_probs=42.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCe
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLSLNICEGSESERAMMLCGQLKKGKK  250 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~L~~~kr  250 (266)
                      .++.++|++|+|||.||+.+......+..|-   -+..+.-.+              .+ ....+.....+.+..+  +.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~---~~~~~~~~~--------------~~-~G~~e~~~~~~f~~a~--~~  183 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYA---TVRFGEPLS--------------GY-NTDFNVFVDDIARAML--QH  183 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCE---EEEBSCSST--------------TC-BCCHHHHHHHHHHHHH--HC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeE---EEEhhHhhh--------------cc-cchHHHHHHHHHHHHh--hc
Confidence            4566689999999999999999864222231   133332221              11 1223334444555444  35


Q ss_pred             EEEEEeCCCCC
Q 045699          251 ILFVLDNIWTS  261 (266)
Q Consensus       251 ~LlvlDDvw~~  261 (266)
                      ++|++|++..-
T Consensus       184 ~ilf~DEid~~  194 (321)
T d1w44a_         184 RVIVIDSLKNV  194 (321)
T ss_dssp             SEEEEECCTTT
T ss_pred             cEEEeehhhhh
Confidence            69999998764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0038  Score=48.37  Aligned_cols=90  Identities=13%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccC----CCeEEEEEeCCCCCHHHHHHHHHHHhcCC------------CC-C
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV----CDEVVFVEVSRTPDVKRIQGDVADQLSLN------------IC-E  231 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----f~~~~wv~v~~~~~~~~~~~~i~~~~~~~------------~~-~  231 (266)
                      ..+++-|.|.+|+|||||+..+.........    -...+|+.....++...+. .....++..            .. .
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  111 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA  111 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGH-HHHHHTCCCHHHHGGGEEEEECCST
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHH-HHHHhcCCchhhhhcceEEEeccch
Confidence            5679999999999999999888655432211    2467888887777654433 333333331            11 1


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 045699          232 GSESERAMMLCGQLKKGKKILFVLDNIW  259 (266)
Q Consensus       232 ~~~~~~~~~l~~~L~~~kr~LlvlDDvw  259 (266)
                      .........+...+......++++|.+-
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~ds~~  139 (251)
T d1szpa2         112 DHQLRLLDAAAQMMSESRFSLIVVDSVM  139 (251)
T ss_dssp             TTHHHHHHHTHHHHHHSCEEEEEEETGG
T ss_pred             hHHHHHHHHHHHHhhccccceeeehhhh
Confidence            2233333344444444367777787763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.75  E-value=0.00048  Score=52.20  Aligned_cols=26  Identities=15%  Similarity=0.181  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...|.|.|+.|+||||+|+.+.+...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            44678999999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.62  E-value=0.00063  Score=51.22  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ++|.|+|+.|+|||||++.+....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            578899999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00057  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|+|+.|+|||||++.+....
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            47799999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00063  Score=51.54  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.|.|+|+.|+|||||++.+.+..
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhC
Confidence            457899999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.00072  Score=50.57  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|++|+||||+|+.+.....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            377999999999999999987653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00069  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~  191 (266)
                      +.-+|||.|+.|+||||+|+.+-
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999873

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.00081  Score=51.11  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.++|.|.|++|+||||+|+.+.....
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            468999999999999999999988653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.54  E-value=0.00076  Score=52.18  Aligned_cols=25  Identities=32%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -+|+|-|++|+||||+|+.+.....
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999988765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.53  E-value=0.00094  Score=50.73  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +...|.|+|++|+||||+|+.+.....
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC
Confidence            455677889999999999999998653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.53  E-value=0.00063  Score=53.86  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .-.+++|+|++|+|||||.+.+..-.+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            567999999999999999999977543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.52  E-value=0.00082  Score=50.50  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|++|+||||+|+.+.....
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477999999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.011  Score=45.39  Aligned_cols=27  Identities=26%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      ...|+|-|+-|+||||+++.+.+....
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            357889999999999999999998763

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.50  E-value=0.00059  Score=56.60  Aligned_cols=47  Identities=17%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             CcccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          147 GYEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       147 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +...++|.+..+..|.-.+...+..-+.++|..|+||||||+.+..-
T Consensus         5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHh
Confidence            45678999888776653333333457899999999999999999753

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.49  E-value=0.0099  Score=47.87  Aligned_cols=99  Identities=14%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             HHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhcccc-CC-----CeEEEEEeCCCCCH-HHHHHHHHHHhcC------
Q 045699          162 LDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQAKKLK-VC-----DEVVFVEVSRTPDV-KRIQGDVADQLSL------  227 (266)
Q Consensus       162 ~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~f-----~~~~wv~v~~~~~~-~~~~~~i~~~~~~------  227 (266)
                      ++.+. =..-..++|+|..|+|||+|+..+........ ..     ..++++-+...... .++...+...-..      
T Consensus        59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~tvvv  138 (285)
T d2jdia3          59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVV  138 (285)
T ss_dssp             HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             EecccCccCCCEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccceEEE
Confidence            44443 24567899999999999999887765543211 11     23567777765533 3444444332111      


Q ss_pred             -CCCCCC-HH-----HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 045699          228 -NICEGS-ES-----ERAMMLCGQLKK-GKKILFVLDNIWT  260 (266)
Q Consensus       228 -~~~~~~-~~-----~~~~~l~~~L~~-~kr~LlvlDDvw~  260 (266)
                       .....+ ..     .....+.+++++ ||..|+++||+..
T Consensus       139 ~~ts~~~~~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsltr  179 (285)
T d2jdia3         139 SATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK  179 (285)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcChHH
Confidence             111222 11     122345666654 6999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00082  Score=50.41  Aligned_cols=24  Identities=29%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|+.|+||||+|+.+.....
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477899999999999999998764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.42  E-value=0.0011  Score=53.11  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAKK  196 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~~  196 (266)
                      +.|+|+|-||+||||+|-.+......
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~   27 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHA   27 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            68999999999999999999887753

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.37  E-value=0.0017  Score=50.14  Aligned_cols=29  Identities=34%  Similarity=0.276  Sum_probs=25.2

Q ss_pred             CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          166 SNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       166 ~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+..+|-+.|++|+||||||+.+....
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34677899999999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0011  Score=49.46  Aligned_cols=24  Identities=29%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|+.|+||||+|+.+.....
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999988754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0033  Score=50.22  Aligned_cols=38  Identities=32%  Similarity=0.509  Sum_probs=29.9

Q ss_pred             HHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          158 LNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       158 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+.+.+..+..++|.+.|-||+||||++-.+.....
T Consensus         8 ~~~~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2           8 LSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34455666677889999999999999998887766654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0013  Score=49.53  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+.|.|+|+.|+|||||++.+..+.
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            3679999999999999999998763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0025  Score=49.03  Aligned_cols=42  Identities=7%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             chHHHHHHHHHHhCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          153 SRKSILNDALDALSNPNVD-VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       153 gr~~~~~~l~~~l~~~~~~-vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+...+++.+.+...++. .+-++|+.|+||||+|+.+.+..
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence            3455677788777666654 48999999999999999988754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.00076  Score=53.07  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-.+++|+|++|+|||||.+.+..-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5689999999999999999999763

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0014  Score=49.17  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|.|.|+.|+||||+|+.+.....
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            355889999999999999988753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.27  E-value=0.0016  Score=49.10  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++| |+|++|+||||+|+.+.....
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHHT
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHhC
Confidence            4455 789999999999999987653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.25  E-value=0.0014  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ||.|.|+.|+|||||...+....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            79999999999999999997654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0035  Score=51.28  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ...-+|||.|..|+||||+|+.+.....
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            3467999999999999999999988764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0039  Score=50.07  Aligned_cols=29  Identities=21%  Similarity=0.282  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      ++..++|.+.|-||+||||+|-.+.....
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA   33 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLA   33 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHH
Confidence            34578899999999999998888877654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0045  Score=51.04  Aligned_cols=37  Identities=27%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             HHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          159 NDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       159 ~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .++++.+.  ..+..+|+|.|++|+|||||...+.....
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            34444432  35689999999999999999999876654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0019  Score=49.65  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..+|.|+|++|+|||||.+.+....
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4678899999999999999998863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.08  E-value=0.0012  Score=50.04  Aligned_cols=27  Identities=22%  Similarity=0.069  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+..+|+|-|.-|+||||+++.+....
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0032  Score=51.69  Aligned_cols=45  Identities=16%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             cccchHHHHHHHHHHhC-------C--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          150 AFESRKSILNDALDALS-------N--PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       150 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .++|.+..++.+...+.       +  ....++..+|+.|+|||.||+.+..-.
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhc
Confidence            35677777776655441       2  234588899999999999999998865

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.021  Score=43.24  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             HHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhccc--cCCCeEEEEEeC-CCCCHHHHHHHHHHHhcC
Q 045699          158 LNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKKL--KVCDEVVFVEVS-RTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       158 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~f~~~~wv~v~-~~~~~~~~~~~i~~~~~~  227 (266)
                      ++.+.+++.......+.++|++|+||||+|..+.+.....  .|.| ..++.-. ......++ +++.+.+..
T Consensus         3 ~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I~Id~I-R~i~~~~~~   73 (198)
T d2gnoa2           3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNY   73 (198)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTS
T ss_pred             HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEeCCcCCCCHHHH-HHHHHHHhh
Confidence            3445555556678999999999999999999998865421  2334 3334322 23344444 456666544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.96  E-value=0.0023  Score=46.26  Aligned_cols=22  Identities=27%  Similarity=0.256  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |.|+|..|+|||||.+.+..+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999987663

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.027  Score=43.06  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +.+.|+|-|+-|+||||+++.+.+..+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            356899999999999999999998765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.90  E-value=0.0067  Score=49.89  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             HHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          158 LNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       158 ~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+++.+.  ..+..+|+|.|++|+|||||.-.+....
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            344554442  4568999999999999999999887654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.86  E-value=0.017  Score=44.11  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHH-HHHhccccCCCeEEEEEeCC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIV-CDQAKKLKVCDEVVFVEVSR  210 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v-~~~~~~~~~f~~~~wv~v~~  210 (266)
                      ...++-|.|..|+|||+||..+ ++....  .-....|++...
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~~~~~--~~~~~~~~s~e~   65 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEE   65 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCcccccccC
Confidence            5689999999999999999765 443331  223455665543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.85  E-value=0.0022  Score=46.69  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .|.|+|.+|+|||||.+.+.++.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999987763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.85  E-value=0.0027  Score=47.93  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +++..|+|+|..|+|||||...+.+.
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            45678999999999999999999863

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.83  E-value=0.0028  Score=51.14  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|+|.|-||+||||+|-++.....
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA   27 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999998877654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.77  E-value=0.0051  Score=46.70  Aligned_cols=24  Identities=33%  Similarity=0.549  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .|+|-|+-|+||||+++.+.+...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999988765

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.75  E-value=0.0044  Score=45.75  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             HHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          161 ALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       161 l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +++.+. .++...|.++|.+|+|||||...+...
T Consensus         3 ~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344443 344566889999999999999988543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.71  E-value=0.0047  Score=45.49  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=25.7

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .++..++..... .|.|+|.+|+|||||...+.+.
T Consensus         5 ~~~~~~~~~k~~-kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           5 TRIWRLFNHQEH-KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHTTSCE-EEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHhCCCeE-EEEEECCCCCCHHHHHHHHhcC
Confidence            455666654444 5679999999999999988665

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.012  Score=45.78  Aligned_cols=49  Identities=22%  Similarity=0.288  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDVKRI  217 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~  217 (266)
                      .-.++-|.|++|+||||++.++.......    ......+|+......+...+
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            46799999999999999999887764321    12356788888777766543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.61  E-value=0.0018  Score=52.44  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..+|+|.|..|+||||+++.+.+...
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            456999999999999999998877654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0018  Score=50.46  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      .+.|+|-|+-|+||||+++.+....
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999988764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.56  E-value=0.038  Score=42.32  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=38.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccC--------------CCeEEEEEeCCCCCHHHHHHHHHHHhcC
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKV--------------CDEVVFVEVSRTPDVKRIQGDVADQLSL  227 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--------------f~~~~wv~v~~~~~~~~~~~~i~~~~~~  227 (266)
                      .-.++.|.|.+|+|||+++..+..+......              ...+.|+.....++.. ....+...+..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~-~~~~~~~~~~~  104 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE-RIMQMAEHAGI  104 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH-HHHHHHHHHTC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCHH-HHHHHHhhcch
Confidence            4589999999999999999999876533211              1246688776665544 34455555433

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0043  Score=48.39  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|+|=|+-|+||||+++.+.+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            57899999999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0037  Score=47.98  Aligned_cols=19  Identities=37%  Similarity=0.560  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v  190 (266)
                      +|||.|+.|+||||.|+.+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            8999999999999999866

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0041  Score=47.56  Aligned_cols=20  Identities=45%  Similarity=0.680  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v  190 (266)
                      .+|||.|..|+||||+|+.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.40  E-value=0.016  Score=42.31  Aligned_cols=30  Identities=27%  Similarity=0.216  Sum_probs=26.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL  197 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~  197 (266)
                      ....+|.+.|.=|+||||++|.+.....++
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            456799999999999999999999987654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.019  Score=43.65  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+.|+|-|+-|+||||+++.+.+...
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999988765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0041  Score=45.46  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999988775

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0062  Score=49.13  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccccCCC-eEEEEEeCC
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCD-EVVFVEVSR  210 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~-~~~wv~v~~  210 (266)
                      ...-+|||-|..|+|||||+..+......+..+. .++-+++..
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd   68 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   68 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC
Confidence            3456999999999999999999887754322222 344455444

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.37  E-value=0.081  Score=41.61  Aligned_cols=50  Identities=20%  Similarity=0.195  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVA  222 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~  222 (266)
                      -.++.|.|.+|+||||++..+..+...... ..+++++...  +..++...++
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-~~v~~~s~E~--~~~~~~~r~~   84 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLI   84 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcc-cceeEeeecc--chhhHHhHHH
Confidence            468889999999999999888765432222 3455555543  3444444444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.061  Score=42.23  Aligned_cols=25  Identities=36%  Similarity=0.376  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -.+..|+|.+|+|||||+-.+.-..
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578899999999999998887654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0045  Score=45.78  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||+..+.++
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3679999999999999988765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.31  E-value=0.0045  Score=45.22  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||.+.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3779999999999999998654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0053  Score=44.86  Aligned_cols=21  Identities=24%  Similarity=0.626  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||||+..+.+.
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999887764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.024  Score=43.80  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=39.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHHHhccc----cCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCDQAKKL----KVCDEVVFVEVSRTPDVKRIQGDVADQ  224 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~f~~~~wv~v~~~~~~~~~~~~i~~~  224 (266)
                      +.-.++.|.|.+|+|||++|.++.......    ..+..+.|+.....+.... ...+...
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   94 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR-LRDIADR   94 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH-HHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH-HHHHHhh
Confidence            356799999999999999999997654321    2456778888877766543 3334433

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.0049  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .|+|+|..|+|||||.+.+.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998653

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.22  E-value=0.0097  Score=45.81  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=27.6

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLC-GVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~-G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      .++|+|+ |-||+||||+|..+......  .-..++++-.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~--~g~~VlliD~   38 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQ--LGHDVTIVDA   38 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence            3789999 77999999999999887653  2235666644

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.21  E-value=0.0082  Score=47.37  Aligned_cols=44  Identities=14%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             ccchHHHHHHHHHHhC--CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          151 FESRKSILNDALDALS--NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       151 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      |+|.....+++.+.+.  ...-..|.|.|..|+|||++|+.++...
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            4454444444544442  1233457899999999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.21  E-value=0.012  Score=49.18  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ....+..+|+.|+|||-||+.+....
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc
Confidence            45679999999999999999997654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0052  Score=45.03  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|.+|+|||||.+.+.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.0053  Score=45.17  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.++
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988664

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0066  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..|.|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0055  Score=44.72  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.|+|..|+|||||++.+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0064  Score=43.68  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|.+|+|||||...+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0056  Score=45.10  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|.+|+|||||.+.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0059  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.|+|..|+|||||.+.+.++
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.037  Score=41.30  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLK----VCDEVVFVEVSRTPDVKR  216 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~f~~~~wv~v~~~~~~~~  216 (266)
                      .-.++.|.|++|+|||+||..+........    .+....++..........
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER   73 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHH
Confidence            467999999999999999999877643222    223455555555554443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0062  Score=44.64  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||...+.++
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0063  Score=44.84  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|.+|+|||||...+.++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999988654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0064  Score=44.67  Aligned_cols=21  Identities=29%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|.+|+|||||...+.++
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999887764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0064  Score=44.67  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||++.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCcCHHHHHHHHhCC
Confidence            3779999999999999988654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.94  E-value=0.0081  Score=45.61  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +-|.|+|.+|+|||||...+.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998775

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0068  Score=44.55  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||+|.+...++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            579999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.92  E-value=0.0066  Score=44.73  Aligned_cols=24  Identities=38%  Similarity=0.373  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ---|.++|.+|+|||||...+.+.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            345889999999999999988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0068  Score=44.36  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.0077  Score=44.00  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.+.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999988765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.90  E-value=0.0075  Score=44.66  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|+|+|..|+|||||...+.+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.89  E-value=0.009  Score=46.51  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+|+|.|.-|+||||.|+.+.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999999775

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0069  Score=44.56  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||.+.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999987765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0064  Score=45.37  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||+..+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4779999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0081  Score=44.11  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||.+.+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.007  Score=44.70  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||.+.+.+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999988765

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0069  Score=44.65  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...|+|+|..|+|||||...+.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0074  Score=44.62  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||+..+.+.
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988664

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.83  E-value=0.0066  Score=45.00  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .|+|+|..|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.83  E-value=0.025  Score=47.06  Aligned_cols=29  Identities=28%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+..+.+.++|++|+|||++|+.+.+...
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            35567899999999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0073  Score=44.19  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.++
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998775

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.0075  Score=44.45  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||+..+..+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0078  Score=44.03  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-|.|+|..|+|||||...+.+.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999987654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.76  E-value=0.0056  Score=45.44  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |+|+|..|+|||||...+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999998653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.73  E-value=0.0089  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||...+.+.
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            3789999999999999998765

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0051  Score=45.49  Aligned_cols=26  Identities=12%  Similarity=0.213  Sum_probs=22.2

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .++...|+|+|..++|||||.+.+..
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhC
Confidence            34577899999999999999998844

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0097  Score=43.52  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||+|.+.+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999998765

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.64  E-value=0.01  Score=43.26  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3678999999999999988654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0088  Score=44.22  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||+|...+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999887765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.56  E-value=0.0071  Score=45.05  Aligned_cols=22  Identities=36%  Similarity=0.652  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|+|+|..|+|||||...+.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.53  E-value=0.011  Score=43.84  Aligned_cols=22  Identities=32%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|-+|+|||+|.+....+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3679999999999999987655

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.1  Score=40.38  Aligned_cols=25  Identities=16%  Similarity=0.086  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +-+++.|.|+++.||||+.|.+.-.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            4578899999999999999998554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.0091  Score=46.26  Aligned_cols=25  Identities=36%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+.|..|.|+-|+|||||.+.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4678899999999999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.011  Score=43.37  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||+|...+.+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999987665

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.012  Score=43.06  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|.+|+|||+|+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999987664

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=0.012  Score=43.73  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.38  E-value=0.014  Score=44.89  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=26.6

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHHHhccccCCCeEEEEEe
Q 045699          170 VDVIGLC-GVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEV  208 (266)
Q Consensus       170 ~~vi~I~-G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v  208 (266)
                      .++|+|+ +-||+||||+|..+.......  -..++.+..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~--g~~VlliD~   39 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDG   39 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence            3689999 569999999999998776532  234555543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.37  E-value=0.011  Score=44.35  Aligned_cols=19  Identities=42%  Similarity=0.503  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v  190 (266)
                      -|.++|.+|+|||||....
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4679999999999999988

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.011  Score=44.16  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||+|.+.+.++
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999987765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.011  Score=43.88  Aligned_cols=22  Identities=27%  Similarity=0.296  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||+|.+.+.++
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999887765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.34  E-value=0.013  Score=43.10  Aligned_cols=26  Identities=27%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ...++ |.++|.+|+|||||.+.+.+.
T Consensus        10 ~k~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          10 NKEMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             TCCEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             CCeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            33445 669999999999999998654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.012  Score=43.56  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||||.+.+.+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988664

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.013  Score=43.18  Aligned_cols=21  Identities=43%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      -|.++|..|+|||||++.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.012  Score=43.09  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.++
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999998775

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.012  Score=42.40  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|+++|..|+|||||...+...
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.21  E-value=0.012  Score=43.57  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -.|+|+|..|+|||||...+.+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.013  Score=43.17  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.+.
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999877654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.12  E-value=0.015  Score=43.16  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||+|.+.+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999988765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.10  E-value=0.014  Score=42.80  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-|.|+|..|+|||||.+.+.++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35789999999999999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.016  Score=43.23  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|.+|+|||+|.+.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            679999999999999988655

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.07  E-value=0.015  Score=49.86  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      .+-|.++||.|+|||.||+.+..-..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.016  Score=42.92  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.++|..|+|||||...+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.03  Score=43.32  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             HHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          159 NDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       159 ~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +.|.++|.   -+...++|..|+|||||...+..+
T Consensus        87 ~~L~~~l~---~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          87 EELKEYLK---GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             HHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHHHHhc---CCeEEEECCCCCCHHHHHHhhcch
Confidence            45566664   357789999999999999999654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.0079  Score=44.27  Aligned_cols=21  Identities=43%  Similarity=0.525  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||||...+.++
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778999999999999987554

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.86  E-value=0.011  Score=43.77  Aligned_cols=27  Identities=26%  Similarity=0.182  Sum_probs=21.1

Q ss_pred             CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          167 NPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       167 ~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..+---|.++|..|+|||||.+.+.+.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            344455679999999999999988544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.021  Score=43.26  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=22.8

Q ss_pred             cEEEEEcCC-CCcHHHHHHHHHHHhccc
Q 045699          171 DVIGLCGVG-GIGKTTLAKIVCDQAKKL  197 (266)
Q Consensus       171 ~vi~I~G~~-G~GKTtLa~~v~~~~~~~  197 (266)
                      +.+-|.|-| |+||||++-.+......+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~   29 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAA   29 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence            567899998 999999999998887644

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.017  Score=43.19  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |.++|..|+|||+|...+.+.
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999998877654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.59  E-value=0.022  Score=43.79  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-|.++|.+|+|||||.+.....
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            45789999999999999987544

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.0061  Score=45.49  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +..|+|++|+||||+...++--
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.44  E-value=0.021  Score=45.63  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +++-|+|+|.+|.|||||+-.+...
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.29  E-value=0.013  Score=43.10  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=8.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|.|+|..|+|||||...+.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999766543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.05  E-value=0.033  Score=44.25  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ++.|+|+|..|.|||||+-.+..
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHH
Confidence            46799999999999999998843

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.98  E-value=0.27  Score=37.65  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +++.|.|++..||||+.|.+.-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47889999999999999988554

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.97  E-value=0.0082  Score=43.40  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHh
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      -|+++|..|+|||||...+.+..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.57  E-value=0.043  Score=42.29  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+|+|+|-.++|||||...+...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            56999999999999999988654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.40  E-value=0.039  Score=40.90  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-|.|.|.+|+||||||-.+..+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999987765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.39  E-value=0.03  Score=45.83  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +.|.|.|..|+||||+++.+.+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            448899999999999999998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.31  E-value=0.063  Score=43.10  Aligned_cols=21  Identities=19%  Similarity=0.278  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCcHHHH-HHHHH
Q 045699          171 DVIGLCGVGGIGKTTL-AKIVC  191 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtL-a~~v~  191 (266)
                      ..+.|.|.+|+||||. +..+.
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~   46 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIA   46 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHH
Confidence            3477889999999974 44443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.25  E-value=0.06  Score=42.31  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      ..-.|.++|..|+|||||...+++.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4457889999999999999999876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=91.84  E-value=0.045  Score=40.38  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .|+|+|..++|||||...+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.83  E-value=0.043  Score=40.73  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .-+.|.|..|+||||||-.+...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45788999999999999888764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.51  E-value=0.057  Score=39.73  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .=+.|.|..|+||||||-.+...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45789999999999999887765

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.46  E-value=0.11  Score=43.04  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=35.8

Q ss_pred             HHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCHHHHHHHH
Q 045699          158 LNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQAKK-LKVCDEVVFVEVSRTPDVKRIQGDV  221 (266)
Q Consensus       158 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~f~~~~wv~v~~~~~~~~~~~~i  221 (266)
                      +..+...+.   -++..|.|++|.||||++..+...... ...-...+.++.+..-....+...+
T Consensus       154 ~~A~~~al~---~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~  215 (359)
T d1w36d1         154 KVAAAVALT---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL  215 (359)
T ss_dssp             HHHHHHHHT---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHH
Confidence            344444443   468999999999999988766554321 1122346666665544444444443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=91.32  E-value=0.059  Score=44.17  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      +..|.|=|.-|+||||+++.+.+...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            45677889999999999999999765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.73  E-value=0.12  Score=40.89  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=15.2

Q ss_pred             cEEEEEcCCCCcHHHH-HHHH
Q 045699          171 DVIGLCGVGGIGKTTL-AKIV  190 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtL-a~~v  190 (266)
                      ..+.|.|.+|+||||. +..+
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHH
Confidence            4577999999999974 4444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.67  E-value=0.066  Score=42.54  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      -|||||++.+|||||...+-+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.44  E-value=0.051  Score=43.40  Aligned_cols=20  Identities=25%  Similarity=0.541  Sum_probs=17.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIV  190 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v  190 (266)
                      .+-.|+|++|+||||+..++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            46789999999999998877

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.32  E-value=0.078  Score=40.12  Aligned_cols=20  Identities=35%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~  191 (266)
                      -|+|+|-.+.|||||+.++.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            48999999999999998884

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.17  E-value=0.059  Score=44.05  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +..|.|=|.-|+||||+++.+.+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHh
Confidence            3468888999999999999997654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.04  E-value=0.14  Score=42.97  Aligned_cols=36  Identities=19%  Similarity=0.136  Sum_probs=27.5

Q ss_pred             HHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          158 LNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       158 ~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+.+ +.......|.|.|+.|+||||....+.+..
T Consensus       147 ~~~l~~-l~~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         147 HDNFRR-LIKRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             HHHHHH-HHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHH-HHhhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            344443 345567999999999999999888887764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.91  E-value=0.04  Score=42.71  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +...++|..|+|||||...+..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45568999999999999999765

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=3  Score=31.68  Aligned_cols=47  Identities=26%  Similarity=0.318  Sum_probs=36.5

Q ss_pred             cccccchHHHHHHHHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          148 YEAFESRKSILNDALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       148 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +..........+.+.+.+..+......++|-.|+|||-++-......
T Consensus        54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            33444566777888888888888899999999999999887765543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.11  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             HHHHhCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          161 ALDALSNPNVDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       161 l~~~l~~~~~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      +++.+ +..+.||+|+|+-+.|||||+..+++.
T Consensus        24 ~l~~~-~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          24 ILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHcC-CCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            34444 446899999999999999999999875

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.54  E-value=0.088  Score=42.21  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHH
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      --|||+|.+.+|||||...+-+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.22  E-value=0.16  Score=38.18  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             HHHHHHHhC-CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          158 LNDALDALS-NPNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       158 ~~~l~~~l~-~~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      +..+..+|. .++..-+.++|+++.|||++|..+.+-.
T Consensus        40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            455555664 3567899999999999999999887765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.06  E-value=0.084  Score=43.17  Aligned_cols=25  Identities=40%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHHHhc
Q 045699          171 DVIGLCGVGGIGKTTLAKIVCDQAK  195 (266)
Q Consensus       171 ~vi~I~G~~G~GKTtLa~~v~~~~~  195 (266)
                      -.|.|=|.-|+||||+++.+.+...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578889999999999999988754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.86  E-value=0.12  Score=42.83  Aligned_cols=22  Identities=18%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~  191 (266)
                      ..+-.|+|.+|+|||++..++.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3466799999999999999884

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.23  E-value=0.14  Score=42.06  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHH
Q 045699          168 PNVDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       168 ~~~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      ++++-|+|+|..|.|||||+-.+..
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHH
Confidence            4678899999999999999988853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.17  E-value=0.26  Score=34.06  Aligned_cols=52  Identities=15%  Similarity=0.074  Sum_probs=33.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHhccccCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQAKKLKVCDEVVFVEVSRTPDVKRIQGDVADQLS  226 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~f~~~~wv~v~~~~~~~~~~~~i~~~~~  226 (266)
                      +.++..|+++.|+|||+++-..+..      ...++.+.++...-..+..+.+.+.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~~   58 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHG   58 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHhh
Confidence            4678889999999999988665542      244566766655444455555554443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.78  E-value=0.14  Score=41.32  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 045699          173 IGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       173 i~I~G~~G~GKTtLa~~v~~~  193 (266)
                      |||+|.+.+|||||...+-+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=86.76  E-value=0.61  Score=36.55  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=28.8

Q ss_pred             HHHHHHHhCC--CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          158 LNDALDALSN--PNVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       158 ~~~l~~~l~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ...+..+|..  +....+-++|+|+.|||+++..+..-.
T Consensus        90 ~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3455666742  556788999999999999999997754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.64  E-value=0.17  Score=42.37  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .--|+|+|..|+|||||...+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45689999999999999999975

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=0.25  Score=41.32  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCDQ  193 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~~  193 (266)
                      .+.+.|+|..|+|||++++.+...
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            467899999999999988765544

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.12  E-value=0.29  Score=37.21  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVC  191 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~  191 (266)
                      -|+|+|-.+.|||||+..+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999997663

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=84.72  E-value=0.27  Score=36.70  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      -|+|+|-.+.|||||+..+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            389999999999999998754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.67  E-value=0.27  Score=36.35  Aligned_cols=21  Identities=43%  Similarity=0.534  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      -|+|+|-...|||||+..+-.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            579999999999999999954

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.64  E-value=0.3  Score=38.40  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 045699          169 NVDVIGLCGVGGIGKTTLAKIVCDQA  194 (266)
Q Consensus       169 ~~~vi~I~G~~G~GKTtLa~~v~~~~  194 (266)
                      ..-.++|+|++.+|||||...+.+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            34569999999999999999998753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.89  E-value=0.36  Score=36.05  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 045699          172 VIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       172 vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .|+|+|-...|||||+..+..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEEEccCCcHHHHHHHHHh
Confidence            599999999999999998854

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=0.44  Score=38.22  Aligned_cols=19  Identities=47%  Similarity=0.644  Sum_probs=16.3

Q ss_pred             CcEEEEEcCCCCcHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAK  188 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~  188 (266)
                      -.+..++|..|.|||||..
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            4677899999999999884

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=81.47  E-value=0.51  Score=35.85  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAKIVCD  192 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~~v~~  192 (266)
                      .-.|+|+|-...|||||+.++..
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHHH
Confidence            34578999999999999998854

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=80.61  E-value=0.47  Score=38.15  Aligned_cols=19  Identities=47%  Similarity=0.644  Sum_probs=16.5

Q ss_pred             CcEEEEEcCCCCcHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAK  188 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~  188 (266)
                      -.|...+|..|.|||||..
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            4678899999999999875

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.03  E-value=0.55  Score=37.78  Aligned_cols=19  Identities=47%  Similarity=0.639  Sum_probs=16.2

Q ss_pred             CcEEEEEcCCCCcHHHHHH
Q 045699          170 VDVIGLCGVGGIGKTTLAK  188 (266)
Q Consensus       170 ~~vi~I~G~~G~GKTtLa~  188 (266)
                      -.+...+|..|.|||||..
T Consensus        14 gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3567799999999999983