Citrus Sinensis ID: 045701

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MKLSRKVLRFILLLIYLKIHASVAQDYDEPKEEEPASPPPAVEECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
cccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEcEEEEEccccEEccccccccccccccEEcccccHHHHHHHHHccccccEEEEEEEEEEEEccccccccccccEEEcccccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEccccccccccccccEEEcccEEEEEEccEEEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccccEEcccccccccccccEEccccccccccccccEEEEEEEEEEEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEEEEccccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEccEEccccccEEEEEcccccHHHHHccccccccccccccEEEEEEEEEccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHccEEEEEEEEccccEcccccccccccccHEEEEEEEEcccccHcccEEEEEEEcccEEEEEcccEEEcccccccccccccEEEEcccHHHHHcHHHHccccHHHEEEEEEEEcccccccccccccccEEEcccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEccccccEccccHHccccccccccEccccccEEEEccccccccccEccccccccccEEccccccHHHcEEEEEEEEEcccccccccEEcccccccEcccccccccccccEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEcccccccccccHHHEcHHHHHHHHHHccccccccccccEcccccEEEcccccccEEccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
MKLSRKVLRFILLLIYLKIHASvaqdydepkeeepaspppaveecngiYVSYEflsrtkgyprvknttaqswtfnATATVVNTGADELKAWKIFIGFQHKEILVsasgavsldgesfpaavgngtylsgnpqadlktsidtagdFTQMQAkidlsgtqfgvklpavpmpktiklvndgyqcpaptrkktsmhicckknpklkakevktkflprqngdlsisYDVTQSYANNYLAQVTlenksplgrldhwnlTWEWMRGEFIYtmkgaytrnidysgclygpagtyyadmdfskvmncekrptisdlprerandtevgkipyccrngsllptimdpsqskSVFLVQVfklppdlnrtafyppekwkivgtlnpdykcgqpirvdptktpdpsglqATKSALASWQIVCnitkptkgksrccvsfsayynesvipcntcacgcpdtkkcnpeapalllpaeailvpfenRTIKAKAWAGmkkfhvprplpcgdncgvsinwhvstdykggwsARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASyllgetnetatamkvpgkqqsvltftksktpninvpggdgfpskvlfngeecalpkrlpiaegnrlHVNMVQVFVLTLCHFFAHQI
MKLSRKVLRFILLLIYLKIHASVAQDYDEPKEEEpaspppaveecNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPaptrkktsmhicckknpklkakevktkflprqngdlsiSYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKrptisdlprerandtevgkipYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCnitkptkgksrCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFtksktpninvpggDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
MKLSRKVLRFILLLIYLKIHASVAQDYDepkeeepaspppaveeCNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNpeapalllpaeailvpFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
*****KVLRFILLLIYLKIHASVA*******************ECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLS**********IDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEK**************TEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIR****************SALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNET***********************INVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFA***
***SRKVLRFILLLIYLKIHASV*******************EECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPD*****FYPPEKWKIVGTLNPDYKCGQPIR**************TKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPD*************************************FHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNE****MKV*GKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLP********VNMVQVFVLTLCHFFAHQI
MKLSRKVLRFILLLIYLKIHASVAQ***************AVEECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
*KLSRKVLRFILLLIYLKIHASVAQDYDEPKEEEPASPPPAVEECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
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iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLSRKVLRFILLLIYLKIHASVAQDYDEPKEEEPASPPPAVEECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMKVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHFFAHQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
Q9T045668 COBRA-like protein 11 OS= yes no 0.958 0.937 0.588 0.0
Q9LJU0672 COBRA-like protein 10 OS= no no 0.993 0.965 0.587 0.0
Q8GZ17661 COBRA-like protein 7 OS=A no no 0.903 0.892 0.561 0.0
Q9LIB6653 COBRA-like protein 8 OS=A no no 0.975 0.975 0.524 0.0
Q9FJ13663 COBRA-like protein 9 OS=A no no 0.897 0.883 0.539 0.0
Q9LFW3431 COBRA-like protein 4 OS=A no no 0.551 0.835 0.277 5e-32
Q60E70457 COBRA-like protein 3 OS=O no no 0.565 0.807 0.278 6e-32
Q7XR91439 COBRA-like protein 7 OS=O no no 0.560 0.833 0.262 4e-31
Q6Z4G7451 COBRA-like protein 6 OS=O no no 0.569 0.824 0.275 6e-30
Q94KT8456 Protein COBRA OS=Arabidop no no 0.557 0.798 0.268 6e-30
>sp|Q9T045|CBL11_ARATH COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2 Back     alignment and function desciption
 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/636 (58%), Positives = 472/636 (74%), Gaps = 10/636 (1%)

Query: 22  SVAQDYDEPKEEEPASPPPAVEECNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVV 81
           S+AQDYDEPK+++  +PPP +  CNG+Y+SY    R K YPR  N TAQ+W+F +TA +V
Sbjct: 27  SLAQDYDEPKKDD--TPPPGLARCNGVYMSYSSGGREKLYPRTTNATAQAWSFKSTAMIV 84

Query: 82  NTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDT 141
           NTG +E+K W++F+GF H+EI+VSA+GAVS DG+ FP    NGT   G+   DLKTSI T
Sbjct: 85  NTGIEEVKGWQMFVGFHHREIIVSATGAVSSDGD-FPVDATNGTTFIGSQNTDLKTSILT 143

Query: 142 AGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKL 201
           AGD+TQ+   I+++GT FG K  A PMPK+IKL NDG+QCPA T K  +M +CCK+NPK 
Sbjct: 144 AGDYTQISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQCPAATSKGGTMQVCCKRNPKF 203

Query: 202 KAKE-VKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGE 260
           KAKE VKTKF+PRQ+GDL+I YDV Q+YA++Y+AQVT++N SPLGRLDHWNLTWEWMRGE
Sbjct: 204 KAKEKVKTKFMPRQHGDLNIIYDVLQAYASSYMAQVTIDNTSPLGRLDHWNLTWEWMRGE 263

Query: 261 FIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKI 320
           FI++M+GAY    +   CL   AG +Y D+DFS+V NC+K+P I DLP ER +D   GK+
Sbjct: 264 FIHSMRGAYAAEKNTLECLSSKAGQFYGDLDFSQVANCQKKPIIKDLPAERKDDNVTGKL 323

Query: 321 PYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQP 380
           P+CC+NG+LLPT MDPS+SK++F +QV+K+PPD NRTAF+PP  WKI G +NP YKCG P
Sbjct: 324 PFCCKNGTLLPTHMDPSKSKAIFQLQVYKVPPDQNRTAFFPPRNWKIDGIVNPTYKCGPP 383

Query: 381 IRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCAC 440
           IRVD T  PDPSGLQAT  A+ASWQ++CNITKP    +RCCVSFSA+YN+S IPCNTCAC
Sbjct: 384 IRVDATPFPDPSGLQATTYAIASWQVICNITKPKPQAARCCVSFSAFYNDSAIPCNTCAC 443

Query: 441 GCP--DTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSI 498
           GC   DT  CN  A  LLLP + +LVPF+NRT+KAK WA  K    P+ LPC DNCG+S+
Sbjct: 444 GCKDIDTDTCNANARQLLLPTDTLLVPFDNRTLKAKVWAKQKHMAYPKKLPCPDNCGISL 503

Query: 499 NWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTI 558
           NWH+++DY  GWSARVTLFNW     E+WF A+ L KA LGYE  YSFNG+ +   N TI
Sbjct: 504 NWHLNSDYGNGWSARVTLFNWGNNAVEDWFGALDLGKAGLGYENIYSFNGSRVPPKNQTI 563

Query: 559 FFQGLAGASYLLGETNETATAM--KVPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNG 616
           FFQGL G +YL+G TN T  A   ++PGK QSV++F K    ++N+ GGDGFP +V FNG
Sbjct: 564 FFQGLPGMNYLIGITNGTNPARDPQIPGKMQSVISFKKKNLGSLNIIGGDGFPKRVFFNG 623

Query: 617 EECALPKRLP-IAEGNRLH-VNMVQVFVLTLCHFFA 650
           EEC LPK  P  + G RL  +  +   +L +  F A
Sbjct: 624 EECELPKYFPKKSSGMRLSGIRFLPSILLAITTFHA 659

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LJU0|CBL10_ARATH COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1 Back     alignment and function description
>sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LIB6|COBL8_ARATH COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ13|COBL9_ARATH COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFW3|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2 Back     alignment and function description
>sp|Q60E70|COBL3_ORYSJ COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1 Back     alignment and function description
>sp|Q7XR91|COBL7_ORYSJ COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z4G7|COBL6_ORYSJ COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1 Back     alignment and function description
>sp|Q94KT8|COBRA_ARATH Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
255569552662 Protein COBRA precursor, putative [Ricin 0.990 0.977 0.661 0.0
356540321651 PREDICTED: COBRA-like protein 10-like [G 0.931 0.933 0.658 0.0
357480749709 COBRA-like protein [Medicago truncatula] 0.955 0.880 0.631 0.0
225444365654 PREDICTED: COBRA-like protein 10 [Vitis 0.975 0.974 0.645 0.0
225461074655 PREDICTED: COBRA-like protein 10 [Vitis 0.995 0.992 0.629 0.0
297735966652 unnamed protein product [Vitis vinifera] 0.986 0.987 0.633 0.0
255563719649 Protein COBRA precursor, putative [Ricin 0.967 0.973 0.619 0.0
224115248647 predicted protein [Populus trichocarpa] 0.944 0.953 0.612 0.0
429326466663 COBRA-like protein [Populus tomentosa] 0.944 0.930 0.612 0.0
429326464664 COBRA-like protein [Populus tomentosa] 0.954 0.938 0.610 0.0
>gi|255569552|ref|XP_002525742.1| Protein COBRA precursor, putative [Ricinus communis] gi|223534956|gb|EEF36641.1| Protein COBRA precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/650 (66%), Positives = 521/650 (80%), Gaps = 3/650 (0%)

Query: 1   MKLSRKVLRFILLLIYLKIHASVAQDYDEPKEEEPASPPPAVEECNGIYVSYEFLSRTKG 60
           MK S + L F+L L    I+  +AQDYD  K    A  P A+E CNGI++SY+FLSRTK 
Sbjct: 1   MKFSWRELSFLLCLFPFTINFVLAQDYDGEKVPPAAPAP-AIESCNGIFLSYQFLSRTKE 59

Query: 61  YPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILVSASGAVSLDGESFPAA 120
           YPR+KN +AQSW+F + AT++NTG  EL+AWKIFIGFQH+EILVSASGAV +D + FPA 
Sbjct: 60  YPRLKNASAQSWSFKSVATILNTGTVELEAWKIFIGFQHREILVSASGAVLMDSKDFPAD 119

Query: 121 VGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLPAVPMPKTIKLVNDGYQ 180
           V NGTY SG+    LKT+IDTAGD  Q+QA+I++ GTQFGVK P VP+PKTIKL+  GY 
Sbjct: 120 VSNGTYFSGSSSPVLKTAIDTAGDLNQIQAQIEMLGTQFGVKPPGVPLPKTIKLITPGYT 179

Query: 181 CPAPTRKKTSMHICCKKNPKLKAKEVKTKFLPRQNGDLSISYDVTQSYANNYLAQVTLEN 240
           CP   + KTS+++CC K+ K KAK++KTKF+PRQ GDLSI++DVTQ+Y ++YLA VT+EN
Sbjct: 180 CPELKKLKTSIYVCCVKDKKYKAKDIKTKFIPRQKGDLSITWDVTQAYESSYLALVTMEN 239

Query: 241 KSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEK 300
            +PLGRLDHWNLTWEWMRGEFIY+MKGAYTR IDYS C+YG AG YY  +DFSKVMNC+K
Sbjct: 240 NNPLGRLDHWNLTWEWMRGEFIYSMKGAYTRIIDYSDCIYGAAGKYYGSLDFSKVMNCQK 299

Query: 301 RPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFY 360
           +P ISDLP  RANDTE+GKIP CCRNG+LLP  MDPSQSK+ F +QV+KLPPD+NRTA Y
Sbjct: 300 KPIISDLPPVRANDTEIGKIPNCCRNGTLLPKFMDPSQSKAAFQLQVYKLPPDMNRTALY 359

Query: 361 PPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCNITKPTKGKSRC 420
           PP+KW IVG LNP+YKCG PIRV PT  PDPSGLQ++  A+A+WQ+VCNITKP     +C
Sbjct: 360 PPQKWNIVGVLNPEYKCGAPIRVSPTAFPDPSGLQSSIMAIATWQVVCNITKPKTRSPKC 419

Query: 421 CVSFSAYYNESVIPCNTCACGCPDTKKCNPEAPALLLPAEAILVPFENRTIKAKAWAGMK 480
           CVSFSAYYN+SVIPCNTCACGC DT  C+P+APA+ LP+EA+LVPF NR+ KA AWA +K
Sbjct: 420 CVSFSAYYNDSVIPCNTCACGCQDTTNCDPDAPAMFLPSEALLVPFANRSTKAVAWARLK 479

Query: 481 KFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWERMNFENWFTAIQLKKAALGY 540
            F +P+PLPC DNCGVSINWH+STDYK GWSAR+TLFNW+  +FENWFTAIQLK+A+  Y
Sbjct: 480 HFKIPKPLPCSDNCGVSINWHISTDYKNGWSARITLFNWQDFSFENWFTAIQLKRASRSY 539

Query: 541 EKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNET--ATAMKVPGKQQSVLTFTKSKTP 598
           EK YSFNGT LR+ NNTIF QGL G +YL+GE N T   T  +VPGKQQ+V++FTK  +P
Sbjct: 540 EKAYSFNGTLLREHNNTIFLQGLVGLNYLVGEINGTHPRTDPRVPGKQQTVISFTKKFSP 599

Query: 599 NINVPGGDGFPSKVLFNGEECALPKRLPIAEGNRLHVNMVQVFVLTLCHF 648
            IN+  GDGFPS+VLFNGEEC LPKR+PIA GN  +V++VQ+       F
Sbjct: 600 GINIAKGDGFPSRVLFNGEECTLPKRIPIANGNNCNVDLVQLVFPVFVAF 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540321|ref|XP_003538638.1| PREDICTED: COBRA-like protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|357480749|ref|XP_003610660.1| COBRA-like protein [Medicago truncatula] gi|355511995|gb|AES93618.1| COBRA-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225444365|ref|XP_002264920.1| PREDICTED: COBRA-like protein 10 [Vitis vinifera] gi|302144075|emb|CBI23180.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461074|ref|XP_002279050.1| PREDICTED: COBRA-like protein 10 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735966|emb|CBI23940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563719|ref|XP_002522861.1| Protein COBRA precursor, putative [Ricinus communis] gi|223537945|gb|EEF39559.1| Protein COBRA precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115248|ref|XP_002316982.1| predicted protein [Populus trichocarpa] gi|222860047|gb|EEE97594.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|429326466|gb|AFZ78573.1| COBRA-like protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|429326464|gb|AFZ78572.1| COBRA-like protein [Populus tomentosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
TAIR|locus:2085785672 COBL10 "COBRA-like protein 10 0.926 0.900 0.594 3.6e-208
TAIR|locus:2136452668 COBL11 "COBRA-like protein 11 0.981 0.959 0.559 5.6e-203
TAIR|locus:2130100661 COBL7 "AT4G16120" [Arabidopsis 0.966 0.954 0.523 1e-187
TAIR|locus:2093673653 COBL8 "COBRA-like protein 8 pr 0.917 0.917 0.533 3.2e-184
TAIR|locus:2155889663 SHV2 "SHAVEN 2" [Arabidopsis t 0.897 0.883 0.527 8.1e-179
TAIR|locus:2076507452 COBL1 "COBRA-like protein 1 pr 0.425 0.615 0.276 2.4e-27
TAIR|locus:2024377454 COBL6 "AT1G09790" [Arabidopsis 0.321 0.462 0.296 7.7e-26
TAIR|locus:2173532456 COB "AT5G60920" [Arabidopsis t 0.496 0.710 0.271 4e-25
TAIR|locus:2143151431 IRX6 "IRREGULAR XYLEM 6" [Arab 0.528 0.800 0.256 1.5e-23
TAIR|locus:2086601441 COBL2 "AT3G29810" [Arabidopsis 0.343 0.507 0.273 5.2e-19
TAIR|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2013 (713.7 bits), Expect = 3.6e-208, P = 3.6e-208
 Identities = 364/612 (59%), Positives = 448/612 (73%)

Query:    45 CNGIYVSYEFLSRTKGYPRVKNTTAQSWTFNATATVVNTGADELKAWKIFIGFQHKEILV 104
             CNGI++SY F SR + YP VKN TAQSW F +TA +VN G +ELK W++FIGF+HKE++V
Sbjct:    58 CNGIFMSYNFGSREREYPHVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIV 117

Query:   105 SASGAVSLDGESFPAAVGNGTYLSGNPQADLKTSIDTAGDFTQMQAKIDLSGTQFGVKLP 164
             SA+GA  +DG+ +P    NGT   G+P  DLKTSI+TAGDFTQ+ A I+++GT FGV   
Sbjct:   118 SATGATPMDGD-YPLDASNGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKA 176

Query:   165 AVPMPKTIKLVNDGYQCPAPTRKKTSMHICCKKNPKLKAK-EVKTKFLPRQNGDLSISYD 223
               PMP+TIKL NDG++CPA  RK  SMH+CCK+NPK+K K  +KTKF PR+ GDL+I YD
Sbjct:   177 VTPMPRTIKLTNDGWECPAAKRKGGSMHVCCKRNPKIKNKIGLKTKFAPRRYGDLNIVYD 236

Query:   224 VTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPA 283
             V QS+ +NYLAQVT++N +PLGRLD WNLT+EWMRGEFI TM+GAYT   D S CLY  A
Sbjct:   237 VLQSFDSNYLAQVTIDNDNPLGRLDRWNLTFEWMRGEFINTMRGAYTHKKDPSECLYSKA 296

Query:   284 GTYYADMDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVF 343
             G YY D+DFS+VMNC+++P ISDLP E+  D   GK+P+CC+NG+LLP IMDPS+S+S+F
Sbjct:   297 GQYYKDLDFSQVMNCQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMF 356

Query:   344 LVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALAS 403
              +QVFKLPPDLNRTA YPP+ WKI G LNP YKCG P+RVDP++ PDPSGL A   A++S
Sbjct:   357 QLQVFKLPPDLNRTALYPPQHWKIDGVLNPQYKCGPPVRVDPSQFPDPSGLLAVTYAISS 416

Query:   404 WQIVCNITKPTKGKSRCCVSFSAYYNESVIPCNTCACGCPD--TKKCNXXXXXXXXXXXX 461
             WQ+VCNITKP    SRCCVSFSA+YN S +PCNTCACGC D  T  CN            
Sbjct:   417 WQVVCNITKPKAQASRCCVSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDA 476

Query:   462 XXXXFENRTIKAKAWAGMKKFHVPRPLPCGDNCGVSINWHVSTDYKGGWSARVTLFNWER 521
                 F+NRT+KAKAWA      VP+ LPC DNCGVSINWHVSTDYK GW+AR+T+FNW  
Sbjct:   477 LLVPFDNRTLKAKAWAKQNHMPVPKKLPCPDNCGVSINWHVSTDYKNGWTARLTVFNWRD 536

Query:   522 MNFENWFTAIQLKKAALGYEKFYSFNGTFLRQLNNTIFFQGLAGASYLLGETNETATAMK 581
               FE+WF AI + KA  GYE  YSFNGT +   N T+ FQGL G +YL+G+ N T     
Sbjct:   537 FAFEDWFVAIDMGKAGPGYENVYSFNGTRVPPSNRTVIFQGLPGMNYLVGQVNGTNPLRD 596

Query:   582 --VPGKQQSVLTFTKSKTPNINVPGGDGFPSKVLFNGEECALPKRLPI-AEGNRLHVNMV 638
               VPGKQQSV++FTK     +N+P GDGFP+K+ FNGEECALPK  P  + G+R  +++ 
Sbjct:   597 PPVPGKQQSVISFTKKNIKGLNIPEGDGFPTKLFFNGEECALPKHFPKKSSGHRRGISVS 656

Query:   639 QVFVLTLCHFFA 650
               FV      FA
Sbjct:   657 MSFVFATIAAFA 668
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2136452 COBL11 "COBRA-like protein 11 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093673 COBL8 "COBRA-like protein 8 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9T045CBL11_ARATHNo assigned EC number0.58800.95860.9371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
pfam04833169 pfam04833, COBRA, COBRA-like protein 1e-73
>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein Back     alignment and domain information 
 Score =  233 bits (597), Expect = 1e-73
 Identities = 80/183 (43%), Positives = 107/183 (58%), Gaps = 16/183 (8%)

Query: 232 YLAQVTLENKSPLGRLDH--WNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYAD 289
           Y+AQVT+EN  P   +D+  W L+WEW + E I++M+GAYT   +   C       +Y D
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYTT--EQGDC-----SKFYKD 53

Query: 290 MDFSKVMNCEKRPTISDLPRERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFK 349
            DF     C+KRPTI DLP     D ++     CC+NG LLP   DP++S S F + V K
Sbjct: 54  GDFPH--CCKKRPTIVDLPPGTPYDQQIAN---CCKNGVLLPRSQDPAKSVSAFQMSVGK 108

Query: 350 LPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTPDPSGLQATKSALASWQIVCN 409
            PPD NR    PP+ + I G  NP Y CG  +RV PT+ PDP G + T  ALA+WQ+ CN
Sbjct: 109 APPDTNRKTVRPPQNFTIKG-PNPGYTCGPAVRVSPTRFPDPDG-RRTTQALATWQVTCN 166

Query: 410 ITK 412
            ++
Sbjct: 167 YSQ 169

Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 100.0
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 95.17
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 95.02
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 85.1
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-79  Score=581.25  Aligned_cols=167  Identities=44%  Similarity=0.854  Sum_probs=158.9

Q ss_pred             eEEEEEEecCCccCCCC--CCeeeeeEcCCeeeEEecCcEEeeecCCCcccCCCCcccccCCCCccccccCCCeeeeCCC
Q 045701          232 YLAQVTLENKSPLGRLD--HWNLTWEWMRGEFIYTMKGAYTRNIDYSGCLYGPAGTYYADMDFSKVMNCEKRPTISDLPR  309 (653)
Q Consensus       232 Y~A~VTi~N~q~yrhId--gW~L~W~W~k~E~IwsM~GA~~te~DqgdCs~g~ag~~yk~~dfs~ph~C~k~P~IVDLpP  309 (653)
                      |+|+|||+|||+|||||  ||+|||+|+|+||||+|+|||++|  ||||+     +||+++  ++||||+|+|+||||||
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~td--qgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp   71 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTD--QGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP   71 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceecc--CCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence            99999999999999998  599999999999999999999995  69996     577775  56789999999999999


Q ss_pred             CCCCCccccCcCccccCCeeecCccCccCCeeeEEEEEeecCCCCCCCccCCCCCeEEcccCCCCcccCCCeeeCCCCCc
Q 045701          310 ERANDTEVGKIPYCCRNGSLLPTIMDPSQSKSVFLVQVFKLPPDLNRTAFYPPEKWKIVGTLNPDYKCGQPIRVDPTKTP  389 (653)
Q Consensus       310 ~~~~d~qvg~i~nCCr~GvL~~~~qDps~S~SsFQm~Vgk~p~~~NrT~v~pP~Nftl~gp~gPgYtCGpp~~V~PT~f~  389 (653)
                      |++||+|   |+||||||||+||+|||+||+|+|||+||++||++|++.++||+||+|++| ||||+||+|++|+||+|+
T Consensus        72 ~~~~n~q---i~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~-~pgYtCg~~~~V~pT~f~  147 (169)
T PF04833_consen   72 GTPYNQQ---IGNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGP-GPGYTCGPPKRVSPTVFP  147 (169)
T ss_pred             CCCCccc---cccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCC-CCCcCCCCcceeCCceee
Confidence            9999999   568999999999999999999999999999999988888999999999996 999999999999999999


Q ss_pred             CCCCCceeeEEEEEEeeeeeeec
Q 045701          390 DPSGLQATKSALASWQIVCNITK  412 (653)
Q Consensus       390 dpdgl~r~tqAl~TWqVtCnySq  412 (653)
                      |+|| ||+|||||||||||||||
T Consensus       148 ~~~g-~r~t~A~~TWqvtC~ysq  169 (169)
T PF04833_consen  148 DPDG-RRTTQALMTWQVTCNYSQ  169 (169)
T ss_pred             CCCC-CEEEEEEEEEeEEEEeeC
Confidence            9999 799999999999999997

The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 95.41
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 93.34
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 92.86
1e5b_A87 Xylanase D; hydrolase, xylan binding domain, beta- 92.08
2cwr_A103 Chitinase; chitin-binding domain, endoglucanase, h 91.28
1heh_C88 Endo-1,4-beta-xylanase D; hydrolase(xylan degradat 84.98
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 83.35
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 82.96
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
Probab=95.41  E-value=0.039  Score=48.90  Aligned_cols=54  Identities=22%  Similarity=0.423  Sum_probs=46.5

Q ss_pred             eEEEEEEEEeeCCCeEEEEEEecCCccCCCCCCeeeeeEcCCeeeEEecCcEEee
Q 045701          218 LSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRN  272 (653)
Q Consensus       218 iTI~wDV~q~~~dgY~A~VTi~N~q~yrhIdgW~L~W~W~k~E~IwsM~GA~~te  272 (653)
                      .++.|.|.+--.+||.|.|||.|.-- .-|++|+|+|++..++-|-++..|..+.
T Consensus         3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~p~g~~it~~Wna~~s~   56 (107)
T 3ndz_E            3 VEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA   56 (107)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred             cEEEEEEcccCCCCEEEEEEEEeCCC-CcccCcEEEEEcCCCCEEecccceEEEe
Confidence            47899998888999999999999743 3478999999999999999999997654
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A Back     alignment and structure
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A Back     alignment and structure
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C Back     alignment and structure
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 96.47
d1hehc_88 Endo-1,4-beta xylanase D, xylan binding domain, XB 93.74
d1e5ba_87 Endo-1,4-beta xylanase D, xylan binding domain, XB 92.16
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 87.03
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=96.47  E-value=0.0025  Score=54.68  Aligned_cols=56  Identities=21%  Similarity=0.378  Sum_probs=48.4

Q ss_pred             CCCeEEEEEEEEeeCCCeEEEEEEecCCccCCCCCCeeeeeEcCCeeeEEecCcEEee
Q 045701          215 NGDLSISYDVTQSYANNYLAQVTLENKSPLGRLDHWNLTWEWMRGEFIYTMKGAYTRN  272 (653)
Q Consensus       215 ~GniTI~wDV~q~~~dgY~A~VTi~N~q~yrhIdgW~L~W~W~k~E~IwsM~GA~~te  272 (653)
                      .+..++.|.+-+| .+||.|.|||.|... .-|+||+|+|++..+|-|-++.+|..+.
T Consensus         5 p~~c~v~y~~n~W-~~Gf~~~vtVtN~~~-~~~~gW~v~~~~p~g~~i~~~Wna~~~~   60 (110)
T d1exha_           5 PAGCQVLWGVNQW-NTGFTANVTVKNTSS-APVDGWTLTFSFPSGQQVTQAWSSTVTQ   60 (110)
T ss_dssp             CCCEEEECCEEEC-SSCEEEEEEEEECSS-SCEESEEEEEECSSCCEEEEEESSEEEE
T ss_pred             CcceEEEEEEccC-CCCcEEEEEEEeCCC-CcccCcEEEEECCCCCEEeeeeceEEEe
Confidence            4567899987665 689999999999977 6688999999999999999999998654
>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure