Citrus Sinensis ID: 045705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MNIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccccccEEEEEEEccccccccccccccccHHHcccccccccccccHHHHccccccHHccccccccccccccccccccHHHHHHcccccccccccccHHHccccccccccccccccccccccccccccccccccEEEccccccEEEccHHHHHHHcccccccccccEEcccHHHHcccccccEEcccccccccccccccccccccccccccccccccccHHHHcccccccEEcccccccccccccccccccccEEEcccccccccccHHHcccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccHHHHHEEcccccccccccccccccEEEcccccccccccccccccHHHHHHHHHHccccccccccHHcccccccEEEcccccccccccccccHHHccccHcEEcccccccccccccHHHHHHHcccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEcccccccEEccccccccccccEEEcEEccEEccccHHHHHcccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHHHHHHHHcEEEcccccccccccHHHHccHccc
Coil and Loop (DISEMBL)
mniaelndldevtrlegfqtgtylgmeihdvpfemveyfdpchpvlvggiglgkqNVGYMQARLKQHRWWHkkvlksrdpifvsigwrriqtvpvyaiedrngrhrmlkytpEHMHSLamfwgplappqmrsccpkfiQQSVMFSMLFhvldfphtaysdsmeeahvTWPTWLLYLDINAISGSILDEIRSLKSLFNlrlgdntlsgsiplslgnltnlATLYLDSNALSGSILNEIGNLKSLYYLELTsntlsgsiplplgnltnLVVLElsdnklsglippsfgnltnlttlyvyknsIFGSILDEIGNLKSLSNINLSlnklngsiplsltnlTNSLEVVCLssnhivgeiplelrkhsslv
Flexible Loop (DISEMBL)
mniaelndldevtrleGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRwwhkkvlksrdpifvsigwrriqtvpvyaiedrngRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNhivgeiplelrkhsslv
Low Complexity Region (SEG)
MNIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEignlkslsninlslnklngsIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV
Disordered region (IsUnstruct)
*********DEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL*********
Disordered Region (DISOPRED)
****ELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV
Disordered Region (DISEMBL)
MNIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV
Disordered Region (DISPRO)
MNIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH*SL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIAELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q14692	1282	Ribosome biogenesis prote	yes	no	0.345	0.098	0.573	3e-42
O94653	1121	Ribosome biogenesis prote	yes	no	0.383	0.124	0.475	5e-37
A8MV67	101	Putative BMS1-like protei	no	no	0.273	0.990	0.594	1e-33
A8MXU9	101	Putative BMS1-like protei	no	no	0.273	0.990	0.574	3e-32
Q9LP24	1120	Probable leucine-rich rep	no	no	0.526	0.171	0.433	5e-32
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.520	0.181	0.439	2e-31
A8MTN0	101	Putative BMS1-like protei	no	no	0.273	0.990	0.564	2e-31
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.591	0.196	0.399	9e-29
O49318	1124	Probable leucine-rich rep	no	no	0.506	0.164	0.446	2e-28
Q08965	1183	Ribosome biogenesis prote	yes	no	0.358	0.110	0.431	9e-28

>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 98/129 (75%), Gaps = 3/129 (2%)

Query: 1   MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           +N AE  D D+  R+  EGF+ G Y+ +EI +VP E V+ FDP +P+++GG+G  + NVG
Sbjct: 861 LNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVG 920

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           Y+Q RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  
Sbjct: 921 YVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCG 979

Query: 119 AMFWGPLAP 127
           A FWGP+ P
Sbjct: 980 AAFWGPITP 988

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)

>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2

 Score =  155 bits (392), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/143 (47%), Positives = 96/143 (67%), Gaps = 3/143 (2%)

Query: 1   MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           +N     D+D  +R  +EG++ GTY+ + I+DVPFE VE+FD  +PV+VGG+   +Q  G
Sbjct: 701 INREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYG 760

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
            +Q R+K+HRW HKK+LK+ DP+  S+GWRR Q++PVY+I D   R+RMLKYTPEHMH  
Sbjct: 761 LVQVRIKRHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCF 819

Query: 119 AMFWGPLAPPQMRSCCPKFIQQS 141
             F+GP   P    C  + +  S
Sbjct: 820 GTFYGPFVAPNSGFCAVQSVANS 842

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 23  YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIF 82
           Y+ +EI +VP E V+  DP +P+++GG+G  + NVGY+Q RLK+HRW+ KK+LKSRDPI 
Sbjct: 2   YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPII 60

Query: 83  VSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWG 123
            S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FW 
Sbjct: 61  FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%), Gaps = 1/101 (0%)

Query: 23  YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIF 82
           Y+ +EI +VP E V+  DP +P+++GG+G  + NVGY++  LK+HRW+ KK+LKSRDPI 
Sbjct: 2   YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRWY-KKILKSRDPII 60

Query: 83  VSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWG 123
            S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FW 
Sbjct: 61  FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 25/217 (11%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +LYL  N ++  I  E+ +++S+ +L L  N L+GSIP SLGNL NL  LYL  N L+G 
Sbjct: 154 VLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGV 213

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV----------------------- 269
           I  E+GN++S+  L L+ N L+GSIP  LGNL NL+V                       
Sbjct: 214 IPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMT 273

Query: 270 -LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS 328
            L LS NKL+G IP S GNL NLT L +++N + G I  ++GN++S+ ++ LS NKL GS
Sbjct: 274 NLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGS 333

Query: 329 IPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
           IP SL NL N L ++ L  N++ G IP EL    S++
Sbjct: 334 IPSSLGNLKN-LTILYLYENYLTGVIPPELGNMESMI 369

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 121/191 (63%), Gaps = 1/191 (0%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+L  N ++GSI  EI  L  +  + + DN L+G IP S GNLT L  LYL  N+LSGSI
Sbjct: 171 LHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSGSI 230

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
            +EIGNL +L  L L  N L+G IP   GNL N+ +L + +N+LSG IPP  GN+T L T
Sbjct: 231 PSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDT 290

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L ++ N + G I   +GN+K+L+ ++L LN+LNGSIP  L  + + +++  +S N + G 
Sbjct: 291 LSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLE-ISENKLTGP 349

Query: 354 IPLELRKHSSL 364
           +P    K ++L
Sbjct: 350 VPDSFGKLTAL 360

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 23  YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIF 82
           Y+ +EI +VP E V+ FDP +P+++GG+G  + NVG++Q RLK+HRW+ KK+LKS+DPI 
Sbjct: 2   YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRWY-KKILKSQDPII 60

Query: 83  VSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWG 123
            S+GWRR QT+ +Y IED NGR R+LKYTP+H+H  A FW 
Sbjct: 61  FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  128 bits (321), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTW-LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS 206
           F VLD    + S  +      + T  LL L  N +SG+I  ++++ KSL  L LGDN L+
Sbjct: 405 FSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLT 464

Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
           GS+P+ L NL NL  L L  N LSG+I  ++G LK+L  L L +N  +G IP  +GNLT 
Sbjct: 465 GSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTK 524

Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           +V   +S N+L+G IP   G+   +  L +  N   G I  E+G L  L  + LS N+L 
Sbjct: 525 IVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLT 584

Query: 327 GSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
           G IP S  +LT  +E+  L  N +   IP+EL K +SL
Sbjct: 585 GEIPHSFGDLTRLMELQ-LGGNLLSENIPVELGKLTSL 621

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 107/186 (57%), Gaps = 1/186 (0%)

Query: 179 NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG 238
           N +SG + +EI  L +L  L    N L+G +P SLGNL  L T     N  SG+I  EIG
Sbjct: 167 NKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIG 226

Query: 239 NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298
              +L  L L  N +SG +P  +G L  L  + L  NK SG IP   GNLT+L TL +Y 
Sbjct: 227 KCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYG 286

Query: 299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358
           NS+ G I  EIGN+KSL  + L  N+LNG+IP  L  L+  +E+   S N + GEIP+EL
Sbjct: 287 NSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEID-FSENLLSGEIPVEL 345

Query: 359 RKHSSL 364
            K S L
Sbjct: 346 SKISEL 351

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/132 (43%), Positives = 86/132 (65%), Gaps = 1/132 (0%)

Query: 10  DEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRW 69
           ++  R+EGF+ G+Y+ +    VP E V+ F+P  P+++GG+   +   G ++ARL++HRW
Sbjct: 775 EQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKFPIVMGGLLPTEIKFGIVKARLRRHRW 834

Query: 70  WHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQ 129
            HKK+LK+ DP+ +S+GWRR QT+P+Y   D   R RMLKYTPEH +  A F+GPL  P 
Sbjct: 835 -HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLKYTPEHTYCNAAFYGPLCSPN 893

Query: 130 MRSCCPKFIQQS 141
              C  + +  S
Sbjct: 894 TPFCGVQIVANS 905

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus. The depletion of BMS1 interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
356544500	1181	PREDICTED: ribosome biogenesis protein B	0.427	0.132	0.703	5e-62
224133372	1181	predicted protein [Populus trichocarpa]	0.424	0.131	0.695	2e-61
357473083	1175	Ribosome biogenesis protein BMS1-like pr	0.347	0.108	0.823	3e-61
357473081	1200	Ribosome biogenesis protein BMS1-like pr	0.347	0.105	0.823	3e-61
356541129	1176	PREDICTED: ribosome biogenesis protein B	0.347	0.107	0.823	3e-61
222624872	1130	hypothetical protein OsJ_10724 [Oryza sa	0.350	0.113	0.778	6e-61
218192763	1130	hypothetical protein OsI_11428 [Oryza sa	0.350	0.113	0.778	6e-61
115452841	1180	Os03g0333100 [Oryza sativa Japonica Grou	0.350	0.108	0.778	6e-61
357473085	988	Ribosome biogenesis protein BMS1-like pr	0.427	0.157	0.691	6e-60
357112362	1178	PREDICTED: ribosome biogenesis protein B	0.350	0.108	0.763	8e-60

>gi|356544500|ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 114/162 (70%), Positives = 128/162 (79%), Gaps = 6/162 (3%)

Query: 1   MNIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNIAELNDLDE TRLE  GFQTGTYL +EI DVP EMVEYFDP HP+LVGGIG+G++NVG
Sbjct: 756 MNIAELNDLDEATRLEIEGFQTGTYLRLEIRDVPCEMVEYFDPYHPILVGGIGIGEENVG 815

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQARLK+HRW HKKVLK+RDPI VS+GWRR QT P+YAIED NGRHRMLKYTPEHMH L
Sbjct: 816 YMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTTPIYAIEDSNGRHRMLKYTPEHMHCL 874

Query: 119 AMFWGPLAPPQMRSCCPKFI---QQSVMFSMLFHVLDFPHTA 157
           AMFWGPLAPP       + +   Q +   +    VL+F H A
Sbjct: 875 AMFWGPLAPPNTGVVAIQNLSNNQATFRITATAVVLEFNHAA 916

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 128/161 (79%), Gaps = 6/161 (3%)

Query: 2   NIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGY 59
           NIAELNDLDE TRLE  GFQTGTYL +E+HDVPFEMVE+FDPC P+LVGGIGLG+++VGY
Sbjct: 759 NIAELNDLDEETRLEIEGFQTGTYLRLELHDVPFEMVEHFDPCDPILVGGIGLGEEHVGY 818

Query: 60  MQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLA 119
           MQARLK+HRW H+KVLK++DP+  SIGWRR QT PVYAIEDRNGRHRMLKYTPEHMH LA
Sbjct: 819 MQARLKRHRW-HRKVLKTKDPVIFSIGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLA 877

Query: 120 MFWGPLAPPQMRSCCPKFI---QQSVMFSMLFHVLDFPHTA 157
            FWGPLAPP       + +   Q S   +    VL+F H A
Sbjct: 878 TFWGPLAPPNTGVVAVQNLANNQASFRITATAVVLEFNHAA 918

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473083|ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507881|gb|AES89023.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/130 (82%), Positives = 118/130 (90%), Gaps = 3/130 (2%)

Query: 1   MNIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNIAELNDLDE TRLE  GF+TGTYL +E+HDVP EMVE+FDP HP+LVGG+GLG++NVG
Sbjct: 752 MNIAELNDLDEDTRLEVEGFRTGTYLRLEVHDVPCEMVEHFDPYHPILVGGVGLGEENVG 811

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQARLK+HRW HKKVLK+RDPI VS+GWRR QT PVYAIED NGRHRMLKYTPEHMH L
Sbjct: 812 YMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTTPVYAIEDLNGRHRMLKYTPEHMHCL 870

Query: 119 AMFWGPLAPP 128
           AMFWGPLAPP
Sbjct: 871 AMFWGPLAPP 880

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473081|ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507880|gb|AES89022.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/130 (82%), Positives = 118/130 (90%), Gaps = 3/130 (2%)

Query: 1   MNIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNIAELNDLDE TRLE  GF+TGTYL +E+HDVP EMVE+FDP HP+LVGG+GLG++NVG
Sbjct: 752 MNIAELNDLDEDTRLEVEGFRTGTYLRLEVHDVPCEMVEHFDPYHPILVGGVGLGEENVG 811

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQARLK+HRW HKKVLK+RDPI VS+GWRR QT PVYAIED NGRHRMLKYTPEHMH L
Sbjct: 812 YMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTTPVYAIEDLNGRHRMLKYTPEHMHCL 870

Query: 119 AMFWGPLAPP 128
           AMFWGPLAPP
Sbjct: 871 AMFWGPLAPP 880

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541129|ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/130 (82%), Positives = 117/130 (90%), Gaps = 3/130 (2%)

Query: 1   MNIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNIAELNDLDE TRLE  GF+TGTYL +EIHDVP EMVEYFDP HP+LVGGIG+G++NVG
Sbjct: 751 MNIAELNDLDEATRLEIEGFRTGTYLRLEIHDVPCEMVEYFDPYHPILVGGIGIGEENVG 810

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQARLK+HRW HKKVLK+RDPI VS+GWRR QT P+YAIED NGR RMLKYTPEHMH L
Sbjct: 811 YMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTTPIYAIEDSNGRDRMLKYTPEHMHCL 869

Query: 119 AMFWGPLAPP 128
           AMFWGPLAPP
Sbjct: 870 AMFWGPLAPP 879

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624872|gb|EEE59004.1| hypothetical protein OsJ_10724 [Oryza sativa Japonica Group]

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/131 (77%), Positives = 118/131 (90%), Gaps = 3/131 (2%)

Query: 1   MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNI+ELNDLDE TR  +EGF+TG+Y+ +E+H VPFE+VEYFDPCHP+LVGGIGLG++N G
Sbjct: 711 MNISELNDLDEDTRVEIEGFRTGSYIRLEVHGVPFELVEYFDPCHPILVGGIGLGEENTG 770

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQA LK+HRW H+KVLK++DPI VSIGWRR QT PVYAIEDRNGRHRMLKYTPEHMH  
Sbjct: 771 YMQASLKRHRW-HRKVLKTKDPIIVSIGWRRFQTTPVYAIEDRNGRHRMLKYTPEHMHCF 829

Query: 119 AMFWGPLAPPQ 129
           AMFWGPLAPP+
Sbjct: 830 AMFWGPLAPPK 840

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192763|gb|EEC75190.1| hypothetical protein OsI_11428 [Oryza sativa Indica Group]

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/131 (77%), Positives = 118/131 (90%), Gaps = 3/131 (2%)

Query: 1   MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNI+ELNDLDE TR  +EGF+TG+Y+ +E+H VPFE+VEYFDPCHP+LVGGIGLG++N G
Sbjct: 711 MNISELNDLDEDTRVEIEGFRTGSYIRLEVHGVPFELVEYFDPCHPILVGGIGLGEENTG 770

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQA LK+HRW H+KVLK++DPI VSIGWRR QT PVYAIEDRNGRHRMLKYTPEHMH  
Sbjct: 771 YMQASLKRHRW-HRKVLKTKDPIIVSIGWRRFQTTPVYAIEDRNGRHRMLKYTPEHMHCF 829

Query: 119 AMFWGPLAPPQ 129
           AMFWGPLAPP+
Sbjct: 830 AMFWGPLAPPK 840

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452841|ref|NP_001050021.1| Os03g0333100 [Oryza sativa Japonica Group] gi|113548492|dbj|BAF11935.1| Os03g0333100 [Oryza sativa Japonica Group]

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 102/131 (77%), Positives = 118/131 (90%), Gaps = 3/131 (2%)

Query: 1   MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNI+ELNDLDE TR  +EGF+TG+Y+ +E+H VPFE+VEYFDPCHP+LVGGIGLG++N G
Sbjct: 761 MNISELNDLDEDTRVEIEGFRTGSYIRLEVHGVPFELVEYFDPCHPILVGGIGLGEENTG 820

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQA LK+HRW H+KVLK++DPI VSIGWRR QT PVYAIEDRNGRHRMLKYTPEHMH  
Sbjct: 821 YMQASLKRHRW-HRKVLKTKDPIIVSIGWRRFQTTPVYAIEDRNGRHRMLKYTPEHMHCF 879

Query: 119 AMFWGPLAPPQ 129
           AMFWGPLAPP+
Sbjct: 880 AMFWGPLAPPK 890

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473085|ref|XP_003606827.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507882|gb|AES89024.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 112/162 (69%), Positives = 129/162 (79%), Gaps = 6/162 (3%)

Query: 1   MNIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNIAELNDLDE TRLE  GF+TGTYL +E+HDVP EMVE+FDP HP+LVGG+GLG++NVG
Sbjct: 752 MNIAELNDLDEDTRLEVEGFRTGTYLRLEVHDVPCEMVEHFDPYHPILVGGVGLGEENVG 811

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQARLK+HRW HKKVLK+RDPI VS+GWRR QT PVYAIED NGRHRMLKYTPEHMH L
Sbjct: 812 YMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTTPVYAIEDLNGRHRMLKYTPEHMHCL 870

Query: 119 AMFWGPLAPPQMRSCCPKFI---QQSVMFSMLFHVLDFPHTA 157
           AMFWGPLAPP       + +   Q +   +    V++F H A
Sbjct: 871 AMFWGPLAPPNTGIVAVQTLSNNQATFRITATAVVVEFNHAA 912

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357112362|ref|XP_003557978.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Brachypodium distachyon]

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 100/131 (76%), Positives = 117/131 (89%), Gaps = 3/131 (2%)

Query: 1   MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           MNI+ELNDLDE TR  +EGF+TGTY+ +E+H VPFE+VE+FDPCHP+LVGGIGLG++N G
Sbjct: 761 MNISELNDLDEDTRVEIEGFRTGTYVRLEVHGVPFELVEHFDPCHPILVGGIGLGEENTG 820

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
           YMQ  LK+HRW H+KVLK++DPI VSIGWRR QT P+YAIEDRNGRHRMLKYTPEHMH  
Sbjct: 821 YMQVSLKRHRW-HRKVLKTKDPIVVSIGWRRFQTTPIYAIEDRNGRHRMLKYTPEHMHCF 879

Query: 119 AMFWGPLAPPQ 129
           AMFWGPLAPP+
Sbjct: 880 AMFWGPLAPPK 890

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2033050	1147	AT1G06720 [Arabidopsis thalian	0.345	0.109	0.790	6.9e-54
UNIPROTKB|Q14692	1282	BMS1 "Ribosome biogenesis prot	0.345	0.098	0.573	1e-37
UNIPROTKB|E9PTV4	1282	Bms1 "Protein Bms1" [Rattus no	0.345	0.098	0.558	2.1e-37
UNIPROTKB|F1NH69	1304	BMS1 "Uncharacterized protein"	0.345	0.096	0.565	2.2e-37
UNIPROTKB|F1PKN2	1287	BMS1 "Uncharacterized protein"	0.345	0.097	0.573	3.5e-37
UNIPROTKB|E1BPP2	1290	BMS1 "Uncharacterized protein"	0.345	0.097	0.565	9.5e-37
ZFIN|ZDB-GENE-060720-2	1221	bms1l "BMS1-like, ribosome ass	0.345	0.103	0.550	1.8e-36
UNIPROTKB|F1RG23	399	BMS1 "Uncharacterized protein"	0.284	0.260	0.609	3.6e-34
POMBASE|SPBC31E1.06	1121	bms1 "GTP binding protein Bms1	0.383	0.124	0.475	1.9e-33
RGD|1308043	392	Bms1 "BMS1 homolog, ribosome a	0.273	0.255	0.594	4.1e-33

TAIR|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.9e-54, P = 6.9e-54
 Identities = 102/129 (79%), Positives = 114/129 (88%)

Query:     2 NIAELNDLDEVTRLE--GFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGY 59
             N  E NDLDE TR+E  GF+TGTYL +EIH+VP+EMVE+FDPCHP+LVGGIG G+ NVGY
Sbjct:   732 NELEYNDLDEETRIELAGFRTGTYLRLEIHNVPYEMVEFFDPCHPILVGGIGFGEDNVGY 791

Query:    60 MQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLA 119
             MQARLK+HRW HKKVLK+RDPI VSIGWRR QT+PV+AIEDRNGRHRMLKYTPEHMH LA
Sbjct:   792 MQARLKKHRW-HKKVLKTRDPIIVSIGWRRYQTIPVFAIEDRNGRHRMLKYTPEHMHCLA 850

Query:   120 MFWGPLAPP 128
              FWGPL PP
Sbjct:   851 SFWGPLVPP 859

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 417 (151.9 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 74/129 (57%), Positives = 98/129 (75%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N AE  D D+  R+  EGF+ G Y+ +EI +VP E V+ FDP +P+++GG+G  + NVG
Sbjct:   861 LNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNSEGNVG 920

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  
Sbjct:   921 YVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCG 979

Query:   119 AMFWGPLAP 127
             A FWGP+ P
Sbjct:   980 AAFWGPITP 988

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0042255 "ribosome assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E9PTV4 Bms1 "Protein Bms1" [Rattus norvegicus (taxid:10116)]

 Score = 414 (150.8 bits), Expect = 2.1e-37, P = 2.1e-37
 Identities = 72/129 (55%), Positives = 98/129 (75%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N AE  D D+ TR+  EGF+ G Y+ +EI ++P E V+ FDP +P+++GG+G  +  VG
Sbjct:   863 LNQAEFEDQDDETRVQYEGFRPGMYVRIEIENIPCEFVQNFDPHYPIILGGLGNSEGTVG 922

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW+ KK+LKSRDP+  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  
Sbjct:   923 YVQMRLKKHRWY-KKILKSRDPVIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCG 981

Query:   119 AMFWGPLAP 127
             A FWGP+ P
Sbjct:   982 ATFWGPITP 990

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 414 (150.8 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 73/129 (56%), Positives = 98/129 (75%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N  E  D D+ TR+  EGF+ G Y+ +EI +VP E V  FDP +P+++GG+G  + NVG
Sbjct:   881 LNKTEFEDQDDETRVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPIILGGLGNSEGNVG 940

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW+ KK+LK+RDP+ +S GWRR QT+PV+ IED NGRHR+LKYTP+HMH  
Sbjct:   941 YVQLRLKKHRWY-KKILKTRDPLILSFGWRRFQTIPVFYIEDHNGRHRLLKYTPQHMHCG 999

Query:   119 AMFWGPLAP 127
             A FWGP+ P
Sbjct:  1000 ATFWGPITP 1008

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 3.5e-37, P = 3.5e-37
 Identities = 74/129 (57%), Positives = 97/129 (75%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N AE  D D+  R+  EGF+ G Y+ +EI +VP E V  FDP +P+++GG+G  + NVG
Sbjct:   866 LNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPIILGGLGNSEGNVG 925

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  
Sbjct:   926 YVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCG 984

Query:   119 AMFWGPLAP 127
             A FWGP+ P
Sbjct:   985 ATFWGPITP 993

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 408 (148.7 bits), Expect = 9.5e-37, P = 9.5e-37
 Identities = 73/129 (56%), Positives = 97/129 (75%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N AE  D ++  R+  EGF+ G Y+ +EI +VP E V  FDP +P+++GG+G  + NVG
Sbjct:   869 LNRAEFEDQEDEARVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPIILGGLGNSEGNVG 928

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW+ KK+LKSRDPI  S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  
Sbjct:   929 YVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCG 987

Query:   119 AMFWGPLAP 127
             A FWGP+ P
Sbjct:   988 ATFWGPITP 996

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)]

 Score = 405 (147.6 bits), Expect = 1.8e-36, P = 1.8e-36
 Identities = 71/129 (55%), Positives = 95/129 (73%)

Query:     1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N  E  D+D+  R+  EGF+ G Y+ +EI  VP E V  FDP +P ++GG+G  + NVG
Sbjct:   801 LNRQEFEDVDDEIRVQYEGFRPGMYVRVEIPAVPCEFVTNFDPHYPTILGGLGASEGNVG 860

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
             Y+Q RLK+HRW H ++LK+RDP+ +S+GWRR QT+P+Y IED NGRHR+LKYTPEHMH  
Sbjct:   861 YLQMRLKKHRW-HNRILKTRDPLILSLGWRRFQTIPLYYIEDHNGRHRLLKYTPEHMHCG 919

Query:   119 AMFWGPLAP 127
             A  WGP+ P
Sbjct:   920 ATIWGPITP 928

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RG23 BMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 64/105 (60%), Positives = 83/105 (79%)

Query:    23 YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIF 82
             Y+ +EI +VP E V  FDP +P+++GG+G  + NVGY+Q RLK+HRW+ KK+LKSRDPI 
Sbjct:     2 YVRIEIENVPCEFVLNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPII 60

Query:    83 VSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAP 127
              S+GWRR QT+P+Y IED NGR R+LKYTP+HMH  A FWGP+ P
Sbjct:    61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPITP 105

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPBC31E1.06 bms1 "GTP binding protein Bms1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 376 (137.4 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 68/143 (47%), Positives = 96/143 (67%)

Query:     1 MNIAELNDLDEVTR--LEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
             +N     D+D  +R  +EG++ GTY+ + I+DVPFE VE+FD  +PV+VGG+   +Q  G
Sbjct:   701 INREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGGLLPNEQRYG 760

Query:    59 YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
              +Q R+K+HRW HKK+LK+ DP+  S+GWRR Q++PVY+I D   R+RMLKYTPEHMH  
Sbjct:   761 LVQVRIKRHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLKYTPEHMHCF 819

Query:   119 AMFWGPLAPPQMRSCCPKFIQQS 141
               F+GP   P    C  + +  S
Sbjct:   820 GTFYGPFVAPNSGFCAVQSVANS 842

GO:0003924 "GTPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

RGD|1308043 Bms1 "BMS1 homolog, ribosome assembly protein (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 60/101 (59%), Positives = 80/101 (79%)

Query:    27 EIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIG 86
             EI ++P E V+ FDP +P+++GG+G  +  VGY+Q RLK+HRW+ KK+LKSRDP+  S+G
Sbjct:     1 EIENIPCEFVQNFDPHYPIILGGLGNSEGTVGYVQMRLKKHRWY-KKILKSRDPVIFSVG 59

Query:    87 WRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAP 127
             WRR QT+P+Y IED NGR R+LKYTP+HMH  A FWGP+ P
Sbjct:    60 WRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPITP 100

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	1e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-36
pfam04950	293	pfam04950, DUF663, Protein of unknown function (DU	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-33
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  152 bits (385), Expect = 1e-40
 Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 3/135 (2%)

Query: 1   MNIAELNDLD--EVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVG 58
           +N +E   +       +EG++ G Y+ + +  VP E V+ F+  +P+++GG+   ++ +G
Sbjct: 686 INRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMG 745

Query: 59  YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSL 118
            +Q R+K+HRW HKK+LK+ DP+  S+GWRR Q++PVY+++D   R+RMLKYTPEHMH  
Sbjct: 746 IVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCN 804

Query: 119 AMFWGPLAPPQMRSC 133
             F+GP+ PP    C
Sbjct: 805 VSFYGPVVPPNTGFC 819

Length = 1077

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  144 bits (365), Expect = 5e-38
 Identities = 86/185 (46%), Positives = 114/185 (61%), Gaps = 1/185 (0%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N +SG I ++I S  SL  L LG N L G IP SL NLT+L  L L SN L G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
             E+G +KSL ++ L  N LSG IP  +G LT+L  L+L  N L+G IP S GNL NL  
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L++Y+N + G I   I +L+ L +++LS N L+G IP  +  L N LE++ L SN+  G+
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGK 323

Query: 354 IPLEL 358
           IP+ L
Sbjct: 324 IPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (352), Expect = 3e-36
 Identities = 86/194 (44%), Positives = 114/194 (58%), Gaps = 3/194 (1%)

Query: 173 LLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           L  LD+  N + G I + + +L SL  L L  N L G IP  LG + +L  +YL  N LS
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
           G I  EIG L SL +L+L  N L+G IP  LGNL NL  L L  NKLSG IPPS  +L  
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L +L +  NS+ G I + +  L++L  ++L  N   G IP++LT+L   L+V+ L SN  
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKF 344

Query: 351 VGEIPLELRKHSSL 364
            GEIP  L KH++L
Sbjct: 345 SGEIPKNLGKHNNL 358

Length = 968

>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663)

 Score =  131 bits (331), Expect = 1e-35
 Identities = 43/125 (34%), Positives = 76/125 (60%), Gaps = 1/125 (0%)

Query: 5   ELNDLDEVTRLEGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARL 64
            LN+ +E  R+EG + G Y+ +EI +VP E+ E F+    ++V G+   +  +  +  ++
Sbjct: 57  ILNEYEEEKRIEGVKPGWYVRLEIKNVPKELAENFNSKQLIIVFGLLPHEHKMSVVNFKI 116

Query: 65  KQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGP 124
           K+HRW +KK LKS++P+ + +G+RR Q+ P+Y+    N +H+  +Y P H    A F+GP
Sbjct: 117 KKHRW-YKKPLKSKEPLIIQVGFRRFQSQPIYSQNTSNDKHKYERYLPPHKTCNATFYGP 175

Query: 125 LAPPQ 129
           +  P 
Sbjct: 176 ITFPN 180

This family contains several uncharacterized eukaryotic proteins. Length = 293

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (325), Expect = 9e-33
 Identities = 84/193 (43%), Positives = 112/193 (58%), Gaps = 7/193 (3%)

Query: 176 LDINAISGSILDEIRSL-KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL 234
           L  N +SG I D+I +   SL  L L +N  +GSIP   G++ NL TL L +N LSG I 
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157

Query: 235 NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294
           N+IG+  SL  L+L  N L G IP  L NLT+L  L L+ N+L G IP   G + +L  +
Sbjct: 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI 354
           Y+  N++ G I  EIG L SL++++L  N L G IP SL NL N L+ + L  N + G I
Sbjct: 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN-LQYLFLYQNKLSGPI 276

Query: 355 P---LELRKHSSL 364
           P     L+K  SL
Sbjct: 277 PPSIFSLQKLISL 289

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  124 bits (312), Expect = 4e-31
 Identities = 79/192 (41%), Positives = 106/192 (55%), Gaps = 1/192 (0%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
            +YL  N +SG I  EI  L SL +L L  N L+G IP SLGNL NL  L+L  N LSG 
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           I   I +L+ L  L+L+ N+LSG IP  +  L NL +L L  N  +G IP +  +L  L 
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            L ++ N   G I   +G   +L+ ++LS N L G IP  L +  N  +++ L SN + G
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI-LFSNSLEG 394

Query: 353 EIPLELRKHSSL 364
           EIP  L    SL
Sbjct: 395 EIPKSLGACRSL 406

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  113 bits (283), Expect = 3e-27
 Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 5/183 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+L  N +SG I   I SL+ L +L L DN+LSG IP  +  L NL  L+L SN  +G I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
              + +L  L  L+L SN  SG IP  LG   NL VL+LS N L+G IP    +  NL  
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN--LTNSLEVVCLSSNHIV 351
           L ++ NS+ G I   +G  +SL  + L  N  +G +P   T   L   L+   +S+N++ 
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD---ISNNNLQ 441

Query: 352 GEI 354
           G I
Sbjct: 442 GRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (275), Expect = 4e-26
 Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 24/216 (11%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +L L  N ++G I + + S  +LF L L  N+L G IP SLG   +L  + L  N+ SG 
Sbjct: 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSI-----PLP------------LGNL------TNLVV 269
           + +E   L  +Y+L++++N L G I      +P             G L        L  
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLEN 479

Query: 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI 329
           L+LS N+ SG +P   G+L+ L  L + +N + G I DE+ + K L +++LS N+L+G I
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 330 PLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
           P S + +   L  + LS N + GEIP  L    SLV
Sbjct: 540 PASFSEMP-VLSQLDLSQNQLSGEIPKNLGNVESLV 574

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.6 bits (243), Expect = 5e-22
 Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 3/158 (1%)

Query: 175 YLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +LDI  N + G I      + SL  L L  N   G +P S G+   L  L L  N  SG+
Sbjct: 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGA 490

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           +  ++G+L  L  L+L+ N LSG IP  L +   LV L+LS N+LSG IP SF  +  L+
Sbjct: 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330
            L + +N + G I   +GN++SL  +N+S N L+GS+P
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 2/193 (1%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +L L  N  SG I   +    +L  L L  N L+G IP  L +  NL  L L SN+L G 
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           I   +G  +SL  + L  N+ SG +P     L  +  L++S+N L G I     ++ +L 
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            L + +N  FG + D  G+ K L N++LS N+ +G++P  L +L+  +++  LS N + G
Sbjct: 456 MLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLK-LSENKLSG 513

Query: 353 EIPLELRKHSSLV 365
           EIP EL     LV
Sbjct: 514 EIPDELSSCKKLV 526

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 9e-21
 Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 4/168 (2%)

Query: 198 LRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNL-KSLYYLELTSNTLSGS 256
           + L    +SG I  ++  L  + T+ L +N LSG I ++I     SL YL L++N  +GS
Sbjct: 74  IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS 316
           I  P G++ NL  L+LS+N LSG IP   G+ ++L  L +  N + G I + + NL SL 
Sbjct: 134 I--PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191

Query: 317 NINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
            + L+ N+L G IP  L  +  SL+ + L  N++ GEIP E+   +SL
Sbjct: 192 FLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 1e-20
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 176 LDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILN 235
           L  N+ SG +  E   L  ++ L + +N L G I     ++ +L  L L  N   G + +
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY 295
             G+ K L  L+L+ N  SG++P  LG+L+ L+ L+LS+NKLSG IP    +   L +L 
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529

Query: 296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355
           +  N + G I      +  LS ++LS N+L+G IP +L N+  SL  V +S NH+ G +P
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 44/111 (39%), Positives = 61/111 (54%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N  SG++  ++ SL  L  L+L +N LSG IP  L +   L +L L  N LSG I
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS 284
                 +  L  L+L+ N LSG IP  LGN+ +LV + +S N L G +P +
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L LD   + G I ++I  L+ L ++ L  N++ G+IP SLG++T+L  L L  N+ +GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLG 262
              +G L SL  L L  N+LSG +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 37/89 (41%), Positives = 55/89 (61%)

Query: 222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLI 281
           L LD+  L G I N+I  L+ L  + L+ N++ G+IP  LG++T+L VL+LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 282 PPSFGNLTNLTTLYVYKNSIFGSILDEIG 310
           P S G LT+L  L +  NS+ G +   +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 68.8 bits (168), Expect = 6e-13
 Identities = 65/169 (38%), Positives = 93/169 (55%), Gaps = 7/169 (4%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
            L L  N I  S+   +R+L +L NL L  N LS  +P  L NL+NL  L L  N +S  
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-D 200

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           +  EI  L +L  L+L++N++   +   L NL NL  LELS+NKL   +P S GNL+NL 
Sbjct: 201 LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLE 341
           TL +  N I  S +  +G+L +L  ++LS N L+ ++PL    L     
Sbjct: 259 TLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 64/166 (38%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLT-NLATLYLDSNALSGS 232
           L L++N +  +I  E+  L +L +L L +N ++  IP  +G L  NL  L L  N +  S
Sbjct: 98  LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-S 154

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           + + + NL +L  L+L+ N LS  +P  L NL+NL  L+LS NK+S  +PP    L+ L 
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN 338
            L +  NSI   +L  + NLK+LS + LS NKL   +P S+ NL+N
Sbjct: 213 ELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSN 256

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
           L L +  L G IP  +  L +L  + LS N + G IPPS G++T+L  L +  NS  GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 306 LDEIGNLKSLSNINLSLNKLNGSIPLSL 333
            + +G L SL  +NL+ N L+G +P +L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 199 RLGDNTLSGSIPLSLGNLTNLATLYLDSNAL--SGSILNEIGNLKSLYYLELTSNTLSGS 256
           RL  N  S ++ L   +L+ L +L L S +   S      + NL  L  L+L  N L  +
Sbjct: 49  RLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSN 108

Query: 257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS 316
           I   L  LTNL  L+L +N ++ + P      +NL  L +  N I  S+   + NL +L 
Sbjct: 109 I-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLK 166

Query: 317 NINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           N++LS N L+  +P  L+NL+N L  + LS N I
Sbjct: 167 NLDLSFNDLS-DLPKLLSNLSN-LNNLDLSGNKI 198

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS 362
           G I ++I  L+ L +INLS N + G+IP SL ++T SLEV+ LS N   G IP  L + +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLT 490

Query: 363 SL 364
           SL
Sbjct: 491 SL 492

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           +L  L+L++N L+         L NL VL+LS N L+ + P +F  L +L +L +  N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           TNL  L+LS+N+++ L  P   NL NL TL +  N I
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PF04950	297	DUF663: Protein of unknown function (DUF663); Inte	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
KOG1980	754	consensus Uncharacterized conserved protein [Funct	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
PLN03150	623	hypothetical protein; Provisional	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
PLN03150	623	hypothetical protein; Provisional	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
COG5177	769	Uncharacterized conserved protein [Function unknow	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.59
KOG4308	478	consensus LRR-containing protein [Function unknown	95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.5
KOG4308	478	consensus LRR-containing protein [Function unknown	94.38
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.9
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.32
smart00370	26	LRR Leucine-rich repeats, outliers.	92.32
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.87
smart00370	26	LRR Leucine-rich repeats, outliers.	89.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.65
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.52
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.33
KOG4341	483	consensus F-box protein containing LRR [General fu	83.12

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.98  E-value=1.5e-33  Score=257.04  Aligned_cols=139  Identities=41%  Similarity=0.886  Sum_probs=134.7

Q ss_pred             CchhhhcCCccchhc--cccccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceecccC
Q 045705            1 MNIAELNDLDEVTRL--EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSR   78 (365)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~~~~   78 (365)
                      |||.+|+.|+.+.|+  |||++|+||+|.++.||-+|+++|+..||.++||++++|..++.+|.+|+||+| ++++++++
T Consensus       686 inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~~~giVq~rikrhrW-hKKILKTN  764 (1077)
T COG5192         686 INRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTN  764 (1077)
T ss_pred             hhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhhhhhhhhhHHHHhHH-HHHHhccC
Confidence            689999999999987  999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             CceEEeeccccccccceeeeecccccccccccccCccccceeeeeccCCCCCCCcccccccc
Q 045705           79 DPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQ  140 (365)
Q Consensus        79 ~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~~~~  140 (365)
                      ||++||+||||||++|+|++.|...++||++|+|+||+|..+||||+|++++++|++++-..
T Consensus       765 dPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse~g  826 (1077)
T COG5192         765 DPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKG  826 (1077)
T ss_pred             CCeEEEechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999987433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3e-28  Score=254.62  Aligned_cols=222  Identities=37%  Similarity=0.494  Sum_probs=189.3

Q ss_pred             cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCc
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA  220 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~  220 (365)
                      +...+.|++||+++|.+.+.+|..+.. ..++.++|+.|.+.+..|..++.+++|+.|++++|.+.+.+|..++++++|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            344557888899888888777765543 3567788888888888888888888899999998888888888888888999


Q ss_pred             EEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705          221 TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       221 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      +|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.
T Consensus       240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            99999998888888888888999999999998888888888888889999999998888888888888899999999998


Q ss_pred             cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +.+..|..+..+++|+.|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..+++|
T Consensus       320 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCC
Confidence            8888888888889999999999999888888888887 69999999999988888888877665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=6.3e-28  Score=252.27  Aligned_cols=224  Identities=36%  Similarity=0.471  Sum_probs=206.6

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      .+...+.|++|++++|.+.+.+|..+.. ..++.++|+.|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence            3455668999999999998888876654 367789999999999999999999999999999999999999999999999


Q ss_pred             cEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecc
Q 045705          220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN  299 (365)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  299 (365)
                      ++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus       263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+.+.+|..+..+++|+.|++++|.+++.+|..+...+ +|+.|++++|.+++.+|..++.+++|.
T Consensus       343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~  407 (968)
T PLN00113        343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLR  407 (968)
T ss_pred             CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCC
Confidence            99989999999999999999999999999999998887 799999999999999999999988874

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus

Probab=99.92  E-value=5.7e-27  Score=207.44  Aligned_cols=122  Identities=45%  Similarity=0.841  Sum_probs=0.0

Q ss_pred             cccccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceecccCCceEEeeccccccccce
Q 045705           16 EGFQTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPV   95 (365)
Q Consensus        16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~~~~~p~~~s~gw~~~~~l~~   95 (365)
                      +|++||+||+|++.++|+++++++|.++|.++||++++|++++++|+++++|+| ++++++++||+++++|||||++.|+
T Consensus        72 ~g~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pi  150 (297)
T PF04950_consen   72 EGVRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNFRIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPI  150 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             eeeecccccccccccccCccccceeeeeccCCCCCCCcccccc
Q 045705           96 YAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFI  138 (365)
Q Consensus        96 ~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~~  138 (365)
                      |+..+.+.+++|++++|++++|.++++||+.+++++..+++..
T Consensus       151 fs~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~  193 (297)
T PF04950_consen  151 FSQEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKES  193 (297)
T ss_dssp             -------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999998887754

; PDB: 1WB1_D 1WB3_B 1WB2_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-23  Score=194.12  Aligned_cols=209  Identities=24%  Similarity=0.201  Sum_probs=138.2

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhcc--ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT--WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN  218 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~  218 (365)
                      .+...+.|++||||.|.++. ++...+.  .+++.++|+.|.|+......|..+.+|..|.|+.|+++...+.+|.++++
T Consensus       144 ~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  144 ELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            35666778889999988854 4433322  46777888888888888888888888888888888888777778888888


Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  298 (365)
                      |+.|+|..|+|...---.|.++++|+.|.|..|.+...-...|..|.++++|+|+.|++...-...+-++++|+.|+|++
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            88888888888643344566677777776666666644455566666666666666666655555555666666666666


Q ss_pred             cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      |.|..+.++...-+++|+.|||+.|+++..-+..+..+. .|++|+|+.|.++
T Consensus       303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSID  354 (873)
T ss_pred             hhhheeecchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchH
Confidence            666555555555566666666666666533333333333 3444444444333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=5.3e-23  Score=189.81  Aligned_cols=226  Identities=24%  Similarity=0.155  Sum_probs=192.5

Q ss_pred             cccccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCC
Q 045705          138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL  216 (365)
Q Consensus       138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l  216 (365)
                      ++.....+..++.|+|.+|.|...-...... ..++.++|+.|.|+.+.-..|..=.++++|+|++|+|+....+.|..+
T Consensus       117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l  196 (873)
T KOG4194|consen  117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL  196 (873)
T ss_pred             cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc
Confidence            3334444557999999999997665554433 356789999999997766777777889999999999999999999999


Q ss_pred             CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEe
Q 045705          217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV  296 (365)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  296 (365)
                      .+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-..+|-.+.++++|+|
T Consensus       197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L  276 (873)
T KOG4194|consen  197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL  276 (873)
T ss_pred             chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence            99999999999999777788999999999999999998443567899999999999999999888899999999999999


Q ss_pred             eccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          297 YKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       297 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ..|+++..-..++.+++.|+.|+|++|.|...-++...-. ++|+.|||++|+|+...+..|..++.|
T Consensus       277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             ccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHh
Confidence            9999988888899999999999999999995555554444 489999999999998778888776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=2.2e-23  Score=193.78  Aligned_cols=219  Identities=26%  Similarity=0.348  Sum_probs=139.1

Q ss_pred             cccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          140 QSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       140 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      ..+....-|.+||||+|++.............-+++|++|+|..+.-..|.+++.|-.||||+|++. .+|..+..+..|
T Consensus        97 ~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   97 TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML  175 (1255)
T ss_pred             chhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence            3455566799999999999654444444556678999999999766667788999999999999998 778888899999


Q ss_pred             cEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705          220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  298 (365)
                      ++|+|++|++.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+.+-.+.+|+.|+|++
T Consensus       176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence            99999999876333333444555555555554432 244555555556666666666555 4455555556666666666


Q ss_pred             cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcCCC
Q 045705          299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKHSS  363 (365)
Q Consensus       299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l~~  363 (365)
                      |+|+.. .-..+...+|++|+|+.|+++ .+|.++..++ .|+.|.+.+|+++ .-+|..++++..
T Consensus       255 N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~  317 (1255)
T KOG0444|consen  255 NKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQ  317 (1255)
T ss_pred             Cceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhh
Confidence            655322 222334445555555555555 5555555555 3555555555544 234555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.5e-23  Score=194.90  Aligned_cols=216  Identities=23%  Similarity=0.246  Sum_probs=183.4

Q ss_pred             cccceeeeccCCCCCC--CcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          144 FSMLFHVLDFPHTAYS--DSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      ..+.|+.+++.+|++.  |..++.+....++.++|+.|++. ..|..+..-+++-+|+||+|+|..+....|.++.-|-.
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            3446788888888775  33344444457788999999998 78888888899999999999999666666788999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC-CCCCccCcCCCccceEEeeccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-GLIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      ||||+|.+. .+|..+..+..|++|.|++|.+....-..+..|++|++|.+++..-+ .-+|.++..+.+|..++++.|.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            999999997 78888999999999999999987655556677888999999987654 3488999999999999999999


Q ss_pred             cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      + ...|+.+..+.+|+.|+|++|+|+ .+........ +|++|++|.|+++ .+|..++++++|+
T Consensus       234 L-p~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  234 L-PIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             C-CcchHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHH
Confidence            9 678999999999999999999999 7666667776 7999999999999 9999999998874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-22  Score=158.65  Aligned_cols=164  Identities=29%  Similarity=0.473  Sum_probs=118.2

Q ss_pred             CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705          191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL  270 (365)
Q Consensus       191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  270 (365)
                      .+.+.+.|.+|+|.++ ..|..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4455666777777777 56666777777777777777776 56777777777777777777776 667777777777777


Q ss_pred             ECCCCcCCC-CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705          271 ELSDNKLSG-LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       271 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      |+..|++.. ..|..|-.++.|+.|+|++|.+ +.+|..++++++|+.|.+.+|.+- .+|..++.+. .|++|++++|+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt-~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT-RLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH-HHHHHhcccce
Confidence            777777653 3566676777777777777777 566667777777777777777777 7777777777 57777777777


Q ss_pred             ccccCChhhhcC
Q 045705          350 IVGEIPLELRKH  361 (365)
Q Consensus       350 l~~~~p~~l~~l  361 (365)
                      ++ .+|.+++++
T Consensus       185 l~-vlppel~~l  195 (264)
T KOG0617|consen  185 LT-VLPPELANL  195 (264)
T ss_pred             ee-ecChhhhhh
Confidence            77 677766655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.79  E-value=4.6e-22  Score=176.26  Aligned_cols=207  Identities=31%  Similarity=0.373  Sum_probs=145.3

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      ..++.++.|+|++....+.......+..++++.|.+. ..++.++.+..|+.++..+|+++ ..|.++..+.++..+++.
T Consensus        91 ~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~  168 (565)
T KOG0472|consen   91 EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLE  168 (565)
T ss_pred             HHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcc
Confidence            3466677777777444433333334555666667766 56666777777777777777777 666677777777777777


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI  305 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  305 (365)
                      +|.+....|+.+. ++.|++||...|-+. .+|..++.+.+|.-|++.+|++. ..| .|.+++.|.+|+++.|++....
T Consensus       169 ~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lp  244 (565)
T KOG0472|consen  169 GNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLP  244 (565)
T ss_pred             ccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhH
Confidence            7777744444444 777777877777776 67777777888888888888877 344 6777778888888888774333


Q ss_pred             hhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705          306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH  361 (365)
Q Consensus       306 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l  361 (365)
                      .+...++.++..|||.+|+++ +.|..+..+. +|..||+|+|.++ ..|.+++++
T Consensus       245 ae~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             HHHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc
Confidence            344457778888888888887 7777777776 6888888888888 677777776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=5.1e-21  Score=151.32  Aligned_cols=176  Identities=32%  Similarity=0.465  Sum_probs=143.8

Q ss_pred             cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705          170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT  249 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  249 (365)
                      ..+.+.|++|+++ .+|..++.+.+|+.|++++|+|+ .+|.+++.+++|+.|++.-|.+. ..|.+|+.++.|+.||+.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            3455677777777 46667888899999999999998 78888999999999999999987 889999999999999999


Q ss_pred             cCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCC
Q 045705          250 SNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS  328 (365)
Q Consensus       250 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~  328 (365)
                      .|.+. ..+|..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+ -..|..++.+..|++|++++|+++ .
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee-e
Confidence            99886 356888888999999999999987 6788899999999999999988 456888899999999999999999 8


Q ss_pred             chhHhhhcc--CCCcEEEccCcccc
Q 045705          329 IPLSLTNLT--NSLEVVCLSSNHIV  351 (365)
Q Consensus       329 ~p~~l~~~~--~~L~~L~l~~n~l~  351 (365)
                      +|..++.+.  .+=+.+.+..|+..
T Consensus       188 lppel~~l~l~~~k~v~r~E~NPwv  212 (264)
T KOG0617|consen  188 LPPELANLDLVGNKQVMRMEENPWV  212 (264)
T ss_pred             cChhhhhhhhhhhHHHHhhhhCCCC
Confidence            887766543  12234455555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=5.2e-21  Score=169.62  Aligned_cols=220  Identities=26%  Similarity=0.334  Sum_probs=188.1

Q ss_pred             cccccccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC
Q 045705          136 KFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN  215 (365)
Q Consensus       136 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~  215 (365)
                      ..+...+.....+.++++.+|++....|....-.....++.++|++. ++|..+..+.+|+.|++++|.+. ..++.++.
T Consensus        58 ~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~  135 (565)
T KOG0472|consen   58 EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR  135 (565)
T ss_pred             hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence            33444455556788999999999776665554455667888889988 78889999999999999999999 77888999


Q ss_pred             CCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEE
Q 045705          216 LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY  295 (365)
Q Consensus       216 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  295 (365)
                      +..++.++..+|+++ ..|.++..+.+|..+++.+|.+....|..+ +|+.|++||...|-+. .+|+.++++.+|..|+
T Consensus       136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLY  212 (565)
T ss_pred             Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence            999999999999998 788899999999999999999995555544 5999999999999887 6788999999999999


Q ss_pred             eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +..|++. ..| .|.+|..|.+++++.|.+. .+|....+..+++.+||+++|++. +.|.+++.+++|
T Consensus       213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL  277 (565)
T KOG0472|consen  213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL  277 (565)
T ss_pred             hhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence            9999994 445 8999999999999999999 889888855458999999999999 899999988876

>PLN03210 Resistant to P

Probab=99.70  E-value=2.9e-16  Score=165.90  Aligned_cols=220  Identities=18%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             cccccccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCC
Q 045705          138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLT  217 (365)
Q Consensus       138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~  217 (365)
                      ++..+...+.|+.|+|+++.....+|.......++.++|+.|.....+|..+..+++|+.|++++|.....+|..+ +++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            3344455567888888876554666654444566777777776666778888888888888888765444556544 566


Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC------------------------------CCCCCC
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL------------------------------GNLTNL  267 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------------------------------~~l~~L  267 (365)
                      +|++|++++|.....+|..   ..+|++|++++|.+. .+|..+                              ...++|
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence            6777777666433333321   223344444444433 122110                              011234


Q ss_pred             CEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc--------------------CCCCCCCeEECcCCcCCC
Q 045705          268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI--------------------GNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       268 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l--------------------~~l~~L~~L~L~~N~l~~  327 (365)
                      +.|++++|...+.+|..++++++|+.|++++|...+.+|..+                    ....+|+.|+|++|.++ 
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-  859 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-  859 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-
Confidence            444444444444444445555555555554443222222221                    01235666666666666 


Q ss_pred             CchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          328 SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       328 ~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      .+|..+..++ +|+.|++++|+-...+|..+..+++|
T Consensus       860 ~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        860 EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCC
Confidence            6666666666 57777777743333555555554443

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.67  E-value=2.4e-18  Score=152.48  Aligned_cols=219  Identities=24%  Similarity=0.235  Sum_probs=163.3

Q ss_pred             ccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEe-eCCcCCCccCcCCCCCCCCcEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRL-GDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~l-s~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ++....++|..|.|+...+..+... .++.++|+.|+|+.+.|++|.++.+|..|-+ ++|+|+....+.|+++..|+-|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            3445667788888865555555443 5677888888888888888888877766654 4488887777778888888888


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-----------------------
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-----------------------  279 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------  279 (365)
                      .+.-|++.-...+.|..+++|..|.+-+|.+.......+..+..++++.+..|.+..                       
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            888888877777788888888888888888874333477777777777776665110                       


Q ss_pred             --------------------------------------CC-CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEEC
Q 045705          280 --------------------------------------LI-PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINL  320 (365)
Q Consensus       280 --------------------------------------~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  320 (365)
                                                            +. ...|.++++|++|+|++|+++++-+.+|.+...+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence                                                  00 013667899999999999998888899999999999999


Q ss_pred             cCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          321 SLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       321 ~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ..|++...-...|.++. .|+.|+|.+|+|+...|..|..+.+|
T Consensus       306 ~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             CcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccccee
Confidence            99999844444455555 79999999999998888888777665

>PLN03210 Resistant to P

Probab=99.66  E-value=2.2e-15  Score=159.24  Aligned_cols=212  Identities=23%  Similarity=0.239  Sum_probs=139.5

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      ..|+.|++++|.+............++.++|+.+.....+|. ++.+++|+.|++++|.....+|..+.++++|+.|+++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            467777777777643322222223456667766554444453 6667778888887776555777777777888888887


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC--------------------
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF--------------------  285 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--------------------  285 (365)
                      +|.....+|..+ .+++|+.|++++|.....+|..   ..+|+.|++++|.+.. +|..+                    
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence            765444566554 6777888888777655454432   3567788888887653 33221                    


Q ss_pred             ----------cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhcc------------------
Q 045705          286 ----------GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT------------------  337 (365)
Q Consensus       286 ----------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~------------------  337 (365)
                                ...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .++                  
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence                      112478888999888777889999999999999999986444666443 222                  


Q ss_pred             --CCCcEEEccCccccccCChhhhcCCCCC
Q 045705          338 --NSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       338 --~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                        .+|+.|++++|.++ .+|.++..+++|.
T Consensus       844 ~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~  872 (1153)
T PLN03210        844 ISTNISDLNLSRTGIE-EVPWWIEKFSNLS  872 (1153)
T ss_pred             cccccCEeECCCCCCc-cChHHHhcCCCCC
Confidence              24666666667776 6777777777663

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=6.8e-16  Score=153.17  Aligned_cols=87  Identities=26%  Similarity=0.304  Sum_probs=61.2

Q ss_pred             CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705          266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL  345 (365)
Q Consensus       266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l  345 (365)
                      +|+.|++++|.+++ +|..   .++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..+..++ +|+.|++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNL  452 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhcc-CCCeEEC
Confidence            46666666666663 3322   2457777777777754 3432   246778888888888 7888888887 7999999


Q ss_pred             cCccccccCChhhhcCC
Q 045705          346 SSNHIVGEIPLELRKHS  362 (365)
Q Consensus       346 ~~n~l~~~~p~~l~~l~  362 (365)
                      ++|++++..|..+.++.
T Consensus       453 s~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        453 EGNPLSERTLQALREIT  469 (788)
T ss_pred             CCCCCCchHHHHHHHHh
Confidence            99999988888775543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=8.1e-16  Score=153.30  Aligned_cols=189  Identities=24%  Similarity=0.359  Sum_probs=114.5

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .|+.|++++|.+. .+|.... ..++.++|+.|++. .+|..+.  .+|+.|++++|.++ .+|..+.  ++|+.|++++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~-~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP-DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD  292 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh-ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence            4666666666654 2333221 23455666666665 3444443  35666666666666 3444332  3566666666


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.++ .+|..+.  ++|+.|++++|.+. .+|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|
T Consensus       293 N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP  362 (754)
T PRK15370        293 NSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLP  362 (754)
T ss_pred             Cccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCC
Confidence            6665 3443332  35666666666666 334332  2567788888887775 454443  57888888888875 345


Q ss_pred             hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      ..+.  +.|+.|+|++|.++ .+|..+..   +|+.|++++|+++ .+|..+..
T Consensus       363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~~---sL~~LdLs~N~L~-~LP~sl~~  409 (754)
T PRK15370        363 ETLP--PTITTLDVSRNALT-NLPENLPA---ALQIMQASRNNLV-RLPESLPH  409 (754)
T ss_pred             hhhc--CCcCEEECCCCcCC-CCCHhHHH---HHHHHhhccCCcc-cCchhHHH
Confidence            4443  57888888888888 66765532   5788888888887 66665544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.64  E-value=8.6e-18  Score=163.05  Aligned_cols=197  Identities=31%  Similarity=0.335  Sum_probs=105.6

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      +..|+.+|+|+|.+++. |.+... ..++.+....|.+. .+|..+..+++|+.|++.+|.+. .+|....+++.|++|+
T Consensus       240 p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             cccceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence            33567777777776443 343332 24455666666663 45555555555555555555555 4444455555555555


Q ss_pred             cccCcCC-------------------------------------------------CcchhhhcCCCCCCEEEcccCcCC
Q 045705          224 LDSNALS-------------------------------------------------GSILNEIGNLKSLYYLELTSNTLS  254 (365)
Q Consensus       224 Ls~n~l~-------------------------------------------------~~~~~~l~~l~~L~~L~L~~n~l~  254 (365)
                      |..|.+.                                                 ...-..+.+..+|+.|+|++|++.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            5555554                                                 333333344445555555555554


Q ss_pred             CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCC-chhHh
Q 045705          255 GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS-IPLSL  333 (365)
Q Consensus       255 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l  333 (365)
                      ......+.++..|++|+||+|+++ .+|..+..+..|++|...+|.+ ...| .+..++.|+.+|++.|+++.. +|...
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence            333334444445555555555554 2344444455555555555554 2334 566777788888888887743 23222


Q ss_pred             hhccCCCcEEEccCcc
Q 045705          334 TNLTNSLEVVCLSSNH  349 (365)
Q Consensus       334 ~~~~~~L~~L~l~~n~  349 (365)
                       .. +.|++||++||.
T Consensus       474 -p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  474 -PS-PNLKYLDLSGNT  487 (1081)
T ss_pred             -CC-cccceeeccCCc
Confidence             11 368888888886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=4.3e-16  Score=155.24  Aligned_cols=186  Identities=20%  Similarity=0.346  Sum_probs=94.1

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .++.|++++|.+.. +|.... ..++.++++.|+++. +|..+.  .+|+.|++++|.+. .+|..+.  .+|++|++++
T Consensus       200 ~L~~L~Ls~N~Lts-LP~~l~-~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~  271 (754)
T PRK15370        200 QITTLILDNNELKS-LPENLQ-GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH  271 (754)
T ss_pred             CCcEEEecCCCCCc-CChhhc-cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence            45566666666543 333222 244555666665552 343332  34566666666665 3444332  3566666666


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.++ .+|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|++++|.++. +|..+.  ++|+.|++++|.++. +|
T Consensus       272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        272 NKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CC
Confidence            6665 3444432  35666666666655 2333221  345566666666653 232221  456666666666543 33


Q ss_pred             hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh
Q 045705          307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE  357 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~  357 (365)
                      ..+.  ++|+.|++++|+++ .+|..+.   .+|+.|++++|.++ .+|..
T Consensus       342 ~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        342 ASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             hhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC-CCCHh
Confidence            3332  45666666666665 4554331   24666666666665 44443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=1.1e-16  Score=146.77  Aligned_cols=211  Identities=22%  Similarity=0.227  Sum_probs=145.9

Q ss_pred             cccccceeeeccCCCCCCC--c----chhhh-ccccccceecccccccccchhhhhCCCC---CcEEEeeCCcCCC----
Q 045705          142 VMFSMLFHVLDFPHTAYSD--S----MEEAH-VTWPTWLLYLDINAISGSILDEIRSLKS---LFNLRLGDNTLSG----  207 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~--~----~~~~~-~~~~~~~l~L~~n~l~~~~~~~~~~l~~---L~~L~ls~n~i~~----  207 (365)
                      +...+.++.++++++.+.+  .    ++..+ ....++.++++.|.+....+..+..+.+   |+.|++++|.+.+    
T Consensus        47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~  126 (319)
T cd00116          47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR  126 (319)
T ss_pred             HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence            3445568889999887752  1    11111 1235667788888887666666666555   9999999998873    


Q ss_pred             ccCcCCCCC-CCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCC
Q 045705          208 SIPLSLGNL-TNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLS  278 (365)
Q Consensus       208 ~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  278 (365)
                      .+...+..+ ++|++|++++|.+++.    ++..+..+.+|++|++++|.+.+.    ++..+...++|+.|++++|.+.
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            233345566 7899999999988742    344566778899999999988742    2334455678999999999887


Q ss_pred             CC----CCccCcCCCccceEEeeccccCCcchhhcC-----CCCCCCeEECcCCcCCC----CchhHhhhccCCCcEEEc
Q 045705          279 GL----IPPSFGNLTNLTTLYVYKNSIFGSILDEIG-----NLKSLSNINLSLNKLNG----SIPLSLTNLTNSLEVVCL  345 (365)
Q Consensus       279 ~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~----~~p~~l~~~~~~L~~L~l  345 (365)
                      +.    +...+..+++|++|++++|.+.+.....+.     ..+.|++|++++|.+++    .+...+...+ +|+.+++
T Consensus       207 ~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-~L~~l~l  285 (319)
T cd00116         207 DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDL  285 (319)
T ss_pred             hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-CccEEEC
Confidence            44    234556778899999999988763332221     24789999999999873    2334444554 7999999


Q ss_pred             cCcccccc
Q 045705          346 SSNHIVGE  353 (365)
Q Consensus       346 ~~n~l~~~  353 (365)
                      ++|.++..
T Consensus       286 ~~N~l~~~  293 (319)
T cd00116         286 RGNKFGEE  293 (319)
T ss_pred             CCCCCcHH
Confidence            99999854

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=1e-17  Score=148.51  Aligned_cols=209  Identities=23%  Similarity=0.210  Sum_probs=159.8

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccc--cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTW--PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      +...+.|++||||+|+|+...|+.+.+.  ..+++..++|+|+...-+.|+++..|+.|.+.-|.+.-+..+.|..+++|
T Consensus        87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence            4556689999999999999999888765  34556666799987777788888888888887777776667777777777


Q ss_pred             cEEEcccCcCCCcchhhhcCCCCCCEEEcccCc-----------------------------------------------
Q 045705          220 ATLYLDSNALSGSILNEIGNLKSLYYLELTSNT-----------------------------------------------  252 (365)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-----------------------------------------------  252 (365)
                      ..|.+.+|.+..+.-..|..+..++.+.+..|.                                               
T Consensus       167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c  246 (498)
T KOG4237|consen  167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC  246 (498)
T ss_pred             chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence            777777777663333355666666655554442                                               


Q ss_pred             --------------CCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCe
Q 045705          253 --------------LSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSN  317 (365)
Q Consensus       253 --------------l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  317 (365)
                                    ..+..| ..|..+++|++|++++|+++.+-+.+|.++..++.|.|..|++...-...|.++..|+.
T Consensus       247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t  326 (498)
T KOG4237|consen  247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT  326 (498)
T ss_pred             hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence                          111111 23567889999999999999888899999999999999999997776788889999999


Q ss_pred             EECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          318 INLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       318 L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      |+|.+|+|+...|.+|..+. +|.+|++-.|++-
T Consensus       327 L~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  327 LSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFN  359 (498)
T ss_pred             eeecCCeeEEEecccccccc-eeeeeehccCccc
Confidence            99999999977777777776 7999999888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.60  E-value=7.1e-15  Score=146.01  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=45.7

Q ss_pred             ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +|+.|++++|.+.. +|..   .++|+.|++++|.++ .+|..    +.+|+.|++++|+++ .+|..++++++|.
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence            56667777776653 3322   246778888888887 56643    235778888888888 7888888887763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.59  E-value=4.1e-17  Score=158.38  Aligned_cols=212  Identities=27%  Similarity=0.333  Sum_probs=145.7

Q ss_pred             ccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ...+.++.|+.++|.+. .....+....++.+++++|+++. +|+++..+.+|+.+++.+|+++ .+|..+....+|+.|
T Consensus       216 ~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL  292 (1081)
T ss_pred             ecCcchheeeeccCcce-eeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence            44456888888888886 44444555677888999999985 5699999999999999999997 788888888999999


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC--------------------------CCCCCCEEECCCCc
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG--------------------------NLTNLVVLELSDNK  276 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------~l~~L~~L~L~~n~  276 (365)
                      ++..|.+. .+|....++.+|++|+|..|.+. ..|+.+.                          .+..|+.|.+.+|.
T Consensus       293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             Hhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence            99999998 67778888999999999999887 3343221                          11234555555555


Q ss_pred             CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705          277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       277 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~  356 (365)
                      ++...-+.+.+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..+. .|++|...+|++. ..| 
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-~L~tL~ahsN~l~-~fP-  446 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-RLHTLRAHSNQLL-SFP-  446 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-hhHHHhhcCCcee-ech-
Confidence            55544445555666666666666664444455566666666666666666 5555555554 3555555555555 444 


Q ss_pred             hhhcCCC
Q 045705          357 ELRKHSS  363 (365)
Q Consensus       357 ~l~~l~~  363 (365)
                      .+..++.
T Consensus       447 e~~~l~q  453 (1081)
T KOG0618|consen  447 ELAQLPQ  453 (1081)
T ss_pred             hhhhcCc
Confidence            4444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=2.7e-16  Score=144.19  Aligned_cols=210  Identities=23%  Similarity=0.281  Sum_probs=151.7

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhccc----cccceecccccccc----cchhhhhCC-CCCcEEEeeCCcCCCc---
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVTW----PTWLLYLDINAISG----SILDEIRSL-KSLFNLRLGDNTLSGS---  208 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~----~~~~l~L~~n~l~~----~~~~~~~~l-~~L~~L~ls~n~i~~~---  208 (365)
                      .+...+.|+.|++++|.+.+..+..+...    .++.++++.|.+++    .+...+..+ ++|+.|++++|.+++.   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            34446689999999999976555443322    26778888888874    233455666 8999999999998842   


Q ss_pred             -cCcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCC
Q 045705          209 -IPLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSG  279 (365)
Q Consensus       209 -~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  279 (365)
                       ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.    +...+..+++|++|++++|.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             334566778999999999998742    344566678999999999988743    23446678899999999999875


Q ss_pred             CCCccCc-----CCCccceEEeeccccCC----cchhhcCCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEcc
Q 045705          280 LIPPSFG-----NLTNLTTLYVYKNSIFG----SILDEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLS  346 (365)
Q Consensus       280 ~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~  346 (365)
                      .....+.     ..+.|+.|++++|.+++    .+...+..+++|+++++++|.++..    +...+......|+.+++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            3222221     24789999999999863    2345566778999999999999954    444444442479999998


Q ss_pred             Cccc
Q 045705          347 SNHI  350 (365)
Q Consensus       347 ~n~l  350 (365)
                      +|++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            8864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1980 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=9.4e-15  Score=135.99  Aligned_cols=133  Identities=17%  Similarity=0.292  Sum_probs=121.9

Q ss_pred             hhhcCCccchhc---c---cc--ccccEEEEEEccccHHHHHccCCCCcEEEeccccCCceeeEEEEEeeccccccceec
Q 045705            4 AELNDLDEVTRL---E---GF--QTGTYLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVL   75 (365)
Q Consensus         4 ~~~~~~~~~~~~---~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~w~~~~~   75 (365)
                      .+|+|+++++|.   +   .+  .||+||++++.++|...++++..-.|.+++|++++|.+++++++.++++.- +..++
T Consensus       499 fqF~Nyrntkk~i~kk~~~e~~~~~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Pl  577 (754)
T KOG1980|consen  499 FQFQNYRNTKKRILKKEDNEAEAIPGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPL  577 (754)
T ss_pred             HhhhhhhhHHHHhhhhcccccccCCCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccc
Confidence            479999999875   1   12  489999999999999999999999999999999999999999999999999 99999


Q ss_pred             ccCCceEEeeccccccccceeeeecccccccccccccCccccceeeeeccCCCCCCCccccc
Q 045705           76 KSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKF  137 (365)
Q Consensus        76 ~~~~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~  137 (365)
                      ++..+++++||.|||...|+|+.++.+.++++.++.|+.+..++++++||..+.....+++-
T Consensus       578 kske~livq~G~Rrf~i~PlfSs~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~  639 (754)
T KOG1980|consen  578 KSKEELIVQCGFRRFDINPLFSSHTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKK  639 (754)
T ss_pred             cccceeEEEeccceEEeccccccCCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEe
Confidence            99999999999999999999998888899999999999999999999999888777766653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.47  E-value=1.6e-15  Score=140.51  Aligned_cols=178  Identities=29%  Similarity=0.433  Sum_probs=138.2

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      ...+|+.|.+. .+|..+..+..|+.+.+.+|.+. .+|.++.++..|+.|||+.|+++ ..|..++.++ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34677777776 57777777777888888888887 77778888888888888888887 6777776664 788888888


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL  331 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  331 (365)
                      +++ .+|..++...+|..||.+.|.+. .+|..++++.+|+.|.+..|.+.. +|..+.. -.|..||++.|+++ .+|.
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecch
Confidence            887 77888887788888888888887 457778888888888888888744 4555553 46788888888888 8888


Q ss_pred             HhhhccCCCcEEEccCccccccCChhhhc
Q 045705          332 SLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       332 ~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      .|..+. .|++|-|.+|+++ ..|..++.
T Consensus       229 ~fr~m~-~Lq~l~LenNPLq-SPPAqIC~  255 (722)
T KOG0532|consen  229 DFRKMR-HLQVLQLENNPLQ-SPPAQICE  255 (722)
T ss_pred             hhhhhh-hheeeeeccCCCC-CChHHHHh
Confidence            888887 7888888888888 66666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.39  E-value=2.8e-13  Score=128.03  Aligned_cols=199  Identities=35%  Similarity=0.435  Sum_probs=139.9

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCC-CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLK-SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA  228 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  228 (365)
                      .++++.|.+............+..+++..|.++. ++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4666666664444333333345667777777773 444455553 7888888888888 555567788888888888888


Q ss_pred             CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhh
Q 045705          229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE  308 (365)
Q Consensus       229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  308 (365)
                      ++ .+|......+.|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++.. .+..
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~  250 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPES  250 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccch
Confidence            87 56665557788888888888888 66665555666888888888544 345667777888888888887743 2566


Q ss_pred             cCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh
Q 045705          309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE  357 (365)
Q Consensus       309 l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~  357 (365)
                      +..++.++.|++++|.++ .++. +.... +++.|++++|.++...|..
T Consensus       251 ~~~l~~l~~L~~s~n~i~-~i~~-~~~~~-~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         251 IGNLSNLETLDLSNNQIS-SISS-LGSLT-NLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hccccccceecccccccc-cccc-ccccC-ccCEEeccCccccccchhh
Confidence            777778888888888888 5554 56665 6888888888887555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=1.9e-14  Score=133.50  Aligned_cols=165  Identities=35%  Similarity=0.498  Sum_probs=147.7

Q ss_pred             CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705          191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL  270 (365)
Q Consensus       191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  270 (365)
                      .+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++.+..|.+||++.|+++ .+|..+..++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            3455667899999999 88888888889999999999998 89999999999999999999999 7777776665 8999


Q ss_pred             ECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705          271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l  350 (365)
                      -+++|+++ .+|..++.+.+|..|+.+.|.+ ..+|..++.+.+|+.|.+..|++. .+|..+..++  |..||++.|++
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDfScNki  223 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLDFSCNKI  223 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeeecccCce
Confidence            99999998 6788888899999999999999 466788899999999999999999 8888888776  99999999999


Q ss_pred             cccCChhhhcCCCCC
Q 045705          351 VGEIPLELRKHSSLV  365 (365)
Q Consensus       351 ~~~~p~~l~~l~~L~  365 (365)
                      + .+|..|.+|+.|.
T Consensus       224 s-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQ  237 (722)
T ss_pred             e-ecchhhhhhhhhe
Confidence            9 9999999998873

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=9.2e-12  Score=123.54  Aligned_cols=113  Identities=35%  Similarity=0.479  Sum_probs=96.6

Q ss_pred             CCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705          243 LYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL  322 (365)
Q Consensus       243 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  322 (365)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67888999999888888888999999999999999888888888999999999999999888888899999999999999


Q ss_pred             CcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          323 NKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       323 N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      |.+++.+|..+.....++..+++.+|......|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999989998887654467788888887554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.24  E-value=8.1e-12  Score=118.05  Aligned_cols=180  Identities=37%  Similarity=0.443  Sum_probs=148.9

Q ss_pred             cceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      ..++.|++.+|.+....+...... .++.++++.|++. .+|..+..+++|+.|++++|.++ .+|......++|+.|++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            468999999999976655544442 7889999999998 45567889999999999999999 66655557899999999


Q ss_pred             ccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705          225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS  304 (365)
Q Consensus       225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (365)
                      ++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..++.++++++|++++|.++..
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc
Confidence            999998 67777667777999999999755 567778889999999999998874 367788899999999999999665


Q ss_pred             chhhcCCCCCCCeEECcCCcCCCCchhH
Q 045705          305 ILDEIGNLKSLSNINLSLNKLNGSIPLS  332 (365)
Q Consensus       305 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~  332 (365)
                      ..  +....+++.|++++|.++...|..
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cc--ccccCccCEEeccCccccccchhh
Confidence            44  888999999999999998554433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=5.6e-12  Score=103.67  Aligned_cols=102  Identities=29%  Similarity=0.404  Sum_probs=28.9

Q ss_pred             CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC-cCCCccceEEeeccccCCcc-hhhcCCCCCCCe
Q 045705          240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF-GNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSN  317 (365)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~  317 (365)
                      +.+|+.|++++|.++. ++ .+..+++|++|++++|+++.. .+.+ ..+++|++|++++|+|.+.. -..+..+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            3444444444444442 21 233444455555555555432 1112 23445555555555543311 133444555556


Q ss_pred             EECcCCcCCCCc---hhHhhhccCCCcEEEc
Q 045705          318 INLSLNKLNGSI---PLSLTNLTNSLEVVCL  345 (365)
Q Consensus       318 L~L~~N~l~~~~---p~~l~~~~~~L~~L~l  345 (365)
                      |+|.+|+++..-   ...+..+| +|+.||-
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLP-SLKVLDG  147 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-T-T-SEETT
T ss_pred             eeccCCcccchhhHHHHHHHHcC-hhheeCC
Confidence            666666555221   12233444 4665543

>PLN03150 hypothetical protein; Provisional

Probab=99.21  E-value=3.1e-11  Score=119.78  Aligned_cols=110  Identities=35%  Similarity=0.520  Sum_probs=91.3

Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  298 (365)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccCCcchhhcCCC-CCCCeEECcCCcCCCC
Q 045705          299 NSIFGSILDEIGNL-KSLSNINLSLNKLNGS  328 (365)
Q Consensus       299 n~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~  328 (365)
                      |.+.+.+|..+... .++..+++.+|.....
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccC
Confidence            88888888777653 4667788888875533

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=7.5e-12  Score=102.91  Aligned_cols=126  Identities=32%  Similarity=0.355  Sum_probs=46.6

Q ss_pred             CCCCCcEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC-CCCCCCC
Q 045705          191 SLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLV  268 (365)
Q Consensus       191 ~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~  268 (365)
                      +..+++.|+|.+|.|+.+ . .++ .+.+|+.|++++|.|+. + +.+..++.|++|++++|+++. +...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence            344678888888888743 2 344 46778888888888874 2 357778888888888888873 43333 3577888


Q ss_pred             EEECCCCcCCCCC-CccCcCCCccceEEeeccccCCcc---hhhcCCCCCCCeEECc
Q 045705          269 VLELSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSI---LDEIGNLKSLSNINLS  321 (365)
Q Consensus       269 ~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~  321 (365)
                      +|++++|++.... -..++.+++|+.|++.+|.+....   ...+..+++|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888888886541 245567788888888888876432   2345667888887743

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=1.5e-12  Score=112.28  Aligned_cols=131  Identities=28%  Similarity=0.352  Sum_probs=95.4

Q ss_pred             CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEE
Q 045705          191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL  270 (365)
Q Consensus       191 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  270 (365)
                      ..+.|+.+|||+|.|+ .+..+..-+|+++.|++|+|.|..  .+.+..+++|+.|||++|.++ .+...-..+.++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3456788888888887 566677777888888888888863  334777888888888888877 444444456778888


Q ss_pred             ECCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCC
Q 045705          271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~  327 (365)
                      .|++|.+...  +.++++-+|..||+++|+|.... ...+++++.|+++.|.+|++.+
T Consensus       358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            8888887643  56667777888888888875421 3567778888888888888873

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=6.2e-12  Score=108.58  Aligned_cols=131  Identities=28%  Similarity=0.326  Sum_probs=107.4

Q ss_pred             CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705          215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL  294 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  294 (365)
                      ..+.|+++|||+|.|+ .+..+..-.|.++.|++++|.+. .+. .+..+++|+.||||+|.++. +...-.++-++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence            3467999999999998 67778888999999999999998 333 38889999999999999984 34445578899999


Q ss_pred             EeeccccCCcchhhcCCCCCCCeEECcCCcCCCC-chhHhhhccCCCcEEEccCccccc
Q 045705          295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGS-IPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      .|+.|.+.+.  ..+..+-+|..||+++|+|... --..++++| -|+.+.|.+|++.+
T Consensus       358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG  413 (490)
T ss_pred             ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence            9999998433  5667788899999999999731 234678888 69999999999984

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=7.9e-12  Score=109.96  Aligned_cols=199  Identities=16%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             cccccccceeeeccCCCCCCCcchhhhcc-----ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCC
Q 045705          140 QSVMFSMLFHVLDFPHTAYSDSMEEAHVT-----WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG  214 (365)
Q Consensus       140 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~  214 (365)
                      ..+..++.|+++|||+|.|....+..+..     ..++.++|.+|++.......++.  .|..|.         .....+
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~  154 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAA  154 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccC
Confidence            33444447999999999987655543321     24455666666654322222111  000000         000112


Q ss_pred             CCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCC----CC
Q 045705          215 NLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGL----IP  282 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~  282 (365)
                      .-++|+++....|.+...    +...|...+.|+.+.++.|.+...    +...+..+++|++|||.+|.++..    +.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            234555555555555421    223344455566666666655411    112345556666666666665533    22


Q ss_pred             ccCcCCCccceEEeeccccCCcchhh----c-CCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEccCccc
Q 045705          283 PSFGNLTNLTTLYVYKNSIFGSILDE----I-GNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       283 ~~l~~l~~L~~L~L~~n~l~~~~~~~----l-~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~~n~l  350 (365)
                      ..+..++.|+.|++++|.+......+    + ...+.|+.|.+.+|.++..    +...+...+ .|..|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhcCCcccc
Confidence            34445556666666666655432222    2 2345666666666666531    122233333 566666666666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=2.2e-11  Score=107.22  Aligned_cols=206  Identities=19%  Similarity=0.207  Sum_probs=144.0

Q ss_pred             cceeeeccCCCCCCCcchhhhccc-----cccceecccccccc----cchh-------hhhCCCCCcEEEeeCCcCCCcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTW-----PTWLLYLDINAISG----SILD-------EIRSLKSLFNLRLGDNTLSGSI  209 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~-----~~~~l~L~~n~l~~----~~~~-------~~~~l~~L~~L~ls~n~i~~~~  209 (365)
                      ..++.++||+|.+...........     .++..+++ +-++|    .+|.       ++..+++|++||||+|-+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            368899999999965444433322     12222222 12222    3343       3345679999999999987544


Q ss_pred             CcC----CCCCCCCcEEEcccCcCCCcchhh-------------hcCCCCCCEEEcccCcCCCCC----cccCCCCCCCC
Q 045705          210 PLS----LGNLTNLATLYLDSNALSGSILNE-------------IGNLKSLYYLELTSNTLSGSI----PLPLGNLTNLV  268 (365)
Q Consensus       210 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~  268 (365)
                      +..    +..+..|++|.|.+|.+.......             ...-+.|+++...+|++....    ...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            443    456789999999999986322222             234578999999999987322    23466778999


Q ss_pred             EEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhH----hhhc
Q 045705          269 VLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLS----LTNL  336 (365)
Q Consensus       269 ~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~----l~~~  336 (365)
                      .+.++.|.|...    ....|..+++|+.|||++|.++..    +...+..+++|+.|++++|.+...-..+    +...
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            999999988633    234677899999999999988653    3467788899999999999998644333    3333


Q ss_pred             cCCCcEEEccCccccc
Q 045705          337 TNSLEVVCLSSNHIVG  352 (365)
Q Consensus       337 ~~~L~~L~l~~n~l~~  352 (365)
                      .++|++|++.+|.++.
T Consensus       269 ~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  269 APSLEVLELAGNEITR  284 (382)
T ss_pred             CCCCceeccCcchhHH
Confidence            3479999999999983

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=8.1e-11  Score=106.47  Aligned_cols=219  Identities=23%  Similarity=0.140  Sum_probs=144.7

Q ss_pred             CccccccccccccccceeeeccCCCCCCCcchh--hhccccccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCC
Q 045705          132 SCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEE--AHVTWPTWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSG  207 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~~~~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~  207 (365)
                      ++.+..+..--+....|+.+.|.+.........  .......+.++|+.|-+..-  +.....++++|+.|+++.|++.-
T Consensus       107 ~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  107 FIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             EecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence            344444443334455677777777666433321  11122456678888777642  33455788999999999998873


Q ss_pred             ccCcCC-CCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCC-Ccc
Q 045705          208 SIPLSL-GNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLI-PPS  284 (365)
Q Consensus       208 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~  284 (365)
                      ...... ..+++|+.|.++.|.++...- .....+|+|+.|+|..|...........-+..|++|||++|.+.... -..
T Consensus       187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~  266 (505)
T KOG3207|consen  187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK  266 (505)
T ss_pred             CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence            322222 246789999999999874322 33467899999999999643344444555778999999999887442 245


Q ss_pred             CcCCCccceEEeeccccCCcc-hhh-----cCCCCCCCeEECcCCcCCCCch--hHhhhccCCCcEEEccCccccc
Q 045705          285 FGNLTNLTTLYVYKNSIFGSI-LDE-----IGNLKSLSNINLSLNKLNGSIP--LSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       285 l~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~N~l~~~~p--~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      .+.++.|+.|+++.+.+.... |+.     ....++|++|++..|++. ..+  ..+..++ +|+.|.+..|.++.
T Consensus       267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~-nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLE-NLKHLRITLNYLNK  340 (505)
T ss_pred             cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccc-hhhhhhcccccccc
Confidence            677889999999999886532 222     345678999999999996 222  3444455 68888888888773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=3.9e-10  Score=76.42  Aligned_cols=61  Identities=39%  Similarity=0.518  Sum_probs=42.2

Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL  253 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  253 (365)
                      ++|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777765556677777777777777777666666677777777777777654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=7.8e-10  Score=74.93  Aligned_cols=59  Identities=42%  Similarity=0.548  Sum_probs=30.2

Q ss_pred             CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCc
Q 045705          266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK  324 (365)
Q Consensus       266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~  324 (365)
                      +|++|++++|+++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555554444455555555555555555544444455555555555555554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=5.9e-10  Score=100.98  Aligned_cols=184  Identities=23%  Similarity=0.261  Sum_probs=127.9

Q ss_pred             ccccceeeeccCCCCCCCcchhhhcc---ccccceecccccccccchhh-hhCCCCCcEEEeeCCcCCCc-cCcCCCCCC
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVT---WPTWLLYLDINAISGSILDE-IRSLKSLFNLRLGDNTLSGS-IPLSLGNLT  217 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~---~~~~~l~L~~n~l~~~~~~~-~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~  217 (365)
                      ..++.++.||||+|-+..-.+-....   ..++.|+|+.|.+....... -..+++|+.|.++.|.++.. +......+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            34557889999999776544433222   25677888888876332222 13568899999999998832 222345688


Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc--ccCCCCCCCCEEECCCCcCCCCC-Ccc-----CcCCC
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP--LPLGNLTNLVVLELSDNKLSGLI-PPS-----FGNLT  289 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~-~~~-----l~~l~  289 (365)
                      +|+.|+|..|..-........-+..|++|+|++|.+.. .+  ...+.++.|..|+++.|.+..+. |+.     ....+
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence            99999999995333444455567789999999998873 33  35677889999999999887652 222     24568


Q ss_pred             ccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCC
Q 045705          290 NLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       290 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~  327 (365)
                      +|+.|++..|++.+.. ...+..+.+|+.|.+..|.++.
T Consensus       302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            8999999999985431 2445566788888888888863

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=3.2e-10  Score=107.71  Aligned_cols=152  Identities=32%  Similarity=0.362  Sum_probs=62.5

Q ss_pred             hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCccc-CCCCCCC
Q 045705          189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP-LGNLTNL  267 (365)
Q Consensus       189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L  267 (365)
                      +..+.+|++|++++|.|+...+  +..++.|+.|++++|.|+.  ...+..+..|+.+++++|.+....+ . ...+.++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l  188 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEN-DELSELISL  188 (414)
T ss_pred             hhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhh-hhhhhccch
Confidence            3344455555555555543322  3334445555555555532  2233334455555555555442211 1 2344444


Q ss_pred             CEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCC--CCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705          268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKS--LSNINLSLNKLNGSIPLSLTNLTNSLEVVCL  345 (365)
Q Consensus       268 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l  345 (365)
                      +.+.+.+|.+...  ..+..+..+..+++..|.+...-  .+..+..  |+.+++++|.+. ..+..+..+. .+..|++
T Consensus       189 ~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~-~l~~l~~  262 (414)
T KOG0531|consen  189 EELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLK-NLPVLDL  262 (414)
T ss_pred             HHHhccCCchhcc--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccc-cccccch
Confidence            4445554444322  11222222222333333332211  1111111  555555555555 3322233333 4555555


Q ss_pred             cCcccc
Q 045705          346 SSNHIV  351 (365)
Q Consensus       346 ~~n~l~  351 (365)
                      .+|++.
T Consensus       263 ~~n~~~  268 (414)
T KOG0531|consen  263 SSNRIS  268 (414)
T ss_pred             hhcccc
Confidence            555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=1.3e-09  Score=103.57  Aligned_cols=169  Identities=31%  Similarity=0.320  Sum_probs=123.5

Q ss_pred             ceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCc
Q 045705          173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT  252 (365)
Q Consensus       173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  252 (365)
                      .+.+..|.+.. +-..+..+.+|+.|++.+|.|..+ ...+..+++|++|++++|.|+.  -..+..++.|+.|++++|.
T Consensus        76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             hhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccc--ccchhhccchhhheeccCc
Confidence            34456666653 344467788999999999999844 3337789999999999999975  3446677789999999999


Q ss_pred             CCCCCcccCCCCCCCCEEECCCCcCCCCCC-ccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705          253 LSGSIPLPLGNLTNLVVLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL  331 (365)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  331 (365)
                      +...  ..+..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++..-+.
T Consensus       152 i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l  226 (414)
T KOG0531|consen  152 ISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL  226 (414)
T ss_pred             chhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc
Confidence            9832  345568899999999999986533 2 57788999999999988544  3344445566668999998832221


Q ss_pred             HhhhccCCCcEEEccCcccc
Q 045705          332 SLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       332 ~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ...... +|+.+++++|++.
T Consensus       227 ~~~~~~-~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  227 NELVML-HLRELYLSGNRIS  245 (414)
T ss_pred             ccchhH-HHHHHhcccCccc
Confidence            111111 3889999999998

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.67  E-value=5.3e-10  Score=107.10  Aligned_cols=127  Identities=31%  Similarity=0.275  Sum_probs=76.9

Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      +|.+.+.++|.+. ....++.-++.|+.|+|++|+++..  +.+..++.|++|||+.|.++.+.--.-.++ +|+.|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence            4666666777665 4555666667777777777777632  256667777777777777764321112222 37777777


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcEEEccCcccc
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      +|.++..  ..+.++.+|+.||+++|-+.+.- -..+..+. .|+.|+|.||++-
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCccc
Confidence            7776433  34566777777777777766421 11233344 5777777777664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=3.4e-08  Score=100.84  Aligned_cols=94  Identities=34%  Similarity=0.388  Sum_probs=58.7

Q ss_pred             ccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCccc
Q 045705          181 ISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP  260 (365)
Q Consensus       181 l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  260 (365)
                      +.......|..++.|++|||++|.--+.+|..++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.-...+|..
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence            33334444566667777777766555566666666667777777777666 66666777777777776666554444555


Q ss_pred             CCCCCCCCEEECCCC
Q 045705          261 LGNLTNLVVLELSDN  275 (365)
Q Consensus       261 ~~~l~~L~~L~L~~n  275 (365)
                      ...+++|++|.+..-
T Consensus       638 ~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhcccccEEEeecc
Confidence            555666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.48  E-value=1.5e-09  Score=104.10  Aligned_cols=130  Identities=28%  Similarity=0.317  Sum_probs=103.9

Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcc-cCCCCCCCCEEE
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLE  271 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~  271 (365)
                      ..|...+.++|.+. ....++.-++.|+.|+|++|++..  .+.+..+++|++|||+.|.+. .+|. ....+ .|+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence            46788899999998 667788888999999999999974  448899999999999999998 4444 22233 399999


Q ss_pred             CCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCCCch
Q 045705          272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       272 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      +.+|.++..  ..+.++.+|+.||+++|-+.+.- ...+..+..|+.|.|.+|++- .-|
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p  295 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP  295 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence            999999855  56778999999999999886532 234556778999999999997 444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.1e-08  Score=88.59  Aligned_cols=177  Identities=20%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             ccceecccccccccc-hhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc-CCCcch-hhhcCCCCCCEEE
Q 045705          171 TWLLYLDINAISGSI-LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA-LSGSIL-NEIGNLKSLYYLE  247 (365)
Q Consensus       171 ~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~l~~l~~L~~L~  247 (365)
                      ++.++|+...|+..- ...+..+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+. ++.... --+..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            445556655555322 2334556666666666666666665666666666677766654 331111 1245566666667


Q ss_pred             cccCcCCCCCcc-cCCCC-CCCCEEECCCCcCC---CCCCccCcCCCccceEEeeccc-cCCcchhhcCCCCCCCeEECc
Q 045705          248 LTSNTLSGSIPL-PLGNL-TNLVVLELSDNKLS---GLIPPSFGNLTNLTTLYVYKNS-IFGSILDEIGNLKSLSNINLS  321 (365)
Q Consensus       248 L~~n~l~~~~~~-~~~~l-~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~  321 (365)
                      ++.|.+...... .+... .+|+.|+++++.-.   ..+..-...+++|.+|||++|. ++.....+|.+++.|++|+++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            766665532211 11111 35666666665321   0111122356677777777653 333334455666777777777


Q ss_pred             CCcCCCCchhH---hhhccCCCcEEEccCccc
Q 045705          322 LNKLNGSIPLS---LTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       322 ~N~l~~~~p~~---l~~~~~~L~~L~l~~n~l  350 (365)
                      .|..  .+|..   +...| +|.+||+.++--
T Consensus       347 RCY~--i~p~~~~~l~s~p-sl~yLdv~g~vs  375 (419)
T KOG2120|consen  347 RCYD--IIPETLLELNSKP-SLVYLDVFGCVS  375 (419)
T ss_pred             hhcC--CChHHeeeeccCc-ceEEEEeccccC
Confidence            6653  23332   23344 577777766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=2.6e-07  Score=79.28  Aligned_cols=209  Identities=17%  Similarity=0.127  Sum_probs=134.5

Q ss_pred             ccceeeeccCCCCCCCcchhhhccccccceeccccc----ccc----c-------chhhhhCCCCCcEEEeeCCcCCCcc
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINA----ISG----S-------ILDEIRSLKSLFNLRLGDNTLSGSI  209 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~----l~~----~-------~~~~~~~l~~L~~L~ls~n~i~~~~  209 (365)
                      ...+..+|||+|.|...........-....+|..-+    ++|    .       ...++.+|++|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            446888999999997665554443322222222211    122    2       2344567899999999999988665


Q ss_pred             CcC----CCCCCCCcEEEcccCcCCCcchhhh-------------cCCCCCCEEEcccCcCCCCCcc----cCCCCCCCC
Q 045705          210 PLS----LGNLTNLATLYLDSNALSGSILNEI-------------GNLKSLYYLELTSNTLSGSIPL----PLGNLTNLV  268 (365)
Q Consensus       210 ~~~----~~~l~~L~~L~Ls~n~l~~~~~~~l-------------~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~  268 (365)
                      |..    ++.-..|.+|.+++|.+....-..+             ..-|.|++.....|++......    .+..-..|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            544    4566789999999998753222222             2457799999999988632111    122335788


Q ss_pred             EEECCCCcCCCCCC-----ccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhHhhh----
Q 045705          269 VLELSDNKLSGLIP-----PSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN----  335 (365)
Q Consensus       269 ~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~----  335 (365)
                      ++.+..|.|.-...     ..+..+.+|+.|+|++|.++-.    +..++..++.|+.|.+.+|-++..-...+..    
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            88898888763311     1234567899999999987543    3356677788899999999888654443332    


Q ss_pred             --ccCCCcEEEccCccccccC
Q 045705          336 --LTNSLEVVCLSSNHIVGEI  354 (365)
Q Consensus       336 --~~~~L~~L~l~~n~l~~~~  354 (365)
                        .+ +|..|...+|.+.+.+
T Consensus       269 ~~~p-~l~~L~~~Yne~~~~~  288 (388)
T COG5238         269 KFVP-NLMPLPGDYNERRGGI  288 (388)
T ss_pred             hcCC-CccccccchhhhcCce
Confidence              23 6888888888766543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=1.4e-07  Score=96.29  Aligned_cols=159  Identities=27%  Similarity=0.338  Sum_probs=116.2

Q ss_pred             CCCCcEEEeeCCc--CCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCE
Q 045705          192 LKSLFNLRLGDNT--LSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV  269 (365)
Q Consensus       192 l~~L~~L~ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  269 (365)
                      .++|+.|-+..|.  +.......|..++.|+.|||++|.-.+.+|..++.+-+|++|+++++.+. .+|..++++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3579999999886  66555566888999999999998876789999999999999999999998 88999999999999


Q ss_pred             EECCCCcCCCCCCccCcCCCccceEEeecccc--CCcchhhcCCCCCCCeEECcCCcC----------------------
Q 045705          270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI--FGSILDEIGNLKSLSNINLSLNKL----------------------  325 (365)
Q Consensus       270 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L~~N~l----------------------  325 (365)
                      |++..+.....+|.....+++|++|.+..-..  .......+..+.+|+.+.......                      
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence            99998887666677777799999999866542  122233444455554444322221                      


Q ss_pred             ---CCCchhHhhhccCCCcEEEccCccccc
Q 045705          326 ---NGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       326 ---~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                         ....+..+..+. +|+.|.+.++.++.
T Consensus       703 ~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  703 GCSKRTLISSLGSLG-NLEELSILDCGISE  731 (889)
T ss_pred             ccccceeeccccccc-CcceEEEEcCCCch
Confidence               002233444454 68888888887763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=1.4e-08  Score=78.08  Aligned_cols=132  Identities=20%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             CcEEEcccCcCCCcchhh---hcCCCCCCEEEcccCcCCCCCcccCC-CCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705          219 LATLYLDSNALSGSILNE---IGNLKSLYYLELTSNTLSGSIPLPLG-NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL  294 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  294 (365)
                      +..++|+.|++- .+++.   +.....|+..+|++|.+.. .|..|. ..+.+++|++++|.++ .+|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            445556666553 23333   2333445555666666663 333332 3345666666666666 345556666666666


Q ss_pred             EeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705          295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~  356 (365)
                      +++.|.+. ..|..+..+.++..|+..+|.+. .+|.++..-. ..-..++.++++.+.-|.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~-~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSS-LPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccc-cHHHHHhcCCcccccCcc
Confidence            66666663 33444555666666666666666 5555433221 233334455555554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.33  E-value=2.5e-08  Score=76.75  Aligned_cols=86  Identities=24%  Similarity=0.337  Sum_probs=55.5

Q ss_pred             hCCCCCcEEEeeCCcCCCccCcCC-CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCC
Q 045705          190 RSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV  268 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  268 (365)
                      .....|+..+|++|.+. .+|..| ...+.+++|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-
T Consensus        50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            34456666777777777 344443 34456777777777776 56666777777777777777776 4455555566666


Q ss_pred             EEECCCCcCC
Q 045705          269 VLELSDNKLS  278 (365)
Q Consensus       269 ~L~L~~n~l~  278 (365)
                      .|+..+|.+.
T Consensus       127 ~Lds~~na~~  136 (177)
T KOG4579|consen  127 MLDSPENARA  136 (177)
T ss_pred             HhcCCCCccc
Confidence            6666666665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.5e-08  Score=87.76  Aligned_cols=57  Identities=25%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             CcEEEeeCCcCCC-ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          195 LFNLRLGDNTLSG-SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       195 L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      |++|||+...|+. ..-..+..+.+|+.|.+.++++.+.+...+..-.+|+.|+++.+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            4445555444431 11112233444555555555554444444444445555555443

>COG5177 Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=8e-07  Score=81.75  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=103.6

Q ss_pred             hhcCCccchhc------cc-cccccEEEEEEccccHHHHHccCCCCcEEE-eccccCCceeeEEEEEeeccccccceecc
Q 045705            5 ELNDLDEVTRL------EG-FQTGTYLGMEIHDVPFEMVEYFDPCHPVLV-GGIGLGKQNVGYMQARLKQHRWWHKKVLK   76 (365)
Q Consensus         5 ~~~~~~~~~~~------~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~w~~~~~~   76 (365)
                      .|+|+++.++.      ++ +++|..|+|.++ +|...++++.-..+.++ +|++..|.+..+.++.+.+|.- ++.+++
T Consensus       513 ~f~nyrn~kn~~vk~~~~~~a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~  590 (769)
T COG5177         513 FFDNYRNAKNLVVKKDNESVAPDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLK  590 (769)
T ss_pred             eccchhhhhhheecCCccccCCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCC
Confidence            57888888774      34 677999999999 99999999887776655 9999999999999999999999 999999


Q ss_pred             cCCceEEeeccccccccceeeeecc--cccccccccccCccccceeeeeccCCC
Q 045705           77 SRDPIFVSIGWRRIQTVPVYAIEDR--NGRHRMLKYTPEHMHSLAMFWGPLAPP  128 (365)
Q Consensus        77 ~~~p~~~s~gw~~~~~l~~~~l~~~--~~~~~~l~~~p~~~~~~~~~~G~i~~~  128 (365)
                      +.++.++++|-||+...|.++....  +..+++.++.++.-..++++.||+...
T Consensus       591 s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg  644 (769)
T COG5177         591 SEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFG  644 (769)
T ss_pred             cccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceecc
Confidence            9999999999999999999876433  345678888888888888999987553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=6e-07  Score=78.08  Aligned_cols=85  Identities=29%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             cccceecccccccc--cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCC-cchhhhcCCCCCCEE
Q 045705          170 PTWLLYLDINAISG--SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-SILNEIGNLKSLYYL  246 (365)
Q Consensus       170 ~~~~l~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L  246 (365)
                      ..+.++|..|.|+.  .+...+.+|+.|++|+++.|.+...+..--....+|++|-|.+..+.- .....+..+|.+++|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            45668888888874  344555788888999999888874433222456688888888877652 233445677888888


Q ss_pred             EcccCcCC
Q 045705          247 ELTSNTLS  254 (365)
Q Consensus       247 ~L~~n~l~  254 (365)
                      .++.|.+.
T Consensus       152 HmS~N~~r  159 (418)
T KOG2982|consen  152 HMSDNSLR  159 (418)
T ss_pred             hhccchhh
Confidence            88888443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.06  E-value=6.6e-06  Score=67.81  Aligned_cols=103  Identities=27%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC-cccCCCCCCCCEEEC
Q 045705          194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI-PLPLGNLTNLVVLEL  272 (365)
Q Consensus       194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L  272 (365)
                      ....+||++|.+...  +.|..++.|.+|.+.+|.|+.+.|.--.-+++|..|.+.+|.+.... -..+..+++|+.|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455566666666422  23555666666666666666544444444555666666666655111 123444555666665


Q ss_pred             CCCcCCCC---CCccCcCCCccceEEeec
Q 045705          273 SDNKLSGL---IPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       273 ~~n~l~~~---~~~~l~~l~~L~~L~L~~  298 (365)
                      -+|.....   --..+..+++|+.||.+.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            55554422   112334455555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=2.5e-05  Score=72.43  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=23.9

Q ss_pred             CCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       192 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      +.+++.|++++|.++ .+|. +  -.+|++|.+++|.--..+|+.+  ..+|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            345555555555554 3331 1  1245555555433222334333  134555555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=1.9e-06  Score=74.16  Aligned_cols=184  Identities=19%  Similarity=0.145  Sum_probs=128.1

Q ss_pred             cccceecccccccccchhh----hhCCCCCcEEEeeCCcCC---Cc-------cCcCCCCCCCCcEEEcccCcCCCcchh
Q 045705          170 PTWLLYLDINAISGSILDE----IRSLKSLFNLRLGDNTLS---GS-------IPLSLGNLTNLATLYLDSNALSGSILN  235 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~----~~~l~~L~~L~ls~n~i~---~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~  235 (365)
                      ....++|++|-|......+    +++-.+|+..+++.-...   ..       +-+++.+||+|+..+||+|.+....|.
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            3456889999987655444    445577888887753221   12       234567899999999999999876665


Q ss_pred             h----hcCCCCCCEEEcccCcCCCCCccc-------------CCCCCCCCEEECCCCcCCCCCC----ccCcCCCccceE
Q 045705          236 E----IGNLKSLYYLELTSNTLSGSIPLP-------------LGNLTNLVVLELSDNKLSGLIP----PSFGNLTNLTTL  294 (365)
Q Consensus       236 ~----l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L  294 (365)
                      .    ++.-+.|.+|.+++|.+.-.-...             ..+-+.|++.....|++..-..    ..+..-.+|+++
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v  190 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV  190 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence            4    566788999999999886222112             2245789999999999863311    223333689999


Q ss_pred             EeeccccCCcch-----hhcCCCCCCCeEECcCCcCCCC----chhHhhhccCCCcEEEccCccccccC
Q 045705          295 YVYKNSIFGSIL-----DEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSSNHIVGEI  354 (365)
Q Consensus       295 ~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~~~~~L~~L~l~~n~l~~~~  354 (365)
                      .+..|.|.....     ..+..+.+|+.|||++|-++-.    +...+...+ .|+.|.+.+|-++..-
T Consensus       191 ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G  258 (388)
T COG5238         191 KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEG  258 (388)
T ss_pred             EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhcccc
Confidence            999998865411     2334578999999999999843    233455566 5899999999887443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=5.8e-06  Score=51.47  Aligned_cols=36  Identities=42%  Similarity=0.637  Sum_probs=15.6

Q ss_pred             CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCC
Q 045705          194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS  230 (365)
Q Consensus       194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  230 (365)
                      +|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=6.8e-06  Score=51.13  Aligned_cols=36  Identities=39%  Similarity=0.614  Sum_probs=15.9

Q ss_pred             CCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          314 SLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       314 ~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      +|++|++++|+|+ .+|..+..++ +|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~-~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLP-NLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCT-TSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCC-CCCEEEecCCCCC
Confidence            3444444444444 3444444444 3444444444444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=1.1e-05  Score=66.49  Aligned_cols=125  Identities=23%  Similarity=0.216  Sum_probs=79.0

Q ss_pred             cEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705          196 FNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD  274 (365)
Q Consensus       196 ~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  274 (365)
                      +.+++.+..+..+ .. ++ ...+...+||++|.+..  -..|..++.|.+|.+.+|+|+..-|.--..+++|++|.+.+
T Consensus        22 ~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVI-EN-LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccch-hh-ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            4566666655522 11 21 23467778888888752  34567777888888888888855555444566788888888


Q ss_pred             CcCCCCC-CccCcCCCccceEEeeccccCCcc---hhhcCCCCCCCeEECcCCc
Q 045705          275 NKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSI---LDEIGNLKSLSNINLSLNK  324 (365)
Q Consensus       275 n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~N~  324 (365)
                      |.+.... ...+..+++|+.|.+-+|.+...-   .-.+..+++|+.||.+.-.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8776431 234556777888888777765431   2345667777777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=1.8e-05  Score=69.06  Aligned_cols=85  Identities=33%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             CCCCcEEEeeCCcCCCc--cCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCC
Q 045705          192 LKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLV  268 (365)
Q Consensus       192 l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  268 (365)
                      ++.++.+||.+|.|+..  +...+.++|.|++|++++|++...+-..-..+.+|++|.|.+..+.- .....+..++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            35555666666665521  22234455666666666666542221111234455555555554431 1222334455555


Q ss_pred             EEECCCCc
Q 045705          269 VLELSDNK  276 (365)
Q Consensus       269 ~L~L~~n~  276 (365)
                      +|.+|.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            55555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.88  E-value=3.1e-05  Score=60.73  Aligned_cols=123  Identities=21%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCC
Q 045705          187 DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN  266 (365)
Q Consensus       187 ~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  266 (365)
                      .+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+..+ +.......|..+++|+.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455556666666653 455455556666666666666654 4434444556665666666654 333233344555666


Q ss_pred             CCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705          267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL  315 (365)
Q Consensus       267 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  315 (365)
                      |+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666543 333334455554 555555543 2323334445444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=4.6e-06  Score=83.35  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             CCCCcEEEcccCcCCC-cchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccce
Q 045705          216 LTNLATLYLDSNALSG-SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTT  293 (365)
Q Consensus       216 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~  293 (365)
                      +|.|++|.+++-.+.. ..-....++++|..||++++.++..  ..++.+++|++|.+.+=.+.. ..-..+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4555555555544321 1122234455555555555555522  344555555555554433331 11123334555566


Q ss_pred             EEeeccccCCcc------hhhcCCCCCCCeEECcCCcCCCCchhHh
Q 045705          294 LYVYKNSIFGSI------LDEIGNLKSLSNINLSLNKLNGSIPLSL  333 (365)
Q Consensus       294 L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~N~l~~~~p~~l  333 (365)
                      ||+|........      .+.-..++.|+.||.|+..+.+.+-+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            665554332211      1122336677777777666665444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00013  Score=67.85  Aligned_cols=118  Identities=15%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccc
Q 045705          214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLT  292 (365)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~  292 (365)
                      ..+.+++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+  ..+|+.|++++| .+. .+|.      +|+
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence            34678999999999887 5562   23469999999865444666644  357999999988 444 3443      355


Q ss_pred             eEEeeccccC--CcchhhcCC------------------CCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705          293 TLYVYKNSIF--GSILDEIGN------------------LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN  348 (365)
Q Consensus       293 ~L~L~~n~l~--~~~~~~l~~------------------l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n  348 (365)
                      .|++..+...  +.+|..+..                  .++|++|++++|... .+|..   +|.+|+.|+++.|
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~---LP~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK---LPESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccc---ccccCcEEEeccc
Confidence            5555554321  122322211                  146778888877765 44432   4457888888766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.7e-05  Score=79.37  Aligned_cols=137  Identities=24%  Similarity=0.227  Sum_probs=98.5

Q ss_pred             CCCcEEEcccCcCC-Ccchhhh-cCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccce
Q 045705          217 TNLATLYLDSNALS-GSILNEI-GNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT  293 (365)
Q Consensus       217 ~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  293 (365)
                      .+|++|++++...- ..=|..+ ..+|+|+.|.+++-.+.. .......++++|..||+|+++++..  ..++.+.+|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            47888888886542 1122333 458999999999876652 2234466789999999999999865  77889999999


Q ss_pred             EEeeccccCC-cchhhcCCCCCCCeEECcCCcCCCCc--hh----HhhhccCCCcEEEccCccccccCCh
Q 045705          294 LYVYKNSIFG-SILDEIGNLKSLSNINLSLNKLNGSI--PL----SLTNLTNSLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       294 L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~--p~----~l~~~~~~L~~L~l~~n~l~~~~p~  356 (365)
                      |.+.+=.+.. ..-..+.++++|+.||+|........  ..    .-..+| .|+.||.|+..+.+.+-+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le  268 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILE  268 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHH
Confidence            9998876643 23356678999999999998776321  11    112355 799999999988765533

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.55  E-value=0.00029  Score=55.08  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             cCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCc
Q 045705          211 LSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN  290 (365)
Q Consensus       211 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  290 (365)
                      .+|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++.+++.+.+.+ .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            4455666666666653 344344445555656666666553 4433334455555566665543 333233345555555


Q ss_pred             cceEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705          291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSL  322 (365)
Q Consensus       291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  322 (365)
                      |+.+++..+ +.......|.++ .|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555555443 333333444444 555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.39  E-value=9.1e-05  Score=63.64  Aligned_cols=104  Identities=25%  Similarity=0.231  Sum_probs=61.0

Q ss_pred             hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC--cCCCcchhhhcCCCCCCEEEcccCcCCCCCcc---cCCC
Q 045705          189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN--ALSGSILNEIGNLKSLYYLELTSNTLSGSIPL---PLGN  263 (365)
Q Consensus       189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~  263 (365)
                      ...+..|+.|++.+..++..  ..+..+++|+.|.++.|  .+.+.++.....+++|++|++++|++..  +.   .+..
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence            34445666666666666522  23556777888888888  5554444444555777788888777762  22   2344


Q ss_pred             CCCCCEEECCCCcCCCCCC---ccCcCCCccceEEe
Q 045705          264 LTNLVVLELSDNKLSGLIP---PSFGNLTNLTTLYV  296 (365)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L  296 (365)
                      +.+|..|++.+|..+..-.   ..|.-+++|++|+-
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            5566777777776654311   23444556655553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.38  E-value=7.5e-05  Score=64.14  Aligned_cols=86  Identities=26%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             hhhCCCCCcEEEeeCC--cCCCccCcCCCCCCCCcEEEcccCcCCCcchhh---hcCCCCCCEEEcccCcCCCCCc---c
Q 045705          188 EIRSLKSLFNLRLGDN--TLSGSIPLSLGNLTNLATLYLDSNALSGSILNE---IGNLKSLYYLELTSNTLSGSIP---L  259 (365)
Q Consensus       188 ~~~~l~~L~~L~ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~---~  259 (365)
                      .+..+++|+.|.++.|  ++.+.++-....+++|++|++++|+|..  +..   +..+.+|..|++.+|..+..-.   .
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence            3455677888888888  5555555555566888888888888752  333   3445567777777776663111   1


Q ss_pred             cCCCCCCCCEEECCCC
Q 045705          260 PLGNLTNLVVLELSDN  275 (365)
Q Consensus       260 ~~~~l~~L~~L~L~~n  275 (365)
                      .|.-+++|++|+-.+.
T Consensus       138 vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  138 VFLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHHhhhhcccccccc
Confidence            2445667777665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=2.2e-05  Score=67.98  Aligned_cols=100  Identities=30%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCCCeE
Q 045705          240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNI  318 (365)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L  318 (365)
                      +.+.+.|+..+|.+..+  .....|+.|++|.||-|+|+..  ..|..|++|++|+|..|.|.+.. ...+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34455566666666522  2334566677777777776654  44566677777777777664432 2445667777777


Q ss_pred             ECcCCcCCCCchh-----HhhhccCCCcEEE
Q 045705          319 NLSLNKLNGSIPL-----SLTNLTNSLEVVC  344 (365)
Q Consensus       319 ~L~~N~l~~~~p~-----~l~~~~~~L~~L~  344 (365)
                      .|..|.-.+.-+.     .+..+| +|++||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLP-NLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence            7777766554332     233344 566664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=2.8e-05  Score=67.31  Aligned_cols=64  Identities=33%  Similarity=0.330  Sum_probs=32.5

Q ss_pred             hCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCC
Q 045705          190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSG  255 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~  255 (365)
                      ..|+.|++|.||-|.|+...|  +..|++|++|+|..|.|.+..- .-+.++++|+.|.|..|...+
T Consensus        38 ~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            445556666666666553322  4455556666666555542111 123455555555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.59  E-value=0.00093  Score=34.63  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=15.7

Q ss_pred             CCcEEEccCccccccCChhhhcC
Q 045705          339 SLEVVCLSSNHIVGEIPLELRKH  361 (365)
Q Consensus       339 ~L~~L~l~~n~l~~~~p~~l~~l  361 (365)
                      +|++||+++|+++ .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3778888888888 777776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.94  E-value=7.7e-05  Score=71.54  Aligned_cols=161  Identities=24%  Similarity=0.216  Sum_probs=90.3

Q ss_pred             hCCCCCcEEEeeCCcCCCcc----CcCCCCC-CCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCC----C
Q 045705          190 RSLKSLFNLRLGDNTLSGSI----PLSLGNL-TNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSG----S  256 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~~----~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~  256 (365)
                      .....|+.|++++|.+.+.-    ...+... ..+++|++..|.++..    +...+.....++.++++.|.+..    .
T Consensus       112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~  191 (478)
T KOG4308|consen  112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV  191 (478)
T ss_pred             cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence            44566666777776666221    1112222 4566666666666532    33445556667777777776631    1


Q ss_pred             CcccCC----CCCCCCEEECCCCcCCCC----CCccCcCCCc-cceEEeeccccCCcc----hhhcCCC-CCCCeEECcC
Q 045705          257 IPLPLG----NLTNLVVLELSDNKLSGL----IPPSFGNLTN-LTTLYVYKNSIFGSI----LDEIGNL-KSLSNINLSL  322 (365)
Q Consensus       257 ~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~  322 (365)
                      ++..+.    ...++++|.+++|.++..    ....+...+. +..|++..|.+.+..    ...+..+ ..++.++++.
T Consensus       192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~  271 (478)
T KOG4308|consen  192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR  271 (478)
T ss_pred             HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence            122222    355677777777776632    1123334444 666777777775431    2334444 5677888888


Q ss_pred             CcCCCCc----hhHhhhccCCCcEEEccCcccc
Q 045705          323 NKLNGSI----PLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       323 N~l~~~~----p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      |.++..-    ...+...+ .++++.++.|.+.
T Consensus       272 nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  272 NSITEKGVRDLAEVLVSCR-QLEELSLSNNPLT  303 (478)
T ss_pred             CCccccchHHHHHHHhhhH-HHHHhhcccCccc
Confidence            8887543    33344455 6778888888776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.50  E-value=0.0072  Score=31.22  Aligned_cols=11  Identities=36%  Similarity=0.386  Sum_probs=4.5

Q ss_pred             cEEEeeCCcCC
Q 045705          196 FNLRLGDNTLS  206 (365)
Q Consensus       196 ~~L~ls~n~i~  206 (365)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.38  E-value=0.0003  Score=67.57  Aligned_cols=166  Identities=28%  Similarity=0.295  Sum_probs=113.9

Q ss_pred             CcEEEeeCCcCCCc----cCcCCCCCCCCcEEEcccCcCCCcchhh----hcCC-CCCCEEEcccCcCCCC----CcccC
Q 045705          195 LFNLRLGDNTLSGS----IPLSLGNLTNLATLYLDSNALSGSILNE----IGNL-KSLYYLELTSNTLSGS----IPLPL  261 (365)
Q Consensus       195 L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~----~~~~~  261 (365)
                      +..|.|.+|.+...    +...+...+.|+.|++++|.+.+.....    +... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66777888877743    3344667789999999999997433332    3333 5678889988888743    34456


Q ss_pred             CCCCCCCEEECCCCcCCCC----CCccCc----CCCccceEEeeccccCCcc----hhhcCCCCC-CCeEECcCCcCCCC
Q 045705          262 GNLTNLVVLELSDNKLSGL----IPPSFG----NLTNLTTLYVYKNSIFGSI----LDEIGNLKS-LSNINLSLNKLNGS  328 (365)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~----~~~~l~----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~-L~~L~L~~N~l~~~  328 (365)
                      .....++.++++.|.+...    ++..+.    ...++++|.+.+|.++...    ...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            6678899999999988422    233333    4778999999999886432    234455555 77799999999854


Q ss_pred             c----hhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          329 I----PLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       329 ~----p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      .    ...+......++.++++.|.|++.-...+.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~  284 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE  284 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence            2    3333344236799999999999766555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.90  E-value=0.039  Score=26.45  Aligned_cols=13  Identities=31%  Similarity=0.467  Sum_probs=5.1

Q ss_pred             CCcEEEccCcccc
Q 045705          339 SLEVVCLSSNHIV  351 (365)
Q Consensus       339 ~L~~L~l~~n~l~  351 (365)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555544

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.32  E-value=0.15  Score=27.35  Aligned_cols=13  Identities=38%  Similarity=0.616  Sum_probs=5.9

Q ss_pred             CCCeEECcCCcCC
Q 045705          314 SLSNINLSLNKLN  326 (365)
Q Consensus       314 ~L~~L~L~~N~l~  326 (365)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.32  E-value=0.15  Score=27.35  Aligned_cols=13  Identities=38%  Similarity=0.616  Sum_probs=5.9

Q ss_pred             CCCeEECcCCcCC
Q 045705          314 SLSNINLSLNKLN  326 (365)
Q Consensus       314 ~L~~L~L~~N~l~  326 (365)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.06  E-value=0.0037  Score=53.07  Aligned_cols=86  Identities=20%  Similarity=0.171  Sum_probs=44.3

Q ss_pred             hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCC
Q 045705          189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV  268 (365)
Q Consensus       189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  268 (365)
                      +......+.||++.|++. .....|.-++.+..|+++.|++. ..|..++.+..++.+++..|..+ ..|.+++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344445555555555554 33334444455555555555554 44555555555555555555554 4455555555555


Q ss_pred             EEECCCCcC
Q 045705          269 VLELSDNKL  277 (365)
Q Consensus       269 ~L~L~~n~l  277 (365)
                      .+++.+|.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=0.036  Score=46.23  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=40.7

Q ss_pred             CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCc-CCCccceEEeecc-ccCCcchhhcCCCCCCCeE
Q 045705          242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFG-NLTNLTTLYVYKN-SIFGSILDEIGNLKSLSNI  318 (365)
Q Consensus       242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L  318 (365)
                      .++.++-++..|..+--+.+..++.++.|.+.+|.--+. -.+.++ -.++|+.|++++| +|++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455566666655544334455555555555555543211 000000 2355666666655 3444444555556666666


Q ss_pred             ECcCCc
Q 045705          319 NLSLNK  324 (365)
Q Consensus       319 ~L~~N~  324 (365)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            655433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.64  E-value=0.093  Score=50.68  Aligned_cols=132  Identities=23%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             CCCCCcEEEcccCcCCCc--chhhhcCCCCCCEEEcccC-cCCCCCc----ccCCCCCCCCEEECCCCc-CCCCCCccCc
Q 045705          215 NLTNLATLYLDSNALSGS--ILNEIGNLKSLYYLELTSN-TLSGSIP----LPLGNLTNLVVLELSDNK-LSGLIPPSFG  286 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  286 (365)
                      .++.|+.|.+..+.-...  .-.....++.|+.|+++++ ......+    .....+++|+.|+++.+. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            367888888887743222  2344567788888888863 2111111    123345778888888777 4433222222


Q ss_pred             -CCCccceEEeeccc-cCCcch-hhcCCCCCCCeEECcCCcCCC-C-chhHhhhccCCCcEEEccC
Q 045705          287 -NLTNLTTLYVYKNS-IFGSIL-DEIGNLKSLSNINLSLNKLNG-S-IPLSLTNLTNSLEVVCLSS  347 (365)
Q Consensus       287 -~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~N~l~~-~-~p~~l~~~~~~L~~L~l~~  347 (365)
                       .+++|+.|.+.++. +++..- .....++.|++|+++++.... . +......++ .|+.|.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhhhhh
Confidence             26778888877766 454332 333557778888888776542 1 223333333 455554433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.50  E-value=0.0028  Score=53.76  Aligned_cols=88  Identities=22%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705          236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL  315 (365)
Q Consensus       236 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  315 (365)
                      .+......+.||++.|++- .....|.-++.+..|+++.|.+. ..|..++.+..+..+++..|.. ...|.++...+++
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCc
Confidence            3444556666777777665 33444555566677777777666 4566666666667777666665 3446667777777


Q ss_pred             CeEECcCCcCC
Q 045705          316 SNINLSLNKLN  326 (365)
Q Consensus       316 ~~L~L~~N~l~  326 (365)
                      +.+++.+|.++
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            77777777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.87  E-value=0.33  Score=25.91  Aligned_cols=13  Identities=54%  Similarity=0.603  Sum_probs=6.1

Q ss_pred             CCcEEEcccCcCC
Q 045705          218 NLATLYLDSNALS  230 (365)
Q Consensus       218 ~L~~L~Ls~n~l~  230 (365)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.87  E-value=0.33  Score=25.91  Aligned_cols=13  Identities=54%  Similarity=0.603  Sum_probs=6.1

Q ss_pred             CCcEEEcccCcCC
Q 045705          218 NLATLYLDSNALS  230 (365)
Q Consensus       218 ~L~~L~Ls~n~l~  230 (365)
                      +|++|+|++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.65  E-value=0.12  Score=49.84  Aligned_cols=174  Identities=20%  Similarity=0.083  Sum_probs=101.4

Q ss_pred             hCCCCCcEEEeeCCcCCCc--cCcCCCCCCCCcEEEcccC-cCCCcch----hhhcCCCCCCEEEcccCc-CCCCCcccC
Q 045705          190 RSLKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYLDSN-ALSGSIL----NEIGNLKSLYYLELTSNT-LSGSIPLPL  261 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~  261 (365)
                      ..++.|+.|.+..+.-...  .-.....+++|++|+++++ ......+    .....+.+|+.|+++.+. ++...-..+
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            3468899999988743323  2344567899999999974 2211112    234456889999999988 553332333


Q ss_pred             C-CCCCCCEEECCCCc-CCCCC-CccCcCCCccceEEeeccccC-Cc-chhhcCCCCCCCeEECcCCc----CCC-----
Q 045705          262 G-NLTNLVVLELSDNK-LSGLI-PPSFGNLTNLTTLYVYKNSIF-GS-ILDEIGNLKSLSNINLSLNK----LNG-----  327 (365)
Q Consensus       262 ~-~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~L~~N~----l~~-----  327 (365)
                      . .+++|++|.+.++. ++... ......++.|++|+++++... +. .......+++|+.|.+....    ++.     
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~  344 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG  344 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence            3 37899999988777 45332 223346788999999988653 21 22333446666555543332    211     


Q ss_pred             -------Cchh-HhhhccCCCcEEEccCccccccC-ChhhhcCCCC
Q 045705          328 -------SIPL-SLTNLTNSLEVVCLSSNHIVGEI-PLELRKHSSL  364 (365)
Q Consensus       328 -------~~p~-~l~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L  364 (365)
                             .... .+..++ .++.+.+..+..+... -..+..|+.|
T Consensus       345 ~~~~~~d~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  345 LLTLTSDDLAELILRSCP-KLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hhccCchhHhHHHHhcCC-CcchhhhhhhhccCcchHHHhcCCccc
Confidence                   1111 122333 6778888877744222 2455555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.05  E-value=0.14  Score=26.84  Aligned_cols=20  Identities=40%  Similarity=0.411  Sum_probs=9.8

Q ss_pred             CCcEEEccCccccccCChhh
Q 045705          339 SLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       339 ~L~~L~l~~n~l~~~~p~~l  358 (365)
                      +|++|++++|+|++.....+
T Consensus         3 ~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    3 NLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             T-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCEEEccCCcCCHHHHHHh
Confidence            45666666666655444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.52  E-value=0.19  Score=42.08  Aligned_cols=85  Identities=18%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcC-CCCCCCeEECcCCc-CCCCchhHhhhccCCC
Q 045705          264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIG-NLKSLSNINLSLNK-LNGSIPLSLTNLTNSL  340 (365)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~N~-l~~~~p~~l~~~~~~L  340 (365)
                      -..++.+|.++..|..+.-+.+.+++.++.|.+.+|.--+. -.+-++ -.++|+.|+|++|. ||..--..+..++ +|
T Consensus       100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk-nL  178 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK-NL  178 (221)
T ss_pred             cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh-hh
Confidence            34588999999999877777888889999999988864332 122232 35799999999885 7876677888887 79


Q ss_pred             cEEEccCcc
Q 045705          341 EVVCLSSNH  349 (365)
Q Consensus       341 ~~L~l~~n~  349 (365)
                      +.|.+.+=+
T Consensus       179 r~L~l~~l~  187 (221)
T KOG3864|consen  179 RRLHLYDLP  187 (221)
T ss_pred             HHHHhcCch
Confidence            988887643

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.33  E-value=0.46  Score=25.52  Aligned_cols=17  Identities=29%  Similarity=0.511  Sum_probs=13.3

Q ss_pred             CCcEEEccCccccccCCh
Q 045705          339 SLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       339 ~L~~L~l~~n~l~~~~p~  356 (365)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            5788888888888 6775

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=83.12  E-value=0.72  Score=42.93  Aligned_cols=133  Identities=18%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             CCCCcEEEcccCcC-CCcchhhh-cCCCCCCEEEcccCcCCCCC-ccc-CCCCCCCCEEECCCCcCCCC--CCccCcCCC
Q 045705          216 LTNLATLYLDSNAL-SGSILNEI-GNLKSLYYLELTSNTLSGSI-PLP-LGNLTNLVVLELSDNKLSGL--IPPSFGNLT  289 (365)
Q Consensus       216 l~~L~~L~Ls~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~  289 (365)
                      +.+|+.|+.+++.- +...-.++ .+..+|++|.+..++--+.. -.. -.+++.|+.+++.++.....  +...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            45666666665432 22222222 23456666666665521110 001 12344566666655544311  111112455


Q ss_pred             ccceEEeeccccC-Ccc----hhhcCCCCCCCeEECcCCcCCC-CchhHhhhccCCCcEEEccCcc
Q 045705          290 NLTTLYVYKNSIF-GSI----LDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       290 ~L~~L~L~~n~l~-~~~----~~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      .|+.|.++++... +..    ...-..+..|..+.|++++.+. ..-..+...+ +|+.+++-+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechh
Confidence            5666666655431 110    1111234455556666655431 2223333343 45555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-15
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		4e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDI--NAISGSILDEI--RSLKSLFNLRLGDN 203
             VLD     +S  + E+       LL LD+  N  SG IL  +      +L  L L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN 263
             +G IP +L N + L +L+L  N LSG+I + +G+L  L  L+L  N L G IP  L  
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXX 323
           +  L  L L  N L+G IP    N TNL  + +  N + G                    
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------------------- 502
Query: 324 XXXXXIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
                IP  +  L N L ++ LS+N   G IP EL    SL+
Sbjct: 503 -----IPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLI 538

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 98/222 (44%), Gaps = 29/222 (13%)
Query: 148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDI--NAISGSILDEI--RSLKSLFNLRLGDN 203
             VLD     +S  + E+       LL LD+  N  SG IL  +      +L  L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 204 TLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN 263
             +G IP +L N + L +L+L  N LSG+I + +G+L  L  L+L  N L G IP  L  
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEXXXXXXXXXXXXXXX 323
           +  L  L L  N L+G IP    N TNL  + +  N + G                    
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE------------------- 505
Query: 324 XXXXXIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
                IP  +  L N L ++ LS+N   G IP EL    SL+
Sbjct: 506 -----IPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLI 541

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 165 AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224
           A++ +  +L    IN + G I   I  L  L  L +    +SG+IP  L  +  L TL  
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV-LELSDNKLSGLIPP 283
             NALSG++   I +L +L  +    N +SG+IP   G+ + L   + +S N+L+G IPP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 284 SFGNLTNLTTLYVYKNSIFG 303
           +F NL NL  + + +N + G
Sbjct: 193 TFANL-NLAFVDLSRNMLEG 211

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 36/179 (20%)
Query: 153 FPHTAYSDSMEEA----HVTWPTWLLYLD-INAISG-----SILDEIRSLKSLFNLRLGD 202
           FP  A +++++ A    +VT       LD I  +S      + ++ I+ L +L  L L D
Sbjct: 19  FPDPALANAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKD 78
Query: 203 NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL--- 259
           N ++   PL   NLT +  L L  N L    ++ I  L+S+  L+LTS  ++   PL   
Sbjct: 79  NQITDLTPLK--NLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGL 134
Query: 260 -----------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
                            PL  LTNL  L + +N+++ L P    NL+ LTTL    N I
Sbjct: 135 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKI 191

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 180 AISGSILDEIRSLKSLFNLR---LGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNE 236
           A+ G+ L +I +LK L NL    L  N L          LTNL  L L  N L       
Sbjct: 69  ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 237 IGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
              L +L YL L  N L     LP G    LTNL  L+LS N+L  L    F  LT L  
Sbjct: 129 FDKLTNLTYLNLAHNQLQS---LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 294 LYVYKNSI 301
           L +Y+N +
Sbjct: 186 LRLYQNQL 193

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 21/153 (13%)
Query: 160 DSMEEAHVTWPT------WLLYLDINAISG---SILDEIRSLKSLFNLRLGDNTLSGSIP 210
           D   + H + P        +LYL  N I+     + D + +LK L+   LG N L G++P
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELY---LGSNQL-GALP 80
Query: 211 LSL-GNLTNLATLYLDSNALS---GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
           + +  +LT L  L L +N L+    ++ + + +LK L+   +  N L+  +P  +  LT+
Sbjct: 81  VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF---MCCNKLT-ELPRGIERLTH 136
Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           L  L L  N+L  +   +F  L++LT  Y++ N
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSG 231
           LLYL+ N +        + LK+L  L + DN L  ++P+ +   L NLA L LD N L  
Sbjct: 65  LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNL 288
                  +L  L YL L  N L     LP G    LT+L  L L +N+L  +   +F  L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 289 TNLTTLYVYKNSI 301
           T L TL +  N +
Sbjct: 181 TELKTLKLDNNQL 193

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 167 VTWPTWL--LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLY 223
           +T  TWL   Y  +  +S  + D++  L +L    L +N L+ S+PL +  +LT L  LY
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---GLANNQLA-SLPLGVFDHLTQLDKLY 113
Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIP 282
           L  N L          L  L  L L +N L  SIP      LTNL  L LS N+L  +  
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 283 PSFGNLTNLTTLYVYKNSI 301
            +F  L  L T+ ++ N  
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 167 VTWPTWL--LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLY 223
           +T  TWL   Y  +  +S  + D++  L +L    L +N L+ S+PL +  +LT L  LY
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTL---GLANNQLA-SLPLGVFDHLTQLDKLY 113
Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIP 282
           L  N L          L  L  L L +N L  SIP      LTNL  L LS N+L  +  
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 283 PSFGNLTNLTTLYVYKNSI 301
            +F  L  L T+ ++ N  
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 228 ALSGSILNEIGNLK---SLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLI 281
           AL G+ L++I  LK   +L YL LT N L     LP G    LTNL  L L +N+L  L 
Sbjct: 69  ALGGNKLHDISALKELTNLTYLILTGNQLQS---LPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 282 PPSFGNLTNLTTLYVYKNSI 301
              F  LTNLT LY+Y N +
Sbjct: 126 DGVFDKLTNLTYLYLYHNQL 145

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
           +++L  L ++ + +N ++   PL+  NLTNL  L L +N ++   ++ + NL +L  LEL
Sbjct: 81  LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITD--IDPLKNLTNLNRLEL 136
Query: 249 TSNTLSGSIPL-------------------PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
           +SNT+S    L                   PL NLT L  L++S NK+S +       LT
Sbjct: 137 SSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLT 194
Query: 290 NLTTLYVYKNSI 301
           NL +L    N I
Sbjct: 195 NLESLIATNNQI 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  196 bits (500), Expect = 2e-60
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 7/196 (3%)

Query: 173 LLYLDI---NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229
           L +L I   N + G I   I  L  L  L +    +SG+IP  L  +  L TL    NAL
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV-VLELSDNKLSGLIPPSFGNL 288
           SG++   I +L +L  +    N +SG+IP   G+ + L   + +S N+L+G IPP+F NL
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            NL  + + +N + G      G+ K+   I+L+ N L   +   +    N L  + L +N
Sbjct: 198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN-LNGLDLRNN 254

Query: 349 HIVGEIPLELRKHSSL 364
            I G +P  L +   L
Sbjct: 255 RIYGTLPQGLTQLKFL 270

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (484), Expect = 5e-58
 Identities = 55/186 (29%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 174 LYLDINAISGS--ILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLATLYLDSNALS 230
           L L    +     I   + +L  L  L +G  N L G IP ++  LT L  LY+    +S
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
           G+I + +  +K+L  L+ + N LSG++P  + +L NLV +    N++SG IP S+G+ + 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 291 LTT-LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
           L T + + +N + G I     NL +L+ ++LS N L G   +   +  N  + + L+ N 
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNS 232

Query: 350 IVGEIP 355
           +  ++ 
Sbjct: 233 LAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 4e-56
 Identities = 65/190 (34%), Positives = 88/190 (46%), Gaps = 6/190 (3%)

Query: 179 NAISGSILDEIRSLKSLFNLRLGDNTLSGS--IPLSLGNLTNLATLYL-DSNALSGSILN 235
               G + D       + NL L    L     IP SL NL  L  LY+   N L G I  
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY 295
            I  L  L+YL +T   +SG+IP  L  +  LV L+ S N LSG +PPS  +L NL  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 296 VYKNSIFGSILDEIGNLKSLSN-INLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI 354
              N I G+I D  G+   L   + +S N+L G IP +  NL  +L  V LS N + G+ 
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDA 213

Query: 355 PLELRKHSSL 364
            +      + 
Sbjct: 214 SVLFGSDKNT 223

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (442), Expect = 7e-52
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 5/184 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT-LYLDSNALSGS 232
           L    NA+SG++   I SL +L  +    N +SG+IP S G+ + L T + +  N L+G 
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           I     NL +L +++L+ N L G   +  G+  N   + L+ N L+  +    G   NL 
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            L +  N I+G++   +  LK L ++N+S N L G IP    NL    +V   ++N  + 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQR-FDVSAYANNKCLC 305

Query: 353 EIPL 356
             PL
Sbjct: 306 GSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  166 bits (422), Expect = 6e-49
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 202 DNTLSGSIPLSLGNLTNLATLYLDSNALSGS--ILNEIGNLKSLYYLELTS-NTLSGSIP 258
           + T  G +  +      +  L L    L     I + + NL  L +L +   N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI 318
             +  LT L  L ++   +SG IP     +  L TL    N++ G++   I +L +L  I
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 319 NLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358
               N+++G+IP S  + +     + +S N + G+IP   
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (388), Expect = 7e-44
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFN-LRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +  D N ISG+I D   S   LF  + +  N L+G IP +  NL NLA + L  N L G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD 212

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
                G+ K+   + L  N+L+  +   +G   NL  L+L +N++ G +P     L  L 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS 332
           +L V  N++ G I  + GNL+       + NK     PL 
Sbjct: 272 SLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (357), Expect = 2e-39
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 208 SIPLSLGNLTNLA----TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP--L 261
            I   LGN T L+    T    +    G + +       +  L+L+   L    P+P  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 262 GNLTNLVVLELSD-NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINL 320
            NL  L  L +   N L G IPP+   LT L  LY+   ++ G+I D +  +K+L  ++ 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 321 SLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
           S N L+G++P S+++L N L  +    N I G IP      S L 
Sbjct: 133 SYNALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLF 176

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  190 bits (485), Expect = 1e-54
 Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 3/193 (1%)

Query: 174 LYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L L  N  SG IL  +      +L  L L +N  +G IP +L N + L +L+L  N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
           +I + +G+L  L  L+L  N L G IP  L  +  L  L L  N L+G IP    N TNL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351
             + +  N + G I   IG L++L+ + LS N  +G+IP  L +  + L  + L++N   
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFN 551

Query: 352 GEIPLELRKHSSL 364
           G IP  + K S  
Sbjct: 552 GTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  190 bits (485), Expect = 2e-54
 Identities = 70/191 (36%), Positives = 104/191 (54%), Gaps = 5/191 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LYL  N  +G I   + +   L +L L  N LSG+IP SLG+L+ L  L L  N L G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
             E+  +K+L  L L  N L+G IP  L N TNL  + LS+N+L+G IP   G L NL  
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +  NS  G+I  E+G+ +SL  ++L+ N  NG+IP ++   +       +++N I G+
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK-----IAANFIAGK 573

Query: 354 IPLELRKHSSL 364
             + ++     
Sbjct: 574 RYVYIKNDGMK 584

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (478), Expect = 1e-53
 Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 5/187 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +  N  S  I   +    +L +L +  N LSG    ++   T L  L + SN   G I
Sbjct: 205 LDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
                 LKSL YL L  N  +G IP  L G    L  L+LS N   G +PP FG+ + L 
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 293 TLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351
           +L +  N+  G + +D +  ++ L  ++LS N+ +G +P SLTNL+ SL  + LSSN+  
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381

Query: 352 GEIPLEL 358
           G I   L
Sbjct: 382 GPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  178 bits (454), Expect = 2e-50
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 11/196 (5%)

Query: 174 LYLDINAISGSILDEIR---SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           L L  N+ISG+ +           L +L +  N +SG + +      NL  L + SN  S
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFS 213

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
             I   +G+  +L +L+++ N LSG     +   T L +L +S N+  G IPP    L +
Sbjct: 214 TGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270

Query: 291 LTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
           L  L + +N   G I D + G   +L+ ++LS N   G++P    + +  LE + LSSN+
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSNN 329

Query: 350 IVGEIPLE-LRKHSSL 364
             GE+P++ L K   L
Sbjct: 330 FSGELPMDTLLKMRGL 345

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  169 bits (430), Expect = 5e-47
 Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
             L L +N + G I  E+  +K+L  L L  N L+G IP  L N TNL  + L +N L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
            I   IG L++L  L+L++N+ SG+IP  LG+  +L+ L+L+ N  +G IP +    +  
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLN--KLNGSIPLSLTNLTNSLEVVCLSSNH 349
                  N I G     I N       + + N  +  G     L  L+ +     ++S  
Sbjct: 565 IAA----NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRV 619

Query: 350 IVGEIPLELRKHSSLV 365
             G        + S++
Sbjct: 620 YGGHTSPTFDNNGSMM 635

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (429), Expect = 7e-47
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 11/199 (5%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L    +N    ++   + SL  L +L L ++ ++GS+        +L +L L  N+LSG 
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 233 I--LNEIGNLKSLYYLELTSNTLSGSIPLPLG-NLTNLVVLELSDNKLSGLIPPSF---G 286
           +  L  +G+   L +L ++SNTL     +  G  L +L VL+LS N +SG     +    
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 287 NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLS 346
               L  L +  N I G +  ++    +L  +++S N  +  IP  L + +  L+ + +S
Sbjct: 176 GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSA-LQHLDIS 231

Query: 347 SNHIVGEIPLELRKHSSLV 365
            N + G+    +   + L 
Sbjct: 232 GNKLSGDFSRAISTCTELK 250

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (423), Expect = 5e-46
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N+ SG+I  E+   +SL  L L  N  +G+IP ++   +      + +N ++G  
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKR 574

Query: 234 LNEIGNLKSLYYLELTSNT--LSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
              I N           N     G     L  L+      ++     G   P+F N  ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351
             L +  N + G I  EIG++  L  +NL  N ++GSIP  + +L   L ++ LSSN + 
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLD 693

Query: 352 GEIPLELRKHSSLV 365
           G IP  +   + L 
Sbjct: 694 GRIPQAMSALTMLT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  145 bits (367), Expect = 2e-38
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 8/178 (4%)

Query: 170 PTWL----LYLDINAISGSILDEIRSLKSLFNLRLGDNT--LSGSIPLSLGNLTNLATLY 223
           P  +      +  N I+G     I++           N     G     L  L+      
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPP 283
           + S    G       N  S+ +L+++ N LSG IP  +G++  L +L L  N +SG IP 
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674

Query: 284 SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS--LTNLTNS 339
             G+L  L  L +  N + G I   +  L  L+ I+LS N L+G IP          +
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (358), Expect = 3e-37
 Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 14/177 (7%)

Query: 198 LRLGDNTLS---GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLS 254
           + L    L+    ++  SL +LT L +L+L ++ ++GS+ +      SL  L+L+ N+LS
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLS 113

Query: 255 GSIPLP--LGNLTNLVVLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSILDEI-- 309
           G +     LG+ + L  L +S N L           L +L  L +  NSI G+ +     
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 310 -GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
                 L ++ +S NK++G + +S     N LE + +SSN+    IP  L   S+L 
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVS--RCVN-LEFLDVSSNNFSTGIP-FLGDCSALQ 226

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  116 bits (293), Expect = 1e-28
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 212 SLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE 271
               +T++       N    ++ + + +L  L  L L+++ ++GS+        +L  L+
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 272 LSDNKLSGLIPP--SFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGS 328
           LS N LSG +    S G+ + L  L V  N++     +     L SL  ++LS N ++G+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 329 IPLSLTNLTN--SLEVVCLSSNHIVGEIPL 356
             +          L+ + +S N I G++ +
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVDV 196

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345
             +T++       N  F ++   + +L  L ++ LS + +NGS+        + L  + L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSAS-LTSLDL 107

Query: 346 SSNHIVGEIP--LELRKHSSLV 365
           S N + G +     L   S L 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLK 129

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (369), Expect = 7e-39
 Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 3/196 (1%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
             +L L  N +             L +L +G NT+S   P     L  L  L L  N LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
                      +L  L L SN++      P     NL+ L+LS N LS     +   L N
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 291 LTTLYVYKNSIFGSILDEIGNLK--SLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
           L  L +  N I     +E+      SL  + LS N++    P     +   L  + L++ 
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LFGLFLNNV 205

Query: 349 HIVGEIPLELRKHSSL 364
            +   +  +L    + 
Sbjct: 206 QLGPSLTEKLCLELAN 221

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (351), Expect = 2e-36
 Identities = 45/174 (25%), Positives = 63/174 (36%), Gaps = 1/174 (0%)

Query: 192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251
             ++  L L  N L      +    + L +L +  N +S         L  L  L L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311
            LS          TNL  L L  N +  +    F    NL TL +  N +  + L     
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 312 LKSLSNINLSLNKLNGSIPLSLTNLTN-SLEVVCLSSNHIVGEIPLELRKHSSL 364
           L++L  + LS NK+       L    N SL+ + LSSN I    P        L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 4e-34
 Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 12/198 (6%)

Query: 174 LYLDINAISGSI-LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG- 231
           L L +N I   +   E R L+++F + L  N        S   + +L  L L   AL   
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 232 -SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS--------GLIP 282
            S  +    L++L  L+L++N ++      L  L  L +L+L  N L+        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 283 PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
                L++L  L +  N      ++   +L  L  I+L LN LN        N  + L+ 
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS-LKS 588

Query: 343 VCLSSNHIVGEIPLELRK 360
           + L  N I          
Sbjct: 589 LNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  130 bits (328), Expect = 2e-33
 Identities = 49/202 (24%), Positives = 73/202 (36%), Gaps = 12/202 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYLDSNALSGS 232
           L L  N IS    D    L  L  L LG N +   +       L N+  +YL  N     
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

Query: 233 ILNEIGNLKSLYYLELTSNTLSG--SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
             N    + SL  L L    L    S P P   L NL +L+LS+N ++ +       L  
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 291 LTTLYVYKNSI--------FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
           L  L +  N++         G  +  +  L  L  +NL  N  +        +L   L++
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE-LKI 564

Query: 343 VCLSSNHIVGEIPLELRKHSSL 364
           + L  N++            SL
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (323), Expect = 8e-33
 Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 10/192 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG--SIPLSLGNLTNLATLYLDSNALSG 231
           +YL  N       +    + SL  L L    L    S P     L NL  L L +N ++ 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 232 SILNEIGNLKSLYYLELTSNTLS--------GSIPLPLGNLTNLVVLELSDNKLSGLIPP 283
              + +  L+ L  L+L  N L+        G     L  L++L +L L  N    +   
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 284 SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV 343
            F +L  L  + +  N++         N  SL ++NL  N +             +L  +
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 344 CLSSNHIVGEIP 355
            +  N       
Sbjct: 615 DMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 3e-32
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 17/207 (8%)

Query: 174 LYLDINAISGSILDEIRSLK--SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L L  N I     +E+      SL  L L  N +    P     +  L  L+L++  L  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 232 SILNEIG---NLKSLYYLELTSNTLSGSIPLPLGNL--TNLVVLELSDNKLSGLIPPSFG 286
           S+  ++       S+  L L+++ LS +       L  TNL +L+LS N L+ +   SF 
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 287 NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINL---------SLNKLNGSIPLSLTNLT 337
            L  L   ++  N+I       +  L ++  +NL         SL  L      S   L 
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 338 NSLEVVCLSSNHIVGEIPLELRKHSSL 364
             LE + +  N I G          +L
Sbjct: 330 C-LEHLNMEDNDIPGIKSNMFTGLINL 355

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 2e-30
 Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 16/207 (7%)

Query: 174 LYLDINAISGSILDEI----RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229
           L L  +  S   L        +   L  L L  N +S     +   L +L  L L  N +
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

Query: 230 SGSI-LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL--IPPSFG 286
              +   E   L++++ + L+ N            + +L  L L    L  +   P  F 
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 287 NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN--------GSIPLSLTNLTN 338
            L NLT L +  N+I     D +  L+ L  ++L  N L         G     L  L++
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 339 SLEVVCLSSNHIVGEIPLELRKHSSLV 365
            L ++ L SN          +    L 
Sbjct: 538 -LHILNLESNGFDEIPVEVFKDLFELK 563

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 2e-30
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 16/206 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGS--IPLSLGNLTN--LATLYLDSNAL 229
           L ++ N I G   +    L +L  L L ++  S       +  +L +  L  L L  N +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
           S    +    L  L  L+L  N +   +       L N+  + LS NK   L   SF  +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 289 TNLTTLYVYKNSI--FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLS 346
            +L  L + + ++    S       L++L+ ++LS N +       L  L   LE++ L 
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQ 512

Query: 347 SNHI--------VGEIPLELRKHSSL 364
            N++         G     L+  S L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (290), Expect = 2e-28
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 16/197 (8%)

Query: 174 LYLDINAISGSILDEIRSLK--SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L L  + +S +       LK  +L  L L  N L+     S   L  L   +L+ N +  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 232 SILNEIGNLKSLYYLELTSN---------TLSGSIPLPLGNLTNLVVLELSDNKLSGLIP 282
              + +  L ++ YL L  +         +L          L  L  L + DN + G+  
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 283 PSFGNLTNLTTLYVYKNSIFGSILDEIG----NLKSLSNINLSLNKLNGSIPLSLTNLTN 338
             F  L NL  L +  +      L            L  +NL+ NK++     + + L +
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 339 SLEVVCLSSNHIVGEIP 355
            LEV+ L  N I  E+ 
Sbjct: 407 -LEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.2 bits (240), Expect = 6e-22
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLS--------GSIPLSLGNLTNLATLYLD 225
           L L  N I+    D +  L+ L  L L  N L+        G     L  L++L  L L+
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF 285
           SN      +    +L  L  ++L  N L+        N  +L  L L  N ++ +    F
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 286 G-NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI 329
           G    NLT L +  N    +       +  ++  + ++ +L+   
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 22/121 (18%)

Query: 265 TNLVVLELSD---------------------NKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
            +  V + S                      N+L  L   +F   + LT+L V  N+I  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS 363
              +    L  L  +NL  N+L+     +    TN L  + L SN I         K  +
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKN 122

Query: 364 L 364
           L
Sbjct: 123 L 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGS 232
           + L +N ++        +  SL +L L  N ++       G    NL  L +  N    +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 233 I-----LNEIGNLKSLYYLELTSNTLSGSIP 258
                      N       EL+S+ L  + P
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (355), Expect = 3e-37
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N +         S   L  L L    +      +  +L++L+TL L  N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLT 292
           L     L SL  L      L+     P+G+L  L  L ++ N +    +P  F NLTNL 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSN----INLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            L +  N I      ++  L  +      ++LSLN +N   P +   +   L  + L +N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNN 210

Query: 349 HIVGEIP 355
                + 
Sbjct: 211 FDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (347), Expect = 4e-36
 Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 3/186 (1%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYLDSNALSGS 232
           L L  N +   +      L+ L +L    + L      S   +L NL  L +       +
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSI-PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
                  L SL  L++  N+   +  P     L NL  L+LS  +L  L P +F +L++L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351
             L +  N+ F         L SL  ++ SLN +  S    L +  +SL  + L+ N   
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 352 GEIPLE 357
                +
Sbjct: 557 CTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  132 bits (333), Expect = 3e-34
 Identities = 41/170 (24%), Positives = 60/170 (35%), Gaps = 4/170 (2%)

Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
           S  NL L  N L      S  +   L  L L    +         +L  L  L LT N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI-FGSILDEIGNL 312
                     L++L  L   +  L+ L     G+L  L  L V  N I    + +   NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 313 KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC---LSSNHIVGEIPLELR 359
            +L +++LS NK+       L  L     +     LS N +    P   +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 2e-29
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
            IP +L    +   L L  N L         +   L  L+L+   +         +L++L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327
             L L+ N +  L   +F  L++L  L   + ++       IG+LK+L  +N++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 328 -SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
             +P   +NLTN LE + LSSN I      +LR    +
Sbjct: 139 FKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (258), Expect = 2e-24
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 10/189 (5%)

Query: 178 INAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI 237
           ++     I+D    L ++ +  L   T+      S         L L +         ++
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKL 324

Query: 238 GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS--GLIPPSFGNLTNLTTLY 295
            +LK L +         G       +L +L  L+LS N LS  G    S    T+L  L 
Sbjct: 325 KSLKRLTFTSN-----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355
           +  N +   +      L+ L +++   + L      S+     +L  + +S  H      
Sbjct: 380 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 356 LELRKHSSL 364
                 SSL
Sbjct: 439 GIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 21/211 (9%)

Query: 166 HVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYL 224
            +      L L +N ++       + +  L  L L +N  S ++    +  L  L    L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 225 DSNALSGS------ILNEIGNLKSLYYLELTSNTLSGS---IPLPLGNLTNLVVLELSDN 275
                           + +  L +L   E     L      I      LTN+    L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
            +  +    F        L +           +   LK  S   L+     G    S  +
Sbjct: 293 TIERVKD--FSYNFGWQHLELVNCK-----FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 336 LTNSLEVVCLSSNHI--VGEIPLELRKHSSL 364
           L + LE + LS N +   G         +SL
Sbjct: 346 LPS-LEFLDLSRNGLSFKGCCSQSDFGTTSL 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 6e-37
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
             ++ +    SI    R       +    N ++  +  ++  LT L   Y+ ++      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           + E    ++  Y          +  L   NL +L  +E+ +      +P     L  +  
Sbjct: 223 ICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277

Query: 294 LYVYKNSI--------FGSILDEIGNLKSLSNINLSLNKL-NGSIPLSLTNLTNSLEVVC 344
           + V  N              L +    + +  I +  N L    +  SL  +   L ++ 
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK-LGMLE 336

Query: 345 LSSNHIVGEIP 355
              N + G++P
Sbjct: 337 CLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (353), Expect = 8e-37
 Identities = 33/210 (15%), Positives = 73/210 (34%), Gaps = 19/210 (9%)

Query: 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL-- 229
                +      +   +  +LK L ++ + +      +P  L  L  +  + +  N    
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 230 ------SGSILNEIGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGLIP 282
                     L +    + +  + +  N L +  +   L  +  L +LE   N+L G   
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KL 346

Query: 283 PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLE 341
           P+FG+   L +L +  N I     +  G  + + N++ + NKL          +++  + 
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV-MS 405

Query: 342 VVCLSSNHIVG-------EIPLELRKHSSL 364
            +  S N I          +     K  ++
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (338), Expect = 8e-35
 Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 19/208 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-S 232
           L    N + G +     S   L +L L  N ++       G    +  L    N L    
Sbjct: 335 LECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393

Query: 233 ILNEIGNLKSLYYLELTSNTLSG-------SIPLPLGNLTNLVVLELSDNKLSGLIPPSF 285
            + +  ++  +  ++ + N +          +        N+  + LS+N++S      F
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 286 GNLTNLTTLYVYKNSI-------FGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLT 337
              + L+++ +  N +            +   N   L++I+L  NKL         T L 
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 338 NSLEVVCLSSNHIVGEIPLELRKHSSLV 365
             L  + LS N    + P +    S+L 
Sbjct: 514 Y-LVGIDLSYNSF-SKFPTQPLNSSTLK 539

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (308), Expect = 7e-31
 Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 26/212 (12%)

Query: 174 LYLDINAISG-------SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS 226
           +    N I          +        ++ ++ L +N +S          + L+++ L  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 227 NALSG-------SILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLS 278
           N L+               N   L  ++L  N L+          L  LV ++LS N  S
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 279 GLIPPSFGNLTNLTTLY------VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS 332
              P    N + L             N       + I    SL+ + +  N +   +   
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK 584

Query: 333 LTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
              +T ++ V+ +  N  +      +  +   
Sbjct: 585 ---ITPNISVLDIKDNPNISIDLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (303), Expect = 4e-30
 Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 28/252 (11%)

Query: 137 FIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLF 196
           +I+  +    ++  L+  + +      +    W          A  G  L+    +  L 
Sbjct: 28  YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGL- 86

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG----SILNEIGNLKSLYYLELTSNT 252
              L     SG +P ++G LT L  L L S+             I    S    +     
Sbjct: 87  --SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 253 LSGSIP--LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIG 310
              +     P  + ++L+   ++ +     I  S       T +    N+I   +   + 
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVM 203

Query: 311 NLKSLSNINLSLNKLNGSIPLSLTNLTN------------------SLEVVCLSSNHIVG 352
            L  L    +  +              N                   L  V + +   + 
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 353 EIPLELRKHSSL 364
           ++P  L+    +
Sbjct: 264 KLPTFLKALPEM 275

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (286), Expect = 7e-28
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 19/191 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG-------SIPLSLGNLTNLATLYLDS 226
           + L  N IS    +   +   L ++ L  N L+            +  N   L ++ L  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 227 NALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL------SDNKLSG 279
           N L+    +     L  L  ++L+ N+ S   P    N + L    +        N+   
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 280 LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNS 339
             P       +LT L +  N I   + ++I    ++S +++  N         +     +
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 340 LEVVCLSSNHI 350
              + L  +  
Sbjct: 614 GMYM-LFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 19/110 (17%), Positives = 29/110 (26%), Gaps = 5/110 (4%)

Query: 261 LGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG----SILDEIGNLKSLS 316
           L +   +  L L     SG +P + G LT L  L +  +             I    S  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 317 NINLSLNKLNGSIPLSLTNLTNS-LEVVCLSSNHIVGEIPLELRKHSSLV 365
                      +          S L   C++S+     I    R      
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 10/111 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSL------FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
           + L  N+ S     +  +  +L             N      P  +    +L  L + SN
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

Query: 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
            +   +  +I    ++  L++  N         +       +  L  +K  
Sbjct: 577 DIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 4e-33
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +  + +    +  I +L  L++L L  N +    PL   +LT+L       N ++   
Sbjct: 160 LTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITD-- 213

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  + N+  L  L++ +N ++   PL   NL+ L  LE+  N++S +   +  +LT L  
Sbjct: 214 ITPVANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISDI--NAVKDLTKLKM 269

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L V  N I  S +  + NL  L+++ L+ N+L       +  LTN L  + LS NHI   
Sbjct: 270 LNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHITDI 326

Query: 354 IPLE 357
            PL 
Sbjct: 327 RPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 2e-31
 Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 14/177 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LY+  N I+   +  +++L +L  L L ++ +S   P  L NLT + +L L +N    S 
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SD 147

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           L+ + N+  L YL +T + +      P+ NLT+L  L L+ N++  + P    +LT+L  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
              Y N I  + +  + N+  L+++ +  NK+    PL+  NL+  L  + + +N I
Sbjct: 204 FTAYVNQI--TDITPVANMTRLNSLKIGNNKITDLSPLA--NLSQ-LTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (301), Expect = 5e-31
 Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 13/177 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+ N I    +  + SL SL       N ++   P+   N+T L +L + +N ++   
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITD-- 235

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           L+ + NL  L +LE+ +N +S  I   + +LT L +L +  N++S +      NL+ L +
Sbjct: 236 LSPLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L++  N +    ++ IG L +L+ + LS N +    PL+  +L+  ++    ++  I
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSK-MDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (297), Expect = 2e-30
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +    ++   +  I  L +L  L L  N ++   PLS  NL  L  LY+ +N +  + 
Sbjct: 49  LVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKI--TD 102

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + NL +L  L L  + +S     PL NLT +  L L  N     + P   N+T L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L V ++ +    +  I NL  L +++L+ N++    PL+  +LT+ L       N I   
Sbjct: 160 LTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISPLA--SLTS-LHYFTAYVNQITDI 214

Query: 354 IPLE 357
            P+ 
Sbjct: 215 TPVA 218

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 2e-30
 Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 14/191 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N    S L  + ++  L  L + ++ +    P+   NLT+L +L L+ N +    
Sbjct: 137 LNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIED-- 191

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + +L SL+Y     N ++   P+   N+T L  L++ +NK++ L P    NL+ LT 
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +  N I  S ++ + +L  L  +N+  N+++    L+  NL+  L  + L++N +  E
Sbjct: 248 LEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLN--NLSQ-LNSLFLNNNQLGNE 302

Query: 354 IPLELRKHSSL 364
               +   ++L
Sbjct: 303 DMEVIGGLTNL 313

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (295), Expect = 3e-30
 Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 14/184 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+ N I+   +  + +L  L NL +G N ++     +L NLTNL  LYL+ + +S   
Sbjct: 71  LNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD-- 124

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + NL  +Y L L +N     +  PL N+T L  L ++++K+  + P    NLT+L +
Sbjct: 125 ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +  N I    +  + +L SL      +N++    P++  N+T  L  + + +N I   
Sbjct: 182 LSLNYNQI--EDISPLASLTSLHYFTAYVNQITDITPVA--NMTR-LNSLKIGNNKITDL 236

Query: 354 IPLE 357
            PL 
Sbjct: 237 SPLA 240

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (285), Expect = 8e-29
 Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 12/185 (6%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
            +   +   S + +     L+S+  L +    ++ SI   +  LTNL  L L+ N ++  
Sbjct: 24  GIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD- 80

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            ++ + NL  L  L + +N +  +    L NLTNL  L L+++ +S + P    NLT + 
Sbjct: 81  -ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMY 135

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
           +L +  N    S L  + N+  L+ + ++ +K+    P++  NLT+ L  + L+ N I  
Sbjct: 136 SLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIA--NLTD-LYSLSLNYNQIED 191

Query: 353 EIPLE 357
             PL 
Sbjct: 192 ISPLA 196

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 3e-26
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 17/185 (9%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
            L   IN I          L       L   +++  +      L ++  L +    ++  
Sbjct: 7   TLPAPINQIF-----PDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVAS- 58

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            +  I  L +L YL L  N ++     PL NL  L  L +  NK++     +  NLTNL 
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKIT--DISALQNLTNLR 113

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            LY+ +++I  S +  + NL  + ++NL  N     +   L+N+T  L  + ++ + +  
Sbjct: 114 ELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTG-LNYLTVTESKVKD 169

Query: 353 EIPLE 357
             P+ 
Sbjct: 170 VTPIA 174

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 6e-23
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS 256
            L      ++   P +  +L       L   +++  +      L+S+  L +    ++ S
Sbjct: 4   TLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA-S 58

Query: 257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS 316
           I   +  LTNL  L L+ N+++ + P    NL  LT LY+  N I  + +  + NL +L 
Sbjct: 59  IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 317 NINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355
            + L+ + ++   PL+  NLT  +  + L +NH + ++ 
Sbjct: 114 ELYLNEDNISDISPLA--NLTK-MYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +  N IS   ++ ++ L  L  L +G N +S    L+  NL+ L +L+L++N L    
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNED 303

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
           +  IG L +L  L L+ N ++   PL   +L+ +   + ++  + 
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIK 346

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (308), Expect = 4e-32
 Identities = 41/200 (20%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           + +D   +   + D ++    L  L L  N L  ++P S+ +L  L  L + +      +
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

Query: 234 LNEIGN---------LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS 284
              + +         L +L  L L    +  S+P  + NL NL  L++ ++ LS L  P+
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPA 224

Query: 285 FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC 344
             +L  L  L +   +   +     G    L  + L       ++PL +  LT  LE + 
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLD 283

Query: 345 LSSNHIVGEIPLELRKHSSL 364
           L     +  +P  + +  + 
Sbjct: 284 LRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 2e-30
 Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 15/200 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L    +     D+   L  L ++ +    L   +P ++     L TL L  N L  ++
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGN---------LTNLVVLELSDNKLSGLIPPS 284
              I +L  L  L + +      +P PL +         L NL  L L    +  L P S
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS 201

Query: 285 FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC 344
             NL NL +L +  + +  ++   I +L  L  ++L       + P         L+ + 
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP-LKRLI 259

Query: 345 LSSNHIVGEIPLELRKHSSL 364
           L     +  +PL++ + + L
Sbjct: 260 LKDCSNLLTLPLDIHRLTQL 279

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (287), Expect = 3e-29
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 13/184 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN---------LTNLATLYL 224
           L L  N +  ++   I SL  L  L +        +P  L +         L NL +L L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS 284
           +   +  S+   I NL++L  L++ ++ LS ++   + +L  L  L+L         PP 
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 285 FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC 344
           FG    L  L +   S   ++  +I  L  L  ++L        +P  +  L     ++ 
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA-NCIIL 307

Query: 345 LSSN 348
           +  +
Sbjct: 308 VPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (276), Expect = 1e-27
 Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 4/157 (2%)

Query: 182 SGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLK 241
           S     E + L +L +LRL    +  S+P S+ NL NL +L + ++ LS ++   I +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD-NKLSGLIPPSFGNLTNLTTLYVYKNS 300
            L  L+L   T   + P   G    L  L L D + L  L P     LT L  L +    
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCV 288

Query: 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT 337
               +   I  L +   I +  +              
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+   I  S+   I +L++L +L++ ++ LS ++  ++ +L  L  L L       + 
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
               G    L  L L   +   ++PL +  LT L  L+L        +P     L     
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 294 LYVYKNSI 301
           + V  +  
Sbjct: 306 ILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 3e-21
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 11/178 (6%)

Query: 183 GSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKS 242
           GS            NL    +T        L           +    +        N  +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNN 57

Query: 243 LYYLELTSNTLSGSIPLPLGNLT--NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300
                 T   L  +    L + T    V LEL    L    P     L++L  + +    
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAG 115

Query: 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358
           +   + D +     L  + L+ N L  ++P S+ +L   L  + + +   + E+P  L
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR-LRELSIRACPELTELPEPL 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 5e-31
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 4/192 (2%)

Query: 170 PTWLLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
           P     L+   N +          L +L  L L    +      +  +   L TL L +N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGN 287
            L       +   K+L +L      +S    +PL N   L  L L  N +S +  P    
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN-GSIPLSLTNLTNSLEVVCLS 346
              L  L    N+I     +++ +L+  +N++L+LN  +   I     +     + +   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFG 210

Query: 347 SNHIVGEIPLEL 358
               +  I   L
Sbjct: 211 GTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (303), Expect = 4e-30
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 8/191 (4%)

Query: 175 YLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL 234
            L +N I G++ +    L          N L      +   L NL  L L    +     
Sbjct: 21  NLGLNEIPGTLPNSTECL------EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 235 NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294
           +   +   L  L LT+N L       L     L  L      +S +      N   L +L
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN-SLEVVCLSSNHIVGE 353
           Y+  N I    L +    + L  ++   N ++      +++L   +   + L+ N I   
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AG 193

Query: 354 IPLELRKHSSL 364
           I       +  
Sbjct: 194 IEPGAFDSAVF 204

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 2e-29
 Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 8/197 (4%)

Query: 174 LYLDINAISGSIL--DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L L  + I  S     ++R+L  L +L L  N        +      L  L L    L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLI---PPSFGN 287
                   NL  L  L L+ + L  S       L  L  L L  N           S   
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS 347
           L  L  L +    +         +LK +++++LS N+L  S   +L++L      + L+S
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG--IYLNLAS 532

Query: 348 NHIVGEIPLELRKHSSL 364
           NHI   +P  L   S  
Sbjct: 533 NHISIILPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  114 bits (287), Expect = 4e-28
 Identities = 45/199 (22%), Positives = 67/199 (33%), Gaps = 8/199 (4%)

Query: 174 LYLDINAISGSILDE-IRSLKSLFNLRLGDN--TLSGSIPLSLGNLTNLATLYLDSNALS 230
           L +  N     +    + +L++L  L L  +    S    L L NL++L +L L  N   
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
                       L  L+L    L       P  NL  L VL LS + L       F  L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 290 NLTTLYVYKNSIFGSILDEIG---NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLS 346
            L  L +  N      + +      L  L  + LS   L+     + T+L   +  V LS
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLS 508

Query: 347 SNHIVGEIPLELRKHSSLV 365
            N +       L     + 
Sbjct: 509 HNRLTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 2e-25
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 9/199 (4%)

Query: 173 LLYLDINAISGSILDEIR--SLKSLFNLRLGDNTLSGSIPLSLGNL--TNLATLYLDSNA 228
            L          I   ++  +++SL+     D       P     L   ++ ++ L  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
                 N       L  L+LT+  LS  +P  L  L+ L  L LS NK   L   S  N 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 289 TNLTTLYVYKNSIFGSILDE-IGNLKSLSNINLSLNKLNGS--IPLSLTNLTNSLEVVCL 345
            +LT L +  N+    +    + NL++L  ++LS + +  S    L L NL++ L+ + L
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNL 383

Query: 346 SSNHIVGEIPLELRKHSSL 364
           S N  +       ++   L
Sbjct: 384 SYNEPLSLKTEAFKECPQL 402

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 3e-24
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 6/196 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N +       +   K+L +L      +S    + L N   L +LYL SN +S   
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL--VVLELSDNKLSGLIPPSFGNLTNL 291
           L +    + L  L+  +N +       + +L     + L L+ N ++G I P   +    
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVF 204

Query: 292 TTLYVYKNSIFGSILDEIGN--LKSLSNINLSLNKLNGSIPLSLTNLTN-SLEVVCLSSN 348
            +L          I   + N  ++SL              P     L   S+E + L  +
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 349 HIVGEIPLELRKHSSL 364
           +            S L
Sbjct: 265 YFFNISSNTFHCFSGL 280

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 3e-23
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 7/197 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS-GS 232
           LYL  N IS   L +    + L  L   +N +       + +L     L L+ N      
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGN--LTNLVVLELSDNKLSGLIPPSFGNL-- 288
           I     +      L          I   L N  + +L +    D     + P  F  L  
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            ++ ++ + K+  F    +       L  ++L+   L+  +P  L  L+  L+ + LS+N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSAN 311

Query: 349 HIVGEIPLELRKHSSLV 365
                  +      SL 
Sbjct: 312 KFENLCQISASNFPSLT 328

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 5/162 (3%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L L    +         ++L  L  L L  + L  S       L  L  L L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 233 I---LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
                N +  L  L  L L+   LS        +L  +  ++LS N+L+     +  +L 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL 331
            +  L +  N I   +   +  L     INL  N L+ +   
Sbjct: 525 GIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 22/117 (18%)

Query: 269 VLELSD---------------------NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD 307
                +                     N L  +   +F  L NLT L + +  I+    D
Sbjct: 16  TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
              +   L  + L+ N L      +L+     L+ +      I     + L    +L
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTL 131

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           + L  N ++ S ++ +  LK ++ L L  N +S  +P  L  L+   T+ L  N L  + 
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT- 562

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
                N+  L + +     L  +      N   L  + LSD  LS
Sbjct: 563 ---CSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 3e-29
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 15/191 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+ N +    +  + SL +L +L L +N +S   PLS   LT L  L L +N +S   
Sbjct: 226 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-- 279

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ +  L +L  LEL  N L      P+ NL NL  L L  N +S + P    +LT L  
Sbjct: 280 ISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L+ Y N +  S +  + NL +++ ++   N+++   PL+  NLT  +  + L+       
Sbjct: 336 LFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTR-ITQLGLNDQAWTNA 390

Query: 354 IPLELRKHSSL 364
                   S  
Sbjct: 391 PVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (292), Expect = 3e-29
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +  N +S   +  +  L +L +L   +N +S   PL  G LTNL  L L+ N L    
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD-- 235

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  + +L +L  L+L +N +S   PL    LT L  L+L  N++S + P     LT LT 
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTN 291

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L + +N +    +  I NLK+L+ + L  N ++   P+S  +LT  L+ +   +N +
Sbjct: 292 LELNENQL--EDISPISNLKNLTYLTLYFNNISDISPVS--SLTK-LQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  109 bits (274), Expect = 1e-26
 Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +  L  + +    +D +  L +L  +   +N L+   PL   NLT L  + +++N ++  
Sbjct: 48  VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIAD- 104

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            +  + NL +L  L L +N ++   PL   NLTNL  LELS N +S +   +   LT+L 
Sbjct: 105 -ITPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDI--SALSGLTSLQ 159

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            L         + L  + NL +L  +++S NK+  S    L  LTN LE +  ++N I  
Sbjct: 160 QLSFGNQV---TDLKPLANLTTLERLDISSNKV--SDISVLAKLTN-LESLIATNNQISD 213

Query: 353 EIPLE 357
             PL 
Sbjct: 214 ITPLG 218

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (261), Expect = 7e-25
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 30/203 (14%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
                   I+   +    +L       LG   ++ ++  +  +L  + TL  D   +   
Sbjct: 6   ATITQDTPINQ--IFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-- 59

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            ++ +  L +L  +  ++N L+   PL   NLT LV + +++N+++ + P    NLTNLT
Sbjct: 60  SIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNLT 115

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS-LTNLTN------------- 338
            L ++ N I  + +D + NL +L+ + LS N ++    LS LT+L               
Sbjct: 116 GLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPL 173

Query: 339 ----SLEVVCLSSNHIVGEIPLE 357
               +LE + +SSN +     L 
Sbjct: 174 ANLTTLERLDISSNKVSDISVLA 196

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (253), Expect = 6e-24
 Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 13/177 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N IS   +  +  L +L NL L +N L    P+   NL NL  L L  N +S   
Sbjct: 270 LKLGANQISN--ISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISD-- 323

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + +L  L  L   +N +S      L NLTN+  L    N++S L P    NLT +T 
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L +   +   + ++   N+   + +      L    P ++++  +      ++ N  
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGS-YTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 10/153 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+ N +    +  I +LK+L  L L  N +S   P+S  +LT L  L+  +N +S   
Sbjct: 292 LELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD-- 345

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + NL ++ +L    N +S   PL   NLT +  L L+D   +        N++   T
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           +     ++       I +  S +  +++ N  +
Sbjct: 404 VKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+   N +S   +  + +L ++  L  G N +S   PL+  NLT +  L L+  A + + 
Sbjct: 336 LFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAP 391

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL--IPPSFGNLTNL 291
           +N   N+     ++  +  L    P  + +  +    +++ N  S    +  +F     +
Sbjct: 392 VNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449

Query: 292 TTLYV 296
                
Sbjct: 450 GKGTT 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  117 bits (294), Expect = 6e-29
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 9/193 (4%)

Query: 170 PTWLLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
           P+    +D+  N +         +   L  L L    +      +   L +L+ L L  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFG 286
            +          L SL  L      L+     P+G L  L  L ++ N +    +P  F 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 287 NLTNLTTLYVYKNSIFGSILDEIGNLKSLSN----INLSLNKLNGSIPLSLTNLTNSLEV 342
           NLTNL  + +  N I    ++++  L+        +++SLN ++     +   +   L  
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI--KLHE 208

Query: 343 VCLSSNHIVGEIP 355
           + L  N     I 
Sbjct: 209 LTLRGNFNSSNIM 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (288), Expect = 4e-28
 Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 6/195 (3%)

Query: 174 LYLDINAISGSILD--EIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L L  NA+S S           SL +L L  N     +  +   L  L  L    + L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 232 SI-LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS-FGNLT 289
               +   +L+ L YL+++              LT+L  L+++ N        + F N T
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
           NLT L + K  +          L  L  +N+S N L          L  SL  +  S N 
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNR 532

Query: 350 IVGEIPLELRKHSSL 364
           I     +      SL
Sbjct: 533 IETSKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (286), Expect = 6e-28
 Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 4/181 (2%)

Query: 173 LLYLDINAISGSILDE-IRSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYLDSNALS 230
           L +LD++     I+      L+ L +L    +TL      S   +L  L  L +      
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLP-LGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
                    L SL  L++  N+   +       N TNL  L+LS  +L  +    F  L 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
            L  L +  N++          L SLS ++ S N++  S  +      + L    L++N 
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS-LAFFNLTNNS 556

Query: 350 I 350
           +
Sbjct: 557 V 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (276), Expect = 1e-26
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 6/198 (3%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL--TNLATLYLDSNA 228
            +L  L +    GSI  +  +L SL  L L  N LS S   S  +L   +L  L L  N 
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGN 287
               +      L+ L +L+   +TL          +L  L+ L++S           F  
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 288 LTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLS 346
           LT+L TL +  NS   + L  +  N  +L+ ++LS  +L          L   L+++ +S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR-LQLLNMS 505

Query: 347 SNHIVGEIPLELRKHSSL 364
            N+++        +  SL
Sbjct: 506 HNNLLFLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (267), Expect = 2e-25
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 2/155 (1%)

Query: 174 LYLDINAISGSI-LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L    + +          SL+ L  L +               LT+L TL +  N+   +
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 233 ILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
            L+ +  N  +L +L+L+   L          L  L +L +S N L  L    +  L +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           +TL    N I  S        KSL+  NL+ N + 
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (259), Expect = 2e-24
 Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 9/194 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +    +          L  L +L L  N  S  I      L +L+ L L  NALS S 
Sbjct: 312 LSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 234 LN--EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS-FGNLTN 290
                     SL +L+L+ N     +      L  L  L+   + L  +   S F +L  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L  L +   +           L SL+ + ++ N    +   ++   T +L  + LS   +
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 351 VGEIPLELRKHSSL 364
                        L
Sbjct: 486 EQISWGVFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 9e-23
 Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 5/168 (2%)

Query: 198 LRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI 257
            +  D  LS  +P  +   ++   + L  N L         N   L +L+L+   +    
Sbjct: 16  YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 258 PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSN 317
                 L +L  L L+ N +    P SF  LT+L  L   +  +       IG L +L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 318 INLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
           +N++ N ++   +P   +NLTN L  V LS N+I      +L+     
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTN-LVHVDLSYNYIQTITVNDLQFLREN 179

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.5 bits (238), Expect = 9e-22
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +  + +  +S   L+++       +L +    L         +L  L +L L  N    S
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKG--S 341

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL--TNLVVLELSDNKLSGLIPPSFGNLTN 290
           I  +   L SL YL+L+ N LS S      +L   +L  L+LS N    ++  +F  L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 291 LTTLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
           L  L    +++          +L+ L  +++S              LT+ L  + ++ N 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNS 459

Query: 350 IVGEIP 355
                 
Sbjct: 460 FKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 174 LYLDINAISGSILDEIRSLK----SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229
           + L  N I    +++++ L+       +L +  N +   I         L  L L  N  
Sbjct: 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFN 216

Query: 230 SGSILNE-IGNLKSLYYLELTSNTLSGSIPLP------LGNLTNLVVLEL--SDNKLSGL 280
           S +I+   + NL  L+   L          L       +  L ++ + E   +       
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSL 340
               F  L N++ + +   SI    L+++       ++++   +L     L L      L
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----L 330

Query: 341 EVVCLSSNHI 350
           + + L+ N  
Sbjct: 331 KSLTLTMNKG 340

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 255 GSIPLPLGNLTNLVVLELSD---------------------NKLSGLIPPSFGNLTNLTT 293
           GS+   +  + N+      D                     N L  L   SF N + L  
Sbjct: 2   GSLNPCIEVVPNITYQ-CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L + +  I          L  LSN+ L+ N +    P S + LT+ LE +      +   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS-LENLVAVETKLASL 119

Query: 354 IPLELRKHSSL 364
               + +  +L
Sbjct: 120 ESFPIGQLITL 130

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  117 bits (294), Expect = 7e-29
 Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 22/207 (10%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSG- 231
           L    N +    L+   +   L +L+L  N +   IP         +  L    N L   
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 232 SILNEIGNLKSLYYLELTSNTLSG-----SIPLPLGNLTNLVVLELSDNKLSGLIPPSFG 286
             +    ++  +  ++ + N +       S  +      N   + LS N++       F 
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 287 NLTNLTTLYVYKNSI-------FGSILDEIGNLKSLSNINLSLNKLNGSIP--LSLTNLT 337
             + ++T+ +  N +                N   L+ I+L  NKL  S+      T L 
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753

Query: 338 NSLEVVCLSSNHIVGEIPLELRKHSSL 364
             L  + +S N      P +    S L
Sbjct: 754 Y-LSNMDVSYNCF-SSFPTQPLNSSQL 778

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (292), Expect = 1e-28
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 22/197 (11%)

Query: 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG------SIPLSLGNLTNLATLY 223
              L   D+   + +   E++ +K    + L D  +         I  ++  LT L  +Y
Sbjct: 395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIY 454

Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPP 283
             ++  +   +       +  Y          +  L   NL +L  +EL +      +P 
Sbjct: 455 FANSPFTYDNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD 509

Query: 284 SFGNLTNLTTLYVYKNSI---------FGSILDEIGNLKSLSNINLSLNKLNG-SIPLSL 333
              +L  L +L +  N           +  + D+      +    +  N L       SL
Sbjct: 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569

Query: 334 TNLTNSLEVVCLSSNHI 350
             +   L ++    N +
Sbjct: 570 QKMVK-LGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (282), Expect = 2e-27
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 26/197 (13%)

Query: 174 LYLDINAISG-----SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228
           +    N I       S   +     +   + L  N +           + ++T+ L +N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 229 LS-------GSILNEIGNLKSLYYLELTSNTLSGSIP--LPLGNLTNLVVLELSDNKLSG 279
           ++               N   L  ++L  N L+ S+        L  L  +++S N  S 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 280 LIPPSFGNLTNLTTLYVYK------NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSL 333
             P    N + L    +        N I       I    SL  + +  N +   +    
Sbjct: 768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD--- 822

Query: 334 TNLTNSLEVVCLSSNHI 350
             LT  L ++ ++ N  
Sbjct: 823 EKLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 4e-27
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIP--LSLGNLTNLATLYLDSNALS 230
           L LD N I   I ++       +  L    N L   IP   +  ++  + ++    N + 
Sbjct: 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 231 G-----SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL----- 280
                 S   +     +   + L+ N +           + +  + LS+N ++ +     
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 281 --IPPSFGNLTNLTTLYVYKNSIFGSILDEI--GNLKSLSNINLSLNKLNGSIPLSLTNL 336
                ++ N   LTT+ +  N +  S+ D+     L  LSN+++S N  + S P    N 
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNS 775

Query: 337 TN-----SLEVVCLSSNHIVGEIPLELRKHSSL 364
           +               N I+ + P  +    SL
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 9e-25
 Identities = 34/258 (13%), Positives = 75/258 (29%), Gaps = 49/258 (18%)

Query: 147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS 206
           ++  LD  +  Y        +    W    +++        ++ +   +  L L      
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI-PLPLGNLT 265
           G +P ++G LT L  L   +++ + S         +    E   + +      + L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 266 NLVVLELSDNKLSGL----------------------------IPPSFGNLTNLTTLYVY 297
            L + +L  + ++                              I  +   LT L  +Y  
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 298 KNSIFGSIL-------------------DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN 338
            +      +                       NLK L+++ L        +P  L +L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 339 SLEVVCLSSNHIVGEIPL 356
            L+ + ++ N  +    L
Sbjct: 517 -LQSLNIACNRGISAAQL 533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 4e-19
 Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 20/168 (11%)

Query: 174 LYLDINAIS-------GSILDEIRSLKSLFNLRLGDNTLSGSIP--LSLGNLTNLATLYL 224
           + L  N ++              ++   L  + L  N L+ S+        L  L+ + +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760

Query: 225 DSNALSGSILNEIGNLKSLYYLEL------TSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
             N  S S   +  N   L    +        N +    P  +    +L+ L++  N + 
Sbjct: 761 SYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 279 GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
             +         L  L +  N      +  +          L  +K  
Sbjct: 820 K-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (261), Expect = 1e-25
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 8/193 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-S 232
           L+   N IS  +       +   N+ L +N ++    L  G  + +  L L  N +   +
Sbjct: 104 LHAANNNIS-RV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
                 +  +L +L L  N +   +         L  L+LS NKL+  + P F +   +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            + +  N +   I   +   ++L + +L  N  +        +    ++ V   +   + 
Sbjct: 218 WISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 353 EIPLELRKHSSLV 365
               E     +L 
Sbjct: 277 GQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 7e-25
 Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 25/210 (11%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +  +  +++  ++    +S  ++  L L  N LS      L   T L  L L SN L   
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIP-----------------LPLGNLTNLVVLELSDN 275
              ++ +L +L  L+L +N +   +                  +          + L++N
Sbjct: 73  -TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLSNINLSLNKLNGSIPLSLT 334
           K++ L     G  + +  L +  N I   +  +   +  +L ++NL  N +   +     
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQV 188

Query: 335 NLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
                L+ + LSSN +   +  E +  + +
Sbjct: 189 VFAK-LKTLDLSSNKLA-FMGPEFQSAAGV 216

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 1e-22
 Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSL 243
           +I +  ++       ++ D++L  ++     +  N+  L L  N LS     ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 244 YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
             L L+SN L       L +L+ L  L+L++N +            ++ TL+   N+I  
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-S 112

Query: 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            +       +   NI L+ NK+     L     +  ++ + L  N I
Sbjct: 113 RV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
           +I     N        +  ++L  ++ +   +  ++  L+L+ N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327
            +L LS N L         +L+ L TL +  N +      E+    S+  ++ + N ++ 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 328 SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
                     N    + L++N I     L+    S +
Sbjct: 114 VSCSRGQGKKN----IYLANNKITMLRDLDEGCRSRV 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 99.6 bits (249), Expect = 5e-25
 Identities = 34/167 (20%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250
           + K+  N  LG ++ +    ++   + +L  + L +  ++   L  I    ++  L + +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75

Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIG 310
              +   P+    L+NL  L +    ++    P+   LT+LT L +  ++   SIL +I 
Sbjct: 76  IHATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 311 NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE 357
            L  +++I+LS N     I   L  L   L+ + +  + +     +E
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPE-LKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           + L    ++   L  I    ++ +L + +   +   P+S   L+NL  L +    ++   
Sbjct: 49  ITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDK 104

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  +  L SL  L+++ +    SI   +  L  +  ++LS N     I P    L  L +
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKS 163

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327
           L +  + +       I +   L+ +      + G
Sbjct: 164 LNIQFDGV--HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +    ++   +  +  L SL  L +  +    SI   +  L  + ++ L  N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL 280
              +  L  L  L +  + +       + +   L  L      + G 
Sbjct: 153 -MPLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGGK 196

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 6e-24
 Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 25/210 (11%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +  +  +++  ++    +S  ++  L L  N LS      L   T L  L L SN L   
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE- 72

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIP-----------------LPLGNLTNLVVLELSDN 275
              ++ +L +L  L+L +N +   +                  +          + L++N
Sbjct: 73  -TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130

Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLSNINLSLNKLNGSIPLSLT 334
           K++ L     G  + +  L +  N I   +  +   +  +L ++NL  N +   +     
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQV 188

Query: 335 NLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
                L+ + LSSN +   +  E +  + +
Sbjct: 189 VFAK-LKTLDLSSNKLA-FMGPEFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (252), Expect = 1e-23
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 8/193 (4%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-S 232
           L+   N IS          +   N+ L +N ++    L  G  + +  L L  N +   +
Sbjct: 104 LHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
                 +  +L +L L  N +   +         L  L+LS NKL+  + P F +   +T
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
            + +  N +   I   +   ++L + +L  N  +        +    ++ V   +   + 
Sbjct: 218 WISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 353 EIPLELRKHSSLV 365
               E     +L 
Sbjct: 277 GQNEEECTVPTLG 289

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.0 bits (231), Expect = 6e-21
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 11/167 (6%)

Query: 184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSL 243
           +I +  ++       ++ D++L  ++     +  N+  L L  N LS     ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 244 YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
             L L+SN L       L +L+ L  L+L++N +            ++ TL+   N+I  
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-- 111

Query: 304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           S +      +   NI L+ NK+     L     +  ++ + L  N I
Sbjct: 112 SRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.4 bits (214), Expect = 7e-19
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 11/158 (6%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
           +I     N        +  ++L  ++ +   +  ++  L+L+ N LS      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327
            +L LS N L         +L+ L TL +  N +      E+    S+  ++ + N ++ 
Sbjct: 61  ELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 328 SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
                     N +    L++N I     L+    S + 
Sbjct: 114 VSCSRGQGKKN-IY---LANNKITMLRDLDEGCRSRVQ 147

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 15/219 (6%), Positives = 46/219 (21%), Gaps = 31/219 (14%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           + L  N +   I   +R  ++L +  L  N       L      N     +    +    
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 234 LNEIGNLKSLYYLELTSNTLS----------------------------GSIPLPLGNLT 265
                           +                                  +     N  
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336

Query: 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL 325
               ++    +   +I           TL   K ++   + +       L          
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

Query: 326 NGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
              +  +    +    +  +   +    +  +  +++++
Sbjct: 397 I-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 14/155 (9%), Positives = 35/155 (22%), Gaps = 1/155 (0%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRL-GDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
                   +     D + +LK   +  L G  + +  +     N      +         
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
            I       ++   LE     L   +         L            L   +       
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
               + K      +  +     ++ + ++  +K  
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 20/159 (12%), Positives = 39/159 (24%), Gaps = 3/159 (1%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           LL    +     +  E  +      +          I           TL     AL   
Sbjct: 317 LLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           + N       L      +      +       + L +L     +   +         N  
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434

Query: 293 TLYVYKNSIFGSILDEIGNLKSLS-NINLSLNKLNGSIP 330
             +         + +E   LK L+   +L+L   N ++ 
Sbjct: 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.0 bits (247), Expect = 8e-24
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 15/184 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L      ++   ++ ++ L +L  L L DN ++   PL   NLT +  L L  N L    
Sbjct: 46  LSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLK--N 99

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ I  L+S+  L+LTS  ++  +  PL  L+NL VL L  N+++ + P     LTNL  
Sbjct: 100 VSAIAGLQSIKTLDLTSTQIT-DVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY 155

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +    +  S L  + NL  L+ +    NK++  I   L +L N L  V L +N I   
Sbjct: 156 LSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DIS-PLASLPN-LIEVHLKNNQISDV 210

Query: 354 IPLE 357
            PL 
Sbjct: 211 SPLA 214

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.1 bits (242), Expect = 4e-23
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 12/177 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N +    +  I  L+S+  L L    ++   PL+   L+NL  LYLD N ++   
Sbjct: 90  LELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQITN-- 143

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ +  L +L YL + +  +S  +  PL NL+ L  L+  DNK+S +      +L NL  
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKISDI--SPLASLPNLIE 199

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           +++  N I  S +  + N  +L  + L+   +         NL     V   S   I
Sbjct: 200 VHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.5 bits (238), Expect = 1e-22
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 13/178 (7%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
            + +     + +       L  +  L      ++ +I   +  L NL  L L  N ++  
Sbjct: 21  AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD- 77

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            L  + NL  +  LEL+ N L  ++   +  L ++  L+L+  +++ + P     L+NL 
Sbjct: 78  -LAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQ 132

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            LY+  N I  + +  +  L +L  +++   +++   PL+  NL+  L  +    N I
Sbjct: 133 VLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA--NLSK-LTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)

Query: 213 LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272
              L N   +    + ++        +L  +  L      ++ +I   +  L NL+ LEL
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS 332
            DN+++ L P    NLT +T L +  N +    +  I  L+S+  ++L+  ++    PL+
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 333 LTNLTNSLEVVCLSSNHIVGEIPLE 357
              L+N L+V+ L  N I    PL 
Sbjct: 127 --GLSN-LQVLYLDLNQITNISPLA 148

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 12/162 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L    I+   +  +  L +L  L L  N ++   PL+   LTNL  L + +  +S   
Sbjct: 112 LDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSD-- 165

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           L  + NL  L  L+   N +S  I  PL +L NL+ + L +N++S + P    N +NL  
Sbjct: 166 LTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
           + +   +I  +      N   +    +         P ++++
Sbjct: 222 VTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LYLD+N I+   +  +  L +L  L +G+  +S   PL+  NL+ L TL  D N +S   
Sbjct: 134 LYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISD-- 187

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           ++ + +L +L  + L +N +S  +  PL N +NL ++ L++  ++        NL     
Sbjct: 188 ISPLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLT 334
           +     +        I +  + ++ NL+ N  +    +S T
Sbjct: 246 VKGPSGAPI--APATISDNGTYASPNLTWNLTSFINNVSYT 284

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNIN 319
           P   L N + +    + ++  +     +L  +TTL  +   +  + ++ +  L +L  + 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLE 69

Query: 320 LSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L  N++    PL   NLT  +  + LS N +
Sbjct: 70  LKDNQITDLAPLK--NLTK-ITELELSGNPL 97

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 8e-24
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N +         S   L  L L    +      +  +L++L+TL L  N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLT 292
           L     L SL  L      L+     P+G+L  L  L ++ N +    +P  F NLTNL 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSN----INLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            L +  N I      ++  L  +      ++LSLN +N   P +   +   L  + L +N
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTLRNN 210

Query: 349 HIVGEIP 355
                + 
Sbjct: 211 FDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 8e-23
 Identities = 39/161 (24%), Positives = 58/161 (36%), Gaps = 4/161 (2%)

Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
           S  NL L  N L      S  +   L  L L    +         +L  L  L LT N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI-FGSILDEIGNL 312
                     L++L  L   +  L+ L     G+L  L  L V  N I    + +   NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 313 KSLSNINLSLNKLNGSIP---LSLTNLTNSLEVVCLSSNHI 350
            +L +++LS NK+          L  +      + LS N +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.8 bits (223), Expect = 8e-20
 Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 12/196 (6%)

Query: 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS- 230
            L+                 LKSL  L    N    +      +L +L  L L  N LS 
Sbjct: 310 ELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSF 361

Query: 231 -GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPS-FGNL 288
            G          SL YL+L+ N +  ++      L  L  L+   + L  +   S F +L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            NL  L +       +       L SL  + ++ N    +    +     +L  + LS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 349 HIVGEIPLELRKHSSL 364
            +    P      SSL
Sbjct: 481 QLEQLSPTAFNSLSSL 496

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 6e-19
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 4/144 (2%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
            IP +L    +   L L  N L         +   L  L+L+   +         +L++L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN- 326
             L L+ N +  L   +F  L++L  L   + ++       IG+LK+L  +N++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 327 GSIPLSLTNLTNSLEVVCLSSNHI 350
             +P   +NLTN LE + LSSN I
Sbjct: 139 FKLPEYFSNLTN-LEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 174 LYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L    + +   + +     SL++L  L +       +       L++L  L +  N+   
Sbjct: 401 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
           + L +I   L++L +L+L+   L    P    +L++L VL ++ N+L  +    F  LT+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 291 LTTLYVYKNSI 301
           L  ++++ N  
Sbjct: 520 LQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 19/195 (9%)

Query: 166 HVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYL 224
            +      L L +N ++  I         L  L L +N  S ++    +  L  L    L
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 225 ------DSNALSGSILNEIGNLKSLYYLELTSNTLSGS---IPLPLGNLTNLVVLELSDN 275
                 +   L     + +  L +L   E     L      I      LTN+    L   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 276 KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
            +  +    F        L +           ++ +LK L     + NK   +   S  +
Sbjct: 293 TIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAF--SEVD 345

Query: 336 LTNSLEVVCLSSNHI 350
           L + LE + LS N +
Sbjct: 346 LPS-LEFLDLSRNGL 359

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.1 bits (241), Expect = 3e-22
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           +  + + I    +  I+ L ++  L L  N L+  I   L NL NL  L+LD N +    
Sbjct: 48  IIANNSDIK--SVQGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKI--KD 101

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           L+ + +LK L  L L  N +S  I   L +L  L  L L +NK++ +       LT L T
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +  N I  S +  +  L  L N+ LS N ++  +  +L  L N L+V+ L S   + +
Sbjct: 158 LSLEDNQI--SDIVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKN-LDVLELFSQECLNK 212

Query: 354 IPLELRKHSSL 364
                      
Sbjct: 213 PINHQSNLVVP 223

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 4e-18
 Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 10/169 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+LD N I    L  ++ LK L +L L  N +S  I   L +L  L +LYL +N ++   
Sbjct: 92  LFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT--D 145

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  +  L  L  L L  N +S  I  PL  LT L  L LS N +S L       L NL  
Sbjct: 146 ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDV 201

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
           L ++        ++   NL   + +  +   L     +S         V
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.1 bits (202), Expect = 3e-17
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 16/159 (10%)

Query: 192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251
           +            +    P             L   +++         L S+  +   ++
Sbjct: 1   MGETI---TVSTPIKQIFPDD--AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNS 53

Query: 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311
            +  S+   +  L N+  L L+ NKL+ + P    NL NL  L++ +N I    L  + +
Sbjct: 54  DIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI--KDLSSLKD 107

Query: 312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           LK L +++L  N ++  I   L +L   LE + L +N I
Sbjct: 108 LKKLKSLSLEHNGIS-DIN-GLVHLPQ-LESLYLGNNKI 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 6e-11
 Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 6/168 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LYL  N I+   +  +  L  L  L L DN +S  I   L  LT L  LYL  N +S   
Sbjct: 136 LYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--D 189

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           L  +  LK+L  LEL S            NL     ++ +D  L      S         
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLE 341
           +  +       +        ++       +         +  ++  ++
Sbjct: 250 VKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 1e-21
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 3/177 (1%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGS 232
           L L  N +  ++      L+ L +L    + L      S+  +L NL  L +       +
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSI-PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
                  L SL  L++  N+   +  P     L NL  L+LS  +L  L P +F +L++L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
             L +  N+ F         L SL  ++ SLN +  S    L +  +SL  + L+ N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS--GSIPLSLGNLTNLATLYLDSNA 228
              L L+ N +          L  L  L L  N LS  G    S    T+L  L L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGN 287
           +  ++ +    L+ L +L+   + L          +L NL+ L++S           F  
Sbjct: 90  VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 288 LTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLS 346
           L++L  L +  NS   + L +I   L++L+ ++LS  +L   +  +  N  +SL+V+ +S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 207

Query: 347 SNHI 350
            N+ 
Sbjct: 208 HNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 174 LYLDINAISGSILDE--IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG 231
           L    + +   + +     SL++L  L +       +       L++L  L +  N+   
Sbjct: 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
           + L +I   L++L +L+L+   L    P    +L++L VL +S N    L    +  L +
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 291 LTTLYVYKNSIFGSILDE---IGNLKSLSNINLSLNKLN 326
           L  L    N I      +        SL+ +NL+ N   
Sbjct: 225 LQVLDYSLNHI--MTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI-FGSILDEI-GNLKSLS 316
           +P G  ++   LEL  NKL  L    F  LT LT L +  N + F     +      SL 
Sbjct: 22  VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 317 NINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            ++LS N +  ++  +   L   LE +    +++
Sbjct: 82  YLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNL 113

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 4e-21
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 8/183 (4%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T LL L  N I    ++  + L+ L  L+L  N +      +   L NL TL L  N L+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 231 GSILNEI-GNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSD-NKLSGLIPPSFGN 287
            +I N     L  L  L L +N +  SIP      + +L  L+L +  +LS +   +F  
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS 347
           L+NL  L +   ++    +  +  L  L  ++LS N L+   P S   L + L+ + +  
Sbjct: 184 LSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQ 240

Query: 348 NHI 350
           + I
Sbjct: 241 SQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 12/180 (6%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYL-DSNALS 230
           L L  N ++ +I +     L  L  L L +N +  SIP      + +L  L L +   LS
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
                    L +L YL L    L   IP  L  L  L  L+LS N LS + P SF  L +
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 291 LTTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
           L  L++ ++ I   +++     NL+SL  INL+ N L   +P  L    + LE + L  N
Sbjct: 233 LQKLWMIQSQI--QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249
             L +L  L L    L   IP +L  L  L  L L  N LS         L  L  L + 
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
            + +         NL +LV + L+ N L+ L    F  L +L  ++++ N  
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           +   L L  N +         +L +L +L+LS N +  +   +F  L NL TL ++ N +
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 302 FGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS-NHI 350
             + +       L  L  + L  N +  SIP    N   SL  + L     +
Sbjct: 125 --TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 7e-21
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 14/181 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LYL  N +   + +++   K+L  LR+ +N ++         L  +  + L +N L  S 
Sbjct: 105 LYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 234 LNE--IGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
           +       +K L Y+ +    ++    +P G   +L  L L  NK++ +   S   L NL
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218

Query: 292 TTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
             L +  NSI  S +D   + N   L  ++L+ NKL   +P  L +    ++VV L +N+
Sbjct: 219 AKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNNN 274

Query: 350 I 350
           I
Sbjct: 275 I 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSI--PLSLGNLTNLATLYLDSNALS 230
           L +  N I+  +   +   L  +  + LG N L  S     +   +  L+ + +    ++
Sbjct: 126 LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLP-LGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
            +I    G   SL  L L  N ++  +    L  L NL  L LS N +S +   S  N  
Sbjct: 185 -TI--PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG------SIPLSLTNLTNSLEVV 343
           +L  L++  N +   +   + + K +  + L  N ++         P   T   +    V
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS-YSGV 298

Query: 344 CLSSNHI 350
            L SN +
Sbjct: 299 SLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 28/217 (12%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T LL L  N I+     + ++LK+L  L L +N +S   P +   L  L  LYL  N L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL-SGLIPP-SFGNL 288
             +       K+L  L +  N ++         L  ++V+EL  N L S  I   +F  +
Sbjct: 114 -EL--PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 289 TNLTTLYVYKNSI-------FGSI---------LDEIG-----NLKSLSNINLSLNKLNG 327
             L+ + +   +I         S+         + ++       L +L+ + LS N ++ 
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 328 SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
               SL N  + L  + L++N +V ++P  L  H  +
Sbjct: 231 VDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L+LD N I+  +     + L +L  L L  N++S     SL N  +L  L+L++N L   
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 233 ILNEIGNLKSLYYLELTSNTLSG------SIPLPLGNLTNLVVLELSDNKLSGL-IPPS- 284
           +   + + K +  + L +N +S         P       +   + L  N +    I PS 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 285 FGNLTNLTTLYVYKN 299
           F  +     + +   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 241 KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS 300
                L+L +N ++        NL NL  L L +NK+S + P +F  L  L  LY+ KN 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           +    L E    K+L  + +  N++          L   + VV L +N +
Sbjct: 112 L--KELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPL 157

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-- 231
           L L  N+IS      + +   L  L L +N L   +P  L +   +  +YL +N +S   
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 232 ----SILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNK 276
                         S   + L SN +     +       +     ++L + K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYW-EIQPSTFRCVYVRAAVQLGNYK 330

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.9 bits (231), Expect = 7e-21
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 5/180 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N I+     ++R+  +L  L L  + ++     +  +L +L  L L  N LS   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLP--LGNLTNLVVLELSD-NKLSGLIPPSFGNLTN 290
            +  G L SL YL L  N    ++ +     NLTNL  L + +    S +    F  LT+
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L  L +   S+       + +++ + ++ L L++    + +    L++ +  + L   ++
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS-VRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 174 LYLDINAISGSILDE---IRSLKSLFNLRLGDNTLS--GSIPLSLGNLTNLATLYLDSNA 228
           L L  N +    L       +  SL  L L  N L         L  L NL +L +  N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
               + +     + + +L L+S  +     +       L VL++S+N L          L
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLDSF----SLFL 450

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
             L  LY+ +N +    L +      L  + +S N+L  S+P  + +   SL+ + L +N
Sbjct: 451 PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

Query: 349 HIV 351
              
Sbjct: 508 PWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250
           S  +         + + SIP  L     + +L L  N ++     ++    +L  L L S
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEI 309
           + ++        +L +L  L+LSDN LS L    FG L++L  L +  N      +    
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 310 GNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSSNHI 350
            NL +L  + +   +    I  +    LT+ L  + + +  +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTS-LNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 29/210 (13%), Positives = 71/210 (33%), Gaps = 19/210 (9%)

Query: 174 LYLDINAISG-SILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSG 231
           L L  N      +     +L +L  LR+G+      I  +    LT+L  L + + +L  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
                + +++ +++L L  +  +  + +    L+++  LEL D  L+             
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222

Query: 292 TTLYVYKNSI----------FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN--- 338
           + +                    +L  I  L  +   + +LN L    P     ++    
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 339 ----SLEVVCLSSNHIVGEIPLELRKHSSL 364
               ++  + +   ++  ++         +
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 22/214 (10%)

Query: 172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS----GSIPLSLGNLTNLATLYLDSN 227
            L   ++     S L        +  L    + L+      +   L  +  L+ +  D  
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 228 ALSG---------SILNEIGNLK--SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
            L+G          +++E+G ++  ++  L +    L   +      L  +  + + ++K
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE---IGNLKSLSNINLSLNKLN--GSIPL 331
           +  +      +L +L  L + +N +    L      G   SL  + LS N L        
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 332 SLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
            L  L N L  + +S N     +P   +    + 
Sbjct: 382 ILLTLKN-LTSLDISRNTF-HPMPDSCQWPEKMR 413

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 12/131 (9%)

Query: 173 LLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           L  LDI  N     + D  +  + +  L L    +   +         L  L + +N L 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD 444

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
            S    +  L+ LY   ++ N L  ++P        L+V+++S N+L  +    F  LT+
Sbjct: 445 -SFSLFLPRLQELY---ISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 291 LTTLYVYKNSI 301
           L  ++++ N  
Sbjct: 499 LQKIWLHTNPW 509

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 9e-21
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 6/183 (3%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           +  ++L  N IS       R+ ++L  L L  N L+     +   L  L  L L  NA  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 231 GSILNEI-GNLKSLYYLELTSNTLSGSIPLP-LGNLTNLVVLELSDNKLSGLIPPSFGNL 288
            S+       L  L+ L L    L   +       L  L  L L DN L  L   +F +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 289 TNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS 347
            NLT L+++ N I  S+ +     L SL  + L  N++    P +  +L   L  + L +
Sbjct: 153 GNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFA 210

Query: 348 NHI 350
           N++
Sbjct: 211 NNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.1 bits (219), Expect = 5e-20
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 10/180 (5%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYLDSNALSG 231
           L+L  N ++  I       L  L  L L DN    S+  +    L  L TL+LD   L  
Sbjct: 61  LWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
            +   +   L +L YL L  N L  ++P     +L NL  L L  N++S +   +F  L 
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 290 NLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
           +L  L +++N +   +      +L  L  + L  N L+ ++P        +L+ + L+ N
Sbjct: 178 SLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 4/159 (2%)

Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
           +   + L  N +S     S     NL  L+L SN L+         L  L  L+L+ N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 254 SGSIPLP-LGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GN 311
             S+       L  L  L L    L  L P  F  L  L  LY+  N++  ++ D+   +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRD 151

Query: 312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L +L+++ L  N+++     +   L + L+ + L  N +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE--IGNLKSLS 316
           +P+G       + L  N++S +   SF    NLT L+++ N +  + +D      L  L 
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLE 83

Query: 317 NINLSLNKLNGSIPLS-LTNLTNSLEVVCLSSNHI 350
            ++LS N    S+  +    L   L  + L    +
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRCGL 117

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 1e-20
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T  L L  N I     D  R L  L  L+LG N++      +   L +L TL L  N L+
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 231 GSILNEI-GNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSD-NKLSGLIPPSFGN 287
             I +     L  L  L L +N +  SIP      + +L+ L+L +  KL  +   +F  
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS 347
           L NL  L +   +I    +  +  L  L  + +S N      P S   L++ L+ + + +
Sbjct: 195 LFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS-LKKLWVMN 251

Query: 348 NHI 350
           + +
Sbjct: 252 SQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 14/183 (7%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDSNALSG 231
           L L  N+I   I       L SL  L L DN L+  IP  +   L+ L  L+L +N +  
Sbjct: 104 LQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE- 160

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPLP-LGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
           SI +     + SL  L+L        I       L NL  L L    +  +  P+   L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLV 218

Query: 290 NLTTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS 347
            L  L +  N      +       L SL  + +  ++++     +   L + L  + L+ 
Sbjct: 219 GLEELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAH 275

Query: 348 NHI 350
           N++
Sbjct: 276 NNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDSNALSG 231
           L+L  N I  SI       + SL  L LG+      I   +   L NL  L L    +  
Sbjct: 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
             +  +  L  L  LE++ N      P     L++L  L + ++++S +   +F  L +L
Sbjct: 211 --MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 292 TTLYVYKN---SIFGSILDEIGNLKSLSNINLSLN 323
             L +  N   S+   +      L+ L  ++L  N
Sbjct: 269 VELNLAHNNLSSLPHDLFT---PLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT 249
             L +L  L LG   +   +P +L  L  L  L +  N            L SL  L + 
Sbjct: 193 EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           ++ +S         L +LV L L+ N LS L    F  L  L  L+++ N  
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           +  YL L  N +         +L +L VL+L  N +  +   +F  L +L TL ++ N +
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 302 FGSILDE--IGNLKSLSNINLSLNKLNGSIPL-SLTNLTNSLEVVCLSS-NHI 350
             +++       L  L  + L  N +  SIP  +   + + L  + L     +
Sbjct: 136 --TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS-LMRLDLGELKKL 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL 229
           P  L YL ++      L E+++   L  + + +N+L   +P    +L     +   +N L
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQL 185

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
               L E+ NL  L  +   +N+L   +P    +L ++V     +N L     P   NL 
Sbjct: 186 --EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE--ELPELQNLP 237

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
            LTT+Y   N +  ++ D   +L++L   N+  N L   +P    +LT  L+V     + 
Sbjct: 238 FLTTIYADNNLL-KTLPDLPPSLEAL---NVRDNYLT-DLPELPQSLTF-LDVSENIFSG 291

Query: 350 IVGEIP 355
           +    P
Sbjct: 292 LSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPL---------------SLGNLTN 218
           L    N+++  + +  +SLKSL         LS   PL                L N + 
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154

Query: 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
           L  + +D+N+L   + +   +L+ +      +N L   +P  L NL  L  +   +N L 
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPSLEFIA---AGNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208

Query: 279 GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN 338
            L         +L ++    N +    L E+ NL  L+ I    N L  ++P    +L  
Sbjct: 209 KLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA 261

Query: 339 SLEVVCLSSNHI 350
               + +  N++
Sbjct: 262 ----LNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 33/190 (17%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL-------------TNLA 220
                + ++  +  E  ++KS        +    + P   G                   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 221 TLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL 280
            L L++  LS S+     +L+SL     + N+L+  +P    +L +L+V   +   LS L
Sbjct: 75  ELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSL 340
            P        L  L V  N +    L E+ N   L  I++  N L   +P    +L    
Sbjct: 130 PP-------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF-- 177

Query: 341 EVVCLSSNHI 350
             +   +N +
Sbjct: 178 --IAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 24/188 (12%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L ++         L E+++L  L  +   +N+L   +P    +L    ++   +N L   
Sbjct: 175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNIL--E 228

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
            L E+ NL  L  +   +N L  ++P    +L     L + DN L+ L P    +LT L 
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLTDL-PELPQSLTFLD 283

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
                 + +     +   NL  L   N S N++      SL +L  SLE + +S+N ++ 
Sbjct: 284 VSENIFSGLS----ELPPNLYYL---NASSNEIR-----SLCDLPPSLEELNVSNNKLI- 330

Query: 353 EIPLELRK 360
           E+P    +
Sbjct: 331 ELPALPPR 338

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 27/174 (15%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250
           S   L       + L+  +P+   N+ +    Y   +    +     G  + +    L  
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIG 310
                              LEL++  LS L P       +L +L    NS+   + +   
Sbjct: 68  C-----------LDRQAHELELNNLGLSSL-PEL---PPHLESLVASCNSL-TELPELPQ 111

Query: 311 NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
           +LKSL   N +L          L++L   LE + +S+N +  ++P EL+  S L
Sbjct: 112 SLKSLLVDNNNLKA--------LSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFL 155

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 28/192 (14%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L +LD++    S L E+    +L+ L    N +  S+     +L     L + +N L   
Sbjct: 279 LTFLDVSENIFSGLSEL--PPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-E 331

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           +      L+ L     + N L+  +P    NL     L +  N L    P    ++ +L 
Sbjct: 332 LPALPPRLERLI---ASFNHLA-EVPELPQNLK---QLHVEYNPLREF-PDIPESVEDLR 383

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG 352
                 NS    + +   NLK L   ++  N L    P    ++ +    + ++S  +V 
Sbjct: 384 M-----NSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPESVED----LRMNSERVVD 430

Query: 353 EIPLELRKHSSL 364
                      L
Sbjct: 431 PYEFAHETTDKL 442

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 33/169 (19%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L    N I  S+ D   SL+ L    + +N L   +P     L  L       N L+  +
Sbjct: 302 LNASSNEIR-SLCDLPPSLEELN---VSNNKLI-ELPALPPRLERL---IASFNHLA-EV 352

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT----------------NLVVLELSDNKL 277
                NLK L+   +  N L    P    ++                 NL  L +  N L
Sbjct: 353 PELPQNLKQLH---VEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 278 SGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
               P    ++ +L    +    +             L +     +  +
Sbjct: 409 REF-PDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 14/91 (15%)

Query: 280 LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN- 338
            I P   + T L     + +++   +  E  N+KS +    + ++   + P         
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 339 -----------SLEVVCLSSNHIVGEIPLEL 358
                          + L++  +   +P   
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELP 90

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 4e-20
 Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 7/199 (3%)

Query: 170 PTWLLYLDI--NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN 227
           PT    LD+  N I     DE  S   L  L L +N +S   P +  NL NL TL L SN
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 228 ALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFG 286
            L   I   +   L +L  L+++ N +   +     +L NL  LE+ DN L  +   +F 
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 287 NLTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL 345
            L +L  L + K ++  SI  E   +L  L  + L    +N     S   L   L+V+ +
Sbjct: 150 GLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-LKVLEI 207

Query: 346 SSNHIVGEIPLELRKHSSL 364
           S    +  +        +L
Sbjct: 208 SHWPYLDTMTPNCLYGLNL 226

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 7/180 (3%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L +  N +   I       L SL  L L    L+     +L +L  L  L L    ++  
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
                  L  L  LE++      ++        NL  L ++   L+ +   +  +L  L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 293 TLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            L +  N I  S ++   +  L  L  I L   +L    P +   L   L V+ +S N +
Sbjct: 252 FLNLSYNPI--STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 9e-15
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSGS 232
           L +       ++        +L +L +    L+ ++P L++ +L  L  L L  N +S +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 233 ILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
           I   +   L  L  ++L    L+   P     L  L VL +S N+L+ L    F ++ NL
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 292 TTLYVYKNSI 301
            TL +  N +
Sbjct: 323 ETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSN 317
           +P G  T   +L+L  N++  L    F +  +L  L + +N +  ++      NL +L  
Sbjct: 26  VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRT 84

Query: 318 INLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           + L  N+L   IPL +    ++L  + +S N I
Sbjct: 85  LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L +    ++      +R L  L  L L  N +S      L  L  L  + L    L+   
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLS 278
                 L  L  L ++ N L+ ++      ++ NL  L L  N L+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 42/184 (22%), Positives = 76/184 (41%), Gaps = 17/184 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N ++  +  ++  + SLF+  +  N LS     +L     +  L    N+++  +
Sbjct: 170 LQLSSNRLT-HV--DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VV 220

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                    L  L+L  N L+      L N   LV ++LS N+L  ++   F  +  L  
Sbjct: 221 --RGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           LY+  N +  ++      + +L  ++LS N L   +  +       LE + L  N IV  
Sbjct: 277 LYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSIV-T 332

Query: 354 IPLE 357
           + L 
Sbjct: 333 LKLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 6/178 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           +++D+         E  +L +   +   ++T+       L +   +  L L+   +    
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                   ++  L +  N +    P    N+  L VL L  N LS L    F N   LTT
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 294 LYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L +  N++   I D+      SL N+ LS N+L     + L+ + + L    +S N +
Sbjct: 146 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPS-LFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 11/178 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           +    + +       + S + +  L L D  +      +      +  LY+  NA+   +
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YL 108

Query: 234 LNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
              +  N+  L  L L  N LS        N   L  L +S+N L  +   +F   T+L 
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            L +  N +   +  ++  + SL + N+S N L+     +L      +E +  S N I
Sbjct: 169 NLQLSSNRL-THV--DLSLIPSLFHANVSYNLLS-----TLAIPIA-VEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 3/168 (1%)

Query: 184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSL 243
            I   ++     +++ +   T           L N   +   ++ +       + + + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 244 YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
             L L    +             +  L +  N +  L P  F N+  LT L + +N +  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 130

Query: 304 SILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           S+   I  N   L+ +++S N L      +    T+ L+ + LSSN +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 9/162 (5%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N ++      + +   L  + L  N L   +      +  L  LY+ +N L  ++
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                 + +L  L+L+ N L   +         L  L L  N +  L          L  
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKN 343

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
           L +  N    + L  +   ++++   +     +  I   L +
Sbjct: 344 LTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.9 bits (223), Expect = 9e-20
 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 5/180 (2%)

Query: 190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI-GNLKSLYYLEL 248
           + L +   L L  N +      S   L  L  L L S     +I  E   NL +L  L+L
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLS--GLIPPSFGNLTNLTTLYVYKNSIFG-SI 305
            S+ +    P     L +L  L L    LS   L    F NL  LT L + KN I    +
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN-SLEVVCLSSNHIVGEIPLELRKHSSL 364
               G L SL +I+ S N++       L  L   +L    L++N +   + ++  K  + 
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.5 bits (209), Expect = 6e-18
 Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L L       +I  E  R+L +L  L LG + +    P +   L +L  L L    LS +
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 233 ILNE--IGNLKSLYYLELTSNTLSGSIPLP--LGNLTNLVVLELSDNKLSGLIPPSFGNL 288
           +L +    NLK+L  L+L+ N +  S+ L    G L +L  ++ S N++  +       L
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171

Query: 289 T--NLTTLYVYKNSIFGSILDEIGNL------KSLSNINLSLNKLNGSIPLSLTNLTNSL 340
               L+   +  NS++  +  + G          L  +++S N     I  + +N  +  
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 341 EVVCLSSNHIVGEIPLELRK 360
           +   L   H +         
Sbjct: 232 QAFSLILAHHIMGAGFGFHN 251

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.4 bits (201), Expect = 7e-17
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNL--TNLATLYLDSNALS 230
           +     NAIS S    +     +     G + +      +   L  +++  L L    + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
                    LK L  L L  N ++         L NL VL LS N L  L   +F  L  
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           +  + + KN I          L+ L  ++L  N L      ++  +  S+  + LS N +
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIP-SIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 48/212 (22%), Positives = 80/212 (37%), Gaps = 36/212 (16%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG---------------------SIPL 211
           L  LD+     + L  I  + S+ ++ L  N L                        I  
Sbjct: 364 LQTLDL---RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 212 SLGNLTNLATLYLDSNALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPL-----GNLT 265
            L  + +L  L L+ N  S    ++      SL  L L  N L  +    L       L+
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL 325
           +L VL L+ N L+ L P  F +LT L  L +  N +  ++L       +L  +++S N+L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQL 538

Query: 326 NGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE 357
               P    +L+     + ++ N  + E  L 
Sbjct: 539 LAPNPDVFVSLSV----LDITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 9e-14
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 26/206 (12%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L    +         +LK L  L L  N ++     +   L NL  L L  N L    
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
            +    L  + Y++L  N ++         L  L  L+L DN L+     +   + ++  
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPD 385

Query: 294 LYVYKNSI--------FGSILDEIGN-------------LKSLSNINLSLNKLNGSIPLS 332
           +++  N +          +++    N             +  L  + L+ N+ +      
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 333 LTNLTNSLEVVCLSSNHIVGEIPLEL 358
             +   SLE + L  N +      EL
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETEL 471

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 26/202 (12%)

Query: 174 LYLDINAISGSILDE--IRSLKSLFNLRLGDNTLSG-SIPLSLGNLTNLATLYLDSNALS 230
           L L    +S ++L +   R+LK+L  L L  N +    +  S G L +L ++   SN + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 231 GSILNEIGNL--KSLYYLELTSNTLSGSIPLPLGNLTN------LVVLELSDNKLSGLIP 282
               +E+  L  K+L +  L +N+L   + +  G   N      L +L++S N  +  I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 283 PSFGN------------LTNLTTLYVYKNSIFGSILDEIGNLK--SLSNINLSLNKLNGS 328
            +F N              ++       ++I     +    L   S+ +++LS   +   
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281

Query: 329 IPLSLTNLTNSLEVVCLSSNHI 350
                  L + L+V+ L+ N I
Sbjct: 282 NSRVFETLKD-LKVLNLAYNKI 302

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 4e-19
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 15/181 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           LY+  N +   I   +    SL  LR+ DN +          L N+  + +  N L  S 
Sbjct: 107 LYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 234 LNEI--GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
                   LK L YL ++   L+G   +P      L  L L  NK+  +        + L
Sbjct: 164 FEPGAFDGLK-LNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 292 TTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH 349
             L +  N I   +++   +  L +L  ++L  NKL+  +P  L +L   L+VV L +N+
Sbjct: 220 YRLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL-LQVVYLHTNN 275

Query: 350 I 350
           I
Sbjct: 276 I 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 9e-16
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 12/183 (6%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T LL L  N IS    D+ + L+ L+ L L +N +S     +   L  L  LY+  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL--SGLIPPSFGNL 288
             I   +    SL  L +  N +          L N+  +E+  N L  SG  P +F  L
Sbjct: 116 -EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSS 347
             L  L + +  +  + + +    ++L+ ++L  NK+  +I    L   +  L  + L  
Sbjct: 173 -KLNYLRISEAKL--TGIPK-DLPETLNELHLDHNKIQ-AIELEDLLRYSK-LYRLGLGH 226

Query: 348 NHI 350
           N I
Sbjct: 227 NQI 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSGS 232
           L +    ++  I  ++   ++L  L L  N +  +I    L   + L  L L  N +   
Sbjct: 177 LRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF------G 286
               +  L +L  L L +N LS  +P  L +L  L V+ L  N ++ +    F       
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 287 NLTNLTTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNK 324
                  + ++ N +    +       +     I     K
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL 277
           +L  +      L  ++  EI        L+L +N +S         L +L  L L +NK+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 278 SGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT 337
           S +   +F  L  L  LY+ KN +    +       SL  + +  N++        + L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHL--VEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 338 NSLEVVCLSSNHI 350
           N +  + +  N +
Sbjct: 148 N-MNCIEMGGNPL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 5e-19
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N ++  +  ++  + SLF+  +  N LS     +L     +  L    N+++  +
Sbjct: 176 LQLSSNRLT-HV--DLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VV 226

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                    L  L+L  N L+      L N   LV ++LS N+L  ++   F  +  L  
Sbjct: 227 --RGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           LY+  N +  ++      + +L  ++LS N L   +  +       LE + L  N I
Sbjct: 283 LYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.5 bits (201), Expect = 4e-17
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +    + +   +   +  S + +  L L D  +      +      +  LY+  NA+   
Sbjct: 56  VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-Y 113

Query: 233 ILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
           +   +  N+  L  L L  N LS        N   L  L +S+N L  +   +F   T+L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
             L +  N +   +  ++  + SL + N+S N L+     +L      +E +  S N I
Sbjct: 174 QNLQLSSNRL-THV--DLSLIPSLFHANVSYNLLS-----TLAIPIA-VEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 29/168 (17%), Positives = 61/168 (36%), Gaps = 3/168 (1%)

Query: 184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSL 243
            I   ++     +++ +   T           L N   +   ++ +       + + + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 244 YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
             L L    +             +  L +  N +  L P  F N+  LT L + +N +  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 136

Query: 304 SILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           S+   I  N   L+ +++S N L      +    T+ L+ + LSSN +
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.8 bits (168), Expect = 6e-13
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 14/192 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N ++      + +   L  + L  N L   +      +  L  LY+ +N L  ++
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                 + +L  L+L+ N L   +         L  L L  N +  L          L  
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKN 349

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           L +  N    + L  +   ++++   +     +  I   L +      + C  S+    +
Sbjct: 350 LTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH-----GLCCKESDKPYLD 402

Query: 354 IPLELRKHSSLV 365
             L+    +S+V
Sbjct: 403 RLLQYIALTSVV 414

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 9/109 (8%), Positives = 29/109 (26%), Gaps = 3/109 (2%)

Query: 243 LYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302
             Y           I   L        + +               L N   +    +++ 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM- 63

Query: 303 GSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
             +   +  + + +  +NL+  ++      +       ++ + +  N I
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGFNAI 111

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.4 bits (209), Expect = 1e-18
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS 256
            L L +N L      +L   T L  L LD   L+   L   G L  L  L+L+ N L  S
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-S 91

Query: 257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLK 313
           +PL    L  L VL++S N+L+ L   +   L  L  LY+  N   ++   +L     L+
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 314 SLSNINLSLNKLNGSIPLSL-TNLTNSLEVVCLSSNHI 350
            L   +L+ N L   +P  L   L N L+ + L  N +
Sbjct: 152 KL---SLANNNLT-ELPAGLLNGLEN-LDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 15/161 (9%)

Query: 194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL 253
           S   +      L+ ++P  L    +   L+L  N L    L  +     L  L L    L
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIG 310
           +  +    G L  L  L+LS N+L  L P     L  LT L V  N   S+    L  +G
Sbjct: 68  T-KLQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 311 NLKSLSNINLSLNKLNGSIPLSL-TNLTNSLEVVCLSSNHI 350
            L+ L    L  N+L  ++P  L T     LE + L++N++
Sbjct: 125 ELQELY---LKGNELK-TLPPGLLTPTPK-LEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 42/153 (27%), Positives = 56/153 (36%), Gaps = 34/153 (22%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN---ALS 230
           L LD   ++   L    +L  L  L L  N L  S+PL    L  L  L +  N   +L 
Sbjct: 60  LNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 231 GSILNEIGNLKSLY---------------------YLELTSNTLSGSIPLPLG---NLTN 266
              L  +G L+ LY                      L L +N L+    LP G    L N
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE---LPAGLLNGLEN 173

Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           L  L L +N L   IP  F     L   +++ N
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 239 NLKSLYYLELTSNTLSGSIP--LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV 296
            + S   +      L+ ++P  LP     +  +L LS+N L      +    T LT L +
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 297 YKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            +  +  + L   G L  L  ++LS N+L  S+PL    L   L V+ +S N +
Sbjct: 63  DRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRL 112

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 14/165 (8%)

Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
           +     L +     LG  +++  +      L+ +     D++ +    L  +    +L  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKE 67

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
           L L+ N +S  +  PL +LT L  L ++ N+L  L   +      L+ L++  N +    
Sbjct: 68  LHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL--RD 120

Query: 306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            D + +LK+L  +++  NKL  SI   L  L+  LEV+ L  N I
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSK-LEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+L  N IS   L  ++ L  L  L +  N L     L+      L+ L+LD+N L    
Sbjct: 68  LHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD-- 120

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
            + + +LK+L  L + +N L  SI   LG L+ L VL+L  N+++         L  +  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV 343
           + +         +     L   + +     +      +S         V+
Sbjct: 177 IDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L ++ N +    L+ I S   L  L L +N L  +  L   +L NL  L + +N L    
Sbjct: 90  LSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLKS-- 142

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  +G L  L  L+L  N ++ +    L  L  +  ++L+  K           L    T
Sbjct: 143 IVMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
           +              I N  S  +  +       +  +S   
Sbjct: 201 VKDPDGRWISPY--YISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 15/177 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
                  I    +    +        L   +++ ++  +   L ++  +  +++ +    
Sbjct: 7   TITVPTPIKQ--IFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI--KS 60

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  I  L ++  L L  N L+  I  PL NL NL  L L +NK+  L      +L  L +
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKS 116

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L +  N I  S ++ + +L  L ++ L  NK+     LS   LT  L+ + L  N I
Sbjct: 117 LSLEHNGI--SDINGLVHLPQLESLYLGNNKITDITVLS--RLTK-LDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 12/169 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+L+ N ++   +  + +LK+L  L L +N +   +  SL +L  L +L L+ N +S   
Sbjct: 73  LFLNGNKLTD--IKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS--D 126

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +N + +L  L  L L +N ++  I   L  LT L  L L DN++S +       LT L  
Sbjct: 127 INGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQN 182

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
           LY+ KN I  S L  +  LK+L  + L   +         +NL     V
Sbjct: 183 LYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 10/153 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L+ N IS   ++ +  L  L +L LG+N ++    LS   LT L TL L+ N +S   
Sbjct: 117 LSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISD-- 170

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
           +  +  L  L  L L+ N +S  +   L  L NL VLEL   +          NL    T
Sbjct: 171 IVPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           +     S+     + I +       N+  +   
Sbjct: 229 VKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 18/178 (10%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           L  LD +  S + +  I  L  L  L    N ++    L L   TNL  L  DSN L+ +
Sbjct: 44  LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-N 99

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           +  ++  L  L YL   +N L+    L +     L  L  + N L+ +      + T LT
Sbjct: 100 L--DVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLT 151

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            L  + N        ++     L+ ++ S NK+     L ++     L  +   +N+I
Sbjct: 152 ELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKL-LNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.5 bits (212), Expect = 2e-18
 Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 18/180 (10%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T L  LD +        ++     L  L    N ++    L +     L  L  D+N ++
Sbjct: 148 TQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT 204

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
             +  ++     L +L+ +SN L+    + +  LT L   + S N L+ L       L+ 
Sbjct: 205 -KL--DLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTEL---DVSTLSK 255

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           LTTL+  +  +    +D + +   L  I            L +T+ T  L ++   +  I
Sbjct: 256 LTTLHCIQTDL--LEID-LTHNTQL--IYFQAEGCRKIKELDVTHNTQ-LYLLDCQAAGI 309

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 21/177 (11%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L  D N ++   LD +  L  L  L    N L+    L +     L  L    N L+  I
Sbjct: 90  LACDSNKLTN--LD-VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EI 142

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
             ++ +   L  L+   N       L +   T L  L+ S NK++ L          L  
Sbjct: 143 --DVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNR 195

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L    N+I  + LD +     L+ ++ S NKL     + +T LT  L     S N +
Sbjct: 196 LNCDTNNI--TKLD-LNQNIQLTFLDCSSNKLTE---IDVTPLTQ-LTYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
               +N ++  +  ++ +L  L  L      L     + L + T L     +       +
Sbjct: 238 FDCSVNPLT-EL--DVSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIKEL 291

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
             ++ +   LY L+  +  ++    L L     LV L L++ +L+ L      + T L +
Sbjct: 292 --DVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKS 343

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
           L      I       +G + +L+N   +  +       +LTN + ++ V
Sbjct: 344 LSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
               ++ A      +++ +L S   L   +++++  +   +  LT L  L   SN ++ +
Sbjct: 25  AAAFEMQATDTISEEQLATLTS---LDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT-T 78

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT 292
           +  ++    +L YL   SN L+    L +  LT L  L    NKL+ L          LT
Sbjct: 79  L--DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKL---DVSQNPLLT 130

Query: 293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
            L   +N++  + +D + +   L+ ++  LNK    + ++    T  L  +  S N I
Sbjct: 131 YLNCARNTL--TEID-VSHNTQLTELDCHLNKKITKLDVT--PQTQ-LTTLDCSFNKI 182

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.1 bits (198), Expect = 1e-16
 Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 18/165 (10%)

Query: 192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN 251
             S                +S   L  L +L   +++++   +  I  L  L  L  TSN
Sbjct: 20  FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN 74

Query: 252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311
            ++    L L   TNL  L    NKL+ L       LT LT L    N +  + LD +  
Sbjct: 75  NITT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKL--TKLD-VSQ 125

Query: 312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL 356
              L+ +N + N L     + +++ T  L  +    N  + ++ +
Sbjct: 126 NPLLTYLNCARNTLT---EIDVSHNTQ-LTELDCHLNKKITKLDV 166

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 20/185 (10%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L    N ++  I  ++  L  L       N L+    L +  L+ L TL+     L   I
Sbjct: 217 LDCSSNKLT-EI--DVTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EI 269

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
             ++ +   L Y +           L + + T L +L+     ++ L          L  
Sbjct: 270 --DLTHNTQLIYFQAEGCRKIKE--LDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVY 322

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           LY+    +  + LD + +   L +++     +      S+  +   L     +    +  
Sbjct: 323 LYLNNTEL--TELD-VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPA-LNNNFEAEGQTITM 376

Query: 354 IPLEL 358
               L
Sbjct: 377 PKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T L+Y            ++     L+ L      ++    L L     L  LYL++  L+
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
             +  ++ +   L  L   +  +       +G +  L     ++ +   + P       +
Sbjct: 332 -EL--DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITM-PKETLTNNS 385

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           LT       ++   +LD+ GN  ++   +  +     +  ++  NL+     V  +    
Sbjct: 386 LT------IAVSPDLLDQFGNPMNIEPGDGGVYDQ-ATNTITWENLSTDNPAVTYTFTSE 438

Query: 351 VGEI 354
            G I
Sbjct: 439 NGAI 442

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 14/163 (8%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG---NLKSLYYLELTSNTL 253
           NL L  N L      S  +   L  L L    +  +I  E G   +L  L  L LT N +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI--EDGAYQSLSHLSTLILTGNPI 88

Query: 254 SGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GN 311
             S+ L     L++L  L   +  L+ L     G+L  L  L V  N I    L E   N
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 312 LKSLSNINLSLNKLNGSIPL----SLTNLTNSLEVVCLSSNHI 350
           L +L +++LS NK+  SI       L  +      + LS N +
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM 189

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 18/161 (11%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSG 231
           L L  N I  S+       L SL  L   +  L+ S+    +G+L  L  L +  N +  
Sbjct: 81  LILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPL----PLGNLTNLVV-LELSDNKLSGLIPPSF 285
             L E   NL +L +L+L+SN +  SI       L  +  L + L+LS N ++ + P +F
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 286 GNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLN 323
             +  L  L +  N   S+   I D    L SL  I L  N
Sbjct: 198 KEI-RLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE--IGNLKSLSNINLSL 322
            +   L+LS N L  L   SF +   L  L + +  I    +++    +L  LS + L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG 85

Query: 323 NKLNGSIPLSL-TNLTNSLEVVCLSSNHI 350
           N +  S+ L   + L++ L+ +     ++
Sbjct: 86  NPIQ-SLALGAFSGLSS-LQKLVAVETNL 112

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.9 bits (203), Expect = 4e-18
 Identities = 54/186 (29%), Positives = 78/186 (41%), Gaps = 17/186 (9%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNAL 229
           T  L L  N +S         L  L  L L DN L  ++P  +   L NL TL++  N L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 230 SGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSF 285
             ++   +   L +L  L L  N L     LP     +LT L  L L  N+L  L    F
Sbjct: 98  Q-ALPIGVFDQLVNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 286 GNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
             LT+L  L +Y N    +     D++  LK+L    L  N+L   +P    +    L++
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL---KLDNNQLK-RVPEGAFDSLEKLKM 209

Query: 343 VCLSSN 348
           + L  N
Sbjct: 210 LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
            +   L L SN LS         L  L  L L  N L     LP G    L NL  L ++
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVT 93

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330
           DNKL  L    F  L NL  L + +N   S+   + D +  L  L   +L  N+L  S+P
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL---SLGYNELQ-SLP 149

Query: 331 LSL-TNLTNSLEVVCLSSNHI 350
             +   LT+ L+ + L +N +
Sbjct: 150 KGVFDKLTS-LKELRLYNNQL 169

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 47/209 (22%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +    +  +             L  L +  N L+ S+P+    L  L    +  N L+ S
Sbjct: 108 IFSNPLTHLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-S 155

Query: 233 ILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT--- 289
           +      L  L+     +N L+ S+P+    L  L    +SDN+L+ L P     L    
Sbjct: 156 LPALPSELCKLW---AYNNQLT-SLPMLPSGLQEL---SVSDNQLASL-PTLPSELYKLW 207

Query: 290 --------------NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
                          L  L V  N +  S+      LK L    +S N+L  S+P+  + 
Sbjct: 208 AYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLPSELKEL---MVSGNRLT-SLPMLPSG 262

Query: 336 LTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
           L  SL    +  N +   +P  L   SS 
Sbjct: 263 LL-SLS---VYRNQLT-RLPESLIHLSSE 286

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 39/204 (19%), Positives = 81/204 (39%), Gaps = 29/204 (14%)

Query: 159 SDSMEEAHVTWPTWLLYLDINAISG--SILDEIRS--LKSLFNLRLGDNTLSGSIPLSLG 214
                E    W  W          G  +++ ++R+        L +G++ L+ ++P  L 
Sbjct: 2   PVDPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP 60

Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD 274
              ++ TL +  N L+ S+      L++L    ++ N L+ S+P+    L  L +     
Sbjct: 61  --AHITTLVIPDNNLT-SLPALPPELRTLE---VSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 275 NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLT 334
             L  L        + L  L+++ N +  S+      L+ L   ++S N+L  S+P   +
Sbjct: 114 THLPAL-------PSGLCKLWIFGNQL-TSLPVLPPGLQEL---SVSDNQLA-SLPALPS 161

Query: 335 NLTNSLEVVCLSSNHIVGEIPLEL 358
            L      +   +N +   +P+  
Sbjct: 162 ELCK----LWAYNNQLT-SLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 31/189 (16%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+   N ++ S+      L+ L    + DN L+ S+P     L  L   +  +N L+ S+
Sbjct: 166 LWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLPSELYKL---WAYNNRLT-SL 216

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT-----------------NLVVLELSDNK 276
                 LK L    ++ N L+ S+P+    L                   L+ L +  N+
Sbjct: 217 PALPSGLKELI---VSGNRLT-SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ 272

Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNL 336
           L+ L P S  +L++ TT+ +  N +    L  +  + S    +  + + + +   +    
Sbjct: 273 LTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 337 TNSLEVVCL 345
                    
Sbjct: 332 RALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 27/184 (14%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+   N ++ S+      LK L    +  N L+ S+P+    L  L    +  N L+ S+
Sbjct: 206 LWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLPSELKEL---MVSGNRLT-SL 256

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                 L SL    +  N L+  +P  L +L++   + L  N LS     +   +T+   
Sbjct: 257 PMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA-- 310

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
                           G +        S  +   ++ L+  +          +       
Sbjct: 311 ------------PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

Query: 354 IPLE 357
              E
Sbjct: 359 FGQE 362

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 7e-17
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 166 HVTWPTWLLYLDINAISGSILDEIR-------SLKSLFNLRLGDNTLSGSIPLSLGNLTN 218
            + W T + Y  I+ +      + R       SLK+L   ++  +             +N
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
           +       +      +     +    +L+ ++N L+ ++    G+LT L  L L  N+L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 279 GLIPPS--FGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTN 335
            L   +     + +L  L + +NS+            KSL ++N+S N L  +I      
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RC 418

Query: 336 LTNSLEVVCLSSNHI 350
           L   ++V+ L SN I
Sbjct: 419 LPPRIKVLDLHSNKI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252
           +    L +  N +S      + +L+ L  L +  N +    ++     + L YL+L+ N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 253 LSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311
           L     +      NL  L+LS N    L I   FGN++ L  L +    +  S +  I +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 312 LKSLSN-INLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355
           L      + L         P  L +       +   +N     I 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
           +    ++      +     +    +L   +N L+ ++  + G+LT L TL L  N L   
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-E 362

Query: 233 ILNEIG---NLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
           +         +KSL  L+++ N++S            +L+ L +S N L+  I       
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--P 420

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL-SLTNLTNSLEVVCLSS 347
             +  L ++ N I  SI  ++  L++L  +N++ N+L  S+P      LT SL+ + L +
Sbjct: 421 PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT-SLQKIWLHT 477

Query: 348 N 348
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 4/145 (2%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
                L +  N +S    ++I +L  L  L ++ N +             L  L+LS NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 277 LSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLSNINLSLNKLNGSIPLSLTN 335
           L  +   S     NL  L +  N+     I  E GN+  L  + LS   L  S  L + +
Sbjct: 81  LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 336 LTNSLEVVCLSSNHIVGEIPLELRK 360
           L  S  ++ L   +   E P  L+ 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQD 162

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
           T +L +  N IS     +I SL  L  L +  N +             L  L L  N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLP--LGNLTNLVVLELSDNKLSGLIPPSFGNL 288
                      +L +L+L+ N    ++P+    GN++ L  L LS   L         +L
Sbjct: 83  KIS---CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNS 339
                L V   +       +   L+  +  +L +          + +++  
Sbjct: 139 NISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 15/188 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS--LGNLTNLATLYLDSNALSG 231
           L L  N +            +L +L L  N    ++P+    GN++ L  L L +  L  
Sbjct: 74  LDLSHNKLVKISCH---PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIP---LPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
           S +  I +L     L +   T         L   N  +L ++  ++ +   ++  S   +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 289 TNLTTLYVYKNSI------FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
            NL    +           F SIL ++     LSN+ L+  +   +  + +  L     V
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 343 VCLSSNHI 350
              S +++
Sbjct: 250 WYFSISNV 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 9e-17
 Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 44/226 (19%)

Query: 163 EEAHVTWPTW----LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN 218
            +    W  W    L   + N    S+L E   +     L+L    LS S+P +L     
Sbjct: 27  ADYFSAWDKWEKQALPGENRNEAV-SLLKECL-INQFSELQLNRLNLS-SLPDNLP--PQ 81

Query: 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT------------- 265
           +  L +  NAL  S+     +L+   YL+   N LS ++P    +L              
Sbjct: 82  ITVLEITQNALI-SLPELPASLE---YLDACDNRLS-TLPELPASLKHLDVDNNQLTMLP 136

Query: 266 ----NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLS 321
                L  +   +N+L+ L P      T+L  L V  N +   + +   +L++L   ++S
Sbjct: 137 ELPALLEYINADNNQLTML-PEL---PTSLEVLSVRNNQL-TFLPELPESLEAL---DVS 188

Query: 322 LNKLNGSIPLSLTNLTNSLEVVC---LSSNHIVGEIPLELRKHSSL 364
            N L  S+P       +S E         N I   IP  +      
Sbjct: 189 TNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.5 bits (167), Expect = 9e-13
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           +  D N ++  + +   SL+ L    + +N L+  +P    +L     L + +N L  S+
Sbjct: 145 INADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPELPESLE---ALDVSTNLLE-SL 195

Query: 234 LNEIGNLKSL----YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
                          +     N ++  IP  + +L     + L DN LS  I  S    T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLE 341
                +     I+ S+ D   N       +        +    ++ + ++ E
Sbjct: 255 AQPDYHG--PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSG---SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL 264
           SI L + N  +L+      N +SG      +     +         N       L    +
Sbjct: 2   SIMLPINNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSL--LKECLI 58

Query: 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK 324
                L+L+   LS L P +      +T L + +N++  S+ +   +L+ L   +   N+
Sbjct: 59  NQFSELQLNRLNLSSL-PDNLP--PQITVLEITQNAL-ISLPELPASLEYL---DACDNR 111

Query: 325 LNGSIPLSLTNLTNSLEVVCLSSNHI 350
           L+ ++P    +L + L+   + +N +
Sbjct: 112 LS-TLPELPASLKH-LD---VDNNQL 132

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 42/199 (21%), Positives = 72/199 (36%), Gaps = 21/199 (10%)

Query: 170 PTWL--LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDS 226
           P  +  + L +N+I+         L+ L  L++   T    I   +   L++L  L LD 
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 227 NALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIP 282
           N     +       L +L  L LT   L     L       LT+L +L L DN +  + P
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 283 -PSFGNLTNLTTLYVYKNSI----------FGSILDEIGNLKSLSNINLSLNKLNGSIPL 331
              F N+     L +  N +          F      +  L S++  +++   L      
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 332 SLTNLTNSLEVVCLSSNHI 350
           +    T+ +  + LS N  
Sbjct: 207 NPFKNTS-ITTLDLSGNGF 224

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 45/179 (25%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 194 SLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252
            +    L  + +  ++  S+  + T+L  L L  N ++    N    L  L  L L+ N 
Sbjct: 276 GVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 253 LSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSIL 306
           L     +      NL  L VL+LS N +  L   SF  L NL  L +  N   S+   I 
Sbjct: 335 LGS---IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 307 DEIGNLKSLSNINLSLNKLN---GSIP-----LSLTNLTNSLEVVCLSSNHIVGEIPLE 357
           D    L SL  I L  N  +     I      L+  +        C  S   V  I   
Sbjct: 392 D---RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 447

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 26/186 (13%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP---LSLGNLTNLATLYLDSNAL 229
           L  ++   +            S+  L L  N    S+          T + +L L ++  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 230 SGSIL--NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGN 287
            GS        +  +  +  L +              + +   +LS +K+  L+   F +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEA--------------SGVKTCDLSKSKIFALLKSVFSH 297

Query: 288 LTNLTTLYVYKNSIFGSILDE--IGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVC 344
            T+L  L + +N I  + +D+     L  L  +NLS N L GSI      NL   LEV+ 
Sbjct: 298 FTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDK-LEVLD 353

Query: 345 LSSNHI 350
           LS NHI
Sbjct: 354 LSYNHI 359

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 42/230 (18%), Positives = 68/230 (29%), Gaps = 54/230 (23%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYLDSNALSG 231
           L ++       I +   R L SL  L+L  N     +       L NL  L L    L G
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDG 117

Query: 232 SILNE--IGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSDNK------------ 276
           ++L+      L SL  L L  N +    P     N+    VL+L+ NK            
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 277 ----------------------LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKS 314
                                 L      +    T++TTL +  N    S+     +  +
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 315 LSNI-------------NLSLNKLNGSIPLSLTNLT-NSLEVVCLSSNHI 350
            + I             +            +   L  + ++   LS + I
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 13/191 (6%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD-SNALSG 231
           +    I +        +  +  L  L L +  ++G+ P  L   T      L+  N    
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 232 SILNEIGNLKSLYYLELTSNTLSG----SIPLPL-GNLTNLVVLELSDNKLSGLIPPS-- 284
           +    +  L+      L   +++     +           L  L+LSDN   G       
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 285 --FGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNS 339
                   L  L +      +  G           L  ++LS N L  +      +  + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 340 LEVVCLSSNHI 350
           L  + LS   +
Sbjct: 255 LNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 174 LYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIP----LSLGNLTNLATLYLDSN 227
           L L+   ++G+    +   +   L  L L + + +        L       L  L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP----LGNLTNLVVLELSDNK---LSGL 280
                   ++    +L  L+L+ N   G   L           L VL L +      SG+
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 281 IPPSFGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNS 339
                     L  L +  NS+  +           L+++NLS   L   +P     L   
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP---KGLPAK 275

Query: 340 LEVVCLSSNHI 350
           L V+ LS N +
Sbjct: 276 LSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 18/207 (8%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP---LSLGNLTNLATLYLDSNAL 229
           L  +D  A  G   D I+SL SL  L +    +   I    L +  ++ L  L L++  +
Sbjct: 49  LKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 230 SGSILNEIGNL--KSLYYLELTSNTLSGSIP----LPLGNLTNLVVLELSDNKLSGLIPP 283
           +G+    +       L  L L + + +        L       L VL ++          
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 284 SFGNLTNLTTLYVYKNSIFGSI-------LDEIGNLKSLSNINLSLNKLNGSIPLSLTNL 336
                  L+TL +  N   G           +   L+ L+  N  +   +G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 337 TNSLEVVCLSSNHIVGEIPLELRKHSS 363
              L+ + LS N +            S
Sbjct: 228 VQ-LQGLDLSHNSLRDAAGAPSCDWPS 253

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS----LGNLTNLATLYLDSN-- 227
           L +          +++R   +L  L L DN   G   L           L  L L +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 228 -ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSDNKLSGLIPPSF 285
              SG           L  L+L+ N+L  +   P     + L  L LS   L  +     
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL 325
                L+ L +  N +          L  + N++L  N  
Sbjct: 274 ---AKLSVLDLSYNRL--DRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 32/133 (24%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGS 232
               +   IS     +  +L+ L     G  T SG           L  L L  N+L  +
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 233 ILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
                      L  L L+   L     +P G    L VL+LS N+L     PS   L  +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLDRN--PSPDELPQV 298

Query: 292 TTLYVYKNSIFGS 304
             L +  N    S
Sbjct: 299 GNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 15/194 (7%)

Query: 170 PTWLLYLD-INAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228
           P W    + + A    +    RSL+ L      D          +    +L  L + +  
Sbjct: 22  PDWSSAFNCLGAADVELYGGGRSLEYLLKRV--DTEADLGQFTDIIKSLSLKRLTVRAAR 79

Query: 229 LSGSILN---EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF 285
           +   IL     +  +  L  L L +  ++G+ P PL   T   +  L+   +S     ++
Sbjct: 80  IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 286 GN------LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN- 338
                      L  L + +        +++    +LS ++LS N   G   L        
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 339 --SLEVVCLSSNHI 350
             +L+V+ L +  +
Sbjct: 200 FPTLQVLALRNAGM 213

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSG 231
           L L  N +S ++     + L SL  L L  N        SL  +LT L  L + +     
Sbjct: 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 232 SILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
            I  +    L  L  LE+ ++ L    P  L ++ N+  L L   +   L+       ++
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 291 LTTLYVYKNSIFGSILDEI--------GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
           +  L +    +      E+            +  N+ ++   L   +   L  ++  L  
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG-LLE 281

Query: 343 VCLSSNHI 350
           +  S N +
Sbjct: 282 LEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 9e-15
 Identities = 35/186 (18%), Positives = 72/186 (38%), Gaps = 14/186 (7%)

Query: 174 LYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDSNALS 230
           L L  N    ++ +      L  L  LR+G+      I       LT L  L +D++ L 
Sbjct: 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL----IPP--- 283
                 + +++++ +L L        + + +   +++  LEL D  L       +     
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 284 -SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
            S         + +   S+F  ++  +  +  L  +  S N+L  S+P  + +   SL+ 
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305

Query: 343 VCLSSN 348
           + L +N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI-GNLKSLYYLELT 249
            L  L  L +  + L    P SL ++ N++ L L        +L        S+  LEL 
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELR 230

Query: 250 SNTLSG----SIP----LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN-- 299
              L       +       L        ++++D  L   +      ++ L  L   +N  
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQL 289

Query: 300 -SIFGSILDEIGNLKSLSNINLSLNKLN 326
            S+   I D    L SL  I L  N  +
Sbjct: 290 KSVPDGIFD---RLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTN 266
           SIP  L     + +L L +N ++    +++    +L  L LTSN ++ +I      +L +
Sbjct: 45  SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI--GNLKSLSNINLSLNK 324
           L  L+LS N LS L    F  L++LT L +  N    ++ +     +L  L  + +    
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMD 160

Query: 325 LNGSIPL-SLTNLTNSLEVVCLSSNHI 350
               I       LT  LE + + ++ +
Sbjct: 161 TFTKIQRKDFAGLTF-LEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 7/153 (4%)

Query: 209 IPLSLGNLTNLATLYLDSNA---LSGSILNEI--GNLKSLYYLELTSNTLSGSIPLPLGN 263
           I LS    +N A+L  D N     S   LN I  G  +++  L+L++N ++      L  
Sbjct: 15  ISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQR 74

Query: 264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSL 322
             NL  L L+ N ++ +   SF +L +L  L +  N +  ++       L SL+ +NL  
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLG 133

Query: 323 NKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP 355
           N        SL +    L+++ + +     +I 
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSG----SIP----LSLGNLTNLATLYL 224
           L L +      +L+       S+  L L D  L       +      SL        + +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKL 277
              +L   ++  +  +  L  LE + N L     +P G    LT+L  + L  N  
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKS---VPDGIFDRLTSLQKIWLHTNPW 313

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 55/182 (30%), Positives = 73/182 (40%), Gaps = 25/182 (13%)

Query: 170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG---NLTNLATLYLDS 226
              +  +  N      +  I+ L ++  L LG N L       +     LTNL  L L  
Sbjct: 40  LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTG 94

Query: 227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPP 283
           N L          L +L  L L  N L     LP G    LTNL  L L+ N+L  L   
Sbjct: 95  NQLQSLPNGVFDKLTNLKELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQLQSLPKG 151

Query: 284 SFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIPL----SLTNL 336
            F  LTNLT L +  N   S+   + D++  LK L    L  N+L  S+P      LT+L
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR---LYQNQLK-SVPDGVFDRLTSL 207

Query: 337 TN 338
             
Sbjct: 208 QY 209

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 53/160 (33%), Positives = 71/160 (44%), Gaps = 22/160 (13%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSN---AL 229
           L L  N +    +  ++ L +L  L L  N L  S+P  +   LTNL  L L  N   +L
Sbjct: 68  LALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL 124

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFG 286
              + +++ NL  L    L  N L     LP G    LTNL  L+LS N+L  L    F 
Sbjct: 125 PDGVFDKLTNLTYLN---LAHNQLQS---LPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178

Query: 287 NLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLN 323
            LT L  L +Y+N   S+   + D    L SL  I L  N
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFD---RLTSLQYIWLHDN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 48/158 (30%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNAL 229
           T  L L    ++       R L  L  L L  N L  ++   +  +LT L TL L +N L
Sbjct: 37  TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL 95

Query: 230 SGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSF 285
           + S+   +  +L  L  L L  N L     LP G    LT L  L L+ N+L  +   +F
Sbjct: 96  A-SLPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151

Query: 286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLN 323
             LTNL TL +  N +          L  L  I L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
            +   L L S  L+         L  L +L L  N L     L  G   +LT L  L L+
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT---LSAGVFDDLTELGTLGLA 91

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330
           +N+L+ L    F +LT L  LY+  N   S+   + D +  LK L    L+ N+L  SIP
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL---RLNTNQLQ-SIP 147

Query: 331 L----SLTNLT 337
                 LTNL 
Sbjct: 148 AGAFDKLTNLQ 158

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIF 302
           L+L S  L+         LT L  L L  N+L  L    F +LT L TL +  N   S+ 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 303 GSILDEIGNLKSLSNINLSLNKLNGSIPL----SLTNLTNSLEVVCLSSNHI 350
             + D +  L  L    L  N+L  S+P      LT L   L    L++N +
Sbjct: 100 LGVFDHLTQLDKL---YLGGNQLK-SLPSGVFDRLTKLKE-LR---LNTNQL 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLS 316
           P G   +   L+L    L+ L   +F  LT LT L +  N   ++   + D++  L +L 
Sbjct: 30  PSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89

Query: 317 NINLSLNKLNGSIPLSLTNLTN 338
             N  L  L   +   LT L  
Sbjct: 90  LANNQLASLPLGVFDHLTQLDK 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 197 NLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEIG---NLKSLYYLELTSNT 252
            LRL +N  +      +   L  L  +   +N ++  I  E G       +  + LTSN 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DI--EEGAFEGASGVNEILLTSNR 92

Query: 253 LSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSIL 306
           L     +       L +L  L L  N+++ +   SF  L+++  L +Y N   ++     
Sbjct: 93  LEN---VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 307 DEIGNLKSLSNINLSLN 323
           D    L SLS +NL  N
Sbjct: 150 D---TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 265 TNLVVLELSDNKLSGLIPP-SFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINL 320
                L L++N+ + L     F  L  L  +    N    I     +    +  +    L
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI---LL 88

Query: 321 SLNKLNGSIPLSL-TNLTNSLEVVCLSSNHI 350
           + N+L  ++   +   L + L+ + L SN I
Sbjct: 89  TSNRLE-NVQHKMFKGLES-LKTLMLRSNRI 117

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 12/190 (6%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFN-----LRLGDNTLSGSIPL-----SLGNLTNLATL 222
           LL + +  I  +    ++  +  +      L + + T++  I       S   L +L   
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIP 282
           ++ +     S          +    L+ +       +   + ++   L  + N  +  + 
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 283 PSFGNLTNLTTLYVYKNSI--FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSL 340
                L  L TL + +N +  F  +     N+ SL  +++SLN LN            S+
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 341 EVVCLSSNHI 350
            V+ LSSN +
Sbjct: 431 LVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 41/196 (20%), Positives = 67/196 (34%), Gaps = 15/196 (7%)

Query: 166 HVTWPTWLLYLDI--NAISGSILDEI-----RSLKSLFNLRLGDNTLSGSIPLSLGNLTN 218
              WP  + YL+I    I+  I  E       +LKSL    + +     S          
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS 278
           +    L  +      +    +  S  +L  T N  + S+      L  L  L L  N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 279 GLIPPSFGNLTNLTTLYVYKNSI----FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLT 334
                      N+++L     S+      +        +S+  +NLS N L GS+     
Sbjct: 391 NF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC-- 447

Query: 335 NLTNSLEVVCLSSNHI 350
            L   ++V+ L +N I
Sbjct: 448 -LPPKVKVLDLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 10/155 (6%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL---- 229
           L    N  + S+     +LK L  L L  N L  +         N+++L     +L    
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
           S +        +S+  L L+SN L+GS+   L     + VL+L +N++  + P    +L 
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSI-PKDVTHLQ 473

Query: 290 NLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLN 323
            L  L V  N +  S+ D +   L SL  I L  N
Sbjct: 474 ALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.4 bits (162), Expect = 4e-12
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 11/181 (6%)

Query: 173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS-- 230
           +  L I+      +    S  S   L    N  + S+      L  L TL L  N L   
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 231 GSILNEIGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT 289
             +     N+ SL  L+++ N+L S +         +++VL LS N L+G +   F  L 
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLP 449

Query: 290 -NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL-SLTNLTNSLEVVCLSS 347
             +  L ++ N I  SI  ++ +L++L  +N++ N+L  S+P      LT SL+ + L  
Sbjct: 450 PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT-SLQYIWLHD 506

Query: 348 N 348
           N
Sbjct: 507 N 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 9/157 (5%)

Query: 148 FHVLDFPHTAYSDSMEEAHVTWP-TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTL- 205
           F  L+F    ++DS+ +   T      L L  N +  +        K++ +L   D +L 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN 413

Query: 206 ---SGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG 262
              S +   +     ++  L L SN L+GS+   +     +  L+L +N +  SIP  + 
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVT 470

Query: 263 NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           +L  L  L ++ N+L  +    F  LT+L  ++++ N
Sbjct: 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 3e-10
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 12/154 (7%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
                L L  N++S   + +I  L  L  L L+ N +     L         +L  L++S
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS---LDFHVFLFNQDLEYLDVS 108

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI--LDEIGNLKSLSNINLSLNKLNGSIPL 331
            N+L  +   S   + +L  L +  N  F  +    E GNL  L+ + LS  K      L
Sbjct: 109 HNRLQNI---SCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 332 SLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV 365
            + +L  S  ++ L S HI G     L+  ++ V
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 13/192 (6%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSL--FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228
             L++   +  S  +   + +L  L   N++L D      +            L +    
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 229 LSGSILNEIGNLKSLY-----YLELTSNTLSGSIPLPLGN-----LTNLVVLELSDNKLS 278
           +  +    +   +  +     YL + + T++  I           L +L++  + +    
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 279 GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN 338
                 +     +    +  +      +    +  S + +N + N    S+    + L  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 339 SLEVVCLSSNHI 350
            L+ + L  N +
Sbjct: 379 -LQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 11/167 (6%)

Query: 192 LKSLFNLRLGDNTLSGSIPLS--LGNLTNLATLYLDSNALSGSILNEIGNLK-SLYYLEL 248
           + SL +L L  N     +P+    GNLT L  L L +       L  + +L  S   L+L
Sbjct: 120 MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308
            S  + G     L    N  VL L  +  S        ++  L  L +    +       
Sbjct: 179 VSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 309 IGNL-----KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           +        +  + +N++L  +  +       L        +   +I
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWK-CSVKLFQFFWPRPVEYLNI 283

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLS 316
           P         L LS N +S L  P    L+ L  L +  N   S+   +     +L+ L 
Sbjct: 47  PKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL- 105

Query: 317 NINLSLNKLNGSIPLS-LTNLTN 338
             ++S N+L  +I    + +L +
Sbjct: 106 --DVSHNRL-QNISCCPMASLRH 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 2e-14
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 16/163 (9%)

Query: 171 TWLLYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSN 227
           T LL L  N +S  +  E     L +L +L L  N L+  I   +   + NL  L L SN
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 228 ALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPP 283
            L  ++   +  +L++L  L L +N +     +      ++  L  L LS N++S     
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVV---VDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 284 SFGN---LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLN 323
              +   L  L  L +  N +    L ++  L +     L L+
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 17/144 (11%)

Query: 217 TNLATLYLDSNALSGSILNEI--GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLE 271
           +  A L L  N LS  +  E     L +L+ L L+ N L+    +       + NL  L+
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLD 94

Query: 272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIP 330
           LS N L  L    F +L  L  L +Y N I   +      ++  L  + LS N+++   P
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 331 ----LSLTNLTNSLEVVCLSSNHI 350
                    L   L ++ LSSN +
Sbjct: 153 VELIKDGNKLP-KLMLLDLSSNKL 175

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 4e-14
 Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 11/147 (7%)

Query: 185 ILDEIRSLKSLFNLRLGDNTLSGSI-----PLSLGNLTNLATLYLDSNALSGSILNEIGN 239
            L    +LK++  +R        S       +      ++  L+L    L+  +L  +  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQ 461

Query: 240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           L  + +L+L+ N L  ++P  L  L  L VL+ SDN L  +      NL  L  L +  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

Query: 300 SIFG-SILDEIGNLKSLSNINLSLNKL 325
            +   + +  + +   L  +NL  N L
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 8/176 (4%)

Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
           L  I  +++L  L     TL     L   +    A L    +               +  
Sbjct: 386 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
           L L    L+  +   L  L  +  L+LS N+L   +PP+   L  L  L    N++    
Sbjct: 446 LHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL--EN 500

Query: 306 LDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK 360
           +D + NL  L  + L  N+L   +    L +    L ++ L  N +  +      +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLC-QEEGIQER 554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
            ++  LYLD N  +  +  E+ N K L  ++L++N +S    L      N+T L+ L LS
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNMTQLLTLILS 86

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLN 323
            N+L  + P +F  L +L  L ++ N    +     +   +L +LS++ +  N
Sbjct: 87  YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 31/132 (23%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS 230
              LYLD N  +  +  E+ + K L  + L +N +S     S  N+T L TL L  N   
Sbjct: 33  VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN--- 88

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGN 287
                            L          +P      L +L +L L  N +S +   +F +
Sbjct: 89  ----------------RLRC--------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124

Query: 288 LTNLTTLYVYKN 299
           L+ L+ L +  N
Sbjct: 125 LSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIF 302
           L L  N  +  +P  L N  +L +++LS+N++S L   SF N+T L TL +  N    I 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 303 GSILDEIGNLKSLSNINLSLNKLNGSIPL----SLTNLTN 338
               D + +L+ LS   L  N ++  +P      L+ L++
Sbjct: 95  PRTFDGLKSLRLLS---LHGNDIS-VVPEGAFNDLSALSH 130

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 9/187 (4%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDSNAL 229
           T  L L    +         +L ++  + +  +     +   S  NL+ +  + + +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 230 SGSILNEI-GNLKSLYYLELTSNTLSGSIPLP--LGNLTNLVVLELSDNKLSGLIPP-SF 285
              I  +    L  L +L + +  L    P    + +     +LE++DN     IP  +F
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 286 GNLTNLT-TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVV 343
             L N T TL +Y N    S+     N   L  + L+ NK    I   +   + +   ++
Sbjct: 152 QGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 344 CLSSNHI 350
            +S   +
Sbjct: 211 DVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 174 LYLDINAISGSILDE--IRSLKSLFNLRLGDNTLSGSIPL-SLGNLTN-LATLYLDSNAL 229
           L +    +     D   + S    F L + DN    SIP+ +   L N   TL L +N  
Sbjct: 110 LGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPL--GNLTNLVVLELSDNKLSGLIPPSFGN 287
           + S+     N   L  + L  N     I      G  +   +L++S   ++ L      +
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

Query: 288 LTNLTTLYVY 297
           L  L     +
Sbjct: 228 LKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
             +T   +   IP       +   L+L +  L  +   +F NL N++ +YV  +     +
Sbjct: 16  FRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 306 LDEI-GNLKSLSNINLSLNKLNGSIPLS-LTNLTNSLEVVCLSSNHI 350
                 NL  +++I +   +    I    L  L   L+ + + +  +
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFLGIFNTGL 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSN---ALSGSILNEIGNLKSLYYLELTSNTL 253
            L L  N+L          LT+L  LYL  N   +L   + N++ +L  L    L++N L
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN---LSTNQL 88

Query: 254 SGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILD 307
                LP G    LT L  L L+ N+L  L    F  LT L  L +Y+N   S+   + D
Sbjct: 89  QS---LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 308 EIGNLKSLSNINLSLN 323
               L SL  I L  N
Sbjct: 146 ---RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.5 bits (147), Expect = 6e-11
 Identities = 42/132 (31%), Positives = 55/132 (41%), Gaps = 17/132 (12%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
                L L++N+L          L SL  L L  N L     LP G    LT+L  L LS
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLS 84

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330
            N+L  L    F  LT L  L +  N   S+   + D++  LK L    L  N+L  S+P
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR---LYQNQLK-SVP 140

Query: 331 L----SLTNLTN 338
                 LT+L  
Sbjct: 141 DGVFDRLTSLQY 152

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF---GSILDEIGNLKSLS 316
           P G       L+L  N L  L    F  LT+LT LY+  N +      + +++ +L  L 
Sbjct: 23  PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL- 81

Query: 317 NINLSLNKLNGSIPL----SLTNLT 337
             NLS N+L  S+P      LT L 
Sbjct: 82  --NLSTNQLQ-SLPNGVFDKLTQLK 103

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 10/134 (7%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDSNAL 229
              + L+ N I           K L  + L +N +S  +   +   L +L +L L  N +
Sbjct: 34  ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 230 SGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSF 285
           +  +   +   L SL  L L +N ++    L +    +L NL +L L DNKL  +   +F
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKINC---LRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 286 GNLTNLTTLYVYKN 299
             L  + T+++ +N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
           + L  NT+    P        L  ++LS+N++S L P +F  L +L +L +Y N I   +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TEL 95

Query: 306 LDEI-GNLKSLSNINLSLNKLNGSIPL-SLTNLTNSLEVVCLSSNHI 350
              +   L SL  + L+ NK+N  + + +  +L N L ++ L  N +
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN-LNLLSLYDNKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLS 321
             +  + L  N +  + P +F     L  + +  N    +       + +L SL    L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL---VLY 88

Query: 322 LNKLNGSIPLSL-TNLTNSLEVVCLSSNHI 350
            NK+   +P SL   L + L+++ L++N I
Sbjct: 89  GNKIT-ELPKSLFEGLFS-LQLLLLNANKI 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 9/133 (6%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSN-- 227
             +LYL  N I+        SL +L  L LG N L  ++P+ +  +LT L  L L +N  
Sbjct: 42  AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL 100

Query: 228 -ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFG 286
             L  ++ + + +LK L+   +  N L+  +P  +  LT+L  L L  N+L  +   +F 
Sbjct: 101 TVLPSAVFDRLVHLKELF---MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 287 NLTNLTTLYVYKN 299
            L++LT  Y++ N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVLELS 273
           TN   LYL  N ++        +L +L  L L SN L     LP+G   +LT L VL+L 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA---LPVGVFDSLTQLTVLDLG 96

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL-- 331
            N+L+ L    F  L +L  L++  N     +   I  L  L+++ L  N+L  SIP   
Sbjct: 97  TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLK-SIPHGA 154

Query: 332 --SLTNLTN 338
              L++LT+
Sbjct: 155 FDRLSSLTH 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 245 YLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SI 301
            L L  N ++   P    +L NL  L L  N+L  L    F +LT LT L +  N    +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
             ++ D + +LK L    +  NKL   +P  +  LT+ L  + L  N
Sbjct: 104 PSAVFDRLVHLKEL---FMCCNKLT-ELPRGIERLTH-LTHLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLS 316
           P G  TN  +L L DN+++ L P  F +L NL  LY+  N   ++   + D +  L  L 
Sbjct: 35  PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL- 93

Query: 317 NINLSLNKLNGSIPL----SLTNLT 337
             +L  N+L   +P      L +L 
Sbjct: 94  --DLGTNQLT-VLPSAVFDRLVHLK 115

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 11/187 (5%)

Query: 171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS-LGNLTNLATLYL-DSNA 228
              L   +  +             L  + +  N +   I      NL  L  + +  +N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 229 LSGSILNEI-GNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPP-SF 285
           L   I  E   NL +L YL +++  +   +P +   +    V+L++ DN     I   SF
Sbjct: 92  LL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 286 GNLT-NLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV 343
             L+     L++ KN I   I +      +         N L           +    ++
Sbjct: 150 VGLSFESVILWLNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG-PVIL 207

Query: 344 CLSSNHI 350
            +S   I
Sbjct: 208 DISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 8/153 (5%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIP-LSLGNLT-NLATLYLDSNALS 230
           L +    I   + D           L + DN    +I   S   L+     L+L+ N + 
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167

Query: 231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTN 290
               +     +        +N L           +  V+L++S  ++  L      NL  
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLN 323
           L     Y      +    +  L +L   +L+  
Sbjct: 228 LRARSTYNLKKLPT----LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI-GNLKSLSN 317
           +P     N + L     KL  +   +F    +L  + + +N +   I  ++  NL  L  
Sbjct: 24  IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83

Query: 318 INLS-LNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           I +   N L    P +  NL N L+ + +S+  I
Sbjct: 84  IRIEKANNLLYINPEAFQNLPN-LQYLLISNTGI 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 217 TNLATLYLDSNALSGSILNEIG---NLKSLYYLELTSNTLSGSIPLPLG---NLTNLVVL 270
            +   L L+ N L    ++  G    L  L  LEL  N L+G   +        +++  L
Sbjct: 29  LHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGASHIQEL 83

Query: 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLSNINLSLN 323
           +L +NK+  +    F  L  L TL +Y N    +     +   +L SL+++NL+ N
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 197 NLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEIG---NLKSLYYLELTSNT 252
            L L DN L       L G L +L  L L  N L+  I  E         +  L+L  N 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GI--EPNAFEGASHIQELQLGENK 89

Query: 253 LSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           +     +       L  L  L L DN++S ++P SF +L +LT+L +  N
Sbjct: 90  IKE---ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 198 LRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI 257
           ++L    +  +      N      L L    +   I N    L     ++ + N +    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 258 PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLS 316
             P   L  L  L +++N++  +       L +LT L +  NS+     LD + +LKSL+
Sbjct: 59  GFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 317 NINLSLN 323
            + +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 246 LELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
           ++LT+  +  +      N      L+L   K+  +I      L     +    N I    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RK 56

Query: 306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI 350
           LD    L+ L  + ++ N++   I   L      L  + L++N +
Sbjct: 57  LDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 178 INAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI 237
           I              + +  L      +   +  +L  L     L L +N +   I + +
Sbjct: 11  IRIFEERKSVVATEAEKV-ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-L 66

Query: 238 GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297
             +++L  L L  N +   I         L  L +S N+++ L       L NL  LY+ 
Sbjct: 67  SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMS 123

Query: 298 KNSIFG-SILDEIGNLKSLSNINLSLNKL 325
            N I     +D++  L  L ++ L+ N L
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 24/129 (18%)

Query: 234 LNEIGNLKSLYYLELTSNTLSGS------IPLPLGNLTNLVVLELSDN---KLSGLIPPS 284
           +      KS+   E     L G       +   L  L     L LS N   K+S L    
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL---- 66

Query: 285 FGNLTNLTTLYVYKNSIFGSILDEIGNL-KSLSNINLSLNKLNGSIPLSLTNLTN--SLE 341
              + NL  L + +N I    ++ +  +  +L  + +S N++      SL+ +    +L 
Sbjct: 67  -SGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA-----SLSGIEKLVNLR 118

Query: 342 VVCLSSNHI 350
           V+ +S+N I
Sbjct: 119 VLYMSNNKI 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.1 bits (138), Expect = 5e-10
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 211 LSLGNLTNLATLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV 269
           L       +  L LD+   + G I        +L +L L +  L  S+   L  L  L  
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKK 75

Query: 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLSNINLSLN 323
           LELS+N++ G +      L NLT L +  N +   S L+ +  L+ L +++L   
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 190 RSLKSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
           R+  ++  L L +   + G I        NL  L L +  L    ++ +  L  L  LEL
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLEL 78

Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL--IPPSFGNLTNLTTLYVYKNSI 301
           + N + G + +    L NL  L LS NKL  +  + P    L  L +L ++   +
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 239 NLKSLYYLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297
              ++  L L +   + G I        NL  L L +  L  +   +   L  L  L + 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS-LTNLTNSLEVVCLSSNHIV 351
           +N IFG +      L +L+++NLS NKL     L  L  L   L+ + L +  + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC-LKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-S 232
           L L    +    +  +  L  L  L L +N + G + +    L NL  L L  N L   S
Sbjct: 54  LSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 233 ILNEIGNLKSLYYLELTSN 251
            L  +  L+ L  L+L + 
Sbjct: 112 TLEPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 7e-10
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)

Query: 211 LSLGNLTNLATLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV 269
           L     +++  L LD++  + G +       + L +L   +  L+ SI   L  L  L  
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKK 68

Query: 270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG-SILDEIGNLKSLSNINLSLN 323
           LELSDN++SG +        NLT L +  N I   S ++ +  L++L +++L   
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 190 RSLKSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
           R+   +  L L ++  + G +         L  L   +  L  + +  +  L  L  LEL
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLEL 71

Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSI 301
           + N +SG + +      NL  L LS NK+  L        L NL +L ++   +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 239 NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298
           ++K L      SN   G +         L  L   +  L+ +   +   L  L  L +  
Sbjct: 18  DVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 299 NSIFGSILDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNHI 350
           N + G +        +L+++NLS NK+   S    L  L N L+ + L +  +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN-LKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSG-S 232
           L      ++   +  +  L  L  L L DN +SG + +      NL  L L  N +   S
Sbjct: 47  LSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 233 ILNEIGNLKSLYYLELTSN 251
            +  +  L++L  L+L + 
Sbjct: 105 TIEPLKKLENLKSLDLFNC 123

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSN---ALSGSILNEIGNLKSLYYLELTSNTL 253
            L L  N L          LT L  L L  N   +L   + +++  L  LY   L  N L
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY---LHENKL 88

Query: 254 SGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
                LP G    LT L  L L  N+L  +    F  LT+L  ++++ N
Sbjct: 89  QS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 13/110 (11%)

Query: 245 YLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN-- 299
            LEL SN L     LP G    LT L  L LS N++  L    F  LT LT LY+++N  
Sbjct: 32  RLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

Query: 300 -SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            S+   + D++  LK L+   L  N+L  S+P  + +   SL+ + L +N
Sbjct: 89  QSLPNGVFDKLTQLKELA---LDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSLS 316
           P G  ++   LEL  NKL  L    F  LT LT L + +N   S+   + D++  L  L 
Sbjct: 23  PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL- 81

Query: 317 NINLSLNKLNGSIPL----SLTNLT 337
              L  NKL  S+P      LT L 
Sbjct: 82  --YLHENKLQ-SLPNGVFDKLTQLK 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 2e-09
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNE-IGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
                L    NL  LY+++      +    +  L  L  L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI 301
           L  L LS N L  L   +   L +L  L +  N +
Sbjct: 82  LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 168 TWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPL-SLGNLTNLATLYLDS 226
              + L      A+    L  +   ++L  L + +      + L  L  L  L  L +  
Sbjct: 8   HGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 227 NALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL 277
           + L   +  +       L  L L+ N L  S+        +L  L LS N L
Sbjct: 66  SGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPS 284
           +   +   L+ +   ++L  L + +      + L  L  L  L  L +  + L  + P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 285 FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           F     L+ L +  N++  S+  +     SL  + LS N L+
Sbjct: 76  FHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 35/208 (16%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLS--GSIPLS--LGNLTNLATLYLDSNA 228
           L +    +S +   E+   L+    +RL D  L+      +S  L     LA L L SN 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 229 LSGSILNEIGN-LKS----LYYLELTSNTLS----GSIPLPLGNLTNLVVLELSDNKLS- 278
           L    ++ +   L++    +  L L +  L+    G +   L  L  L  L LSDN L  
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127

Query: 279 --------GLIPPSFGNLTNLTTLYVYKNSI----FGSILDEIGNLKSLSNINLSLNKLN 326
                   GL+ P       L  L +   S+       +   +        + +S N +N
Sbjct: 128 AGLQLLCEGLLDPQ----CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 327 GS----IPLSLTNLTNSLEVVCLSSNHI 350
            +    +   L +    LE + L S  +
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 178 INAISGSILDEIRSLKSLFNLRLGDNTLS----GSIPLSLGNLTNLATLYLDSNALSGSI 233
           +  +   +L     L++L    + +  ++    G +   L    +L  L L  N L    
Sbjct: 244 MAELCPGLLHPSSRLRTL---WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 234 LNEIGNL-----KSLYYLELTSNTLSG----SIPLPLGNLTNLVVLELSDNKL--SGLIP 282
              +          L  L + S + +          L     L+ L++S+N+L  +G+  
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 283 PSFG---NLTNLTTLYVYKNSI----FGSILDEIGNLKSLSNINLSLNKLN--GSIPLS- 332
              G     + L  L++    +      S+   +    SL  ++LS N L   G + L  
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 333 -LTNLTNSLEVVCLSSNHI 350
            +      LE + L   + 
Sbjct: 421 SVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 26/183 (14%)

Query: 194 SLFNLRLGDNTLS----GSIPLSLGNLTNLATLYLDSNALSGSILNEIG-----NLKSLY 244
            L  L+L   +LS      +   L    +   L + +N ++ + +  +      +   L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 245 YLELTSNTLS----GSIPLPLGNLTNLVVLELSDNKLSG-----LIPPSFGNLTNLTTLY 295
            L+L S  ++      +   + +  +L  L L  NKL       L P      + L TL+
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 296 VYKNSI----FGSILDEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSS 347
           +++  I     G +   +   +SL  ++L+ N+L       +  +L      LE + + S
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 348 NHI 350
              
Sbjct: 323 CSF 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 55/354 (15%), Positives = 105/354 (29%), Gaps = 120/354 (33%)

Query: 23  YLGMEIHDVPFEMVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQH--RWWHKKVLKSRDP 80
           YL     D+P E++      +P  +  I             ++     W           
Sbjct: 310 YLDCRPQDLPREVLT----TNPRRLSIIA----------ESIRDGLATW----------- 344

Query: 81  IFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQ 140
                 W+ +                      +    +      L P + R         
Sbjct: 345 ----DNWKHVN-------------------CDKLTTIIESSLNVLEPAEYRKM------- 374

Query: 141 SVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYL----DINAISGSILDEIRSLKSLF 196
              F  L  V  FP          AH+  PT LL L     I +    +++++    SL 
Sbjct: 375 ---FDRLS-V--FP--------PSAHI--PTILLSLIWFDVIKSDVMVVVNKLHK-YSLV 417

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSN-------ALSGSILNEIGNLKSLYYLELT 249
             +  ++T+S            + ++YL+         AL  SI++     K+    +L 
Sbjct: 418 EKQPKESTIS------------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 250 SNTLSGSIPLPLG------------NLTNLVVLELS--DNKL--SGLIPPSFGNLTN-LT 292
              L       +G             L  +V L+    + K+        + G++ N L 
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 293 TLYVYKNSI------FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSL 340
            L  YK  I      +  +++ I +       NL  +K    + ++L     ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 245 YLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN-- 299
            L L  N ++    L  G    LT L  L+L +N+L+ L    F  LT LT L +  N  
Sbjct: 34  VLYLYDNQITK---LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 300 -SIFGSILDEIGNLKSLSNINLSLN 323
            SI     D   NLKSL++I L  N
Sbjct: 91  KSIPRGAFD---NLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSL 315
           +P G  T   VL L DN+++ L P  F  LT LT L +  N    +   + D++  L  L
Sbjct: 24  VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83

Query: 316 SNINLSLNKLNGSIPL----SLTNLTN 338
           S   L+ N+L  SIP     +L +LT+
Sbjct: 84  S---LNDNQLK-SIPRGAFDNLKSLTH 106

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 30/106 (28%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS 256
            L L DN ++   P     LT L  L LD+N                   +LT       
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-------------------QLTV------ 68

Query: 257 IPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
             LP G    LT L  L L+DN+L  +   +F NL +LT +++  N
Sbjct: 69  --LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 245 YLELTSNTLSGSIPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN-- 299
            L L +N ++    L  G   +L NL  L  + NKL+ +    F  LT LT L +  N  
Sbjct: 37  RLWLNNNQITK---LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

Query: 300 -SIFGSILDEIGNLKSLSNINLSLN 323
            SI     D   NLKSL++I L  N
Sbjct: 94  KSIPRGAFD---NLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN---SIFGSILDEIGNLKSL 315
           +P G  T+   L L++N+++ L P  F +L NL  LY   N   +I   + D++  L  L
Sbjct: 27  VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86

Query: 316 SNINLSLNKLNGSIPL----SLTNLTN 338
               L+ N L  SIP     +L +LT+
Sbjct: 87  D---LNDNHLK-SIPRGAFDNLKSLTH 109

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 30/106 (28%)

Query: 197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS 256
            L L +N ++   P    +L NL  LY +SN                   +LT+      
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-------------------KLTA------ 71

Query: 257 IPLPLG---NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
             +P G    LT L  L+L+DN L  +   +F NL +LT +Y+Y N
Sbjct: 72  --IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 36/205 (17%), Positives = 62/205 (30%), Gaps = 42/205 (20%)

Query: 174 LYLDINAISG----SILDEIRSLKSLFNLRLGDNTLS--GSIPLS--LGNLTNLATLYLD 225
             L ++AI+     S+   +    S+  + L  NT+    +  LS  + +  +L      
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG----LI 281
                       G +K      L        +   L     L  + LSDN         +
Sbjct: 69  DI--------FTGRVKDEIPEALRL------LLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 282 PPSFGNLTNLTTLYVYKNSI-------FGSILDEIGNL------KSLSNINLSLNKL--N 326
                  T L  LY++ N +           L E+           L +I    N+L   
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174

Query: 327 GSIPLSLTNLTN-SLEVVCLSSNHI 350
                + T  ++  L  V +  N I
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 28/168 (16%)

Query: 184 SILDEIRSLKSLFNLRLGDNTLS--GSIPLS--LGNLTNLATLYLDSNALS----GSILN 235
           ++  + ++   L ++  G N L        +    +   L T+ +  N +       +L 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 236 E-IGNLKSLYYLELTSNTLS--GSIPLP--LGNLTNLVVLELSDNKLSG----LIPPSFG 286
           E +   + L  L+L  NT +  GS  L   L +  NL  L L+D  LS      +  +F 
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 287 NLTN--LTTLYVYKNSI-------FGSILDEIGNLKSLSNINLSLNKL 325
            L N  L TL +  N I         +++DE   +  L  + L+ N+ 
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDE--KMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 22/126 (17%)

Query: 174 LYLDINAIS----GSILDE-IRSLKSLFNLRLGDNTLS--GSIPLS--LGNLTNLATLYL 224
           + +  N I       +L E +   + L  L L DNT +  GS  L+  L +  NL  L L
Sbjct: 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 225 DSNALS-------GSILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----NLTNLVVLEL 272
           +   LS           +++ N   L  L L  N +       L       + +L+ LEL
Sbjct: 252 NDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310

Query: 273 SDNKLS 278
           + N+ S
Sbjct: 311 NGNRFS 316

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 24/249 (9%), Positives = 65/249 (26%), Gaps = 21/249 (8%)

Query: 67  HRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLA 126
                  +        V++  + ++   + +++         +       +  +      
Sbjct: 78  VEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEK 137

Query: 127 PPQMRSCCPKFIQQSVMFSMLFHVLDF-PHTAYSDSMEEAHVTWPTWLLYLDINAISGSI 185
                      I            +D  P       +    +     L      +I    
Sbjct: 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL------SIGKKP 191

Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI------GN 239
              ++SL+ + +  L D+ +   +   L NL  L       +      +N          
Sbjct: 192 RPNLKSLE-IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 240 LKSLYYLELTSNTLSGSIPLPLGN---LTNLVVLELSDNKLSG----LIPPSFGNLTNLT 292
             +L +L +        +         L  L  +++S   L+     L+      + +L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 293 TLYVYKNSI 301
            + +  N +
Sbjct: 311 FINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 25/183 (13%)

Query: 187 DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG--NLKSLY 244
           D    L ++  L       + ++ +      NL +L + S  L  S++ +I   +L +L 
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 245 YLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304
            L L            +     L                S     NL  L +        
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLF---------------SKDRFPNLKWLGIVDAEEQNV 267

Query: 305 I---LDEIGNLKSLSNINLSLNKLNGS----IPLSLTNLTNSLEVVCLSSNHIVGEIPLE 357
           +     E   L  L  +++S   L       +   +  + + L+ + +  N++  E+  E
Sbjct: 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLSDEMKKE 326

Query: 358 LRK 360
           L+K
Sbjct: 327 LQK 329

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 209 IPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV 268
           + L +    + +   LD   L G   +     +++  +    + ++ ++ +   N+  L+
Sbjct: 117 LKLIMSKRYDGSQQALD---LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELL 173

Query: 269 VLELSDNKLSGLIPPS--FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL 322
            L LS+N+L  L   S       NL  L +  N +      E+  +K L    L L
Sbjct: 174 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL--KSERELDKIKGLKLEELWL 227

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 33/203 (16%)

Query: 178 INAISGSILDEIRSLKSLFNLRLGDNTLS--GSIPLSLG---NLTNLATLYLDSNALSGS 232
            +    +  +   S+ SL    L  N L    S  L         N+ +L L  N L+  
Sbjct: 126 SSEFKQAFSNLPASITSL---NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 233 ILNEIGNL-----KSLYYLELTSNTL--SGSIPLP---LGNLTNLVVLELSDNKLSG--- 279
              E+         S+  L+L++N L       L         ++V L L  N L G   
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 280 -LIPPSFGNLTNLTTLYVYKNSI-------FGSILDEIGNLKSLSNINLSLNKLN--GSI 329
             +     +L +L T+Y+  + +         ++     N++ +  ++ +  +++   SI
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 330 PLS--LTNLTNSLEVVCLSSNHI 350
           P+S  +  L+   +V  L +  +
Sbjct: 303 PISNLIRELSGKADVPSLLNQCL 325

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           LP     +   L L+ N L+ L P     L  L T ++  N
Sbjct: 25  LPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.4
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.4
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=5e-32  Score=275.10  Aligned_cols=213  Identities=35%  Similarity=0.519  Sum_probs=143.2

Q ss_pred             ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      ...+.|+.|++++|.+.+.+|..+.. ..++.++++.|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            33445666677776666666654433 24556666677777666767777777777777777777666766777777777


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC----------------------------------------
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL----------------------------------------  261 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----------------------------------------  261 (365)
                      |++++|.+++.+|..+..+++|++|++++|.+.+.+|..+                                        
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            7777777766667777777777777777776665554332                                        


Q ss_pred             ------------------------------CCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCC
Q 045705          262 ------------------------------GNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN  311 (365)
Q Consensus       262 ------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~  311 (365)
                                                    +.+++|+.|++++|.+++.+|..++.+++|+.|+|++|.+++.+|..++.
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  678 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD  678 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence                                          22345666777777777777777777777777777777777677777777


Q ss_pred             CCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705          312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       312 l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~  356 (365)
                      +++|+.|||++|+++|.+|..+..++ +|++||+++|+++|.+|.
T Consensus       679 L~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          679 LRGLNILDLSSNKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCC-CCSEEECCSSEEEEECCS
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCC-CCCEEECcCCcccccCCC
Confidence            77777777777777777777766666 577777777777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=2.3e-31  Score=270.19  Aligned_cols=292  Identities=28%  Similarity=0.372  Sum_probs=237.5

Q ss_pred             HHHccCCCCcEEEeccccCCceee-EEEEEeeccccccceecccCCceEEeeccccccccceeeeecccccccccccccC
Q 045705           35 MVEYFDPCHPVLVGGIGLGKQNVG-YMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPE  113 (365)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~w~~~~~~~~~p~~~s~gw~~~~~l~~~~l~~~~~~~~~l~~~p~  113 (365)
                      .++++++++|.+.|.++....++. .++.    ++. ..+.+.+..|.  .++...+..+..+.+.+..           
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~----L~L-s~N~l~~~~~~--~~~~~~~~~L~~L~L~~n~-----------  405 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLT----LDL-SSNNFSGPILP--NLCQNPKNTLQELYLQNNG-----------  405 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSE----EEC-CSSEEEEECCT--TTTCSTTCCCCEEECCSSE-----------
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcE----EEc-cCCCcCCCcCh--hhhhcccCCccEEECCCCc-----------
Confidence            378899999999999887755443 2222    444 44444432221  1111112233333332221           


Q ss_pred             ccccceeeeeccCCCCCCCccccccccccccccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCC
Q 045705          114 HMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSL  192 (365)
Q Consensus       114 ~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l  192 (365)
                             +.|.++.             .+...+.|++|++++|.+.+.+|..+... .++.++++.|.+.+.+|..+..+
T Consensus       406 -------l~~~~p~-------------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  465 (768)
T 3rgz_A          406 -------FTGKIPP-------------TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV  465 (768)
T ss_dssp             -------EEEECCG-------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             -------cccccCH-------------HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence                   2332211             23344579999999999998888766543 67889999999999999999999


Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL  272 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (365)
                      ++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  545 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL  545 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred             CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCcc--------------------------------------------------------------------
Q 045705          273 SDNKLSGLIPPS--------------------------------------------------------------------  284 (365)
Q Consensus       273 ~~n~l~~~~~~~--------------------------------------------------------------------  284 (365)
                      ++|.+++.+|..                                                                    
T Consensus       546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~  625 (768)
T 3rgz_A          546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS  625 (768)
T ss_dssp             CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred             CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence            999988766643                                                                    


Q ss_pred             --CcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          285 --FGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       285 --l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                        ++.+++|+.|++++|++++.+|..++.++.|+.|+|++|.++|.+|..+..++ +|+.|||++|+++|.+|..+++++
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCC
T ss_pred             hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCC
Confidence              34467899999999999999999999999999999999999999999999998 799999999999999999999999


Q ss_pred             CCC
Q 045705          363 SLV  365 (365)
Q Consensus       363 ~L~  365 (365)
                      +|+
T Consensus       705 ~L~  707 (768)
T 3rgz_A          705 MLT  707 (768)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=6.8e-31  Score=239.12  Aligned_cols=220  Identities=29%  Similarity=0.428  Sum_probs=162.4

Q ss_pred             ccccccceeeeccCC-CCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC
Q 045705          141 SVMFSMLFHVLDFPH-TAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN  218 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~-n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~  218 (365)
                      .+...+.|++|++++ |.+.+.+|..+.. ..++.++|+.|.+++..|..+..+++|++|++++|.+++..|..+..+++
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            344455677777774 7776666655443 25566777777777777777777777777777777777777777777777


Q ss_pred             CcEEEcccCcCCCcchhhhcCCC-CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          219 LATLYLDSNALSGSILNEIGNLK-SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      |++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+++..|..+..+++|+.|+++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            77777777777767777777776 777777777777777777777766 7777777777777777777788888888888


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +|.+.+.++. +..+++|++|+|++|.+++.+|..+..++ +|++|++++|+++|.+|.. +++++|
T Consensus       230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L  293 (313)
T 1ogq_A          230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRF  293 (313)
T ss_dssp             SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGS
T ss_pred             CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc-CCCEEECcCCcccccCCCC-cccccc
Confidence            8887665554 67778888888888888877888877777 6888888888888888765 555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.6e-30  Score=236.65  Aligned_cols=216  Identities=28%  Similarity=0.387  Sum_probs=196.1

Q ss_pred             ceeeeccCCCCCCC--cchhhhccc-cccceeccc-ccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          147 LFHVLDFPHTAYSD--SMEEAHVTW-PTWLLYLDI-NAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       147 ~L~~L~ls~n~l~~--~~~~~~~~~-~~~~l~L~~-n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      .++.|++++|.+.+  .+|..+... .++.++++. |.+.+.+|..++.+++|++|++++|.+++..|..+.++++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            68899999999988  777655543 678899994 99999999999999999999999999998999999999999999


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCC-CCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT-NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      ++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            9999999988999999999999999999999988999999998 999999999999988999999887 99999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..+..+..+++|+.|+|++|.+++.+|. +..++ +|++|++++|++++.+|..+.++++|+
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCC
Confidence            988999999999999999999999966665 66666 799999999999999999999998874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.7e-29  Score=228.35  Aligned_cols=214  Identities=19%  Similarity=0.247  Sum_probs=193.1

Q ss_pred             cceeeeccCCCCCCCcchhhhc-cccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHV-TWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~-~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      ..++.|++++|.+. .+|..+. -..++.++|+.|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            46899999999996 5555433 346788999999999 78899999999999999999999 77889999999999999


Q ss_pred             ccCcCCCcchhhhcC---------CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEE
Q 045705          225 DSNALSGSILNEIGN---------LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY  295 (365)
Q Consensus       225 s~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  295 (365)
                      ++|.+.+.+|..+..         +++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence            999888888887764         999999999999999 788889999999999999999996 566799999999999


Q ss_pred             eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..++ +|++|++++|++.+.+|..++++++|.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCce
Confidence            999999999999999999999999999999999999999988 799999999999999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.2e-28  Score=235.50  Aligned_cols=211  Identities=20%  Similarity=0.183  Sum_probs=129.1

Q ss_pred             cccceeeeccCCCCCCCcchhhh--ccccccceecccccccccchhhhhCC-----------------------------
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAH--VTWPTWLLYLDINAISGSILDEIRSL-----------------------------  192 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~--~~~~~~~l~L~~n~l~~~~~~~~~~l-----------------------------  192 (365)
                      ..+.|++|++++|.+.+..|...  ....++.++++.|.+++..+..+..+                             
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  206 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG  206 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence            34567777777777766655532  22355667777777776666555433                             


Q ss_pred             -----CCCcEEEeeCCcCCCccCcCC-------------------------------------C--CCCCCcEEEcccCc
Q 045705          193 -----KSLFNLRLGDNTLSGSIPLSL-------------------------------------G--NLTNLATLYLDSNA  228 (365)
Q Consensus       193 -----~~L~~L~ls~n~i~~~~~~~~-------------------------------------~--~l~~L~~L~Ls~n~  228 (365)
                           ++|+.|++++|.+++..|..+                                     .  ..++|++|++++|.
T Consensus       207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence                 345555555555443222111                                     0  01356666666666


Q ss_pred             CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhh
Q 045705          229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE  308 (365)
Q Consensus       229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  308 (365)
                      +.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            66555666666667777777777766665666666677777777777766666666666677777777777766666666


Q ss_pred             cCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       309 l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      +..+++|++|+|++|.+++..+..+..++ +|++|++++|++++..|
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred             ccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcccCCC
Confidence            66677777777777777643333444555 57777777777766665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.5e-27  Score=209.88  Aligned_cols=210  Identities=23%  Similarity=0.219  Sum_probs=186.5

Q ss_pred             cccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCc-CCCccCcCCCCCCCCcE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNT-LSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~  221 (365)
                      ..+.+++|++++|.+.+..+..+.. ..++.++++.|.+++..+..+..+++|++|++++|. ++...+..+..+++|++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            3457999999999997766554433 367889999999998889999999999999999997 88777889999999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999999988888999999999999999999977777799999999999999999987777899999999999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI  354 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~  354 (365)
                      .+..+..+..+++|+.|++++|.+++..+..+..++ +|+.|++++|+++...
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEECSG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc-ccCEEeccCCCccCCC
Confidence            888899999999999999999999976666787787 7999999999998543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.8e-27  Score=209.76  Aligned_cols=214  Identities=24%  Similarity=0.218  Sum_probs=191.3

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA  228 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  228 (365)
                      ++++.+++.+.. +|... ...++.++++.|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~-ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCccc-CCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            467888888854 44332 3467889999999998888899999999999999999998889999999999999999997


Q ss_pred             -CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          229 -LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       229 -l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                       +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence             8877788999999999999999999988888899999999999999999988888899999999999999999877777


Q ss_pred             hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+++..+..+..+++|.
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccC
Confidence            899999999999999999977788888888 799999999999976667798888874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.1e-26  Score=212.59  Aligned_cols=210  Identities=19%  Similarity=0.218  Sum_probs=189.0

Q ss_pred             cccccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC-
Q 045705          138 IQQSVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN-  215 (365)
Q Consensus       138 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~-  215 (365)
                      ++..+...+.|++|++++|.+. .+|..+.. ..++.++|+.|.++ .+|..+..+++|++|++++|.+.+.+|..+.. 
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~  173 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST  173 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred             cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence            3344555678999999999997 66664433 46788999999999 77999999999999999999988888887764 


Q ss_pred             --------CCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcC
Q 045705          216 --------LTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGN  287 (365)
Q Consensus       216 --------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  287 (365)
                              +++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..++.+++|++|++++|.+.+.+|..++.
T Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence                    999999999999998 788999999999999999999994 6677999999999999999999999999999


Q ss_pred             CCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          288 LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       288 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      +++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..++ +|+.+++..+.+..
T Consensus       252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC
T ss_pred             CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 79999999887763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.2e-27  Score=237.85  Aligned_cols=218  Identities=18%  Similarity=0.170  Sum_probs=128.6

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCC-CcEEEeeCCcCCCccCcCCCCCC--C
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKS-LFNLRLGDNTLSGSIPLSLGNLT--N  218 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~~~~l~--~  218 (365)
                      +...+.|++|++++|.+.+.+|.......++.++++.|.++ .+|..+..+++ |++|++++|.++ .+|..+..+.  +
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~  403 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV  403 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred             hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence            44445666777777766656662112234555666666666 55666666666 777777766666 5555555443  6


Q ss_pred             CcEEEcccCcCCCcchhhhc-------CCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCC---
Q 045705          219 LATLYLDSNALSGSILNEIG-------NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNL---  288 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---  288 (365)
                      |++|++++|.+.+..|..+.       .+++|++|++++|.+....+..+..+++|++|++++|.++...+..+...   
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~  483 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN  483 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence            66666666666666666665       55666666666666663322334446666666666666663322233222   


Q ss_pred             ----CccceEEeeccccCCcchhhcC--CCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc------cCccccccCCh
Q 045705          289 ----TNLTTLYVYKNSIFGSILDEIG--NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL------SSNHIVGEIPL  356 (365)
Q Consensus       289 ----~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l------~~n~l~~~~p~  356 (365)
                          ++|+.|++++|.++ .+|..+.  .+++|++|+|++|.+++ +|..+..++ +|+.|++      ++|++.+.+|.
T Consensus       484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCcccccCcccccChH
Confidence                26666666666665 4444554  66666666666666664 666666665 5666666      34556666666


Q ss_pred             hhhcCCCC
Q 045705          357 ELRKHSSL  364 (365)
Q Consensus       357 ~l~~l~~L  364 (365)
                      .++++++|
T Consensus       561 ~l~~l~~L  568 (636)
T 4eco_A          561 GITLCPSL  568 (636)
T ss_dssp             TGGGCSSC
T ss_pred             HHhcCCCC
Confidence            66666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2e-26  Score=220.16  Aligned_cols=219  Identities=20%  Similarity=0.128  Sum_probs=189.0

Q ss_pred             cccceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ..+.+++|+|++|.+.+..+..+... .++.++|+.|.+++..+..|.++++|++|+|++|.++...+..|.++++|++|
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            34579999999999987766655443 67889999999999888999999999999999999998888889999999999


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccC-cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSN-TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      ++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence            99999999777778999999999999985 44434445688999999999999999865  3588899999999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|++++..+..+..+++|+
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCC
Confidence            888899999999999999999999977777788887 799999999999977777778887763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=3.1e-27  Score=234.94  Aligned_cols=213  Identities=18%  Similarity=0.197  Sum_probs=162.8

Q ss_pred             cceeeeccCCCCCCCcchh--hhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC-CcE
Q 045705          146 MLFHVLDFPHTAYSDSMEE--AHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN-LAT  221 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~--~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~-L~~  221 (365)
                      +.|++|++++|.+. .+|.  .+.. ..++.++++.|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++
T Consensus       305 ~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN  381 (636)
T ss_dssp             GTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred             CCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence            56788888888876 5555  3333 356677777888877777 7777778888888888877 67777777887 888


Q ss_pred             EEcccCcCCCcchhhhcCCC--CCCEEEcccCcCCCCCcccCC-------CCCCCCEEECCCCcCCCCCCccCcCCCccc
Q 045705          222 LYLDSNALSGSILNEIGNLK--SLYYLELTSNTLSGSIPLPLG-------NLTNLVVLELSDNKLSGLIPPSFGNLTNLT  292 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  292 (365)
                      |++++|.++ .+|..+..+.  +|++|++++|.+.+..|..+.       .+++|++|++++|.++...+..+..+++|+
T Consensus       382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            888888887 6777766654  788888888888877777777       677888888888888855444556688888


Q ss_pred             eEEeeccccCCcchhhcCCC-------CCCCeEECcCCcCCCCchhHhh--hccCCCcEEEccCccccccCChhhhcCCC
Q 045705          293 TLYVYKNSIFGSILDEIGNL-------KSLSNINLSLNKLNGSIPLSLT--NLTNSLEVVCLSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       293 ~L~L~~n~l~~~~~~~l~~l-------~~L~~L~L~~N~l~~~~p~~l~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  363 (365)
                      +|++++|.++...+..+...       ++|++|+|++|.++ .+|..+.  .++ +|+.|++++|++++ +|..++++++
T Consensus       461 ~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             EEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             EEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCC
Confidence            89998888874433333333       28999999999999 8888876  777 79999999999996 8999999888


Q ss_pred             CC
Q 045705          364 LV  365 (365)
Q Consensus       364 L~  365 (365)
                      |+
T Consensus       538 L~  539 (636)
T 4eco_A          538 LK  539 (636)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=7.1e-27  Score=211.77  Aligned_cols=210  Identities=22%  Similarity=0.224  Sum_probs=138.3

Q ss_pred             ccccceeeeccCCCCCCCcc--hh-hhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCC
Q 045705          143 MFSMLFHVLDFPHTAYSDSM--EE-AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTN  218 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~--~~-~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~  218 (365)
                      ...+.|++|++++|.+....  +. ......++.++++.|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++
T Consensus        49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             hccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            34456677777777665321  22 2222355666666776663 44556667777777777777765444 45667777


Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence            7777777777766666667777777777777777664 356666777777777777777776666677777777777777


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      +|.+.+..+..+..+++|++|++++|.+++..|..+..++.+|++|++++|++++.
T Consensus       208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            77776665666677777777777777777666666666644577777777777643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=227.54  Aligned_cols=210  Identities=18%  Similarity=0.114  Sum_probs=162.7

Q ss_pred             ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      ...+.|+.|++++|.+.+..+..+.. ..++.++++.|.++...+..+..+++|+.|++++|.+.+..+..|..+++|++
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  204 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV  204 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence            34456778888888776655544433 25667777888887777777788888888888888888777777888888888


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|...+.++.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+
T Consensus       205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred             eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence            88888877667776666666888888888888855446788888888888888888877777888888888888888888


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      .+..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|+++..
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLETLILDSNPLACD  335 (477)
T ss_dssp             SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-GCCEEECCSSCEECS
T ss_pred             ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-ccCEEEccCCCccCc
Confidence            888888888888889999998888855555556666 688899988888743

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=3.9e-27  Score=233.15  Aligned_cols=175  Identities=25%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             hhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchh-hhcCCCCCCEEEcccCcCCCCCcccCCCCCC
Q 045705          188 EIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLTN  266 (365)
Q Consensus       188 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  266 (365)
                      .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            344444444444444444434444444444444444444444333222 2444444444444444444444444444444


Q ss_pred             CCEEECCCCcCCCC---CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEE
Q 045705          267 LVVLELSDNKLSGL---IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV  343 (365)
Q Consensus       267 L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L  343 (365)
                      |++|++++|.+.+.   .+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|++++..|..+..++ .| .|
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L  528 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YL  528 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EE
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EE
Confidence            55555554444431   113344445555555555555444445555555555555555555544455554444 35 55


Q ss_pred             EccCccccccCChhhhcCCCC
Q 045705          344 CLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       344 ~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ++++|++++..|..+..+++|
T Consensus       529 ~L~~N~l~~~~~~~~~~l~~L  549 (606)
T 3t6q_A          529 NLASNHISIILPSLLPILSQQ  549 (606)
T ss_dssp             ECCSSCCCCCCGGGHHHHHTS
T ss_pred             ECcCCcccccCHhhcccCCCC
Confidence            555555554444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.5e-26  Score=221.06  Aligned_cols=223  Identities=21%  Similarity=0.207  Sum_probs=168.2

Q ss_pred             cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhh--hhCCCCCcEEEeeCCcCCCccCcC-CCCCC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDE--IRSLKSLFNLRLGDNTLSGSIPLS-LGNLT  217 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~i~~~~~~~-~~~l~  217 (365)
                      +...+.|++||+++|.+.+..|..+.. ..++.++|+.|.+++..+..  +..+++|++|++++|.+++..|.. +.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            445567999999999987776665543 36778889999998766655  888999999999999999777766 78899


Q ss_pred             CCcEEEcccCcCCCcchhhhcCC----------------------------------CCCCEEEc---------------
Q 045705          218 NLATLYLDSNALSGSILNEIGNL----------------------------------KSLYYLEL---------------  248 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l----------------------------------~~L~~L~L---------------  248 (365)
                      +|++|++++|.+.+..+..+..+                                  ++|++|++               
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            99999999998887666544332                                  33444444               


Q ss_pred             ------------------------------------------------ccCcCCCCCcccCCCCCCCCEEECCCCcCCCC
Q 045705          249 ------------------------------------------------TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL  280 (365)
Q Consensus       249 ------------------------------------------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  280 (365)
                                                                      ++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                                            44444444566677778888888888888877


Q ss_pred             CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       281 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      .+..|.++++|++|++++|.+.+..+..+..+++|++|+|++|.+++..|..+..++ +|++|++++|++++..+..+..
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTT
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhcc
Confidence            777888888888888888888777777788888888888888888866677777776 6888888888888655566677


Q ss_pred             CCCCC
Q 045705          361 HSSLV  365 (365)
Q Consensus       361 l~~L~  365 (365)
                      +++|.
T Consensus       394 l~~L~  398 (455)
T 3v47_A          394 LTSLQ  398 (455)
T ss_dssp             CTTCC
T ss_pred             CCccc
Confidence            77663

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=217.40  Aligned_cols=218  Identities=20%  Similarity=0.141  Sum_probs=177.3

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ...++.|+|++|.+.+..+..+.. ..++.++|+.|.++...+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            357888999999987766555443 3577888999999988888899999999999999999977777888999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCc-CCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNT-LSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF  302 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  302 (365)
                      +++|.+....+..|..+++|++|++++|. +....+..+..+++|++|++++|.++.. | .+..+++|+.|+|++|.++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccC
Confidence            99999987667788889999999998854 4433444688888999999999988854 3 5778888999999999888


Q ss_pred             CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +..+..|..+++|+.|+|++|.+++..+..+..++ +|+.|+|++|++++..+..+..+++|.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCCC
Confidence            88888888889999999999998866677777777 799999999999876667777777663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=8.9e-26  Score=200.93  Aligned_cols=203  Identities=25%  Similarity=0.249  Sum_probs=174.2

Q ss_pred             eeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      .+.++++++.+.. +|... ...++.++|+.|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            5578899998864 45433 245678899999999887788999999999999999999777777889999999999999


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            99977777889999999999999999987778889999999999999999987777789999999999999999888778


Q ss_pred             hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705          308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      .|..+++|++|+|++|.+++..+..+..++ +|+.|++++|++...
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCS
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCeeCC
Confidence            899999999999999999955454566676 799999999998744

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=1.7e-26  Score=228.55  Aligned_cols=212  Identities=22%  Similarity=0.166  Sum_probs=186.4

Q ss_pred             cccccceeeeccCCCCCCCcc--hhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcC-CCCCC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSM--EEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS-LGNLT  217 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~--~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~-~~~l~  217 (365)
                      +...+.|++|++++|.+.+..  +..+.. ..++.++++.|.+.+..+..+..+++|+.|++++|.+++..+.. +..++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            345568999999999997665  333322 36788999999999988999999999999999999998776544 88999


Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC---CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS---IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL  294 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  294 (365)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            999999999999988899999999999999999999752   33568889999999999999999889999999999999


Q ss_pred             EeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          295 YVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       295 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      ++++|++++..|..+..++.| .|++++|.+++..|..+..++ +|+.|++++|+++...+
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS-QQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH-TSSEEECTTCCEECSGG
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC-CCCEEeCCCCCccccCC
Confidence            999999999999999999999 999999999988888888888 79999999999986554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=4.7e-26  Score=202.97  Aligned_cols=209  Identities=24%  Similarity=0.198  Sum_probs=183.3

Q ss_pred             cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ....|+.|++++|.+.. ++.......++.++++.|.+++.  ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            34468899999998854 44444445678899999999863  4788999999999999999988888899999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            99999998778889999999999999999997777778999999999999999998888888999999999999999998


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCC
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  363 (365)
                      ..+..+..+++|+.|++++|.+.+..|        +|+.|+++.|.++|.+|.+++.++.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cCHHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccCC
Confidence            888889999999999999999985543        5889999999999999999887753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=5.2e-26  Score=218.69  Aligned_cols=218  Identities=20%  Similarity=0.124  Sum_probs=121.2

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      .+++||+++|.+.+..+..+.. ..++.++|+.|.+++..|..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            4555555555554443333322 234455555555555555555555555555555555554444445555555555555


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCC------------------------C
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL------------------------I  281 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~  281 (365)
                      +|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.                        .
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            5555544455555555555555555555544444555555555555555555544                        3


Q ss_pred             CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705          282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH  361 (365)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l  361 (365)
                      +..|..+++|+.|++++|...+.++.......+|++|++++|.+++..+..+..++ +|+.|++++|.+++..+..+.++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTC
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhcccc
Confidence            44444444455555554444444433333344666666777777733334566666 68888888888887777778777


Q ss_pred             CCCC
Q 045705          362 SSLV  365 (365)
Q Consensus       362 ~~L~  365 (365)
                      ++|.
T Consensus       272 ~~L~  275 (477)
T 2id5_A          272 LRLQ  275 (477)
T ss_dssp             TTCC
T ss_pred             ccCC
Confidence            7763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.3e-27  Score=213.87  Aligned_cols=188  Identities=20%  Similarity=0.180  Sum_probs=106.4

Q ss_pred             cccceecccccccccchhhh--hCCCCCcEEEeeCCcCCCccCcCCCCC-----CCCcEEEcccCcCCCcchhhhcCCCC
Q 045705          170 PTWLLYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIPLSLGNL-----TNLATLYLDSNALSGSILNEIGNLKS  242 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~  242 (365)
                      .++.++|+.|.+++..|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..|+.+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            34455555555555555544  5555566666666665544 4444444     55666666666665555555666666


Q ss_pred             CCEEEcccCcCCCC--CcccC--CCCCCCCEEECCCCcCCCC---CCccCcCCCccceEEeeccccCCcch-hhcCCCCC
Q 045705          243 LYYLELTSNTLSGS--IPLPL--GNLTNLVVLELSDNKLSGL---IPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKS  314 (365)
Q Consensus       243 L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~  314 (365)
                      |++|++++|++.+.  .+..+  ..+++|++|++++|.+++.   ....+..+++|++|++++|.+.+..+ ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            66666666655432  12222  5555666666666665521   11223345666666666666665543 34455667


Q ss_pred             CCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          315 LSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       315 L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      |++|+|++|.++ .+|..+.  + +|++|++++|++++. |. +..+++|
T Consensus       255 L~~L~Ls~N~l~-~ip~~~~--~-~L~~L~Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QVPKGLP--A-KLSVLDLSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             CCEEECTTSCCS-SCCSSCC--S-EEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred             CCEEECCCCccC-hhhhhcc--C-CceEEECCCCCCCCC-hh-HhhCCCC
Confidence            777777777776 6665554  3 577777777777744 54 6665544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=5.2e-26  Score=206.09  Aligned_cols=217  Identities=22%  Similarity=0.196  Sum_probs=173.2

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      +.+++|++++|.+....+..+.. ..++.++|+.|.++..  .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            46888999998886443333322 3567788888888743  3667778889999999999888 566668888899999


Q ss_pred             EcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccceEEeeccc
Q 045705          223 YLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       223 ~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      ++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            999998875544 578888899999999998887777788888899999999998876 467888888899999999998


Q ss_pred             cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC-CC
Q 045705          301 IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS-SL  364 (365)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~-~L  364 (365)
                      +.+..+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|++++..|..+..++ +|
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhhccC
Confidence            8887788888888999999999998865555666676 799999999999888888887774 55

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3.3e-26  Score=226.50  Aligned_cols=189  Identities=24%  Similarity=0.152  Sum_probs=119.5

Q ss_pred             ccceeccccccccc--chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEEE
Q 045705          171 TWLLYLDINAISGS--ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYLE  247 (365)
Q Consensus       171 ~~~l~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~  247 (365)
                      ++.++++.|.+++.  .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence            44455555666544  2556666666666666666666 344566666666666666666665555 4566666666666


Q ss_pred             cccCcCCCCCcccCCCCCCCCEEECCCCcCCC-CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          248 LTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG-LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       248 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      +++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|.+++..|..+..+++|++|++++|+++
T Consensus       431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence            66666666566666666666666666666665 25566666666666666666666666666666666666666666666


Q ss_pred             CCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          327 GSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       327 ~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      +..|..+..++ +|++|++++|+++ .+|..+..++
T Consensus       511 ~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          511 FLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSC
T ss_pred             CcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhc
Confidence            55566666665 5666666666666 5555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=4.2e-25  Score=198.57  Aligned_cols=201  Identities=22%  Similarity=0.167  Sum_probs=178.0

Q ss_pred             cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ..+.++.++++++.+.. +|.... ..++.++|+.|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~   83 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD   83 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence            34468899999999964 444332 4668899999999998899999999999999999999965443  7899999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+++.
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            9999998 678889999999999999999997777889999999999999999998888889999999999999999988


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ..+..|..+++|++|+|++|.++ .+|..++... +|+.|++++|++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence            77778899999999999999999 8898888887 7999999999886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.4e-25  Score=226.32  Aligned_cols=210  Identities=19%  Similarity=0.199  Sum_probs=130.0

Q ss_pred             ceeeeccCCCCCCCcchh--hhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCC-CcEE
Q 045705          147 LFHVLDFPHTAYSDSMEE--AHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTN-LATL  222 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~--~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~-L~~L  222 (365)
                      .|+.|++++|.+. .+|.  .+.. ..++.++|+.|.++ .+| .++.+++|+.|++++|.++ .+|..+.++++ |++|
T Consensus       549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred             CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence            6777777777776 5555  3332 35666777777777 566 6777777788888877777 67777777777 8888


Q ss_pred             EcccCcCCCcchhhhcCCCC--CCEEEcccCcCCCCCcccC---C--------------------------CCCCCCEEE
Q 045705          223 YLDSNALSGSILNEIGNLKS--LYYLELTSNTLSGSIPLPL---G--------------------------NLTNLVVLE  271 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--------------------------~l~~L~~L~  271 (365)
                      ++++|.++ .+|..+..+..  |+.|++++|.+.+.+|...   .                          .+++|+.|+
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~  703 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII  703 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence            88888777 66766666544  7888888887765444211   1                          233445555


Q ss_pred             CCCCcCCCCCCccCcC-------CCccceEEeeccccCCcchhhcC--CCCCCCeEECcCCcCCCCchhHhhhccCCCcE
Q 045705          272 LSDNKLSGLIPPSFGN-------LTNLTTLYVYKNSIFGSILDEIG--NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV  342 (365)
Q Consensus       272 L~~n~l~~~~~~~l~~-------l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~  342 (365)
                      +++|.++...+..+..       +++|+.|+|++|.++ .+|..+.  .+++|+.|+|++|.+++ +|..+..++ +|+.
T Consensus       704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~  780 (876)
T 4ecn_A          704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKA  780 (876)
T ss_dssp             CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCE
T ss_pred             CCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCE
Confidence            5555544222222221       125666666666664 3444554  56666666666666663 566666665 5666


Q ss_pred             EEccC------ccccccCChhhhcCCCC
Q 045705          343 VCLSS------NHIVGEIPLELRKHSSL  364 (365)
Q Consensus       343 L~l~~------n~l~~~~p~~l~~l~~L  364 (365)
                      |++++      |.+.+.+|..+.++++|
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCC
Confidence            66654      55666666666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=2.6e-25  Score=222.93  Aligned_cols=216  Identities=25%  Similarity=0.257  Sum_probs=126.4

Q ss_pred             eeeeccCCCCCCCcchhhhcc-ccccceecccccccccch-hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          148 FHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSIL-DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       148 L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      |+.|++++|.+.+..+..+.. ..++.++++.|.+++.++ ..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            444444444444333332221 133444555555544333 344455555555555555554445555555555555555


Q ss_pred             cCcCC--CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCC--------ccCcCCCccceEE
Q 045705          226 SNALS--GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIP--------PSFGNLTNLTTLY  295 (365)
Q Consensus       226 ~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~l~~l~~L~~L~  295 (365)
                      +|.+.  +..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+        ..+.++++|+.|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            55543  3456666677777777777777776656667777777777777777664311        2356677777777


Q ss_pred             eeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh-cCCCC
Q 045705          296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR-KHSSL  364 (365)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L  364 (365)
                      +++|.+....+..|..+++|+.|+|++|.+++..+..+..++ +|+.|++++|++++..|..+. .+++|
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC-CCCEEECCCCcCCccChhHhccccccc
Confidence            777777655555677777777777777777733333344555 677777777777766665554 44444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=6.3e-25  Score=201.08  Aligned_cols=208  Identities=24%  Similarity=0.251  Sum_probs=116.2

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS-------------------  206 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~-------------------  206 (365)
                      .+++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..|..+++|++|++++|.++                   
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~  132 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE  132 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCc
Confidence            4555666666655444332222 24455556666666555555666666666666666555                   


Q ss_pred             --CccCcCCCCCCCCcEEEcccCcCCC--cchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCC
Q 045705          207 --GSIPLSLGNLTNLATLYLDSNALSG--SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIP  282 (365)
Q Consensus       207 --~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  282 (365)
                        +..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+++..+
T Consensus       133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred             ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCH
Confidence              3333334444444444444444431  33344444555555555555544 2333222  456666666666665556


Q ss_pred             ccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh
Q 045705          283 PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR  359 (365)
Q Consensus       283 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~  359 (365)
                      ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++++..+..|.
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS-SCCEEECCSSCCCCCCTTSSS
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC-CcCEEECCCCcCCccChhhcC
Confidence            66666667777777777766655556666677777777777776 6666666665 577777777777654444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=2.1e-25  Score=218.84  Aligned_cols=146  Identities=23%  Similarity=0.319  Sum_probs=110.4

Q ss_pred             CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC--cccCCCCCCCCEEECCCCcCCCCCC-ccCcCCCc
Q 045705          214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI--PLPLGNLTNLVVLELSDNKLSGLIP-PSFGNLTN  290 (365)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~  290 (365)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..  |..+..+++|++|++++|.+++.+| ..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56778888888888888777888888888888888888887532  3567788888888888888877333 45777888


Q ss_pred             cceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh-hhcCCCC
Q 045705          291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHSSL  364 (365)
Q Consensus       291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L  364 (365)
                      |++|++++|.+++..+..+.  ++|+.|+|++|.++ .+|..++.++ +|++|++++|+++ .+|.. +..+++|
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~~l~~L  499 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ-ALQELNVASNQLK-SVPDGVFDRLTSL  499 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC-CCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC-CCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence            88888888888766655443  57888888888888 7777777666 6888888888888 56655 7777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=218.09  Aligned_cols=146  Identities=23%  Similarity=0.315  Sum_probs=112.4

Q ss_pred             CCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccCCCCCCCCEEECCCCcCCCCCCc-cCcCCCc
Q 045705          214 GNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPLGNLTNLVVLELSDNKLSGLIPP-SFGNLTN  290 (365)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~  290 (365)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.+.+  .+|..+..+++|++|++++|.+++.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567788888888888887778888888888888888888875  3456677888888888888888774443 4777788


Q ss_pred             cceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChh-hhcCCCC
Q 045705          291 LTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHSSL  364 (365)
Q Consensus       291 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L  364 (365)
                      |++|++++|.+++..+..+.  ++|+.|++++|.++ .+|..+..++ +|++|++++|+++ .+|.. +..+++|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE-ALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC-CCCEEECCCCcCC-ccCHHHhccCCcc
Confidence            88888888888776666554  67888888888888 7887777776 6888888888888 56654 7777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=3.5e-25  Score=222.08  Aligned_cols=213  Identities=20%  Similarity=0.183  Sum_probs=170.5

Q ss_pred             cccccceeeeccCCCCCCCcchhhhcc--ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC--CccCcCCCCCC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVT--WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS--GSIPLSLGNLT  217 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~--~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~--~~~~~~~~~l~  217 (365)
                      +...+.|++|++++|.+.+.++...+.  ..++.++++.|.+.+..+..|..+++|+.|++++|.++  +..|..+.+++
T Consensus       401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~  480 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR  480 (680)
T ss_dssp             TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred             hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence            345567889999999887766533222  35677888889888888888888899999999998876  56788888899


Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC--------cccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI--------PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT  289 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  289 (365)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..        +..+..+++|++|++++|.++.+.+..|.+++
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~  560 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF  560 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence            9999999999998777778888999999999999887432        12367888899999999998866666788899


Q ss_pred             ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhh-hccCCCcEEEccCccccccCC
Q 045705          290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLT-NLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      +|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+. .++ +|+.|++++|++...-+
T Consensus       561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR-NLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT-TCSEEECTTCCCCBCCC
T ss_pred             CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc-ccCEEEccCCCcccCCc
Confidence            999999999999877777788889999999999999866666565 455 79999999998875543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.8e-26  Score=211.19  Aligned_cols=180  Identities=21%  Similarity=0.138  Sum_probs=95.3

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      .|++|++++|.+.+..+..+.. ..++.++++.|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            4556666666654433322222 244555555666655555555566666666666666654443445556666666666


Q ss_pred             cCcCCCcch-hhhcCCCCCCEEEcccC-cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          226 SNALSGSIL-NEIGNLKSLYYLELTSN-TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       226 ~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +|.+++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            666553222 24555666666666665 2443334455555666666666666655555555555555555555555533


Q ss_pred             cchhhcCCCCCCCeEECcCCcCC
Q 045705          304 SILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      .....+..+++|+.|++++|.++
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCT
T ss_pred             chhhhhhhcccccEEECCCCccc
Confidence            32222333445555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=8.7e-25  Score=200.37  Aligned_cols=211  Identities=24%  Similarity=0.254  Sum_probs=160.5

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      .+.+++|++++|.+.+..+..+.. ..++.++++.|.+++..|..|..+++|++|++++|.++ .+|..+.  ++|++|+
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence            457999999999997766654433 36788999999999888999999999999999999999 5555444  7999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccCCCC--------------------CCCCEEECCCCcCCCCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPLGNL--------------------TNLVVLELSDNKLSGLI  281 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l--------------------~~L~~L~L~~n~l~~~~  281 (365)
                      +++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+                    ++|++|++++|.+++..
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~  209 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE  209 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence            99999997777789999999999999999852  445555544                    35566666666666655


Q ss_pred             CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|++++..+..+..
T Consensus       210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSSC
T ss_pred             HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHccc
Confidence            566777777777777777776666666777777777777777777 6676666666 5777777777777555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.9e-25  Score=198.22  Aligned_cols=208  Identities=23%  Similarity=0.189  Sum_probs=179.0

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      ..+++|++++|.+.+..+..+.. ..++.++++.|.++...+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            46899999999997766544433 36788999999999888889999999999999999999888889999999999999


Q ss_pred             ccCcCCCcchhhhcCCCCCCEEEcccCcCCCC-CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccc----eEEeecc
Q 045705          225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGS-IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT----TLYVYKN  299 (365)
Q Consensus       225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n  299 (365)
                      ++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999977777899999999999999999863 588999999999999999999988778888777777    8999999


Q ss_pred             ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      .+.+..+..+.. .+|++|++++|.+++..+..+..++ +|+.|++++|++++..|
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCCTT
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccc-cccEEEccCCcccccCC
Confidence            997766655554 4899999999999955444556676 79999999999997655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=5.2e-25  Score=206.31  Aligned_cols=216  Identities=21%  Similarity=0.186  Sum_probs=139.3

Q ss_pred             ccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      ...+.|++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..++.+++|++|++++|.++...+..|.++++|++
T Consensus        66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  145 (390)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence            44567999999999997665544433 36788999999999888888999999999999999999666666789999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC-------------------------------------
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL-------------------------------------  264 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------------  264 (365)
                      |++++|.+.+..+..+..+++|++|++++|.+++.....+..+                                     
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~  225 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  225 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence            9999999987778889999999999999998874322222111                                     


Q ss_pred             CCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEE
Q 045705          265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVC  344 (365)
Q Consensus       265 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~  344 (365)
                      ++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|++|+|++|.++ .+|..+..++ +|++|+
T Consensus       226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~  301 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP-TLKVLD  301 (390)
T ss_dssp             SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCT-TCCEEE
T ss_pred             ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCC-CCCEEE
Confidence            1233333333333322  23444455555555555554444455555555555555555554 3333333333 355555


Q ss_pred             ccCccccccCChhhhcCCC
Q 045705          345 LSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       345 l~~n~l~~~~p~~l~~l~~  363 (365)
                      +++|+++ .+|..+..+++
T Consensus       302 L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          302 LSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             CCSSCCC-CCGGGHHHHTT
T ss_pred             CCCCcce-ecCccccccCc
Confidence            5555444 34444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.1e-24  Score=199.76  Aligned_cols=221  Identities=19%  Similarity=0.166  Sum_probs=178.9

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      .+...+.|++|++++|.+.+..|..+.. ..++.++++.|.++. +|..+.  ++|++|++++|.+++..+..+.++++|
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            3455678999999999998776765544 367889999999984 454443  799999999999997777789999999


Q ss_pred             cEEEcccCcCCC--cchhhhcCC--------------------CCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcC
Q 045705          220 ATLYLDSNALSG--SILNEIGNL--------------------KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL  277 (365)
Q Consensus       220 ~~L~Ls~n~l~~--~~~~~l~~l--------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  277 (365)
                      ++|++++|.++.  ..+..+..+                    ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI  229 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            999999999852  445554433                    4677788888888877778899999999999999999


Q ss_pred             CCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhc-----cCCCcEEEccCcccc-
Q 045705          278 SGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNL-----TNSLEVVCLSSNHIV-  351 (365)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~-----~~~L~~L~l~~n~l~-  351 (365)
                      ++..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+...     ...|+.|++++|+++ 
T Consensus       230 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             CCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence            9888888999999999999999996 667789999999999999999995544444432     236899999999987 


Q ss_pred             -ccCChhhhcCCCCC
Q 045705          352 -GEIPLELRKHSSLV  365 (365)
Q Consensus       352 -~~~p~~l~~l~~L~  365 (365)
                       +..|..+..+++|+
T Consensus       309 ~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          309 WEVQPATFRCVTDRL  323 (332)
T ss_dssp             GGSCGGGGTTBCCST
T ss_pred             cccCcccccccchhh
Confidence             67778888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=6.4e-25  Score=216.84  Aligned_cols=204  Identities=25%  Similarity=0.215  Sum_probs=102.5

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      .|++|++++|.+.+..+..+.. ..++.++|+.|.+++..|..|+.+++|++|++++|.+++..+..|.++++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            3444555554444333322221 133444444444444444444444455555555554443333334444445555555


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCC------------------------------------------------
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSI------------------------------------------------  257 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~------------------------------------------------  257 (365)
                      +|.+++..|..|..+++|++|++++|.+.+..                                                
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~  235 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT  235 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCC
T ss_pred             CCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCC
Confidence            55444444444444444444444444443221                                                


Q ss_pred             -----------cccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          258 -----------PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       258 -----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                                 +..+..+++|+.|++++|.+.+..|..|+.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|.++
T Consensus       236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence                       1234445555666666666655555556666666666666666543 2444455566666666666666


Q ss_pred             CCchhHhhhccCCCcEEEccCcccccc
Q 045705          327 GSIPLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       327 ~~~p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                       .+|..+..++ +|+.|++++|.+++.
T Consensus       315 -~i~~~~~~l~-~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          315 -HVERNQPQFD-RLENLYLDHNSIVTL  339 (597)
T ss_dssp             -CCGGGHHHHT-TCSEEECCSSCCCCC
T ss_pred             -ccCcccccCC-CCCEEECCCCCCCCc
Confidence             5555555555 466666666666533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=2.5e-25  Score=226.11  Aligned_cols=211  Identities=18%  Similarity=0.161  Sum_probs=161.1

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhccc-c-ccceecccccccccchhhhhCCC--CCcEEEeeCCcCCCccCcC---C
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVTW-P-TWLLYLDINAISGSILDEIRSLK--SLFNLRLGDNTLSGSIPLS---L  213 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~-~~~l~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~i~~~~~~~---~  213 (365)
                      .+...+.|+.|++++|.+. .+|..+... . ++.++|+.|.++ .+|..+..+.  +|+.|++++|.+.+.+|..   +
T Consensus       590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence            3444556777777777775 555444333 3 666777777777 5666665553  3777777777777655432   2


Q ss_pred             C--CCCCCcEEEcccCcCCCcchhh-hcCCCCCCEEEcccCcCCCCCcccCCCC--------CCCCEEECCCCcCCCCCC
Q 045705          214 G--NLTNLATLYLDSNALSGSILNE-IGNLKSLYYLELTSNTLSGSIPLPLGNL--------TNLVVLELSDNKLSGLIP  282 (365)
Q Consensus       214 ~--~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~  282 (365)
                      .  .+++|++|++++|.++ .+|.. +..+++|+.|+|++|.+. .+|..+...        ++|+.|+|++|.++ .+|
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp  744 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS  744 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred             ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence            2  2347888899988888 45544 458999999999999999 556544332        38999999999999 677


Q ss_pred             ccCc--CCCccceEEeeccccCCcchhhcCCCCCCCeEECcC------CcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705          283 PSFG--NLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL------NKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI  354 (365)
Q Consensus       283 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~------N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~  354 (365)
                      ..+.  .+++|+.|+|++|.+.+ +|..+..+++|+.|+|++      |.+.+.+|..+..++ +|+.|++++|++ +.+
T Consensus       745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBC
T ss_pred             HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC-CCCEEECCCCCC-Ccc
Confidence            7776  89999999999999987 688889999999999976      888889999999998 799999999999 589


Q ss_pred             Chhhh
Q 045705          355 PLELR  359 (365)
Q Consensus       355 p~~l~  359 (365)
                      |..+.
T Consensus       822 p~~l~  826 (876)
T 4ecn_A          822 DEKLT  826 (876)
T ss_dssp             CSCCC
T ss_pred             CHhhc
Confidence            98765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-24  Score=203.54  Aligned_cols=216  Identities=24%  Similarity=0.234  Sum_probs=176.3

Q ss_pred             ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      .+...+.|++|++++|.+.+..+..+.. ..++.++++.|.++...+..|..+++|++|++++|.+++..+..+.++++|
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence            3456678999999999998877765543 367889999999997666667999999999999999998888889999999


Q ss_pred             cEEEcccCcCCCcchhhhcCC-------------------------------------CCCCEEEcccCcCCCCCcccCC
Q 045705          220 ATLYLDSNALSGSILNEIGNL-------------------------------------KSLYYLELTSNTLSGSIPLPLG  262 (365)
Q Consensus       220 ~~L~Ls~n~l~~~~~~~l~~l-------------------------------------~~L~~L~L~~n~l~~~~~~~~~  262 (365)
                      ++|++++|.+++.....+..+                                     ++|++|++++|.+.+.  ..+.
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGG
T ss_pred             CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHc
Confidence            999999999985433333222                                     2466666666666642  4678


Q ss_pred             CCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcE
Q 045705          263 NLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV  342 (365)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~  342 (365)
                      .+++|++|++++|.+++..|..|..+++|+.|++++|.+.+ ++..+..+++|++|++++|+++ .+|..+..++ +|+.
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~  322 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLEN  322 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSE
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccC-cCCE
Confidence            89999999999999998889999999999999999999965 4666678999999999999999 7888888887 7999


Q ss_pred             EEccCccccccCChhhhcCCCC
Q 045705          343 VCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       343 L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      |++++|++++. |  +..+++|
T Consensus       323 L~L~~N~i~~~-~--~~~~~~L  341 (390)
T 3o6n_A          323 LYLDHNSIVTL-K--LSTHHTL  341 (390)
T ss_dssp             EECCSSCCCCC-C--CCTTCCC
T ss_pred             EECCCCcccee-C--chhhccC
Confidence            99999999854 3  4444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=8.5e-25  Score=195.14  Aligned_cols=195  Identities=25%  Similarity=0.278  Sum_probs=172.4

Q ss_pred             ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEc
Q 045705          169 WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL  248 (365)
Q Consensus       169 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  248 (365)
                      ..++.++++.|++++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35688999999999888889999999999999999999888889999999999999999999888889999999999999


Q ss_pred             ccCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCcCCCccceEEeeccccCCcchhhcCCCCCCC----eEECcCC
Q 045705          249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS----NINLSLN  323 (365)
Q Consensus       249 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~N  323 (365)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99999977777899999999999999999875 588999999999999999999887777777666666    8999999


Q ss_pred             cCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          324 KLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       324 ~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .++ .++....... +|+.|++++|++++..+..+.++++|+
T Consensus       188 ~l~-~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          188 PMN-FIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             CCC-EECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             ccc-ccCccccCCC-cccEEECCCCceeecCHhHhccccccc
Confidence            999 5555555555 699999999999976666778888774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=206.90  Aligned_cols=207  Identities=26%  Similarity=0.223  Sum_probs=181.1

Q ss_pred             cccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCc
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLA  220 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~  220 (365)
                      +...+.|++|+|++|.+.+..+..+.. ..++.++|+.|+++...+..|..+++|++|++++|.++...+..|.++++|+
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            345568999999999997766555543 3678899999999988888899999999999999999988888999999999


Q ss_pred             EEEcccC-cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecc
Q 045705          221 TLYLDSN-ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN  299 (365)
Q Consensus       221 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  299 (365)
                      +|++++| .+....+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..|.++++|+.|++++|
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            9999995 455444557999999999999999998 555 4788999999999999999988999999999999999999


Q ss_pred             ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      .+.+..+..|..+++|+.|+|++|++++..+..+..++ +|+.|++++|++.
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~  292 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIHLHHNPWN  292 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT-TCCEEECCSSCEE
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc-CCCEEEcCCCCcc
Confidence            99998899999999999999999999955555666676 7999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.3e-26  Score=209.13  Aligned_cols=201  Identities=17%  Similarity=0.149  Sum_probs=154.6

Q ss_pred             ccceeeeccCCCCCCCcchhhh---ccccccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccCcCCCCC
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAH---VTWPTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIPLSLGNL  216 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~---~~~~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~~~~~~l  216 (365)
                      .+.|++|++++|.+.+.+|...   ....++.++|+.|++++. |..++.+     ++|++|++++|.+++..+..+.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4578888999888887777654   223567788888888877 7777666     888999999998888777888888


Q ss_pred             CCCcEEEcccCcCCCc--chhhh--cCCCCCCEEEcccCcCCCC--Cc-ccCCCCCCCCEEECCCCcCCCCCC-ccCcCC
Q 045705          217 TNLATLYLDSNALSGS--ILNEI--GNLKSLYYLELTSNTLSGS--IP-LPLGNLTNLVVLELSDNKLSGLIP-PSFGNL  288 (365)
Q Consensus       217 ~~L~~L~Ls~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l  288 (365)
                      ++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++.  .+ ..+..+++|++|++++|.+++..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            8999999998887654  34444  7888899999998888731  11 234567888999999998887664 456677


Q ss_pred             CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       289 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ++|++|++++|.++ .+|..+.  ++|++|+|++|++++. |. +..++ +|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCC
Confidence            88899999998886 5565555  7888899999988844 65 66776 68899999988874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=202.93  Aligned_cols=202  Identities=19%  Similarity=0.151  Sum_probs=174.7

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      +.|.+++.++ .+|.... ..++.++++.|+++...+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus        35 ~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            3677888885 4454333 3678899999999987777999999999999999999988888999999999999999999


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                      ++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+..+.
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  192 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK  192 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence            97666679999999999999999995444 47889999999999999 47766778899999999999999999888899


Q ss_pred             hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccC
Q 045705          308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEI  354 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~  354 (365)
                      .+..+++|++|++++|.++ .+|..+.....+|+.|++++|.+++..
T Consensus       193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccc
Confidence            9999999999999999997 677665553348999999999998643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=2.5e-24  Score=205.64  Aligned_cols=212  Identities=23%  Similarity=0.183  Sum_probs=185.2

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA  228 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  228 (365)
                      ..++.++..+. .+|... ...++.++|+.|++++..+..|..+++|+.|++++|.+++..+..|.++++|++|+|++|.
T Consensus        57 ~~v~c~~~~l~-~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCCcC-ccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            45667777774 344432 2456889999999999999999999999999999999998888999999999999999999


Q ss_pred             CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                      ++...+..|..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..|.++++|+.|++++|.+.+.  .
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c
Confidence            99777778999999999999999999777778999999999999994 55545556799999999999999999765  3


Q ss_pred             hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..+++|++|+|++|.+++..|..+..++ +|+.|++++|++++..|..|.++++|+
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            588899999999999999977788888888 799999999999999899999988874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=5.1e-24  Score=187.45  Aligned_cols=201  Identities=24%  Similarity=0.186  Sum_probs=166.0

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      ..+.+|++++.+. .+|.... ..++.++|+.|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4567899999885 4444332 4667899999999998888999999999999999999988888899999999999999


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|+.+++|++|+|++|.+.+..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99998778889999999999999999997777778899999999999999998877789999999999999999988888


Q ss_pred             hhcCCCCCCCeEECcCCcCCCC------chhHhhhccCCCcEEEccCcccc
Q 045705          307 DEIGNLKSLSNINLSLNKLNGS------IPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~~~------~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ..+..+++|+.|+|++|++.+.      ++.++....  .+..+..++.+.
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~--~~~~~~~~~~~~  221 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS--NKVKDGTGQNLH  221 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSG--GGBCC-------
T ss_pred             HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcc--cceeeccCcccc
Confidence            8899999999999999999865      344443332  233444555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=3.8e-24  Score=195.93  Aligned_cols=209  Identities=24%  Similarity=0.313  Sum_probs=152.4

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .+++++++++.+.. +|... ...++.++|+.|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~-lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-VPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCS-CCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccc-cCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            57889999998854 44433 24667899999999988888999999999999999999988899999999999999999


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCc--------------------------ccCCCCCCCCEEECCCCcCCCC
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIP--------------------------LPLGNLTNLVVLELSDNKLSGL  280 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~  280 (365)
                      |.++ .+|..+.  ++|++|++++|.+.+..+                          ..+..+++|++|++++|.++. 
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            9887 3443332  345555555555544333                          344445555555555555543 


Q ss_pred             CCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          281 IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       281 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|+++ .+|..+..
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTT
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhcc
Confidence            222222  5666777777777666677788888888888888888866566777776 6889999998888 78888888


Q ss_pred             CCCCC
Q 045705          361 HSSLV  365 (365)
Q Consensus       361 l~~L~  365 (365)
                      +++|+
T Consensus       262 l~~L~  266 (330)
T 1xku_A          262 HKYIQ  266 (330)
T ss_dssp             CSSCC
T ss_pred             CCCcC
Confidence            87763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.1e-24  Score=187.92  Aligned_cols=190  Identities=26%  Similarity=0.233  Sum_probs=167.4

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      +.++++.++++. +|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus        19 ~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           19 NSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            568888888884 555443  68999999999999888889999999999999999999766677899999999999999


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL  331 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  331 (365)
                      .+.+..+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            99977777889999999999999999998888899999999999999999888777899999999999999999965555


Q ss_pred             HhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          332 SLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       332 ~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..++ +|++|++++|++++..+..+..+++|.
T Consensus       176 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          176 AFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             HhccCC-CcCEEECCCCcCCcCCHHHhccccCCC
Confidence            677777 799999999999976666788888763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=7.3e-25  Score=224.68  Aligned_cols=207  Identities=20%  Similarity=0.178  Sum_probs=140.7

Q ss_pred             cccceeeeccCCCCCCCcchhh-hc-cccccceecccccccccchhhhhCC--CCCcEEEeeCCcCCCccCcCCCCCCC-
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEA-HV-TWPTWLLYLDINAISGSILDEIRSL--KSLFNLRLGDNTLSGSIPLSLGNLTN-  218 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~-~~-~~~~~~l~L~~n~l~~~~~~~~~~l--~~L~~L~ls~n~i~~~~~~~~~~l~~-  218 (365)
                      ..+.|++||+++|.+.+..+.. +. ...++.++|+.|.+++..+..+..+  ++|+.|++++|.+.+..|..+..+++ 
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence            3445667777777665554322 21 2245566666677666666666555  66777777777776666655555544 


Q ss_pred             -----CcEEEcccCcCCCcchhhhcC--------------------------------------CCCCCEEEcccCcCCC
Q 045705          219 -----LATLYLDSNALSGSILNEIGN--------------------------------------LKSLYYLELTSNTLSG  255 (365)
Q Consensus       219 -----L~~L~Ls~n~l~~~~~~~l~~--------------------------------------l~~L~~L~L~~n~l~~  255 (365)
                           |++|++++|.+++..+..+..                                      .++|+.|++++|.+.+
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                 777888777665444433221                                      2567777787777776


Q ss_pred             CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhh
Q 045705          256 SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN  335 (365)
Q Consensus       256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  335 (365)
                      ..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~  360 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF  360 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred             cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence            66777777788888888888887777777777788888888888877777777777888888888888877555555656


Q ss_pred             ccCCCcEEEccCcccc
Q 045705          336 LTNSLEVVCLSSNHIV  351 (365)
Q Consensus       336 ~~~~L~~L~l~~n~l~  351 (365)
                      ++ +|+.|++++|.++
T Consensus       361 l~-~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          361 LE-KLQTLDLRDNALT  375 (844)
T ss_dssp             CC-CCCEEEEETCCSC
T ss_pred             CC-CCCEEECCCCCCC
Confidence            66 6888888888777

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.4e-24  Score=210.24  Aligned_cols=217  Identities=20%  Similarity=0.168  Sum_probs=173.6

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ...++.+++++|.+....+..+.. ..++.++|+.|.+++..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            346889999999985544433332 4678899999999998888999999999999999999998888999999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCc--------------------
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPP--------------------  283 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------  283 (365)
                      +++|.+++..+..|+.+++|++|++++|.+.+..|..++.+++|++|++++|.+++....                    
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            999999966666689999999999999999988888899999999999999988754221                    


Q ss_pred             ---------------------------------------cCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCc
Q 045705          284 ---------------------------------------SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK  324 (365)
Q Consensus       284 ---------------------------------------~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~  324 (365)
                                                             .+..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  289 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  289 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence                                                   24455667777777777766667777777777777777777


Q ss_pred             CCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          325 LNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       325 l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ++ .+|..+..++ +|+.|++++|.++ .+|..+..+++|
T Consensus       290 l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          290 LV-ALNLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             CC-EEECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             CC-CCCcccccCC-CCcEEECCCCCCC-ccCcccccCCCC
Confidence            77 4555555555 6777777777777 677777766665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=1.2e-23  Score=187.29  Aligned_cols=203  Identities=26%  Similarity=0.250  Sum_probs=174.8

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .+..+++..+.+.+.... .....++.++++.|.++.  ...+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        20 ~l~~l~l~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHHTCSCTTSEECH-HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHHhcCccccccccc-ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            355677777777555432 223356778888888874  34588899999999999999863  4788999999999999


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            99998888889999999999999999998777788999999999999999998888889999999999999999998888


Q ss_pred             hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      ..+..+++|++|++++|.+++..+..+..++ +|+.|++++|++++..|
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence            8889999999999999999977776677787 79999999999997766

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.9e-24  Score=213.86  Aligned_cols=211  Identities=22%  Similarity=0.189  Sum_probs=187.7

Q ss_pred             ccccceeeeccCCCCCCCcc--hhhhc-cccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCC
Q 045705          143 MFSMLFHVLDFPHTAYSDSM--EEAHV-TWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTN  218 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~--~~~~~-~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~  218 (365)
                      ...+.|+.|++++|.+.+..  +..+. ...++.++++.|.+++ +|..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus       347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            34567999999999987653  33333 3467889999999886 55888999999999999999998877 68999999


Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC-CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG-SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      |++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.+++..|..+.++++|++|+++
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            9999999999998889999999999999999999987 478889999999999999999999999999999999999999


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      +|++++..|..+..+++|++|+|++|+++ .+|..+..++.+|++|++++|++....+
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999999999999999 8888888887569999999999986544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.9e-23  Score=183.87  Aligned_cols=179  Identities=23%  Similarity=0.212  Sum_probs=161.1

Q ss_pred             ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705          171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS  250 (365)
Q Consensus       171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  250 (365)
                      .+.++++.+.++. +|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            3567888888874 555443  6899999999999998888999999999999999999988888899999999999999


Q ss_pred             CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705          251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      |.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.+++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99998777888999999999999999998888889999999999999999988878889999999999999999996666


Q ss_pred             hHhhhccCCCcEEEccCcccccc
Q 045705          331 LSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       331 ~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      ..+..++ +|+.|++++|++++.
T Consensus       173 ~~~~~l~-~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          173 GAFDRLG-KLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCT-TCCEEECCSCCBCTT
T ss_pred             HHHhCCC-CCCEEEeeCCceeCC
Confidence            6777777 799999999999865

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.3e-24  Score=206.85  Aligned_cols=78  Identities=21%  Similarity=0.275  Sum_probs=53.9

Q ss_pred             cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC--CchhHhhhccCCCcEEEccCccccccCChh-hhcCC
Q 045705          286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG--SIPLSLTNLTNSLEVVCLSSNHIVGEIPLE-LRKHS  362 (365)
Q Consensus       286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~  362 (365)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  .+|..+..++ +|++|++++|.+++.+|.. +..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCc
Confidence            455667777777777776667777777777777777777774  4455666666 6778888888777656653 55555


Q ss_pred             CC
Q 045705          363 SL  364 (365)
Q Consensus       363 ~L  364 (365)
                      +|
T Consensus       400 ~L  401 (520)
T 2z7x_B          400 SL  401 (520)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=2.9e-24  Score=220.22  Aligned_cols=223  Identities=25%  Similarity=0.232  Sum_probs=150.0

Q ss_pred             ccccccceeeeccCCCCCCCcch-hhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcC--CCCC
Q 045705          141 SVMFSMLFHVLDFPHTAYSDSME-EAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLS--LGNL  216 (365)
Q Consensus       141 ~~~~~~~L~~L~ls~n~l~~~~~-~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~--~~~l  216 (365)
                      .+...+.|++||+++|...+.++ ..+.. ..++.++|+.|.+.+..|..|.++++|++|++++|.+++..+..  +.++
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            34556689999999997666663 33333 35788999999999888999999999999999999998766554  8899


Q ss_pred             CCCcEEEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCC--CC---------------------------
Q 045705          217 TNLATLYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNL--TN---------------------------  266 (365)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~---------------------------  266 (365)
                      ++|++|++++|.+.+..+ ..|+.+++|++|++++|.+.+..+..+..+  ++                           
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  202 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR  202 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence            999999999999986654 578999999999999998876544433211  11                           


Q ss_pred             ---CCEEECCCC--------------------------------------------------------------cCCCCC
Q 045705          267 ---LVVLELSDN--------------------------------------------------------------KLSGLI  281 (365)
Q Consensus       267 ---L~~L~L~~n--------------------------------------------------------------~l~~~~  281 (365)
                         |+.|++++|                                                              .+.+..
T Consensus       203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~  282 (844)
T 3j0a_A          203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN  282 (844)
T ss_dssp             TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred             cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence               344444444                                                              333333


Q ss_pred             CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcC
Q 045705          282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKH  361 (365)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l  361 (365)
                      +..|..+++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..|..+..++ +|+.|++++|.+++..+..+..+
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSC
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCC
Confidence            44455555555555555555555555555556666666666666544455555555 46666666666655445555555


Q ss_pred             CCC
Q 045705          362 SSL  364 (365)
Q Consensus       362 ~~L  364 (365)
                      ++|
T Consensus       362 ~~L  364 (844)
T 3j0a_A          362 EKL  364 (844)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=6.2e-25  Score=215.63  Aligned_cols=185  Identities=23%  Similarity=0.198  Sum_probs=137.6

Q ss_pred             cccceecccccccccc--hhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcch-hhhcCCCCCCEE
Q 045705          170 PTWLLYLDINAISGSI--LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSIL-NEIGNLKSLYYL  246 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L  246 (365)
                      .++.++++.|.+++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            4556677777776543  66677777888888888877744443 7777888888888887765544 457777888888


Q ss_pred             EcccCcCCCCCcccCCCCCCCCEEECCCCcCC-CCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcC
Q 045705          247 ELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL  325 (365)
Q Consensus       247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l  325 (365)
                      ++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            88888877777777777888888888888776 45677777888888888888888777777778888888888888888


Q ss_pred             CCCchhHhhhccCCCcEEEccCccccccCCh
Q 045705          326 NGSIPLSLTNLTNSLEVVCLSSNHIVGEIPL  356 (365)
Q Consensus       326 ~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~  356 (365)
                      ++..|..+..++ +|+.|++++|++++..|.
T Consensus       507 ~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          507 KSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred             CCCCHHHhhccc-CCcEEEecCCcccCCCcc
Confidence            766666666666 688888888888776663

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.4e-24  Score=207.43  Aligned_cols=205  Identities=21%  Similarity=0.137  Sum_probs=102.3

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS-------------------  206 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~-------------------  206 (365)
                      .|+.|+|++|.+.+..|..+.. ..++.++|+.|.+++..|  +..+++|++|++++|.++                   
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            4555555555554444433322 234445555555554333  455555555555555554                   


Q ss_pred             CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC-CCCCCCEEECCCCcCCCCCCccC
Q 045705          207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG-NLTNLVVLELSDNKLSGLIPPSF  285 (365)
Q Consensus       207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l  285 (365)
                      +..+.   .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++.  ..+
T Consensus       113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~  187 (487)
T 3oja_A          113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ  187 (487)
T ss_dssp             CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred             CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--ccc
Confidence            33222   234455555555555554455555555555555555555544444443 455555555555555543  122


Q ss_pred             cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcC
Q 045705          286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKH  361 (365)
Q Consensus       286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l  361 (365)
                      ..+++|+.|+|++|.+++..+ .+..+++|+.|+|++|.++ .+|..+..++ +|+.|++++|+++ +.+|..+..+
T Consensus       188 ~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCC-CCCEEEcCCCCCcCcchHHHHHhC
Confidence            235555555555555544322 2455555555555555555 3454444444 4555555555555 4444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=3.1e-24  Score=195.42  Aligned_cols=206  Identities=21%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             ceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCC-------------------
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLS-------------------  206 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~-------------------  206 (365)
                      .|++||+++|.+.+..+..+.. ..++.++|+.|.+++..+  +..+++|++|++++|.++                   
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCS
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccC
Confidence            4555555555554444333322 234455555555554333  455555555555555544                   


Q ss_pred             CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccC-CCCCCCCEEECCCCcCCCCCCccC
Q 045705          207 GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPL-GNLTNLVVLELSDNKLSGLIPPSF  285 (365)
Q Consensus       207 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l  285 (365)
                      +..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++.  ...
T Consensus       113 ~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~  187 (317)
T 3o53_A          113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ  187 (317)
T ss_dssp             EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC
T ss_pred             CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccc
Confidence            33222   24456666666666665555566666666666666666665444444 2456666666666666644  222


Q ss_pred             cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc-ccCChhhhcCC
Q 045705          286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV-GEIPLELRKHS  362 (365)
Q Consensus       286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~-~~~p~~l~~l~  362 (365)
                      ..+++|++|++++|.+++. +..+..+++|++|+|++|.++ .+|..+..++ +|+.|++++|+++ +.+|..+..++
T Consensus       188 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC-CCCEEEccCCCccCcCHHHHHhccc
Confidence            2356666666666666543 333666666666666666666 5565555555 5666666666666 55555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=4.7e-24  Score=186.26  Aligned_cols=189  Identities=18%  Similarity=0.166  Sum_probs=107.2

Q ss_pred             cccceecccccccccchhhhhCCCCCcEEEeeCCc-CCCccCcCCCCCCCCcEEEccc-CcCCCcchhhhcCCCCCCEEE
Q 045705          170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNT-LSGSIPLSLGNLTNLATLYLDS-NALSGSILNEIGNLKSLYYLE  247 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~  247 (365)
                      .++.++++.|++++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34455555555555555556666666666666665 5544445566666666666665 666644445566666666666


Q ss_pred             cccCcCCCCCcccCCCCCCCC---EEECCCC-cCCCCCCccCcCCCccc-eEEeeccccCCcchhhcCCCCCCCeEECcC
Q 045705          248 LTSNTLSGSIPLPLGNLTNLV---VLELSDN-KLSGLIPPSFGNLTNLT-TLYVYKNSIFGSILDEIGNLKSLSNINLSL  322 (365)
Q Consensus       248 L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  322 (365)
                      +++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ .|++++|.+....+..+.. ++|+.|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            66666663 443 55555555   6666666 66655555566666666 6666666665333333433 5666666666


Q ss_pred             Cc-CCCCchhHhhhc-cCCCcEEEccCccccccCChhhhcCC
Q 045705          323 NK-LNGSIPLSLTNL-TNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       323 N~-l~~~~p~~l~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      |+ +++..+..+..+ + +|+.|++++|++++..+..+.+++
T Consensus       189 n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~~~~~L~  229 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLEHLK  229 (239)
T ss_dssp             CTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCTTCTTCS
T ss_pred             CCCcccCCHHHhhcccc-CCcEEECCCCccccCChhHhccCc
Confidence            63 652223344444 4 566666666666633333344433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.8e-23  Score=205.03  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=72.0

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      +.+++||+++|.+.+..+..+.. ..++.++|+.|.+++..|..|.++++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            46777777777776665544433 25666777777777777777777777777777777777 44444  6777777777


Q ss_pred             ccCcCCCc-chhhhcCCCCCCEEEcccCcCC
Q 045705          225 DSNALSGS-ILNEIGNLKSLYYLELTSNTLS  254 (365)
Q Consensus       225 s~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~  254 (365)
                      ++|.+++. .|..|+.+++|++|++++|.+.
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccc
Confidence            77777642 3466777777777777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.3e-23  Score=184.80  Aligned_cols=186  Identities=26%  Similarity=0.311  Sum_probs=163.0

Q ss_pred             cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705          170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT  249 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  249 (365)
                      .++.++++.++++. +|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+++. +.. ..+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECC
T ss_pred             CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECC
Confidence            34668888899884 454443  6899999999999988889999999999999999999853 333 789999999999


Q ss_pred             cCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705          250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI  329 (365)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  329 (365)
                      +|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|++.+..+..|..+++|+.|+|++|+++ .+
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l  163 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL  163 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence            99998 77888999999999999999999888889999999999999999999888888999999999999999999 55


Q ss_pred             hhH-hhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          330 PLS-LTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       330 p~~-l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      |.. +..++ +|+.|++++|+++ .+|..+..+++|
T Consensus       164 ~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~~~L  197 (290)
T 1p9a_G          164 PAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLL  197 (290)
T ss_dssp             CTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             CHHHhcCcC-CCCEEECCCCcCC-ccChhhcccccC
Confidence            544 45576 7999999999999 889888887765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=2.1e-22  Score=185.46  Aligned_cols=207  Identities=24%  Similarity=0.279  Sum_probs=143.4

Q ss_pred             ccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ...+.|+.|++++|.....++.......++.++++.|.+....+  +..+++|+.|++++|.+.+..+  +..+++|++|
T Consensus       129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  204 (347)
T 4fmz_A          129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF  204 (347)
T ss_dssp             TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcccee
Confidence            34446777777777554555443333455667777777665443  6677777777777777774433  6677777777


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF  302 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  302 (365)
                      ++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.
T Consensus       205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence            777777764433  67777888888888877743 33 67777888888888877754  45777778888888888776


Q ss_pred             CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +.  ..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..|  +..+++|
T Consensus       279 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             CC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hhhhhcc
Confidence            54  4567777888888888888777777777776 68888888888876555  6666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=4.2e-24  Score=193.97  Aligned_cols=199  Identities=16%  Similarity=0.116  Sum_probs=141.0

Q ss_pred             ceeeeccCCCCCCCcchhhhc---cccccceecccccccccch----hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCC
Q 045705          147 LFHVLDFPHTAYSDSMEEAHV---TWPTWLLYLDINAISGSIL----DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNL  219 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~---~~~~~~l~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L  219 (365)
                      .|+.|++++|.+.+..|..+.   ...++.++|+.|.+++..+    ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            478888888888777776542   3356777888888876443    344567788888888888887777788888888


Q ss_pred             cEEEcccCcCCCc--ch--hhhcCCCCCCEEEcccCcCCCCCcc----cCCCCCCCCEEECCCCcCCCCCCccCcCC---
Q 045705          220 ATLYLDSNALSGS--IL--NEIGNLKSLYYLELTSNTLSGSIPL----PLGNLTNLVVLELSDNKLSGLIPPSFGNL---  288 (365)
Q Consensus       220 ~~L~Ls~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---  288 (365)
                      ++|++++|++.+.  ++  ..+..+++|++|++++|.++ .++.    .++.+++|++|++++|.+++..|..+..+   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            8888888876532  22  22357778888888888876 3333    24567788888888888887767666665   


Q ss_pred             CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       289 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ++|++|++++|.++ .+|..+.  ++|++|+|++|++++ +|. +..++ +|+.|++++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~-~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELP-EVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCC-CCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCC-CccEEECcCCCCCC
Confidence            58888888888886 4455553  688888888888884 333 34555 68888888888763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=190.40  Aligned_cols=211  Identities=18%  Similarity=0.139  Sum_probs=167.6

Q ss_pred             ceeeeccCCCCCCCcc----hhhhccccccceecccccccccchhhh--hCCCCCcEEEeeCCcCCCccC----cCCCCC
Q 045705          147 LFHVLDFPHTAYSDSM----EEAHVTWPTWLLYLDINAISGSILDEI--RSLKSLFNLRLGDNTLSGSIP----LSLGNL  216 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~----~~~~~~~~~~~l~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~----~~~~~l  216 (365)
                      .++.+++.++.+....    ........++.++++.|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3566777776664321    112222347889999999999999888  889999999999999997544    345678


Q ss_pred             CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC--C--cccCCCCCCCCEEECCCCcCCCCCCc----cCcCC
Q 045705          217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS--I--PLPLGNLTNLVVLELSDNKLSGLIPP----SFGNL  288 (365)
Q Consensus       217 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l  288 (365)
                      ++|++|++++|.+.+..+..+..+++|++|++++|++.+.  +  +..++.+++|++|++++|.++.. +.    .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcC
Confidence            9999999999999988889999999999999999998642  2  23346889999999999999743 22    35678


Q ss_pred             CccceEEeeccccCCcchhhcCCC---CCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          289 TNLTTLYVYKNSIFGSILDEIGNL---KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       289 ~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ++|++|+|++|.+.+..|..+..+   ++|++|+|++|.++ .+|..+.  + +|++|++++|++++ +|. +..+++|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~-~~~-~~~l~~L  296 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNR-APQ-PDELPEV  296 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCS-CCC-TTSCCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCC-Cch-hhhCCCc
Confidence            999999999999988878777766   69999999999999 7887664  3 79999999999995 343 4555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=1.1e-23  Score=205.95  Aligned_cols=160  Identities=21%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             cccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCc-cCcCCCCCCCCcE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGS-IPLSLGNLTNLAT  221 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~  221 (365)
                      ..+.|++|++++|.+.+..|..+.. ..++.++|+.|.+++..+..|+.+++|++|++++|.+++. .|..+.++++|++
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            3445566666666555444433322 2445555556666555555555666666666666665542 3445555666666


Q ss_pred             EEcccCcCCCcch-hhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705          222 LYLDSNALSGSIL-NEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       222 L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      |++++|.+.+.+| ..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|.
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            6666665322332 455556666666666666655555555556666666666655543222222346777778887777


Q ss_pred             cCC
Q 045705          301 IFG  303 (365)
Q Consensus       301 l~~  303 (365)
                      +.+
T Consensus       208 l~~  210 (549)
T 2z81_A          208 LAR  210 (549)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=5e-23  Score=175.82  Aligned_cols=162  Identities=27%  Similarity=0.274  Sum_probs=102.0

Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL  272 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (365)
                      ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35666666666666555555666666666666666666544555566666666666666666544445566666666666


Q ss_pred             CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|        +|+.|+++.|.++|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSG  179 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT--------TTHHHHHHHHHCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC--------CHHHHHHHHHhCCc
Confidence            6666665555556666666666666666665555556666666666666666653322        46666666666666


Q ss_pred             cCChhhhcCC
Q 045705          353 EIPLELRKHS  362 (365)
Q Consensus       353 ~~p~~l~~l~  362 (365)
                      .+|.+++.++
T Consensus       180 ~ip~~~~~l~  189 (208)
T 2o6s_A          180 VVRNSAGSVA  189 (208)
T ss_dssp             TBBCTTSSBC
T ss_pred             eeeccCcccc
Confidence            6666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=2e-23  Score=204.89  Aligned_cols=213  Identities=22%  Similarity=0.180  Sum_probs=185.0

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCcc--CcCCCCCCCCcEEEc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSI--PLSLGNLTNLATLYL  224 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~--~~~~~~l~~L~~L~L  224 (365)
                      .|+.|++++|.+. .+|.. ....++.++++.|.+.+..+.  ..+++|++|++++|.+++..  +..+.++++|++|++
T Consensus       305 ~L~~L~l~~n~~~-~l~~~-~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  380 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPTL-KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL  380 (570)
T ss_dssp             CCSEEEEESCBCS-SCCBC-BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred             CccEEeeccCccc-ccCcc-cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence            7899999999996 55542 334567888999988876655  77899999999999998554  677889999999999


Q ss_pred             ccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC-
Q 045705          225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF-  302 (365)
Q Consensus       225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-  302 (365)
                      ++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+. 
T Consensus       381 ~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  459 (570)
T 2z63_A          381 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  459 (570)
T ss_dssp             CSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence            99999854 4449999999999999999987655 56889999999999999999888999999999999999999997 


Q ss_pred             CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +.+|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..|..+.++++|+
T Consensus       460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ccchhhhhcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            46788999999999999999999977788888888 799999999999988888899988874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=2.9e-23  Score=181.20  Aligned_cols=198  Identities=18%  Similarity=0.194  Sum_probs=169.0

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceeccccc-ccccchhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINA-ISGSILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~-l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~  221 (365)
                      ...++.|++++|.+.+..+..+.. ..++.++++.|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            347999999999997666544433 367889999997 8877778999999999999999 9999777788999999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCC---EEEcccC-cCCCCCcccCCCCCCCC-EEECCCCcCCCCCCccCcCCCccceEEe
Q 045705          222 LYLDSNALSGSILNEIGNLKSLY---YLELTSN-TLSGSIPLPLGNLTNLV-VLELSDNKLSGLIPPSFGNLTNLTTLYV  296 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L  296 (365)
                      |++++|.+++ +|. +..+++|+   +|++++| .+.+..+..+..+++|+ +|++++|.++...+..+.. ++|+.|++
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence            9999999985 665 88899998   9999999 99877777799999999 9999999999555556665 89999999


Q ss_pred             eccc-cCCcchhhcCCC-CCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705          297 YKNS-IFGSILDEIGNL-KSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       297 ~~n~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      ++|+ +++..+..|..+ ++|+.|++++|+++ .+|..  .+. +|+.|+++++.
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~-~L~~L~l~~~~  237 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLE-HLKELIARNTW  237 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCT-TCSEEECTTC-
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--Hhc-cCceeeccCcc
Confidence            9995 987778889999 99999999999999 66654  455 79999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=1.5e-22  Score=193.98  Aligned_cols=191  Identities=28%  Similarity=0.371  Sum_probs=110.2

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      +.|+.|++++|.+.+..+ ......++.++++.|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|+++
T Consensus       199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  273 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  273 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence            345555555555544333 11222344455555555532  245555666666666666654433  5556666666666


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI  305 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  305 (365)
                      +|.+++..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..|  +..+++|+.|++++|.+.+. 
T Consensus       274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-  346 (466)
T 1o6v_A          274 ANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-  346 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred             CCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence            666654332  5566666666666666664322  5566666666666666665533  55666666666666666554 


Q ss_pred             hhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          306 LDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       306 ~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                       ..+..+++|+.|++++|++++..|  +..++ +|+.|++++|++++
T Consensus       347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          347 -SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTN  389 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred             -hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccC
Confidence             356666677777777777765554  55555 57777777776664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=2.1e-22  Score=182.50  Aligned_cols=193  Identities=26%  Similarity=0.311  Sum_probs=162.6

Q ss_pred             cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ..+.|+.|++++|.+.. ++.......++.++|+.|.+++..+  +..+++|++|++++|.+++. + .+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            34579999999999865 4544444577889999999987655  89999999999999999854 3 688999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++|.+++. + .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+.+
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            999999863 3 38999999999999999985433  8889999999999999986533  8899999999999999976


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ..+  +..+++|++|++++|.+++. + .+..++ +|+.|++++|++++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~-~-~l~~l~-~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDV-S-PLANTS-NLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBC-G-GGTTCT-TCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCcc-c-cccCCC-CCCEEEccCCeeec
Confidence            644  78899999999999999954 4 367777 79999999999984

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.2e-24  Score=204.50  Aligned_cols=193  Identities=19%  Similarity=0.150  Sum_probs=164.1

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++||+++|.+.+..+.    ..++.++++.|.+++..+.   .+++|+.|++++|.+++..|..+.++++|++
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred             cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence            44556788899999888654332    4667888999999877664   4588999999999999988999999999999


Q ss_pred             EEcccCcCCCcchhhhc-CCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705          222 LYLDSNALSGSILNEIG-NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      |++++|.+++..|..+. .+++|++|+|++|.+++. + ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.
T Consensus       149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred             EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCc
Confidence            99999999988888886 799999999999999965 3 34468999999999999997544 58899999999999999


Q ss_pred             cCCcchhhcCCCCCCCeEECcCCcCC-CCchhHhhhccCCCcEEEcc
Q 045705          301 IFGSILDEIGNLKSLSNINLSLNKLN-GSIPLSLTNLTNSLEVVCLS  346 (365)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~~~~~L~~L~l~  346 (365)
                      +++ +|..+..+++|+.|++++|.+. +.+|..+..++ .|+.++++
T Consensus       226 l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~-~L~~l~~~  270 (487)
T 3oja_A          226 LVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQ  270 (487)
T ss_dssp             CCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH-HHHHHHHH
T ss_pred             Ccc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC-CCcEEecc
Confidence            975 6777899999999999999998 67778888777 68888886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=6e-24  Score=193.55  Aligned_cols=204  Identities=19%  Similarity=0.161  Sum_probs=169.7

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+..+    ...++.++++.|.+++..+..   +++|+.|++++|.+++..+..+..+++|++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  148 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred             hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence            4455678899999998865432    246678888999998766543   578999999999999888889999999999


Q ss_pred             EEcccCcCCCcchhhh-cCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccc
Q 045705          222 LYLDSNALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNS  300 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  300 (365)
                      |++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++. |..+..+++|+.|++++|.
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCc
Confidence            9999999997777777 4789999999999999854 33 34589999999999999965 4458899999999999999


Q ss_pred             cCCcchhhcCCCCCCCeEECcCCcCC-CCchhHhhhccCCCcEEEccCc-cccccCChh
Q 045705          301 IFGSILDEIGNLKSLSNINLSLNKLN-GSIPLSLTNLTNSLEVVCLSSN-HIVGEIPLE  357 (365)
Q Consensus       301 l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~~~~~L~~L~l~~n-~l~~~~p~~  357 (365)
                      +. .+|..+..+++|+.|++++|+++ +.+|..+..++ .|+.|+++++ .++|..|..
T Consensus       226 l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             CC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHHHSSSSCC
T ss_pred             cc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhccCCchhc
Confidence            96 46778999999999999999999 77888888888 7999999954 566665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=1.1e-22  Score=198.86  Aligned_cols=213  Identities=21%  Similarity=0.170  Sum_probs=155.6

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      +.+++||+++|.+.+..|..+.. ..++.++|+.|.+++..|..|..+++|++|++++|.+++..+..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            56888888888887665554433 35677888888888777788888888888888888888776666888888888888


Q ss_pred             ccCcCCC-cchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705          225 DSNALSG-SILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF  302 (365)
Q Consensus       225 s~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  302 (365)
                      ++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|+++.|.+.
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            8888875 245677888888888888887443443 56778888888888888888777888888888888888888774


Q ss_pred             CcchhhcCCCCCCCeEECcCCcCCCCc--hhHhhhccCCCcEEEccCccccccCChhh
Q 045705          303 GSILDEIGNLKSLSNINLSLNKLNGSI--PLSLTNLTNSLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~--p~~l~~~~~~L~~L~l~~n~l~~~~p~~l  358 (365)
                      ......+..+++|++|++++|.+++..  |..+.....+|+.|++++|.+++..+..+
T Consensus       186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence            433333456788888888888887531  22222323368888888888876655444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1e-21  Score=180.88  Aligned_cols=209  Identities=24%  Similarity=0.317  Sum_probs=171.9

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+..+ ......++.++++.|......+ .+..+++|++|++++|.+.+..+  +..+++|++
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            3445579999999999866543 3334467778888886554443 48889999999999999985544  788999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            9999999985433  8889999999999999985443  7889999999999999986643  88999999999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+.  ..+..+++|++|++++|.+++ ++ .+..++ +|+.|++++|++++..|..++++++|+
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCC-CCCEEECcCCcCCCcChhHhhccccCC
Confidence            764  578899999999999999994 44 466777 799999999999999999999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.88  E-value=9.9e-22  Score=188.33  Aligned_cols=206  Identities=30%  Similarity=0.322  Sum_probs=173.8

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+. +.......++.++++.|.+.+..+  ++.+++|+.|++++|.+++.  ..+..+++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  247 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD  247 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             hccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCE
Confidence            44556899999999998654 333333467889999999987666  77899999999999999854  46788999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred             EECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence            9999999986554  8899999999999999996543  8899999999999999997643  88999999999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..+  +..+++|+.|++++|.+++.  ..+..++ +|+.|++++|++++..|  +..+++|.
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT-NINWLSAGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred             CCchh--hccCccCCEeECCCCccCCc--hhhccCC-CCCEEeCCCCccCccch--hhcCCCCC
Confidence            88765  77899999999999999954  3677777 79999999999998777  78887763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.2e-22  Score=170.11  Aligned_cols=195  Identities=22%  Similarity=0.179  Sum_probs=156.7

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      .++.+++.+.. +|... ...++.++++.|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        11 ~v~c~~~~l~~-~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTS-VPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccC-CCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            34555555532 22222 22456677778888777777788999999999999999977777789999999999999999


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      ++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence            97777778999999999999999997777778999999999999999998877789999999999999997753      


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhh
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l  358 (365)
                       .++.|+.|+++.|.++|.+|..++.++.     +...|...+..+..+
T Consensus       163 -~~~~l~~L~~~~n~~~g~ip~~~~~l~~-----~~~~C~~~~~~~~~~  205 (208)
T 2o6s_A          163 -TCPGIRYLSEWINKHSGVVRNSAGSVAP-----DSAKCSGSGKPVRSI  205 (208)
T ss_dssp             -CTTTTHHHHHHHHHCTTTBBCTTSSBCT-----TCSBBTTTCCBGGGC
T ss_pred             -CCCCHHHHHHHHHhCCceeeccCccccC-----CccccccCCCcceee
Confidence             4668999999999999999998887763     444555554444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=1.7e-21  Score=189.63  Aligned_cols=188  Identities=24%  Similarity=0.256  Sum_probs=158.3

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .++.|++++|.+.+ +|.... ..++.++|+.|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            68999999999976 565443 56788999999999 456   457999999999999996 666 655  999999999


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++|++++|.+++ +|. |.  ++|+.|+|++|.++ .+|
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            99986 665   68999999999999995 555   57899999999999997 555 66  89999999999997 445


Q ss_pred             hhcCCCCCC-------CeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          307 DEIGNLKSL-------SNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       307 ~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      . +..  +|       +.|+|++|.|+ .+|..++.++ +|+.|++++|++++.+|..+.++.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhh
Confidence            5 554  77       99999999999 7999998887 799999999999999999888753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=2.7e-21  Score=184.39  Aligned_cols=199  Identities=21%  Similarity=0.274  Sum_probs=101.8

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+ +|...  ..++.++++.|.+++ +| .++.+++|++|++++|.+++ +|..   .++|++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             cCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence            4445567777777777754 33322  255667777777775 34 46677777777777776664 2221   134555


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC-----------------CCCCCCEEECCCCcCCC--CCC
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----------------NLTNLVVLELSDNKLSG--LIP  282 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----------------~l~~L~~L~L~~n~l~~--~~~  282 (365)
                      |++++|.+. .+| .++.+++|++|++++|++.+ +|..+.                 .+++|++|++++|.+++  ..|
T Consensus       220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~  296 (454)
T 1jl5_A          220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP  296 (454)
T ss_dssp             EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC
T ss_pred             EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC
Confidence            555555554 334 25555555555555555542 222110                 11334444444444443  111


Q ss_pred             ccCc-------------CC-CccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705          283 PSFG-------------NL-TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN  348 (365)
Q Consensus       283 ~~l~-------------~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n  348 (365)
                      ..+.             .+ ++|+.|++++|++.+ +|..   +++|++|++++|.++ .+|.   .++ +|++|++++|
T Consensus       297 ~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-~L~~L~L~~N  367 (454)
T 1jl5_A          297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-NLKQLHVEYN  367 (454)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSS
T ss_pred             CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-hccEEECCCC
Confidence            1111             11 245555555555543 2221   345566666666665 4444   122 5666666666


Q ss_pred             cccc--cCChhhhcC
Q 045705          349 HIVG--EIPLELRKH  361 (365)
Q Consensus       349 ~l~~--~~p~~l~~l  361 (365)
                      ++++  .+|.+++++
T Consensus       368 ~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          368 PLREFPDIPESVEDL  382 (454)
T ss_dssp             CCSSCCCCCTTCCEE
T ss_pred             CCCcCCCChHHHHhh
Confidence            6665  556555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=1e-20  Score=180.51  Aligned_cols=198  Identities=21%  Similarity=0.127  Sum_probs=148.1

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+. + ......++.++++.|.+++. +  ++.+++|++|++++|.+++. +  ++.+++|++
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTY  131 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred             hcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCE
Confidence            44556778888888877664 2 22223566777777877764 2  67778888888888888753 3  777788888


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++|++++|.+++. |  ++.+++|+.|++++|.+
T Consensus       132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcC
Confidence            88888888753   2677788888888888555444  467788889999999988874 3  77888999999999988


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      ++.   .+..+++|+.|++++|++++ +|  +..++ +|+.|++++|++++..+..+.++.
T Consensus       204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~  257 (457)
T 3bz5_A          204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLT  257 (457)
T ss_dssp             SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCC
T ss_pred             Cee---ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCC
Confidence            765   37888999999999999995 66  66776 799999999999976655555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.9e-23  Score=195.50  Aligned_cols=213  Identities=18%  Similarity=0.216  Sum_probs=146.4

Q ss_pred             cccccceeeeccCCCC---CCCcchhhh--------ccccccceecccccccc----cchhhhhCCCCCcEEEeeCCcCC
Q 045705          142 VMFSMLFHVLDFPHTA---YSDSMEEAH--------VTWPTWLLYLDINAISG----SILDEIRSLKSLFNLRLGDNTLS  206 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~---l~~~~~~~~--------~~~~~~~l~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~i~  206 (365)
                      +...+.|++|+|++|.   +.+.+|...        ....++.++|+.|.++.    .++..+..+++|++|++++|.++
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            3445678888888754   333444333        22356677888888876    46667777888888888888876


Q ss_pred             CccCcCCC----CC---------CCCcEEEcccCcCC-Ccch---hhhcCCCCCCEEEcccCcCCC-----CCcccCCCC
Q 045705          207 GSIPLSLG----NL---------TNLATLYLDSNALS-GSIL---NEIGNLKSLYYLELTSNTLSG-----SIPLPLGNL  264 (365)
Q Consensus       207 ~~~~~~~~----~l---------~~L~~L~Ls~n~l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l  264 (365)
                      ...+..+.    .+         ++|++|++++|.++ ..++   ..+..+++|++|++++|.+..     ..+..+..+
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence            43333332    23         78888888888876 3334   456677888888888887762     233366777


Q ss_pred             CCCCEEECCCCcCC----CCCCccCcCCCccceEEeeccccCCc----chhhc--CCCCCCCeEECcCCcCCC----Cch
Q 045705          265 TNLVVLELSDNKLS----GLIPPSFGNLTNLTTLYVYKNSIFGS----ILDEI--GNLKSLSNINLSLNKLNG----SIP  330 (365)
Q Consensus       265 ~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~L~~N~l~~----~~p  330 (365)
                      ++|+.|++++|.++    ..+|..+..+++|+.|+|++|.+.+.    ++..+  ..+++|++|+|++|.+++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            88888888888875    44566777788888888888887664    45555  337888888888888885    377


Q ss_pred             hHhh-hccCCCcEEEccCccccccCC
Q 045705          331 LSLT-NLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       331 ~~l~-~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      ..+. .++ +|++|++++|++++..|
T Consensus       296 ~~l~~~l~-~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          296 TVIDEKMP-DLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHCT-TCCEEECTTSBSCTTSH
T ss_pred             HHHHhcCC-CceEEEccCCcCCcchh
Confidence            7763 355 68888888888886553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=3.2e-21  Score=183.88  Aligned_cols=198  Identities=21%  Similarity=0.298  Sum_probs=119.2

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|+.|++++|.+.+ +|...  ..++.++++.|.++ .+| .++.+++|++|++++|.+++ +|..   +++|++
T Consensus       191 ~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  261 (454)
T 1jl5_A          191 LQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEA  261 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCE
T ss_pred             ccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCE
Confidence            3445567777888877765 33221  35567777788777 455 37778888888888888874 3432   356777


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC--CCcccC-------------CCC-CCCCEEECCCCcCCCCCCccC
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG--SIPLPL-------------GNL-TNLVVLELSDNKLSGLIPPSF  285 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~-------------~~l-~~L~~L~L~~n~l~~~~~~~l  285 (365)
                      |++++|.+++ +|..   .++|++|++++|.+++  ..|..+             ..+ ++|++|++++|.+++ +|.. 
T Consensus       262 L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~-  335 (454)
T 1jl5_A          262 LNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL-  335 (454)
T ss_dssp             EECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC-
T ss_pred             EECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc-
Confidence            7777777764 3432   2556666666666654  222111             122 478899999998886 4443 


Q ss_pred             cCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC--CchhHhhhc-------------cCCCcEEEccCccc
Q 045705          286 GNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG--SIPLSLTNL-------------TNSLEVVCLSSNHI  350 (365)
Q Consensus       286 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~p~~l~~~-------------~~~L~~L~l~~n~l  350 (365)
                        +++|+.|++++|.++. +|.   .+++|++|++++|++++  .+|..+..+             + +|+.|++++|++
T Consensus       336 --~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l  408 (454)
T 1jl5_A          336 --PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNPL  408 (454)
T ss_dssp             --CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             --CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC-cCCEEECCCCcC
Confidence              5889999999999975 454   47899999999999998  788887766             5 799999999999


Q ss_pred             cc--cCChhhhcC
Q 045705          351 VG--EIPLELRKH  361 (365)
Q Consensus       351 ~~--~~p~~l~~l  361 (365)
                      ++  .+|.++..+
T Consensus       409 ~~~~~iP~sl~~L  421 (454)
T 1jl5_A          409 REFPDIPESVEDL  421 (454)
T ss_dssp             -------------
T ss_pred             CccccchhhHhhe
Confidence            97  888887765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.86  E-value=1.3e-20  Score=179.96  Aligned_cols=202  Identities=17%  Similarity=0.123  Sum_probs=156.4

Q ss_pred             cccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcE
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLAT  221 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~  221 (365)
                      +...+.|++|++++|.+.+. + ......++.++++.|.+++. +  ++.+++|++|++++|.+++.   .++.+++|++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~  152 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTE  152 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCE
T ss_pred             cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCE
Confidence            45566899999999999774 3 22234677889999999874 3  78899999999999999964   3788999999


Q ss_pred             EEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          222 LYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       222 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      |++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++
T Consensus       153 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          153 LDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             EECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC
T ss_pred             EECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc
Confidence            999999654444  57889999999999999986 44  78889999999999999875   488899999999999999


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhcc------CCCcEEEccCccccccCChhhhcCCCC
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT------NSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~------~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      ++. |  +..+++|+.|++++|.+++..+..+..+.      ++|+.|++++|.+.+.+|  ++.|++|
T Consensus       225 ~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L  288 (457)
T 3bz5_A          225 TEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKI  288 (457)
T ss_dssp             SCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred             ccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccC
Confidence            774 4  78889999999999999965433332221      135566677777666666  3445544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.1e-20  Score=171.20  Aligned_cols=198  Identities=28%  Similarity=0.367  Sum_probs=162.2

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      .+.+..+.+.+..... .-..++.++++.|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        23 ~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           23 KIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHHTTCSSTTSEECHH-HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHHhCCCCcCceecHH-HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence            3456666665543322 223567889999998853 3 68899999999999999996554  89999999999999999


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      ++ + ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..+  +
T Consensus        98 ~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l  169 (308)
T 1h6u_A           98 KN-V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L  169 (308)
T ss_dssp             SC-C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CC-c-hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence            85 3 479999999999999999985 44 38899999999999999987643  8899999999999999976544  8


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      ..+++|+.|++++|.+++ ++. +..++ +|+.|++++|++++..  .+..+++|+
T Consensus       170 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~L~~N~l~~~~--~l~~l~~L~  220 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISD-ISP-LASLP-NLIEVHLKNNQISDVS--PLANTSNLF  220 (308)
T ss_dssp             TTCTTCCEEECCSSCCCC-CGG-GGGCT-TCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred             cCCCCCCEEECCCCccCc-Chh-hcCCC-CCCEEEccCCccCccc--cccCCCCCC
Confidence            899999999999999994 443 67777 7999999999999554  378888774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.3e-22  Score=185.97  Aligned_cols=213  Identities=17%  Similarity=0.182  Sum_probs=163.8

Q ss_pred             cccceeeeccCCCCCCCc-chhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCC-cCCCc-cCcCCCCCCCC
Q 045705          144 FSMLFHVLDFPHTAYSDS-MEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDN-TLSGS-IPLSLGNLTNL  219 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~-~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~i~~~-~~~~~~~l~~L  219 (365)
                      ..+.|+.|++++|.+.+. ++..... ..++.++++.|.+++..+..++.+++|++|++++| .+++. ++..+.++++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            456789999999988655 5544333 36778888999988888888888999999999998 67642 56667788999


Q ss_pred             cEEEcccC-cCCCc-chhhhcCCC-CCCEEEcccC--cCC-CCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCCCccc
Q 045705          220 ATLYLDSN-ALSGS-ILNEIGNLK-SLYYLELTSN--TLS-GSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNLTNLT  292 (365)
Q Consensus       220 ~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  292 (365)
                      ++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            99999999 88754 567788888 9999999999  444 3456667788999999999998 6666777888899999


Q ss_pred             eEEeeccc-cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhc
Q 045705          293 TLYVYKNS-IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRK  360 (365)
Q Consensus       293 ~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~  360 (365)
                      +|++++|. +.+.....+..+++|+.|++++| ++...-..+.   .+++.|++++|++++..|..+++
T Consensus       251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccccCCcccc
Confidence            99999984 43333346788899999999999 6543333332   24667789999999988887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.4e-22  Score=185.73  Aligned_cols=205  Identities=18%  Similarity=0.190  Sum_probs=160.1

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceeccccccccc-chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGS-ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      ..++.|++++|.+.+..+.......++.++++.|.+++. .+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            568888999988887777655555777888888888766 7778888899999999999888777778888899999999


Q ss_pred             ccC-cCCC-cchhhhcCCCCCCEEEcccC-cCCCC-CcccCCCCC-CCCEEECCCC--cCC-CCCCccCcCCCccceEEe
Q 045705          225 DSN-ALSG-SILNEIGNLKSLYYLELTSN-TLSGS-IPLPLGNLT-NLVVLELSDN--KLS-GLIPPSFGNLTNLTTLYV  296 (365)
Q Consensus       225 s~n-~l~~-~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L  296 (365)
                      ++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            998 5764 25666788899999999998 77743 456677788 8999999998  444 334566677889999999


Q ss_pred             eccc-cCCcchhhcCCCCCCCeEECcCCc-CCCCchhHhhhccCCCcEEEccCccccc
Q 045705          297 YKNS-IFGSILDEIGNLKSLSNINLSLNK-LNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       297 ~~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ++|. +++..+..+..+++|++|++++|. ++......+..++ +|+.|++++| ++.
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~  285 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPD  285 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCT
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCH
Confidence            9998 766777788888999999999985 4323233566676 7999999988 553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=8.7e-21  Score=175.75  Aligned_cols=177  Identities=23%  Similarity=0.170  Sum_probs=116.2

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccchhhhh-CCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIR-SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      ++++++++.+.. +|... ...++.++|+.|++++..+..+. .+++|+.|+|++|.|++..+..|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~-iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSS-CCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            468888888844 44332 22345677777777766666665 6777777777777777666666777777777777777


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccC---cCCCccceEEeeccccCCc
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSF---GNLTNLTTLYVYKNSIFGS  304 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~  304 (365)
                      .++...+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|.+++..+..|   ..+++|+.|+|++|.+...
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            7765555566777777777777777776656667777777777777777765544444   4566677777777777655


Q ss_pred             chhhcCCCCC--CCeEECcCCcCCC
Q 045705          305 ILDEIGNLKS--LSNINLSLNKLNG  327 (365)
Q Consensus       305 ~~~~l~~l~~--L~~L~L~~N~l~~  327 (365)
                      .+..+..++.  ++.|+|++|++..
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CHHHhhhccHhhcceEEecCCCccC
Confidence            5555555554  3667777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=1.9e-20  Score=161.26  Aligned_cols=153  Identities=22%  Similarity=0.270  Sum_probs=137.4

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      +.++++.++++. +|..+.  ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            457778888874 455443  68999999999999888889999999999999999999888999999999999999999


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  327 (365)
                      .++...+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9996666678899999999999999999989999999999999999999988888889999999999999999974

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.3e-22  Score=189.73  Aligned_cols=223  Identities=16%  Similarity=0.161  Sum_probs=169.1

Q ss_pred             cccccceeeeccCCCCCCCcchhhhc-----cccccceecccc---cccccchhhh-------hCCCCCcEEEeeCCcCC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHV-----TWPTWLLYLDIN---AISGSILDEI-------RSLKSLFNLRLGDNTLS  206 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~l~L~~n---~l~~~~~~~~-------~~l~~L~~L~ls~n~i~  206 (365)
                      +...+.|+.|++++|.+.+..+..+.     ...++.++|+.|   .+++.+|..+       ..+++|++|++++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            44455789999999998776554321     235677888774   4555666555       68899999999999998


Q ss_pred             C----ccCcCCCCCCCCcEEEcccCcCCCcchhhhc----CC---------CCCCEEEcccCcCC-CCCc---ccCCCCC
Q 045705          207 G----SIPLSLGNLTNLATLYLDSNALSGSILNEIG----NL---------KSLYYLELTSNTLS-GSIP---LPLGNLT  265 (365)
Q Consensus       207 ~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~  265 (365)
                      +    .++..+..+++|++|+|++|.++...+..+.    .+         ++|++|++++|.+. +.++   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            6    4677788899999999999998644444333    33         89999999999987 3334   3566788


Q ss_pred             CCCEEECCCCcCCC-----CCCccCcCCCccceEEeeccccC----CcchhhcCCCCCCCeEECcCCcCCCC----chhH
Q 045705          266 NLVVLELSDNKLSG-----LIPPSFGNLTNLTTLYVYKNSIF----GSILDEIGNLKSLSNINLSLNKLNGS----IPLS  332 (365)
Q Consensus       266 ~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~N~l~~~----~p~~  332 (365)
                      +|++|++++|.++.     ..+..+..+++|+.|+|++|.++    ..++..+..+++|++|+|++|.+++.    ++..
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  267 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  267 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence            99999999998872     23447788899999999999986    45677888899999999999999865    4555


Q ss_pred             hhh--ccCCCcEEEccCccccc----cCChhh-hcCCCCC
Q 045705          333 LTN--LTNSLEVVCLSSNHIVG----EIPLEL-RKHSSLV  365 (365)
Q Consensus       333 l~~--~~~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~  365 (365)
                      +..  ++ +|+.|++++|.+++    .+|..+ .++++|+
T Consensus       268 l~~~~~~-~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          268 FSKLENI-GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             HHTCSSC-CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             HhhccCC-CeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            533  55 79999999999997    488877 5577763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=2.5e-20  Score=167.44  Aligned_cols=187  Identities=28%  Similarity=0.356  Sum_probs=137.8

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      .+.+..+.+.+..+.. ....++.++++.|.+...  +.+..+++|+.|++++|.+++..+  +.++++|++|++++|.+
T Consensus        28 ~~~l~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           28 KDNLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHHTTCSCTTSEECHH-HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHHhcCCCcccccchh-hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            3455555554433221 222445667777776643  246778888888888888886544  78888888888888888


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      ++  +..+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..+  +
T Consensus       103 ~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l  174 (291)
T 1h6t_A          103 KD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  174 (291)
T ss_dssp             CC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence            74  33488888888888888888753  4577888888888888888865  577888888888888888876644  7


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ..+++|+.|++++|.++ .++. +..++ +|+.|++++|+++.
T Consensus       175 ~~l~~L~~L~L~~N~i~-~l~~-l~~l~-~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHIS-DLRA-LAGLK-NLDVLELFSQECLN  214 (291)
T ss_dssp             TTCTTCCEEECCSSCCC-BCGG-GTTCT-TCSEEEEEEEEEEC
T ss_pred             cCCCccCEEECCCCcCC-CChh-hccCC-CCCEEECcCCcccC
Confidence            88888888888888888 4553 66676 68888888888874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=1.9e-20  Score=161.18  Aligned_cols=153  Identities=22%  Similarity=0.238  Sum_probs=137.0

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA  228 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  228 (365)
                      +.++.+++.+.. +|.... ..++.++|+.|+++...+..|..+++|+.|++++|.+++..|..|.++++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~-iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCc-CCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            468889998854 444332 466889999999998888899999999999999999998889999999999999999999


Q ss_pred             CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      ++...+..|..+++|++|+|++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+..
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            997666778999999999999999998888999999999999999999998888889999999999999998854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=5e-22  Score=184.20  Aligned_cols=212  Identities=21%  Similarity=0.177  Sum_probs=157.9

Q ss_pred             cccccceeeeccCCCCCCCcch----hhhccc--cccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccC
Q 045705          142 VMFSMLFHVLDFPHTAYSDSME----EAHVTW--PTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIP  210 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~----~~~~~~--~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~  210 (365)
                      ......|+.||+++|.+.+..+    ..+...  .++.++|+.|.+++..+..+..+     ++|++|++++|.+++..+
T Consensus        18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3445569999999999977665    333322  57889999999998888777765     899999999999986665


Q ss_pred             cC----CCCC-CCCcEEEcccCcCCCcchhhh----cC-CCCCCEEEcccCcCCCCCcc----cCCCCC-CCCEEECCCC
Q 045705          211 LS----LGNL-TNLATLYLDSNALSGSILNEI----GN-LKSLYYLELTSNTLSGSIPL----PLGNLT-NLVVLELSDN  275 (365)
Q Consensus       211 ~~----~~~l-~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~----~~~~l~-~L~~L~L~~n  275 (365)
                      ..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+......    .+..++ +|++|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            54    3344 799999999999987666554    34 36899999999998854333    334554 8999999999


Q ss_pred             cCCCCCCccCc----CC-CccceEEeeccccCCc----chhhcCC-CCCCCeEECcCCcCCCCchhHh----hhccCCCc
Q 045705          276 KLSGLIPPSFG----NL-TNLTTLYVYKNSIFGS----ILDEIGN-LKSLSNINLSLNKLNGSIPLSL----TNLTNSLE  341 (365)
Q Consensus       276 ~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~N~l~~~~p~~l----~~~~~~L~  341 (365)
                      .+++..+..+.    .+ ++|++|+|++|.+.+.    ++..+.. .++|++|+|++|.+++..+..+    ..++ +|+
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~-~L~  256 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK-HLQ  256 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT-TCS
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC-Ccc
Confidence            99877654443    44 5899999999999763    3445544 4599999999999986555333    3345 799


Q ss_pred             EEEccCccccccC
Q 045705          342 VVCLSSNHIVGEI  354 (365)
Q Consensus       342 ~L~l~~n~l~~~~  354 (365)
                      .|++++|.+.+..
T Consensus       257 ~L~L~~n~l~~i~  269 (362)
T 3goz_A          257 TVYLDYDIVKNMS  269 (362)
T ss_dssp             EEEEEHHHHTTCC
T ss_pred             EEEeccCCccccC
Confidence            9999999965433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=9.9e-21  Score=187.65  Aligned_cols=180  Identities=26%  Similarity=0.267  Sum_probs=134.3

Q ss_pred             cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705          170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT  249 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  249 (365)
                      .++.++|++|+|+...+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            34667777777776667778888888888888888887777788888888888888888886666778888888888888


Q ss_pred             cCcCCCCCcccCCCCCCCCEEECCCCcCCCC-CCccCcCCCccceEEeeccccCCcchhhcCCCCC----CCeEECcCCc
Q 045705          250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGL-IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKS----LSNINLSLNK  324 (365)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~L~~N~  324 (365)
                      +|.+++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+..+..+.+    ...++++.|.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            8888866666788888888888888888754 5677778888888888888887776666654433    3467788888


Q ss_pred             CCCCchhHhhhccCCCcEEEccCcccc
Q 045705          325 LNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       325 l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ++ .++....... .++.+++++|..+
T Consensus       213 l~-~i~~~~~~~~-~~~~l~l~~n~~~  237 (635)
T 4g8a_A          213 MN-FIQPGAFKEI-RLHKLTLRNNFDS  237 (635)
T ss_dssp             CC-EECTTTTTTC-EEEEEEEESCCSS
T ss_pred             cc-ccCcccccch-hhhhhhhhccccc
Confidence            87 4444433433 4667777777554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=2.4e-20  Score=160.63  Aligned_cols=156  Identities=22%  Similarity=0.212  Sum_probs=138.0

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS  250 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  250 (365)
                      +.++++.|.++. +|..+.  ..++.|++++|.+++..+ ..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            468888898885 565443  467899999999997754 4588999999999999999977778899999999999999


Q ss_pred             CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705          251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      |.+++..+..+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++....+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99998888889999999999999999999989999999999999999999998889999999999999999999986544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=2.3e-20  Score=185.00  Aligned_cols=179  Identities=24%  Similarity=0.147  Sum_probs=151.9

Q ss_pred             ccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCC
Q 045705          177 DINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGS  256 (365)
Q Consensus       177 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  256 (365)
                      +..+++ .+|..+.  +++++|||++|.|++..+.+|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++.
T Consensus        39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            333444 3454332  5799999999999988888999999999999999999977788899999999999999999977


Q ss_pred             CcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcCCCCCCCeEECcCCcCCCCchhHhhh
Q 045705          257 IPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN  335 (365)
Q Consensus       257 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  335 (365)
                      .+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+... .|..+..+++|++|++++|.+++..+..+..
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence            777899999999999999999988888899999999999999999764 5788899999999999999999776776665


Q ss_pred             cc---CCCcEEEccCccccccCChhh
Q 045705          336 LT---NSLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       336 ~~---~~L~~L~l~~n~l~~~~p~~l  358 (365)
                      +.   .....++++.|.++...|..+
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~~~  221 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPGAF  221 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred             hhhhhhhhhhhhcccCcccccCcccc
Confidence            44   234579999999986555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=159.80  Aligned_cols=155  Identities=21%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             eeeeccCCCCCCCcchhhhccccccceecccccccccch-hhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSIL-DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      -+.+++++|.+.. +|... ...++.++|+.|++++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        13 ~~~l~~s~n~l~~-iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCccc-CccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            3479999999954 55433 3345789999999998755 5688999999999999999988888999999999999999


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS  304 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (365)
                      |.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+...
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999988888899999999999999999988899999999999999999999999899999999999999999998654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=1.4e-20  Score=174.34  Aligned_cols=176  Identities=26%  Similarity=0.252  Sum_probs=135.5

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCC-CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG-NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS  250 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  250 (365)
                      +.++++.++++. +|..+.  ..++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            456777777774 454443  4578888888888877777776 888888888888888876677788888888888888


Q ss_pred             CcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc---CCCCCCCeEECcCCcCCC
Q 045705          251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI---GNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N~l~~  327 (365)
                      |.+....+..|..+++|++|+|++|.+++..+..|.++++|+.|+|++|.++...+..|   ..+++|+.|+|++|.|++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            88886666678888888888888888887778888888888888888888876655555   567888888888888884


Q ss_pred             CchhHhhhccCC--CcEEEccCcccc
Q 045705          328 SIPLSLTNLTNS--LEVVCLSSNHIV  351 (365)
Q Consensus       328 ~~p~~l~~~~~~--L~~L~l~~n~l~  351 (365)
                      ..+..+..++ .  ++.|++++|++.
T Consensus       178 l~~~~~~~l~-~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLP-AWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred             cCHHHhhhcc-HhhcceEEecCCCcc
Confidence            4445566555 3  477888888775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=1.3e-19  Score=156.95  Aligned_cols=155  Identities=26%  Similarity=0.233  Sum_probs=136.5

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      +.++++.++++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            45777777776 4454443  88999999999999888999999999999999999998766677899999999999999


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      .+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            999777777899999999999999999 668888999999999999999988877889999999999999999986543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=2e-19  Score=155.83  Aligned_cols=154  Identities=27%  Similarity=0.264  Sum_probs=134.4

Q ss_pred             eeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      .+.++.+++.+ ..+|... ...++.++|+.|.+++..+..|..+++|++|++++|.++...+..|.++++|++|+|++|
T Consensus        21 ~~~v~c~~~~l-~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCc-CccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            45688888888 4455433 256788999999999988999999999999999999998777778899999999999999


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS  304 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (365)
                      .+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+...
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999777777899999999999999999 7788889999999999999999988778899999999999999998654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=2.9e-20  Score=157.24  Aligned_cols=154  Identities=18%  Similarity=0.305  Sum_probs=130.9

Q ss_pred             hCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCE
Q 045705          190 RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVV  269 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  269 (365)
                      +.+++|+.|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            55678999999999998 555 68889999999999997753  457889999999999999999777888999999999


Q ss_pred             EECCCCcCCCCCCccCcCCCccceEEeeccc-cCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705          270 LELSDNKLSGLIPPSFGNLTNLTTLYVYKNS-IFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN  348 (365)
Q Consensus       270 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n  348 (365)
                      |++++|.+++..+..++.+++|++|++++|. +.+ ++ .+..+++|++|++++|.++ .++ .+..++ +|+.|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~-~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFP-KLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCS-SCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc-ChH-HhccCC-CCCEEEeeCc
Confidence            9999999998778889999999999999998 644 44 6888999999999999999 455 677787 7999999999


Q ss_pred             cccc
Q 045705          349 HIVG  352 (365)
Q Consensus       349 ~l~~  352 (365)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            9874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.4e-19  Score=177.89  Aligned_cols=187  Identities=28%  Similarity=0.370  Sum_probs=104.5

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      .++++.+.+.+..+. .....++.++++.|.+...  ..+..+++|+.|+|++|.+++..+  +..+++|++|+|++|.+
T Consensus        25 ~l~l~~~~i~~~~~~-~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           25 KDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHTTCSCTTSEECH-HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HHhccCCCcccccch-hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            344455444433322 1122334455555555432  235556666666666666664433  55666666666666666


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      .+ + ..+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+.+..+  +
T Consensus       100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l  171 (605)
T 1m9s_A          100 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L  171 (605)
T ss_dssp             CC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred             CC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence            53 2 245666666666666666653 2 3355666666666666666644  455566666666666666655444  5


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      ..+++|+.|+|++|.+++ +| .+..++ +|+.|+|++|++++
T Consensus       172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~-~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISD-LR-ALAGLK-NLDVLELFSQECLN  211 (605)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCT-TCSEEECCSEEEEC
T ss_pred             ccCCCCCEEECcCCCCCC-Ch-HHccCC-CCCEEEccCCcCcC
Confidence            666666666666666663 33 345555 56666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=6.2e-19  Score=173.61  Aligned_cols=193  Identities=21%  Similarity=0.221  Sum_probs=103.7

Q ss_pred             ccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      .+.|++||+++|.+++ +|.  ....++.++|+.|.+++. |.   .+++|+.|++++|.++. +|..   +++|++|++
T Consensus        80 l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L  148 (622)
T 3g06_A           80 PPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV  148 (622)
T ss_dssp             CTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             CCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence            4567888888887754 443  334566777777877753 32   45677788888887774 4432   467888888


Q ss_pred             ccCcCCCcchhhhcC-----------------CCCCCEEEcccCcCCCCCcccCCC-----------------CCCCCEE
Q 045705          225 DSNALSGSILNEIGN-----------------LKSLYYLELTSNTLSGSIPLPLGN-----------------LTNLVVL  270 (365)
Q Consensus       225 s~n~l~~~~~~~l~~-----------------l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L  270 (365)
                      ++|.+++ +|..+..                 +++|+.|++++|.+++ +|..+..                 +++|+.|
T Consensus       149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L  226 (622)
T 3g06_A          149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL  226 (622)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence            8887764 3322211                 1556666666666653 2222111                 1233444


Q ss_pred             ECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705          271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       271 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l  350 (365)
                      ++++|.+++ +|   ..+++|+.|++++|.++. +|.   .+++|+.|+|++|.++ .+|..+..++ +|+.|++++|++
T Consensus       227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~-~L~~L~L~~N~l  296 (622)
T 3g06_A          227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPL  296 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC-TTCEEECCSCCC
T ss_pred             EccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc-ccCEEEecCCCC
Confidence            444444432 12   223444445555554432 222   3345555555555555 4555555554 455555555555


Q ss_pred             cccCChhhhc
Q 045705          351 VGEIPLELRK  360 (365)
Q Consensus       351 ~~~~p~~l~~  360 (365)
                      ++.+|..+.+
T Consensus       297 ~~~~~~~l~~  306 (622)
T 3g06_A          297 SERTLQALRE  306 (622)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCcCHHHHHh
Confidence            5555554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=2.3e-19  Score=176.61  Aligned_cols=193  Identities=22%  Similarity=0.250  Sum_probs=145.6

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      +.|+.|++++|.+.. +|.  ....++.++|+.|+++. +|.   .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        61 ~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~  129 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF  129 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred             CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence            579999999999864 444  33567889999999885 444   67899999999999985 443   56789999999


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCC-----------------CCCCCEEECCCCcCCCCCCcc---C
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN-----------------LTNLVVLELSDNKLSGLIPPS---F  285 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------l~~L~~L~L~~n~l~~~~~~~---l  285 (365)
                      +|.++. +|..   +++|++|++++|.+++ +|..+..                 +++|+.|++++|.+++. |..   +
T Consensus       130 ~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~~~~~L  203 (622)
T 3g06_A          130 GNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PTLPSEL  203 (622)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CCCCTTC
T ss_pred             CCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CCccchh
Confidence            999984 5543   4788888888888874 3332222                 27788888888888753 222   2


Q ss_pred             cC--------------CCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          286 GN--------------LTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       286 ~~--------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ..              +++|+.|++++|.+++. |   ..+++|+.|+|++|.++ .+|.   .++ +|+.|++++|.++
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~---~~~-~L~~L~Ls~N~L~  274 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM---LPS-GLLSLSVYRNQLT  274 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSSCCC
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc---ccc-cCcEEeCCCCCCC
Confidence            11              26788888888888653 3   45688999999999998 6775   344 7999999999999


Q ss_pred             ccCChhhhcCCCCC
Q 045705          352 GEIPLELRKHSSLV  365 (365)
Q Consensus       352 ~~~p~~l~~l~~L~  365 (365)
                       .+|..+.++++|+
T Consensus       275 -~lp~~l~~l~~L~  287 (622)
T 3g06_A          275 -RLPESLIHLSSET  287 (622)
T ss_dssp             -SCCGGGGGSCTTC
T ss_pred             -cCCHHHhhccccC
Confidence             8899999998874

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=7.3e-20  Score=168.83  Aligned_cols=213  Identities=19%  Similarity=0.113  Sum_probs=133.1

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccch-hhhhCCCCCcE-EEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSIL-DEIRSLKSLFN-LRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~-L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ..++.|+|++|+++...+..+.. ..++.++|+.|++.+.++ .+|.++++++. +.+++|+++...|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            45777777777775433333332 356667777777655444 45666766554 4556677776667777777777777


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEccc-CcCCCCCcccCCCCC-CCCEEECCCCcCCCCCCccCcCCCccceEEeec-c
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTS-NTLSGSIPLPLGNLT-NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK-N  299 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n  299 (365)
                      ++++|.+....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++.+.+..| ...+|++|++.+ |
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n  188 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNN  188 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCC
Confidence            7777777755555556666677777754 445544444555553 47777888887775444444 345677777764 5


Q ss_pred             ccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      .+....+.+|..+++|++|||++|+|+ .+|...  +. +|+.|.+.++.--..+| .+.++++|
T Consensus       189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~--~~-~L~~L~~l~~~~l~~lP-~l~~l~~L  248 (350)
T 4ay9_X          189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LE-NLKKLRARSTYNLKKLP-TLEKLVAL  248 (350)
T ss_dssp             TCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS--CT-TCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred             cccCCCHHHhccCcccchhhcCCCCcC-ccChhh--hc-cchHhhhccCCCcCcCC-CchhCcCh
Confidence            555454566777778888888888877 555432  22 56677766655444666 35555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.81  E-value=1.8e-21  Score=180.44  Aligned_cols=216  Identities=19%  Similarity=0.190  Sum_probs=164.2

Q ss_pred             cccc-ceeeeccCCCCCCCcchhhhcc------ccccceecccccccccchhhhh----CC-CCCcEEEeeCCcCCCccC
Q 045705          143 MFSM-LFHVLDFPHTAYSDSMEEAHVT------WPTWLLYLDINAISGSILDEIR----SL-KSLFNLRLGDNTLSGSIP  210 (365)
Q Consensus       143 ~~~~-~L~~L~ls~n~l~~~~~~~~~~------~~~~~l~L~~n~l~~~~~~~~~----~l-~~L~~L~ls~n~i~~~~~  210 (365)
                      ...+ .|++|++++|.+.+..+..+..      ..++.++|+.|.+++..+..+.    .+ ++|++|++++|.+++..+
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            3344 7999999999998877665544      5788899999999987777554    44 899999999999986655


Q ss_pred             cCC----CC-CCCCcEEEcccCcCCCcc----hhhhcCCC-CCCEEEcccCcCCCCCcccC----CCC-CCCCEEECCCC
Q 045705          211 LSL----GN-LTNLATLYLDSNALSGSI----LNEIGNLK-SLYYLELTSNTLSGSIPLPL----GNL-TNLVVLELSDN  275 (365)
Q Consensus       211 ~~~----~~-l~~L~~L~Ls~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n  275 (365)
                      ..+    .. .++|++|++++|.+++..    +..+..++ +|++|++++|.+++..+..+    ..+ ++|++|++++|
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            443    34 369999999999998543    44456665 99999999999986665433    344 59999999999


Q ss_pred             cCCCC----CCccCcC-CCccceEEeeccccCCcch----hhcCCCCCCCeEECcCCcCCCCchh-------HhhhccCC
Q 045705          276 KLSGL----IPPSFGN-LTNLTTLYVYKNSIFGSIL----DEIGNLKSLSNINLSLNKLNGSIPL-------SLTNLTNS  339 (365)
Q Consensus       276 ~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~p~-------~l~~~~~~  339 (365)
                      .++..    ++..+.. .++|++|+|++|.+.+..+    ..+..+++|++|+|++|.+.+..+.       .+..++ +
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~-~  285 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ-K  285 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC-E
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC-c
Confidence            99864    3344544 4589999999999987654    4457789999999999996533322       334454 6


Q ss_pred             CcEEEccCccccccCChhhh
Q 045705          340 LEVVCLSSNHIVGEIPLELR  359 (365)
Q Consensus       340 L~~L~l~~n~l~~~~p~~l~  359 (365)
                      |+.||+++|++.+..|..+.
T Consensus       286 L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          286 IILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             EEEECTTSCBCCGGGCHHHH
T ss_pred             eEEEecCCCcCCCcchHHHH
Confidence            99999999999977666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=2.9e-19  Score=175.68  Aligned_cols=172  Identities=27%  Similarity=0.321  Sum_probs=147.1

Q ss_pred             cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ....|+.|++++|.+.. ++.......++.++|+.|.+++..+  +..+++|+.|+|++|.+++ ++ .+..+++|++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            44578999999999855 4444444577889999999997665  8899999999999999985 33 688999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      |++|.+.+ + ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+
T Consensus       116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            99999985 3 5689999999999999999964  678899999999999999997755  8899999999999999976


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCCC
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNGS  328 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~~  328 (365)
                      .  ..+..+++|+.|+|++|.+++.
T Consensus       190 l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          190 L--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             C--GGGTTCTTCSEEECCSEEEECC
T ss_pred             C--hHHccCCCCCEEEccCCcCcCC
Confidence            5  4688999999999999999853

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1.6e-19  Score=159.83  Aligned_cols=166  Identities=25%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .+..++++++.+.+.. .......++.++++.|+++.. + .+..+++|+.|++++|.+++..+  +.++++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            3555666666664332 111222344455555555432 2 34455555555555555553332  55555555555555


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL  306 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  306 (365)
                      |.+++ ++. +.. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.  
T Consensus        95 N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           95 NRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             SCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--
T ss_pred             CccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--
Confidence            55543 222 112 555555555555553 22 344555555555555555533  2444555555555555555443  


Q ss_pred             hhcCCCCCCCeEECcCCcCC
Q 045705          307 DEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~  326 (365)
                      ..+..+++|+.|++++|.++
T Consensus       166 ~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCCccc
Confidence            34455555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=4.9e-19  Score=158.99  Aligned_cols=171  Identities=26%  Similarity=0.300  Sum_probs=145.7

Q ss_pred             cccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ..+.|+.|++++|.+.+. +.......++.++++.|++++..+  +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            345789999999998654 443334567889999999997655  8999999999999999985 33 488999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            999999863  5788999999999999999854  578899999999999999997654  8899999999999999976


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCC
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~  327 (365)
                      . + .+..+++|+.|++++|+++.
T Consensus       193 l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          193 L-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             C-h-hhccCCCCCEEECcCCcccC
Confidence            5 3 58899999999999999884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=1.7e-21  Score=186.13  Aligned_cols=211  Identities=18%  Similarity=0.130  Sum_probs=161.1

Q ss_pred             cccccceeeeccCCCCCCCcchhhhc------cccccceeccccccccc----chhhhhCCCCCcEEEeeCCcCCCcc--
Q 045705          142 VMFSMLFHVLDFPHTAYSDSMEEAHV------TWPTWLLYLDINAISGS----ILDEIRSLKSLFNLRLGDNTLSGSI--  209 (365)
Q Consensus       142 ~~~~~~L~~L~ls~n~l~~~~~~~~~------~~~~~~l~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~i~~~~--  209 (365)
                      +...+.|+.|++++|.+.+..+....      ...++.++++.|.++..    ++..+..+++|++|++++|.+++..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            34456899999999988655443332      22677889999998874    4677788899999999999887532  


Q ss_pred             ---CcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCCCcccCC-----CCCCCCEEECCCCcC
Q 045705          210 ---PLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----NLTNLVVLELSDNKL  277 (365)
Q Consensus       210 ---~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l  277 (365)
                         +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence               33344688999999999998854    567777899999999999988643332222     336899999999998


Q ss_pred             CCC----CCccCcCCCccceEEeeccccCCcchhhcC----C-CCCCCeEECcCCcCCC----CchhHhhhccCCCcEEE
Q 045705          278 SGL----IPPSFGNLTNLTTLYVYKNSIFGSILDEIG----N-LKSLSNINLSLNKLNG----SIPLSLTNLTNSLEVVC  344 (365)
Q Consensus       278 ~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~N~l~~----~~p~~l~~~~~~L~~L~  344 (365)
                      ++.    ++..+..+++|++|++++|.+.+..+..+.    . .++|++|++++|.+++    .+|..+..++ +|++|+
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~  404 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELD  404 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEEE
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC-CccEEE
Confidence            865    345566779999999999998765554443    2 6799999999999986    6788888887 799999


Q ss_pred             ccCcccccc
Q 045705          345 LSSNHIVGE  353 (365)
Q Consensus       345 l~~n~l~~~  353 (365)
                      +++|++++.
T Consensus       405 l~~N~i~~~  413 (461)
T 1z7x_W          405 LSNNCLGDA  413 (461)
T ss_dssp             CCSSSCCHH
T ss_pred             CCCCCCCHH
Confidence            999999854

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=3.9e-21  Score=183.71  Aligned_cols=218  Identities=18%  Similarity=0.093  Sum_probs=152.6

Q ss_pred             ceeeeccCCCCCCCcchh----hhc-cccccceecccccccccchhhhh-----CCCCCcEEEeeCCcCCCc----cCcC
Q 045705          147 LFHVLDFPHTAYSDSMEE----AHV-TWPTWLLYLDINAISGSILDEIR-----SLKSLFNLRLGDNTLSGS----IPLS  212 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~----~~~-~~~~~~l~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~i~~~----~~~~  212 (365)
                      .|++|++++|.+.+....    .+. ...++.++++.|.++...+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            577888888877654322    111 13566777777777665554443     256788888888887753    4556


Q ss_pred             CCCCCCCcEEEcccCcCCCcc-----hhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCCCCc
Q 045705          213 LGNLTNLATLYLDSNALSGSI-----LNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGLIPP  283 (365)
Q Consensus       213 ~~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~  283 (365)
                      +..+++|++|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+....+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            667788888888888876432     22233578888888888888743    455666688888888888887644333


Q ss_pred             cCc-----CCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCCchhHhhh-----ccCCCcEEEccCcc
Q 045705          284 SFG-----NLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGSIPLSLTN-----LTNSLEVVCLSSNH  349 (365)
Q Consensus       284 ~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~-----~~~~L~~L~l~~n~  349 (365)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .+ +|++|++++|.
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~  381 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCD  381 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCC
Confidence            332     225888999998888765    4566677889999999999988655555554     33 79999999999


Q ss_pred             ccc----cCChhhhcCCCCC
Q 045705          350 IVG----EIPLELRKHSSLV  365 (365)
Q Consensus       350 l~~----~~p~~l~~l~~L~  365 (365)
                      +++    .+|..+..+++|+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCC
T ss_pred             CChhhHHHHHHHHHhCCCcc
Confidence            986    7888888888774

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.8e-18  Score=168.38  Aligned_cols=167  Identities=24%  Similarity=0.255  Sum_probs=140.3

Q ss_pred             cccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcc
Q 045705          170 PTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELT  249 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  249 (365)
                      .++.++|+.|++++ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56789999999987 66555  378999999999999 566   457899999999999996 666 655  99999999


Q ss_pred             cCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705          250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI  329 (365)
Q Consensus       250 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  329 (365)
                      +|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  ++|+.|+|++|.|+ .+
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            999996 565   68999999999999997 454   57899999999999977 555 65  89999999999999 77


Q ss_pred             hhHhhhccCCC-------cEEEccCccccccCChhhhcCCCCC
Q 045705          330 PLSLTNLTNSL-------EVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       330 p~~l~~~~~~L-------~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      |. +..   +|       +.|++++|+|+ .+|..+.++++|.
T Consensus       196 p~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  233 (571)
T 3cvr_A          196 PA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC  233 (571)
T ss_dssp             CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred             hh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence            76 433   57       99999999999 7999999888873

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=7.9e-19  Score=161.86  Aligned_cols=189  Identities=19%  Similarity=0.173  Sum_probs=93.3

Q ss_pred             ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccC-cCCCCCCCCcE-EEcccCcCCCcchhhhcCCCCCCEEEc
Q 045705          171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP-LSLGNLTNLAT-LYLDSNALSGSILNEIGNLKSLYYLEL  248 (365)
Q Consensus       171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~L  248 (365)
                      ++.++|+.|+|+...+.+|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+++|++....|..|..+++|++|++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            4455555555554444455555566666666655543332 34555555443 344445555444555555566666666


Q ss_pred             ccCcCCCCCcccCCCCCCCCEEECCC-CcCCCCCCccCcCCC-ccceEEeeccccCCcchhhcCCCCCCCeEECcC-CcC
Q 045705          249 TSNTLSGSIPLPLGNLTNLVVLELSD-NKLSGLIPPSFGNLT-NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSL-NKL  325 (365)
Q Consensus       249 ~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-N~l  325 (365)
                      ++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++...+..+ ...+|+++++++ |.+
T Consensus       112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTC
T ss_pred             cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcc
Confidence            66655544444444444555555543 344433334444443 35555666665543333333 234555555553 333


Q ss_pred             CCCchhH-hhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          326 NGSIPLS-LTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       326 ~~~~p~~-l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      + .+|.. +..++ +|++||+++|+|+...+..+.+++
T Consensus       191 ~-~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          191 E-ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLK  226 (350)
T ss_dssp             C-CCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             c-CCCHHHhccCc-ccchhhcCCCCcCccChhhhccch
Confidence            3 44432 33444 466666666655532233344433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=8.3e-19  Score=148.27  Aligned_cols=147  Identities=16%  Similarity=0.248  Sum_probs=95.9

Q ss_pred             cceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          172 WLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       172 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      +.++++.|.++ .++ .+..+++|++|++++|.++. + ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            33444444444 223 45666777777777776552 2 35666777777777777776656667777777777777777


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      .+++..+..+..+++|++|++++|. ++. ++ .+..+++|+.|++++|.+.+..  .+..+++|+.|++++|++.
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            7776566667777777777777776 543 33 5677777777777777775532  5667777777777777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=1.6e-18  Score=145.97  Aligned_cols=131  Identities=27%  Similarity=0.367  Sum_probs=76.4

Q ss_pred             cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchh-hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705          196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD  274 (365)
Q Consensus       196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  274 (365)
                      +.+++++|.++ .+|..+..  ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45555555554 33433322  556666666666544332 255666666666666666655555666666666666666


Q ss_pred             CcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc
Q 045705          275 NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI  329 (365)
Q Consensus       275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~  329 (365)
                      |.+++..+..|.++++|++|+|++|++++..|..+..+++|++|+|++|.+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            6666555555666666666666666666555666666666666666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=3.2e-18  Score=140.77  Aligned_cols=132  Identities=23%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             CCCcEEEeeCCcCC-CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEE
Q 045705          193 KSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE  271 (365)
Q Consensus       193 ~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  271 (365)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            55666666666665 45555556666666666666666543  4555555666666666655544444444455555555


Q ss_pred             CCCCcCCCCC-CccCcCCCccceEEeeccccCCcch---hhcCCCCCCCeEECcCCcCC
Q 045705          272 LSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGSIL---DEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       272 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~N~l~  326 (365)
                      +++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555554331 1344444444444444444433322   23444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=5e-18  Score=150.11  Aligned_cols=162  Identities=22%  Similarity=0.265  Sum_probs=89.2

Q ss_pred             eecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC
Q 045705          174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL  253 (365)
Q Consensus       174 l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  253 (365)
                      ++++.+.++...  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence            445555555332  34555666666666666652 33 45556666666666666654332  55666666666666666


Q ss_pred             CCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHh
Q 045705          254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSL  333 (365)
Q Consensus       254 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l  333 (365)
                      .+ ++... . ++|++|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++.  ..+
T Consensus        98 ~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l  168 (263)
T 1xeu_A           98 KN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGL  168 (263)
T ss_dssp             SC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred             CC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHh
Confidence            53 22221 2 5566666666666543  2455566666666666666443  2455566666666666666533  344


Q ss_pred             hhccCCCcEEEccCcccc
Q 045705          334 TNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       334 ~~~~~~L~~L~l~~n~l~  351 (365)
                      ..++ +|+.|++++|+++
T Consensus       169 ~~l~-~L~~L~l~~N~~~  185 (263)
T 1xeu_A          169 TRLK-KVNWIDLTGQKCV  185 (263)
T ss_dssp             TTCC-CCCEEEEEEEEEE
T ss_pred             ccCC-CCCEEeCCCCccc
Confidence            4454 4666666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=5.8e-18  Score=139.22  Aligned_cols=138  Identities=23%  Similarity=0.212  Sum_probs=121.5

Q ss_pred             CCCCcEEEcccCcCC-CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceE
Q 045705          216 LTNLATLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL  294 (365)
Q Consensus       216 l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  294 (365)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            478999999999997 67888889999999999999999865  788899999999999999998788888889999999


Q ss_pred             EeeccccCCcc-hhhcCCCCCCCeEECcCCcCCCCch---hHhhhccCCCcEEEccCccccccCChh
Q 045705          295 YVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIP---LSLTNLTNSLEVVCLSSNHIVGEIPLE  357 (365)
Q Consensus       295 ~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~~~~~L~~L~l~~n~l~~~~p~~  357 (365)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..++ +|++|++++|.+. ++|.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTSC-BCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCChh-hcccc
Confidence            99999997753 3789999999999999999995444   3677777 7999999999998 66654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=7.7e-19  Score=176.60  Aligned_cols=186  Identities=24%  Similarity=0.261  Sum_probs=81.1

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccc---------cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCC
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISG---------SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLT  217 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~---------~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~  217 (365)
                      .++.|+|++|.+... +..    .+..+.|+.|.+..         ..+..+..+..|+.|+|++|.+. .+|..+..++
T Consensus       174 ~~~~l~L~~n~~~~~-~~~----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          174 LTPKIELFANGKDEA-NQA----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             ccceEEeeCCCCCcc-hhh----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence            467788888777542 221    12233344333322         23455556666666666666666 4444444566


Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      +|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|+.|+|+
T Consensus       248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred             CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence            6666666666665 55666666666666666666666 55666666666666666666665 345556666666666666


Q ss_pred             ccccCCcchhhcCCCC-CCCeEECcCCcCCCCchhHhhhccCCCcEEEccCc
Q 045705          298 KNSIFGSILDEIGNLK-SLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN  348 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n  348 (365)
                      +|.+++.+|..+..+. .+..++|++|.+++.+|.       .|+.|+++.|
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence            6666655555543321 112355666666655542       3445555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.74  E-value=2.7e-19  Score=179.85  Aligned_cols=146  Identities=27%  Similarity=0.301  Sum_probs=69.5

Q ss_pred             CcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705          210 PLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT  289 (365)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  289 (365)
                      +..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+.++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            444555555555555555554 34444445555555555555555 44455555555555555555555 3355555555


Q ss_pred             ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhh
Q 045705          290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR  359 (365)
Q Consensus       290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~  359 (365)
                      +|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+......+..+++++|.+++.+|..+.
T Consensus       294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            5555555555553 33444555555555555555555444444433321122345555555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=1.1e-17  Score=140.78  Aligned_cols=133  Identities=27%  Similarity=0.280  Sum_probs=119.6

Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcc-cCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      -+++++++|.++ .+|..+..  +|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|+|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            378999999997 67776544  899999999999966654 48899999999999999999999999999999999999


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      +|.+++..+..|..+++|++|+|++|++++..|..+..++ +|++|++++|++++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCcCc
Confidence            9999988888899999999999999999988888888887 79999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=2.4e-19  Score=175.15  Aligned_cols=185  Identities=18%  Similarity=0.196  Sum_probs=87.0

Q ss_pred             ccceeeeccCCCCCCCcchhhhccc-cccceeccccc-------------ccccchhhhhCCCCCcEEE-eeCCcCCCcc
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINA-------------ISGSILDEIRSLKSLFNLR-LGDNTLSGSI  209 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~-------------l~~~~~~~~~~l~~L~~L~-ls~n~i~~~~  209 (365)
                      .+.|+.|+|++|.+. .+|..+... .++.++++.|.             ..+..|..++.+++|+.|+ ++.|.+.   
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~---  423 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD---  423 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence            445666777777663 445433322 33444444432             3445555556666666665 3443322   


Q ss_pred             CcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCC
Q 045705          210 PLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLT  289 (365)
Q Consensus       210 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  289 (365)
                              .|+.+.+++|.++. ++.     ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.++
T Consensus       424 --------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          424 --------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             --------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             --------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                    11111122222221 110     124555555555552 333 455555555555555555 3444555555


Q ss_pred             ccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcEEEccCcccccc
Q 045705          290 NLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       290 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      +|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..++ +|+.|++++|++++.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQE  548 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGS
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCC
Confidence            55555555555543 23 4555555555555555555333 45555554 455555555555533

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=7.1e-20  Score=178.88  Aligned_cols=94  Identities=22%  Similarity=0.286  Sum_probs=76.4

Q ss_pred             CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705          266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL  345 (365)
Q Consensus       266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l  345 (365)
                      .|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++ .+| .+..++ +|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~-~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLP-RLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCS-SCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCC-CCcEEEC
Confidence            47888888888886 454 888888888888888886 66778888888888888888888 467 677777 6888888


Q ss_pred             cCccccccC-ChhhhcCCCCC
Q 045705          346 SSNHIVGEI-PLELRKHSSLV  365 (365)
Q Consensus       346 ~~n~l~~~~-p~~l~~l~~L~  365 (365)
                      ++|++++.. |..++.+++|.
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCC
T ss_pred             CCCCCCCCCCcHHHhcCCCCC
Confidence            888888766 88888888774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=134.92  Aligned_cols=126  Identities=28%  Similarity=0.415  Sum_probs=68.9

Q ss_pred             EEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc
Q 045705          197 NLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK  276 (365)
Q Consensus       197 ~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  276 (365)
                      .+++++|.++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4555555555 3333221  35555555555554 444555555555555555555554444555555555555555555


Q ss_pred             CCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          277 LSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       277 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      +++..+..|.++++|+.|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55555555555555666666666555444445555556666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=1.8e-16  Score=131.43  Aligned_cols=133  Identities=28%  Similarity=0.296  Sum_probs=101.6

Q ss_pred             CcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCC
Q 045705          195 LFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSD  274 (365)
Q Consensus       195 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  274 (365)
                      .+.+++++|.++ .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            356777777777 344333  25788888888888766666677888888888888888866666677888888888888


Q ss_pred             CcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch
Q 045705          275 NKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       275 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      |.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88887777777888888888888888876666667788888888888888886554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.1e-17  Score=134.72  Aligned_cols=127  Identities=22%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             CCCcEEEeeCCcCC-CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEE
Q 045705          193 KSLFNLRLGDNTLS-GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE  271 (365)
Q Consensus       193 ~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  271 (365)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..                        +..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~------------------------~~~l~~L~~L~   70 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN------------------------LPKLNKLKKLE   70 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT------------------------CCCCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh------------------------hhcCCCCCEEE
Confidence            34555555555554 34444445555555555555555432  33                        44444455555


Q ss_pred             CCCCcCCCCCCccCcCCCccceEEeeccccCCc-chhhcCCCCCCCeEECcCCcCCCCch---hHhhhccCCCcEEEcc
Q 045705          272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSLSNINLSLNKLNGSIP---LSLTNLTNSLEVVCLS  346 (365)
Q Consensus       272 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~~~~~L~~L~l~  346 (365)
                      +++|.+++.+|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..++ +|+.||++
T Consensus        71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~  148 (149)
T 2je0_A           71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY  148 (149)
T ss_dssp             CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred             CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence            555555444444444455555555555555442 23455556666666666666663333   2445555 56666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=2.7e-17  Score=132.42  Aligned_cols=123  Identities=18%  Similarity=0.173  Sum_probs=107.1

Q ss_pred             CCCCCEEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeE
Q 045705          240 LKSLYYLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI  318 (365)
Q Consensus       240 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  318 (365)
                      .++|+.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888999999887 67788888999999999999999876  788999999999999999988788888889999999


Q ss_pred             ECcCCcCCCC-chhHhhhccCCCcEEEccCccccccCC---hhhhcCCCCC
Q 045705          319 NLSLNKLNGS-IPLSLTNLTNSLEVVCLSSNHIVGEIP---LELRKHSSLV  365 (365)
Q Consensus       319 ~L~~N~l~~~-~p~~l~~~~~~L~~L~l~~n~l~~~~p---~~l~~l~~L~  365 (365)
                      ++++|.+++. .+..+..++ +|++|++++|++++..+   ..+..+++|+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             ECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            9999999952 347788887 79999999999997666   5888888874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.1e-16  Score=132.97  Aligned_cols=129  Identities=24%  Similarity=0.307  Sum_probs=114.6

Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  298 (365)
                      -+++++++|.++ .+|..+.  ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            368999999998 5676553  68999999999998 7788999999999999999999998888999999999999999


Q ss_pred             cccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          299 NSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      |.+++..+..|..+++|++|+|++|.++...+..+..++ +|+.|++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-cccEEEeCCCCeec
Confidence            999998888999999999999999999944444566777 79999999999863

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=3.2e-16  Score=129.90  Aligned_cols=134  Identities=29%  Similarity=0.302  Sum_probs=115.6

Q ss_pred             CCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          218 NLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       218 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      ..+.++++++.+. .+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4578999999998 456544  3689999999999997777778999999999999999998877888999999999999


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCC
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEecCCCeeccCc
Confidence            9999888888889999999999999999944444456676 79999999999997655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.8e-16  Score=144.81  Aligned_cols=212  Identities=11%  Similarity=0.062  Sum_probs=157.6

Q ss_pred             ccceeeeccCCCCCC--CcchhhhccccccceecccccccccchhhhhC--------CCCCcEEEeeCCcCCCccCcCCC
Q 045705          145 SMLFHVLDFPHTAYS--DSMEEAHVTWPTWLLYLDINAISGSILDEIRS--------LKSLFNLRLGDNTLSGSIPLSLG  214 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~--~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~--------l~~L~~L~ls~n~i~~~~~~~~~  214 (365)
                      .+.|++|||++|.+.  ....... .. .....+..|.   +...+|.+        +++|+.|++.+ .++.+.+.+|.
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~-~~-~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY-PN-GKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS-GG-GCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeEEecCccccc-cc-cccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            446999999999986  1111111 11 1233333342   33456666        99999999998 88877888899


Q ss_pred             CCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC----CCCCcccC-----------------------------
Q 045705          215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL----SGSIPLPL-----------------------------  261 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l----~~~~~~~~-----------------------------  261 (365)
                      ++++|+++++++|.+....+.+|..+.++..+.+..+..    .......|                             
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP  201 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence            999999999999998777777888877777766554211    00000000                             


Q ss_pred             ---------------------CCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCC-eEE
Q 045705          262 ---------------------GNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLS-NIN  319 (365)
Q Consensus       262 ---------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~  319 (365)
                                           ..+++|+.+++++|.++.+.+.+|.++++|+.+++.+| +..+...+|.++.+|+ .++
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence                                 02789999999999999888889999999999999998 7777788999999999 999


Q ss_pred             CcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          320 LSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       320 L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +.+ .++..-+.+|..+. +|+.+++++|.++...+..|.+|++|.
T Consensus       281 l~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~  324 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSK  324 (329)
T ss_dssp             ECT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred             Ecc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchh
Confidence            998 77734456777777 799999999999977777999998874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=3.4e-16  Score=129.65  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh--hcCCCCCCCeEE
Q 045705          242 SLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD--EIGNLKSLSNIN  319 (365)
Q Consensus       242 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~  319 (365)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.. ++.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence            444444444444422  344445555555555555554333333555555555555555532 222  455555566666


Q ss_pred             CcCCcCCCCchhH----hhhccCCCcEEEccCcccc
Q 045705          320 LSLNKLNGSIPLS----LTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       320 L~~N~l~~~~p~~----l~~~~~~L~~L~l~~n~l~  351 (365)
                      +++|.++ .+|..    +..++ +|+.||+++|.+.
T Consensus       120 l~~N~i~-~~~~~~~~~~~~l~-~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVT-NKKHYRLYVIYKVP-QVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGG-GSTTHHHHHHHHCT-TCSEETTEECCHH
T ss_pred             ecCCCCC-CcHhHHHHHHHHCC-ccceeCCCcCCHH
Confidence            6666655 34432    44554 4666666666544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=2.9e-18  Score=145.03  Aligned_cols=153  Identities=24%  Similarity=0.259  Sum_probs=97.8

Q ss_pred             CCCCcEEEeeCCcCCCccCc------CCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCC
Q 045705          192 LKSLFNLRLGDNTLSGSIPL------SLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLT  265 (365)
Q Consensus       192 l~~L~~L~ls~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  265 (365)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34444455555555544443      55566666666666666654 44 5666666666666666666 4555555556


Q ss_pred             CCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCCchh----------Hhh
Q 045705          266 NLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGSIPL----------SLT  334 (365)
Q Consensus       266 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~  334 (365)
                      +|++|++++|.+++. | .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|.          .+.
T Consensus        94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            677777777777653 3 56677778888888887765432 4677788888888888888755443          256


Q ss_pred             hccCCCcEEEccCccccc
Q 045705          335 NLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       335 ~~~~~L~~L~l~~n~l~~  352 (365)
                      .++ +|+.||  +|.++.
T Consensus       172 ~l~-~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          172 RLP-NLKKLD--GMPVDV  186 (198)
T ss_dssp             HCS-SCSEEC--CGGGTT
T ss_pred             hCC-CcEEEC--CcccCH
Confidence            666 688876  677663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=6.2e-16  Score=128.07  Aligned_cols=132  Identities=18%  Similarity=0.182  Sum_probs=103.8

Q ss_pred             hhCCCCCcEEEeeCCcCCCccCcCCCCC-CCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCC
Q 045705          189 IRSLKSLFNLRLGDNTLSGSIPLSLGNL-TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL  267 (365)
Q Consensus       189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  267 (365)
                      +..+.+|+.|++++|.++. ++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4566788999999998884 444 4444 4899999999998853  678888899999999999885544555788899


Q ss_pred             CEEECCCCcCCCCCCc--cCcCCCccceEEeeccccCCcchh----hcCCCCCCCeEECcCCcCC
Q 045705          268 VVLELSDNKLSGLIPP--SFGNLTNLTTLYVYKNSIFGSILD----EIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       268 ~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~  326 (365)
                      ++|++++|.+.. +|.  .+..+++|+.|++++|.+... |.    .+..+++|+.||+++|.+.
T Consensus        91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998864 444  778888999999999988644 44    4788899999999998876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.57  E-value=4.1e-16  Score=153.48  Aligned_cols=217  Identities=13%  Similarity=0.034  Sum_probs=121.3

Q ss_pred             cccceeeeccCCCCCCCcchhhhcc---ccccceeccccc-ccc-cchhhhhCCCCCcEEEeeCCcCCCc----cCcCCC
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHVT---WPTWLLYLDINA-ISG-SILDEIRSLKSLFNLRLGDNTLSGS----IPLSLG  214 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~~---~~~~~l~L~~n~-l~~-~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~  214 (365)
                      ..+.|++|+|++|.+.+..+.....   ..++.++|+.|. ++. ..+.....+++|++|++++|.+++.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4456777777777766554443322   225566666554 221 1222234567777777777766543    222334


Q ss_pred             CCCCCcEEEcccCcCCC----cchhhhcCCCCCCEEEcccCcCCCCCccc---------------------------CCC
Q 045705          215 NLTNLATLYLDSNALSG----SILNEIGNLKSLYYLELTSNTLSGSIPLP---------------------------LGN  263 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~~  263 (365)
                      .+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ ++..                           +..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            55666666666666652    233334556666666666665542 3333                           444


Q ss_pred             CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCC-chhHhhhccCCCc
Q 045705          264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGS-IPLSLTNLTNSLE  341 (365)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~~~~~L~  341 (365)
                      +++|+.|+++++.. ..+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+. ++.....++ +|+
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~-~L~  345 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK-QLK  345 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT-TCC
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC-CCC
Confidence            45555555555322 2345566677788888888887655433 445777888888887 444433 333334455 688


Q ss_pred             EEEcc-----------CccccccC-ChhhhcCCCC
Q 045705          342 VVCLS-----------SNHIVGEI-PLELRKHSSL  364 (365)
Q Consensus       342 ~L~l~-----------~n~l~~~~-p~~l~~l~~L  364 (365)
                      +|+++           .|.+++.. +.....+++|
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L  380 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL  380 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence            88888           35666432 2334446655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1.7e-17  Score=140.28  Aligned_cols=136  Identities=24%  Similarity=0.309  Sum_probs=114.1

Q ss_pred             chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC
Q 045705          185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL  264 (365)
Q Consensus       185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  264 (365)
                      +|..+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l  114 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence            44588899999999999999996 56 8888999999999999998 677778888999999999999985 44 57788


Q ss_pred             CCCCEEECCCCcCCCCCC-ccCcCCCccceEEeeccccCCcchh----------hcCCCCCCCeEECcCCcCCC
Q 045705          265 TNLVVLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSILD----------EIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       265 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~L~~N~l~~  327 (365)
                      ++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.          .+..+++|+.||  +|.++.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999999999986432 4688899999999999998766554          377889999987  777763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=7.3e-16  Score=151.72  Aligned_cols=216  Identities=14%  Similarity=0.072  Sum_probs=101.4

Q ss_pred             ccceeeeccCCCCCCCcc----hhhh-ccccccceeccccccc----ccchhhhhCCCCCcEEEeeCCcCCCccCcCCCC
Q 045705          145 SMLFHVLDFPHTAYSDSM----EEAH-VTWPTWLLYLDINAIS----GSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGN  215 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~----~~~~-~~~~~~~l~L~~n~l~----~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~  215 (365)
                      .+.|++|++++|.+.+..    +... ....++.++++.|.++    ..++..+..+++|+.|++++|.+.+ ++..+.+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            345666666666554331    1111 1123445555555554    2233334455666666666655542 3333344


Q ss_pred             CCCCcEEEcc---------------------------cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc-ccCCCCCCC
Q 045705          216 LTNLATLYLD---------------------------SNALSGSILNEIGNLKSLYYLELTSNTLSGSIP-LPLGNLTNL  267 (365)
Q Consensus       216 l~~L~~L~Ls---------------------------~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  267 (365)
                      +++|++|+++                           ++.. ..+|..+..+++|++|++++|.+++... ..+..+++|
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            4444444443                           3222 1334444445555555555555432111 123445555


Q ss_pred             CEEECCCCcCCCC-CCccCcCCCccceEEee-----------ccccCCcc-hhhcCCCCCCCeEECcCCcCCCCchhHhh
Q 045705          268 VVLELSDNKLSGL-IPPSFGNLTNLTTLYVY-----------KNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIPLSLT  334 (365)
Q Consensus       268 ~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~-----------~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p~~l~  334 (365)
                      ++|+++ +.+... ++..+..+++|++|+++           .|.+++.. ......+++|++|+++.|.+++..+..+.
T Consensus       321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            555555 222111 12222345566666666           23443322 22233456666777666666655555555


Q ss_pred             h-ccCCCcEEEcc----Ccccccc-----CChhhhcCCCC
Q 045705          335 N-LTNSLEVVCLS----SNHIVGE-----IPLELRKHSSL  364 (365)
Q Consensus       335 ~-~~~~L~~L~l~----~n~l~~~-----~p~~l~~l~~L  364 (365)
                      . ++ +|+.|+++    .|.+++.     ++..+..+++|
T Consensus       400 ~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L  438 (592)
T 3ogk_B          400 TYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL  438 (592)
T ss_dssp             HHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC
T ss_pred             hhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC
Confidence            5 44 57777775    5556542     33335555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=4e-14  Score=116.42  Aligned_cols=103  Identities=27%  Similarity=0.372  Sum_probs=50.7

Q ss_pred             cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC
Q 045705          196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN  275 (365)
Q Consensus       196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  275 (365)
                      +.+++++|.++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            45555555555 2333331  45555555555555444555555555555555555555443334444555555555555


Q ss_pred             cCCCCCCccCcCCCccceEEeecccc
Q 045705          276 KLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       276 ~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      .+++..+..|..+++|+.|+|++|.+
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            55444444444444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=5.4e-14  Score=115.63  Aligned_cols=105  Identities=30%  Similarity=0.296  Sum_probs=55.1

Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeec
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK  298 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  298 (365)
                      .+++++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345555555554 2443332  4555555555555544455555555555555555555544444455555555555555


Q ss_pred             cccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          299 NSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       299 n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      |++++..+..|..+++|++|+|++|+++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555444444555555555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.54  E-value=5.9e-14  Score=115.89  Aligned_cols=103  Identities=28%  Similarity=0.393  Sum_probs=53.2

Q ss_pred             cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC
Q 045705          196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN  275 (365)
Q Consensus       196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  275 (365)
                      +.+++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45566666655 3343332  45555555555555544555555555555555555555433333445555555555555


Q ss_pred             cCCCCCCccCcCCCccceEEeecccc
Q 045705          276 KLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       276 ~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      .+++..+..|..+++|++|+|++|.+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            55544333444455555555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=9.4e-14  Score=114.65  Aligned_cols=103  Identities=25%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             ceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCc
Q 045705          173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT  252 (365)
Q Consensus       173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  252 (365)
                      .++++.|+++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3455555554 2333332  455555555555555555555555555555555555554444444555555555555555


Q ss_pred             CCCCCcccCCCCCCCCEEECCCCcCC
Q 045705          253 LSGSIPLPLGNLTNLVVLELSDNKLS  278 (365)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~  278 (365)
                      +.+..+..+..+++|++|++++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            55443334555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.47  E-value=3e-15  Score=147.32  Aligned_cols=217  Identities=15%  Similarity=0.077  Sum_probs=148.8

Q ss_pred             cccceeeeccCCCCCCCcchhhhc--cccccceecccccccccchhhh-hCCCCCcEEEeeC---------CcCCCccCc
Q 045705          144 FSMLFHVLDFPHTAYSDSMEEAHV--TWPTWLLYLDINAISGSILDEI-RSLKSLFNLRLGD---------NTLSGSIPL  211 (365)
Q Consensus       144 ~~~~L~~L~ls~n~l~~~~~~~~~--~~~~~~l~L~~n~l~~~~~~~~-~~l~~L~~L~ls~---------n~i~~~~~~  211 (365)
                      ..+.|+.|++++|.+.+.......  ...++.++++.| ++......+ ..+++|+.|++++         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            456899999999997654333222  235677888877 443333333 4589999999954         344432222


Q ss_pred             CC-CCCCCCcEEEcccCcCCCcchhhhc-CCCCCCEEEcc--c----CcCCCCC-----cccCCCCCCCCEEECCCCcCC
Q 045705          212 SL-GNLTNLATLYLDSNALSGSILNEIG-NLKSLYYLELT--S----NTLSGSI-----PLPLGNLTNLVVLELSDNKLS  278 (365)
Q Consensus       212 ~~-~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~  278 (365)
                      .+ .++++|++|++.+|.+++..+..+. .+++|+.|+++  +    +.++...     +..+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            22 2478999999999999866666665 58999999999  3    4554221     11256678999999977 565


Q ss_pred             CCCCccCcC-CCccceEEeeccccCCcchhhc-CCCCCCCeEECcCCcCCCCchhHhh-hccCCCcEEEccCccccccCC
Q 045705          279 GLIPPSFGN-LTNLTTLYVYKNSIFGSILDEI-GNLKSLSNINLSLNKLNGSIPLSLT-NLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       279 ~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~p~~l~-~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      ...+..+.. +++|+.|++++|.+++.....+ ..+++|+.|+|++|.+++..+..+. .++ +|+.|++++|+++....
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~  523 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSFGAC  523 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBHHHH
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCHHHH
Confidence            444444444 7899999999999977655555 6689999999999999755444343 356 79999999999875444


Q ss_pred             hhh-hcCCC
Q 045705          356 LEL-RKHSS  363 (365)
Q Consensus       356 ~~l-~~l~~  363 (365)
                      ..+ ..++.
T Consensus       524 ~~l~~~lp~  532 (594)
T 2p1m_B          524 KLLGQKMPK  532 (594)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHhCCC
Confidence            444 33444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=1.4e-15  Score=140.93  Aligned_cols=182  Identities=18%  Similarity=0.141  Sum_probs=107.4

Q ss_pred             cccceecccccccccchhhhhCC-----CCCcEEEeeCCcCCCccCcCC-CCCCCCcEEEcccCcCCCcchhhh-----c
Q 045705          170 PTWLLYLDINAISGSILDEIRSL-----KSLFNLRLGDNTLSGSIPLSL-GNLTNLATLYLDSNALSGSILNEI-----G  238 (365)
Q Consensus       170 ~~~~l~L~~n~l~~~~~~~~~~l-----~~L~~L~ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l-----~  238 (365)
                      .++.++|+.|.++......+..+     .+|+.|+|++|.++......+ ..+++|++|+|++|.++......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            45667777777776555444332     577888888887764322222 234567788888887764433333     2


Q ss_pred             CCCCCCEEEcccCcCCC----CCcccCCCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----ch
Q 045705          239 NLKSLYYLELTSNTLSG----SIPLPLGNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----IL  306 (365)
Q Consensus       239 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~  306 (365)
                      ..++|++|+|++|.++.    .++..+..+++|++|+|++|.+...    ++..+...++|++|+|++|.+++.    +.
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            45677788888777753    1233345667777788877777543    234455666777777777777653    23


Q ss_pred             hhcCCCCCCCeEECcCCcCCCCchhHhhhccC----CCcEEE--ccCcccc
Q 045705          307 DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTN----SLEVVC--LSSNHIV  351 (365)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~----~L~~L~--l~~n~l~  351 (365)
                      ..+...++|++|+|++|.|++.....+..+..    .|+.+.  +..|.++
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            34445667777777777777544444444321    155555  5555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=1.2e-12  Score=122.31  Aligned_cols=196  Identities=12%  Similarity=0.080  Sum_probs=88.0

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEccc
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDS  226 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~  226 (365)
                      .|+.+++++|.+.......+....++.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+ .+|+.+.+. 
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-  256 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-  256 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-
T ss_pred             cCCeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-
Confidence            4444444444443322222222223333333 2233344444445555555555432 33333444444 445555552 


Q ss_pred             CcCCCcchhhhcCCCCCCEEEcccCcCC-----CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          227 NALSGSILNEIGNLKSLYYLELTSNTLS-----GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       227 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      +.++.....+|.++++|+.+++.+|.+.     ...+..|.++++|+.+++. +.++.+...+|.++++|+.+.+..+ +
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence            2233333445555555555555554432     1233445555555555555 2344444455555555555555333 3


Q ss_pred             CCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705          302 FGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       302 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      ......+|.++ +|+.+++.+|.+....+..+..++..++.|++..+.
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            33444555555 555555555555432233333343345555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=1.9e-12  Score=121.06  Aligned_cols=206  Identities=10%  Similarity=0.034  Sum_probs=115.6

Q ss_pred             ceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCC-------------------
Q 045705          147 LFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG-------------------  207 (365)
Q Consensus       147 ~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-------------------  207 (365)
                      .|+.++++.+ +.......+....++.+.+.. .+..+...+|.+|.+|+.+++++|.++.                   
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~  213 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT  213 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence            3455555443 332222333333333333332 3444444455555555555555555443                   


Q ss_pred             ---ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC-----C
Q 045705          208 ---SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS-----G  279 (365)
Q Consensus       208 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~  279 (365)
                         +...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+......+|.++++|+.+++.+|.+.     .
T Consensus       214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~  290 (401)
T 4fdw_A          214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM  290 (401)
T ss_dssp             CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred             hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence               33444555555555555443 23233344444 455555552 3344344566777778888887776654     3


Q ss_pred             CCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch-hHhhhccCCCcEEEccCccccccCChhh
Q 045705          280 LIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       280 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~~~~~L~~L~l~~n~l~~~~p~~l  358 (365)
                      +.+.+|.++++|+.+++.. .+......+|.++.+|+.++|..| ++ .++ .+|..+  +|+.+++++|.+....+..|
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT--GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS--CCCEEEECCSSCCBCCCSSC
T ss_pred             ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC--CCCEEEEcCCCCcccccccc
Confidence            4556777788888888873 465566677888888888888554 55 443 344444  58888888887775555566


Q ss_pred             hcCC
Q 045705          359 RKHS  362 (365)
Q Consensus       359 ~~l~  362 (365)
                      ..++
T Consensus       366 ~~~~  369 (401)
T 4fdw_A          366 YGFP  369 (401)
T ss_dssp             CCSC
T ss_pred             cCCC
Confidence            6553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.41  E-value=3.7e-15  Score=138.07  Aligned_cols=181  Identities=14%  Similarity=0.108  Sum_probs=98.6

Q ss_pred             cceeeeccCCCCCCCcchhhhcc------ccccceecccccccccchhhh-hCCCCCcEEEeeCCcCCCccCcCC-----
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT------WPTWLLYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSGSIPLSL-----  213 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~------~~~~~l~L~~n~l~~~~~~~~-~~l~~L~~L~ls~n~i~~~~~~~~-----  213 (365)
                      ..|+.|++++|.++......+..      ..++.++|+.|.++......+ ..+.+|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            35677777777765433322211      245566777777665444333 234567777777777764332222     


Q ss_pred             CCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC----CcccCCCCCCCCEEECCCCcCCCC----C
Q 045705          214 GNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS----IPLPLGNLTNLVVLELSDNKLSGL----I  281 (365)
Q Consensus       214 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~  281 (365)
                      ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+...    ++..+...++|++|+|++|.++..    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2346677777777776532    333445667777777777776531    133455566777777777776643    2


Q ss_pred             CccCcCCCccceEEeeccccCCcchhhcCCC---C--CCCeEE--CcCCcCC
Q 045705          282 PPSFGNLTNLTTLYVYKNSIFGSILDEIGNL---K--SLSNIN--LSLNKLN  326 (365)
Q Consensus       282 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~--~L~~L~--L~~N~l~  326 (365)
                      +..+...++|++|+|++|.+++.....+..+   .  .|+.+.  +..|.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            2333445667777777777755443333222   1  155555  5555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.40  E-value=4.2e-14  Score=139.16  Aligned_cols=220  Identities=15%  Similarity=0.088  Sum_probs=122.3

Q ss_pred             ccccceeeeccCCCCCCCcchhhhc--cccccceecccc-ccccc-chhhhhCCCCCcEEEeeCCcCCCccCc----CCC
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHV--TWPTWLLYLDIN-AISGS-ILDEIRSLKSLFNLRLGDNTLSGSIPL----SLG  214 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~~~l~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~----~~~  214 (365)
                      ...+.|+.|++++|.+.+..+....  ...++.++|+.| .++.. .+..+..+++|++|++++|.+++..+.    ...
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3455788899998888766555442  246677778777 55543 334445788899999998887754333    234


Q ss_pred             CCCCCcEEEcccCc--CCCc-chhhhcCCCCCCEEEcccCcCCCCCcccCC-----------------------------
Q 045705          215 NLTNLATLYLDSNA--LSGS-ILNEIGNLKSLYYLELTSNTLSGSIPLPLG-----------------------------  262 (365)
Q Consensus       215 ~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----------------------------  262 (365)
                      .+++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+.                             
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            66788888888886  2211 122234467888888877621111222222                             


Q ss_pred             -------------------------CCCCCCEEECCCCcCCCCC-CccCcCCCccceEEeeccccCCc-chhhcCCCCCC
Q 045705          263 -------------------------NLTNLVVLELSDNKLSGLI-PPSFGNLTNLTTLYVYKNSIFGS-ILDEIGNLKSL  315 (365)
Q Consensus       263 -------------------------~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L  315 (365)
                                               .+++|++|++++|.++... ...+..+++|++|++++| +.+. ++.....+++|
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L  340 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL  340 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence                                     3455666666666544221 112335566666666665 3222 12222235666


Q ss_pred             CeEECc---------CCcCCCCchhHhhh-ccCCCcEEEccCccccccCChhhh-cCCCC
Q 045705          316 SNINLS---------LNKLNGSIPLSLTN-LTNSLEVVCLSSNHIVGEIPLELR-KHSSL  364 (365)
Q Consensus       316 ~~L~L~---------~N~l~~~~p~~l~~-~~~~L~~L~l~~n~l~~~~p~~l~-~l~~L  364 (365)
                      ++|+++         .+.+++.....+.. ++ +|+.|++..|.+++..+..+. .+++|
T Consensus       341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L  399 (594)
T 2p1m_B          341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNM  399 (594)
T ss_dssp             CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTC
T ss_pred             CEEEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCc
Confidence            666662         23444333333332 44 577777776777655555554 35554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.40  E-value=9e-13  Score=120.13  Aligned_cols=171  Identities=15%  Similarity=0.117  Sum_probs=124.2

Q ss_pred             ccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC----C----------------
Q 045705          171 TWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL----S----------------  230 (365)
Q Consensus       171 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l----~----------------  230 (365)
                      ++.++|.. .++.+...+|.++++|+.+++++|.+..+.+.+|.++.++.++.+..+..    .                
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~  181 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETT  181 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEE
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccccee
Confidence            34445544 55555556677777777777777776666666666666666655544211    0                


Q ss_pred             ------Ccchh---------------------------hh-cCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc
Q 045705          231 ------GSILN---------------------------EI-GNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK  276 (365)
Q Consensus       231 ------~~~~~---------------------------~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  276 (365)
                            +.++.                           .+ ..+++|+.+++++|.++...+..|.++.+|+.+++.+| 
T Consensus       182 i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-  260 (329)
T 3sb4_A          182 IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-  260 (329)
T ss_dssp             EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-
Confidence                  00000                           01 12789999999999999777778999999999999998 


Q ss_pred             CCCCCCccCcCCCccc-eEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEc
Q 045705          277 LSGLIPPSFGNLTNLT-TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCL  345 (365)
Q Consensus       277 l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l  345 (365)
                      ++.+.+.+|.++++|+ .+++.+ .+..+.+.+|.++++|+.+++++|.++...+.+|..++ +|+.++.
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly~  328 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIYK  328 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEEC
T ss_pred             cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhcc
Confidence            8777888999999999 999988 77777789999999999999999999944444666676 7998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=3.9e-12  Score=116.72  Aligned_cols=105  Identities=26%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             cEEEeeCC-cCCCccCcCCCCCCCCcEEEccc-CcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECC
Q 045705          196 FNLRLGDN-TLSGSIPLSLGNLTNLATLYLDS-NALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELS  273 (365)
Q Consensus       196 ~~L~ls~n-~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  273 (365)
                      ..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 788 4666 88888999999986 88887777888899999999999999988888888889999999999


Q ss_pred             CCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          274 DNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       274 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +|.+++..+..|..++ |+.|+|.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999877766776665 8899998888754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=4.4e-12  Score=116.35  Aligned_cols=105  Identities=21%  Similarity=0.131  Sum_probs=92.1

Q ss_pred             ceecccc-cccccchhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEccc
Q 045705          173 LLYLDIN-AISGSILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS  250 (365)
Q Consensus       173 ~l~L~~n-~l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  250 (365)
                      .++++.+ +++. +|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|.|++..|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4677777 7875 677 99999999999996 999988888999999999999999999988889999999999999999


Q ss_pred             CcCCCCCcccCCCCCCCCEEECCCCcCCCC
Q 045705          251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGL  280 (365)
Q Consensus       251 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  280 (365)
                      |.+++..+..+..+. |+.|++.+|.+...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            999966666666555 99999999998753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=1.3e-10  Score=106.89  Aligned_cols=160  Identities=21%  Similarity=0.220  Sum_probs=95.1

Q ss_pred             chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhc--CCCCCCEEEccc--CcCCCC----
Q 045705          185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIG--NLKSLYYLELTS--NTLSGS----  256 (365)
Q Consensus       185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~----  256 (365)
                      +...+..+++|+.|++++|.-. .++. +. +++|++|++..|.+.......+.  .+++|+.|+|+.  |...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            4455667788888888877311 2222 33 67888888888877644444443  678888888753  211111    


Q ss_pred             -CcccC--CCCCCCCEEECCCCcCCCCCCccC---cCCCccceEEeeccccCCcc----hhhcCCCCCCCeEECcCCcCC
Q 045705          257 -IPLPL--GNLTNLVVLELSDNKLSGLIPPSF---GNLTNLTTLYVYKNSIFGSI----LDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       257 -~~~~~--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~  326 (365)
                       +...+  ..+++|++|++.+|.+....+..+   ..+++|++|+|+.|.+.+..    +..+..+++|+.|+|++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11112  246778888887777653222222   24677888888888776542    223344677888888888777


Q ss_pred             CCchhHhhhccCCCcEEEccCcc
Q 045705          327 GSIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       327 ~~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      +..-..+....  ...+++++++
T Consensus       321 d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          321 DEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHHHHHc--CCEEEecCCc
Confidence            55444444421  2457777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=8.8e-10  Score=101.27  Aligned_cols=165  Identities=19%  Similarity=0.190  Sum_probs=109.2

Q ss_pred             hhhhCCCCCcEEEeeCCcCC---------CccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCC
Q 045705          187 DEIRSLKSLFNLRLGDNTLS---------GSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSI  257 (365)
Q Consensus       187 ~~~~~l~~L~~L~ls~n~i~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  257 (365)
                      .+...+++|+.|.+......         +.++..+..+|+|+.|++++|.-. .++. + .+++|+.|++..|.+....
T Consensus       133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~  209 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV  209 (362)
T ss_dssp             TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred             HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence            34456678888888765332         123344567899999999988421 2333 3 3889999999988876332


Q ss_pred             cccC--CCCCCCCEEECCC--CcCCCC-----CCccC--cCCCccceEEeeccccCCcchhhc---CCCCCCCeEECcCC
Q 045705          258 PLPL--GNLTNLVVLELSD--NKLSGL-----IPPSF--GNLTNLTTLYVYKNSIFGSILDEI---GNLKSLSNINLSLN  323 (365)
Q Consensus       258 ~~~~--~~l~~L~~L~L~~--n~l~~~-----~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N  323 (365)
                      ...+  ..+++|+.|+|+.  |...+.     +...+  ..+++|+.|+|.+|.+.+..+..+   ..+++|++|+|+.|
T Consensus       210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            2233  3688999999863  221111     11122  247899999999998865443333   35789999999999


Q ss_pred             cCCCCch----hHhhhccCCCcEEEccCccccccCC
Q 045705          324 KLNGSIP----LSLTNLTNSLEVVCLSSNHIVGEIP  355 (365)
Q Consensus       324 ~l~~~~p----~~l~~~~~~L~~L~l~~n~l~~~~p  355 (365)
                      .+++..+    ..+..++ +|+.|++++|.++...-
T Consensus       290 ~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          290 VLTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             CCBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHH
T ss_pred             CCChHHHHHHHhhcccCC-cceEEECCCCcCCHHHH
Confidence            9986433    3334456 79999999999885433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=2.2e-09  Score=89.19  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=49.7

Q ss_pred             CCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEEC--cCCcCCCCc--
Q 045705          262 GNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINL--SLNKLNGSI--  329 (365)
Q Consensus       262 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~~~--  329 (365)
                      ...++|++|+|++|.+...    +...+...++|++|+|++|.+.+.    +...+...+.|++|+|  ++|.+....  
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            3344555555555555422    122333445666666666666543    2445556667777777  677776432  


Q ss_pred             --hhHhhhccCCCcEEEccCcccc
Q 045705          330 --PLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       330 --p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                        ...+...+ +|++|++++|.+.
T Consensus       142 ~l~~~L~~n~-~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNT-TLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCS-SCCEEECCCSSHH
T ss_pred             HHHHHHHhCC-CcCEEeccCCCCC
Confidence              23333334 6777777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.65  E-value=3.2e-09  Score=88.15  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=63.5

Q ss_pred             hhhhhCCCCCcEEEeeCC-cCCCc----cCcCCCCCCCCcEEEcccCcCCCcc----hhhhcCCCCCCEEEcccCcCCCC
Q 045705          186 LDEIRSLKSLFNLRLGDN-TLSGS----IPLSLGNLTNLATLYLDSNALSGSI----LNEIGNLKSLYYLELTSNTLSGS  256 (365)
Q Consensus       186 ~~~~~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~  256 (365)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+....    ...+...++|++|          
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L----------   98 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL----------   98 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE----------
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE----------
Confidence            344555667777777776 66532    2333444556666666666665321    2223333444444          


Q ss_pred             CcccCCCCCCCCEEECCCCcCCCC----CCccCcCCCccceEEe--eccccCCc----chhhcCCCCCCCeEECcCCcCC
Q 045705          257 IPLPLGNLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYV--YKNSIFGS----ILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       257 ~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                                    +|++|.+...    +...+...++|++|+|  ++|.+.+.    +...+...+.|++|+|++|.+.
T Consensus        99 --------------~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           99 --------------NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             --------------ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             --------------ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                          4444444422    2234445556666666  66666543    2344455577888888877765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.63  E-value=3.6e-07  Score=85.03  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=111.0

Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL  272 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (365)
                      .+|+.+.+..+ ++.+...++.++..++.+.+..+... .....|..+..++.+....+.+.   ...+..+.+|+.+.+
T Consensus       230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l  304 (394)
T 4fs7_A          230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL  304 (394)
T ss_dssp             CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred             CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence            44555555432 22234455667777777777666443 44566777777777776655432   346778889999988


Q ss_pred             CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccc
Q 045705          273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~  352 (365)
                      .++ ++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+++..+ ++..-..+|..+. +|+.+++..+ ++ 
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~-~~-  378 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR-LE-  378 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG-GG-
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC-CE-
Confidence            765 66566788999999999999754 65666788999999999999877 6633345666666 7999999865 33 


Q ss_pred             cCChhhhcCCCC
Q 045705          353 EIPLELRKHSSL  364 (365)
Q Consensus       353 ~~p~~l~~l~~L  364 (365)
                      .+...|.+|.+|
T Consensus       379 ~~~~~F~~c~~L  390 (394)
T 4fs7_A          379 QYRYDFEDTTKF  390 (394)
T ss_dssp             GGGGGBCTTCEE
T ss_pred             EhhheecCCCCC
Confidence            456678888766

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.49  E-value=2.4e-06  Score=79.42  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=66.2

Q ss_pred             hhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCC
Q 045705          236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL  315 (365)
Q Consensus       236 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  315 (365)
                      +|..+..|+.+.+.++... .....|.++..|+.+.+. +.++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            3445555666655543322 334455666666666664 3344455567777777777777654 444555677777777


Q ss_pred             CeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          316 SNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       316 ~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      +.+.+..+ ++..-..+|..+. +|+.+++.++...
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~~~  370 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSRSQ  370 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCHHH
T ss_pred             CEEEECcc-cCEEhHhHhhCCC-CCCEEEECCceee
Confidence            77777544 5523334555555 6777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.42  E-value=2.8e-06  Score=78.92  Aligned_cols=170  Identities=12%  Similarity=-0.002  Sum_probs=110.9

Q ss_pred             cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCC
Q 045705          184 SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGN  263 (365)
Q Consensus       184 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  263 (365)
                      +...+|..+..|+.+.+..+...  +........+|+.+.+.... .......+..+..|+.+.+..+... .....+..
T Consensus       199 I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~  274 (394)
T 4fs7_A          199 IRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYN  274 (394)
T ss_dssp             ECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTT
T ss_pred             eCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eecccccc
Confidence            33445555555555555443222  11222233456666554332 2233456677777888877766443 45566777


Q ss_pred             CCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCc-hhHhhhccCCCcE
Q 045705          264 LTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSI-PLSLTNLTNSLEV  342 (365)
Q Consensus       264 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~~~~~L~~  342 (365)
                      +..++.+....+.+.   ...|..+.+|+.+.+..+ +..+...+|.++.+|+.+++..+ ++ .+ ..+|..+. +|+.
T Consensus       275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~-~L~~  347 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCT-SLSN  347 (394)
T ss_dssp             CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCT-TCCE
T ss_pred             ccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCC-CCCE
Confidence            788887777665433   357888899999999765 55566788999999999999754 66 44 45666676 7999


Q ss_pred             EEccCccccccCChhhhcCCCCC
Q 045705          343 VCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       343 L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +++..+ ++..-...|.+|.+|+
T Consensus       348 i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          348 INFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             ECCCTT-CCEECTTTBTTCTTCC
T ss_pred             EEECcc-ccEehHHHhhCCCCCC
Confidence            999887 6655677899998874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=7.1e-08  Score=84.33  Aligned_cols=64  Identities=28%  Similarity=0.391  Sum_probs=35.5

Q ss_pred             hCCCCCcEEEeeCCcCCC--ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCC--CCCEEEcccCcCCC
Q 045705          190 RSLKSLFNLRLGDNTLSG--SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLK--SLYYLELTSNTLSG  255 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~  255 (365)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            456667777777777665  2334445566666666666666543  2222222  55555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=5.8e-07  Score=78.50  Aligned_cols=42  Identities=31%  Similarity=0.419  Sum_probs=23.6

Q ss_pred             cCCCCCCEEEcccCcCCC--CCcccCCCCCCCCEEECCCCcCCC
Q 045705          238 GNLKSLYYLELTSNTLSG--SIPLPLGNLTNLVVLELSDNKLSG  279 (365)
Q Consensus       238 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  279 (365)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|+|++|.+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            346667777777776664  222334455555566665555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=2.7e-07  Score=75.07  Aligned_cols=84  Identities=8%  Similarity=0.046  Sum_probs=49.1

Q ss_pred             CCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCc-CCCCCCccCcCC----CccceEEeeccc-cCCcchhhcCCCCC
Q 045705          241 KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNL----TNLTTLYVYKNS-IFGSILDEIGNLKS  314 (365)
Q Consensus       241 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  314 (365)
                      ..|++||++++.++..--..+..+++|++|+|++|. ++...-..+..+    ++|++|+|++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777776664433445666677777777664 443222233332    356677776663 65554555566667


Q ss_pred             CCeEECcCCc
Q 045705          315 LSNINLSLNK  324 (365)
Q Consensus       315 L~~L~L~~N~  324 (365)
                      |++|+|++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777776664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.24  E-value=2.4e-05  Score=72.08  Aligned_cols=129  Identities=17%  Similarity=0.151  Sum_probs=64.5

Q ss_pred             CCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccc
Q 045705          213 LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT  292 (365)
Q Consensus       213 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  292 (365)
                      +..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +......+|.++++|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            344445555555433 22233444555556666665543 33233345555556666655432 3333444555666666


Q ss_pred             eEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCch-hHhhhccCCCcEEEccC
Q 045705          293 TLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP-LSLTNLTNSLEVVCLSS  347 (365)
Q Consensus       293 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~~~~~L~~L~l~~  347 (365)
                      .+.+.++.+......+|.++.+|+.+.|..+ ++ .+. .+|..+. +|+.+.+..
T Consensus       290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~-~L~~i~ip~  342 (379)
T 4h09_A          290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCK-ALSTISYPK  342 (379)
T ss_dssp             EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCCCCCCT
T ss_pred             cccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCC-CCCEEEECC
Confidence            6666555554444556666666666666433 33 232 3334444 455555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.22  E-value=3.4e-07  Score=74.49  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             CCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc-CCCcchhhhcCC----CCCCEEEcccCc-CCCCCcccCCCCCCC
Q 045705          194 SLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA-LSGSILNEIGNL----KSLYYLELTSNT-LSGSIPLPLGNLTNL  267 (365)
Q Consensus       194 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L  267 (365)
                      .|+.||+++|.++..--..+.++++|++|+|++|. +++..-..+..+    ++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            56666666666664444445566666666666664 544333344443    245566665553 332111223344445


Q ss_pred             CEEECCCC
Q 045705          268 VVLELSDN  275 (365)
Q Consensus       268 ~~L~L~~n  275 (365)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=4.6e-06  Score=77.50  Aligned_cols=149  Identities=11%  Similarity=0.151  Sum_probs=99.7

Q ss_pred             CCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEEC
Q 045705          193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL  272 (365)
Q Consensus       193 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  272 (365)
                      ..+..+.+. +.++.+...+|.++.+|+.+.+..+... ....+|.++.+|+.+.+. +.+.......|.++.+|+.+++
T Consensus       242 ~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l  318 (394)
T 4gt6_A          242 REDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI  318 (394)
T ss_dssp             CCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred             cccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence            344445443 2344355667888889999988766543 556778888999999886 4455455667888999999999


Q ss_pred             CCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccc
Q 045705          273 SDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       273 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l  350 (365)
                      ..+ ++.+...+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++...   -..+.... +|+.+.+..+.+
T Consensus       319 p~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~-~L~~i~i~~~~~  390 (394)
T 4gt6_A          319 PEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDS-GLQNLPVAPGSI  390 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCC-CC----------
T ss_pred             CCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccC-CCCEEEeCCCCE
Confidence            764 66566788999999999999654 65666788999999999999887543   13444454 688888776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.11  E-value=1.3e-05  Score=73.92  Aligned_cols=137  Identities=14%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             chhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC
Q 045705          185 ILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL  264 (365)
Q Consensus       185 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  264 (365)
                      ....+..+.+|+.+.+..+ ++.....+|.++..|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..+
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c  285 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC  285 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred             eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence            3445566778888888654 44466677888999999999776 55456678888999999998754 443555678899


Q ss_pred             CCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCC
Q 045705          265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       265 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~  326 (365)
                      .+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~  345 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT  345 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence            99999999988888777889999999999999754 65566788999999999988655 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=1.9e-05  Score=65.30  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=43.1

Q ss_pred             CCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCC---cCCCC---
Q 045705          263 NLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLN---KLNGS---  328 (365)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~~---  328 (365)
                      .-+.|+.|+|++|.+...    +...+..-+.|++|+|++|.|.+.    +.+++..-+.|++|+|++|   .+...   
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            334455555555554422    222333445566666666666442    2244455556677777654   33321   


Q ss_pred             -chhHhhhccCCCcEEEccCcccc
Q 045705          329 -IPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       329 -~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                       +...+..-+ +|+.|+++.|.+.
T Consensus       148 ~ia~aL~~N~-tL~~L~l~~~~~g  170 (197)
T 1pgv_A          148 DMMMAIEENE-SLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHCS-SCCEEECCCCCHH
T ss_pred             HHHHHHHhCC-CcCeEeccCCCcc
Confidence             223333333 5777777666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=1.7e-05  Score=65.64  Aligned_cols=65  Identities=22%  Similarity=0.244  Sum_probs=34.8

Q ss_pred             hCCCCCcEEEeeCC-cCCCc----cCcCCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCC
Q 045705          190 RSLKSLFNLRLGDN-TLSGS----IPLSLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLS  254 (365)
Q Consensus       190 ~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  254 (365)
                      ..-+.|+.|+|++| .|...    +..++..-+.|++|+|++|.|...    +...+..-+.|++|+|++|.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456777777764 55421    233344455666666666666532    2223334455666666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.86  E-value=0.002  Score=49.56  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             EEEcccCcCC-CCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeecccc
Q 045705          245 YLELTSNTLS-GSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSI  301 (365)
Q Consensus       245 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  301 (365)
                      .++.+++.++ ..+|..+  ..+|++|+|++|.|+.+.+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666665 2344332  23577777777777766666677777777777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0037  Score=47.97  Aligned_cols=56  Identities=23%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             EEEcccCcCC-CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCC
Q 045705          221 TLYLDSNALS-GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLS  278 (365)
Q Consensus       221 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  278 (365)
                      .++.+++.++ ..+|..+  -.+|++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 2344322  124666666666666444445556666666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 6e-18
 Identities = 55/306 (17%), Positives = 105/306 (34%), Gaps = 31/306 (10%)

Query: 63  RLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFW 122
           +L      + ++        ++               D       L       ++++   
Sbjct: 89  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148

Query: 123 GPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAIS 182
                  ++          +        L+    + +   + + +   T L  L      
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 183 GSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKS 242
            S +  +  L +L  L L  N L      +L +LTNL  L L +N +S      +  L  
Sbjct: 209 ISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTK 264

Query: 243 LYYLELTSNTLSGSIPLP--------------------LGNLTNLVVLELSDNKLSGLIP 282
           L  L+L +N +S   PL                     + NL NL  L L  N +S + P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 283 PSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEV 342
               +LT L  L+   N +  S +  + NL +++ ++   N+++   PL+  NLT  +  
Sbjct: 325 --VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTR-ITQ 377

Query: 343 VCLSSN 348
           + L+  
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNIN 319
               L   +   L    ++  +  +  +L  +TTL   +  I    +D +  L +L+ IN
Sbjct: 17  TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 72

Query: 320 LSLNKLNGSIPLS-LTNLT 337
            S N+L    PL  LT L 
Sbjct: 73  FSNNQLTDITPLKNLTKLV 91

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 215 NLTNLATLYLDSNALSGSI-LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELS 273
            L       L    ++ ++   ++  + +L    L   ++ G     +  L NL  +  S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 274 DNKLSGLIPPSFGNLTNLTTLYVY 297
           +N+L+ + P    NLT L  + + 
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228
           L+   N +S   +  + +L ++  L  G N +S   PL   NLT +  L L+  A
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 3e-13
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252
                L L +N ++        NL NL TL L +N +S         L  L  L L+ N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 253 LSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV--YKNSIFGSILDEIG 310
           L     LP      L  L + +N+++ +    F  L  +  + +        G       
Sbjct: 91  LKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 311 NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
            +K LS I ++   +  +IP     L  SL  + L  N I       L+  ++L
Sbjct: 148 GMKKLSYIRIADTNIT-TIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 6e-12
 Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 5/191 (2%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L L  N I+     + ++LK+L  L L +N +S   P +   L  L  LYL  N L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTT 293
                 L+ L   E     +  S+   L N   +V L  +  K SG+   +F  +  L+ 
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSY 154

Query: 294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE 353
           + +   +I        G   SL+ ++L  NK+      SL  L N L  + LS N I   
Sbjct: 155 IRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSISAV 210

Query: 354 IPLELRKHSSL 364
               L     L
Sbjct: 211 DNGSLANTPHL 221

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
            +P  L    + A L L +N ++     +  NLK+L+ L L +N +S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG 327
             L LS N+L  L       L  L         +  S+ + +  +  +      L K +G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSG 140

Query: 328 SIPLSLTNLTNSLEVVCLSSNHI 350
               +   +   L  + ++  +I
Sbjct: 141 IENGAFQGMKK-LSYIRIADTNI 162

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 169 WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA 228
                L  +    SG      + +K L  +R+ D  ++    +  G   +L  L+LD N 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNK 182

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNL 288
           ++      +  L +L  L L+ N++S      L N  +L  L L++NKL   +P    + 
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241

Query: 289 TNLTTLYVYKNSIFG------SILDEIGNLKSLSNINLSLNKLN 326
             +  +Y++ N+I                  S S ++L  N + 
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 8e-08
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 166 HVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGD--NTLSGSIPLSLGNLTNLATLY 223
            +      L +  N I+         L  +  + LG      SG    +   +  L+ + 
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 156

Query: 224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPP 283
           +    ++       G   SL  L L  N ++      L  L NL  L LS N +S +   
Sbjct: 157 IADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 213

Query: 284 SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKL-----NGSIPLSLTNLTN 338
           S  N  +L       N+    +   + + K +  + L  N +     N   P        
Sbjct: 214 SLANTPHLRE-LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272

Query: 339 SLEVVCLSSNHI 350
           S   V L SN +
Sbjct: 273 SYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 28/200 (14%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIP----------------------- 210
           L L  N IS         L  L  L L  N L                            
Sbjct: 60  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSV 119

Query: 211 LSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVL 270
            +  N   +  L  +    SG        +K L Y+ +    ++    +P G   +L  L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTEL 176

Query: 271 ELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP 330
            L  NK++ +   S   L NL  L +  NSI       + N   L  ++L+ NKL   +P
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 235

Query: 331 LSLTNLTNSLEVVCLSSNHI 350
             L +    ++VV L +N+I
Sbjct: 236 GGLADHKY-IQVVYLHNNNI 254

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (149), Expect = 1e-11
 Identities = 48/213 (22%), Positives = 70/213 (32%), Gaps = 3/213 (1%)

Query: 127 PPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSIL 186
                +   +    +     L   LD    A   S++ A       L  L ++      L
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 187 --DEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLY 244
                R L +L  L L DN L      +  +L NL  L+L  N +S         L SL 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 245 YLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304
            L L  N ++   P    +L  L+ L L  N LS L   +   L  L  L +  N     
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 305 ILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLT 337
                     L     S +++  S+P  L    
Sbjct: 241 C-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 2/171 (1%)

Query: 189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLEL 248
              L  L  L L    L    P     L  L  LYL  NAL     +   +L +L +L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160

Query: 249 TSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308
             N +S         L +L  L L  N+++ + P +F +L  L TLY++ N++     + 
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR 359
           +  L++L  + L+ N            L   L+    SS+ +   +P  L 
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPCSLPQRLA 269

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 2/167 (1%)

Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT 252
            +   + L  N +S     S     NL  L+L SN L+         L  L  L+L+ N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 253 LSGSI-PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGN 311
              S+ P     L  L  L L    L  L P  F  L  L  LY+  N++     D   +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 312 LKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLEL 358
           L +L+++ L  N+++     +   L + L+ + L  N +    P   
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVAHVHPHAF 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 23/106 (21%), Positives = 42/106 (39%)

Query: 259 LPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI 318
           +P+G       + L  N++S +   SF    NLT L+++ N +          L  L  +
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 319 NLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL 364
           +LS N    S+  +  +    L  + L    +    P   R  ++L
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 5e-10
 Identities = 32/226 (14%), Positives = 54/226 (23%), Gaps = 7/226 (3%)

Query: 35  MVEYFDPCHPVLVGGIGLGKQNVGYMQARLKQHRWWHKKVLKSRDPIFVSIGWRRIQTVP 94
            +         L           G +   L Q +                          
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 95  VYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFP 154
           V    D N     +  +      L           +              ++    +D  
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSM------TISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 155 HTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLG 214
                        +                 L ++   K+L  L L +N + G++P  L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 215 NLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLP 260
            L  L +L +  N L G I  + GNL+        +N      PLP
Sbjct: 266 QLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 272 LSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL 331
           L +N++ G +P     L  L +L V  N++ G I  + GNL+       + NK     PL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 332 S 332
            
Sbjct: 310 P 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 217 TNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNK 276
            NL  L L +N + G++   +  LK L+ L ++ N L G IP   GNL    V   ++NK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 277 -LSGLIPPS 284
            L G   P+
Sbjct: 303 CLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 241 KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKN 299
           K+L  L+L +N + G++P  L  L  L  L +S N L G I P  GNL          N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 289 TNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSN 348
            NL  L +  N I+G++   +  LK L ++N+S N L G IP    NL    +V   ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQR-FDVSAYANN 301

Query: 349 HIVGEIPL 356
             +   PL
Sbjct: 302 KCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 235 NEIGNLKSLYYLELTSNTLSGSIPLP--LGNLTNLVVLELSDN-KLSGLIPPSFGNLTNL 291
           +       +  L+L+   L    P+P  L NL  L  L +     L G IPP+   LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 292 TTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV 351
             LY+   ++ G+I D +  +K+L  ++ S N L+G++P S+++L N    +    N I 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL-VGITFDGNRIS 162

Query: 352 GEIPLELRKHSSL 364
           G IP      S L
Sbjct: 163 GAIPDSYGSFSKL 175

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 49/132 (37%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 187 DEIRSLKSLFNLRLGDNTLSG--SIPLSLGNLTNLATLYLDSNA-LSGSILNEIGNLKSL 243
           D       + NL L    L     IP SL NL  L  LY+     L G I   I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 244 YYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG 303
           +YL +T   +SG+IP  L  +  LV L+ S N LSG +PPS  +L NL  +    N I G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 304 SILDEIGNLKSL 315
           +I D  G+   L
Sbjct: 164 AIPDSYGSFSKL 175

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 198 LRLGDNTLSGSIPLSLGNLTNLATLYLD-SNALSGSILNEIGNLKSLYYLELTSNTLSG- 255
           L L    L    P   G L +   +      +     L E  +   + +++L+++ +   
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 256 SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF 302
           ++   L   + L  L L   +LS  I  +    +NL  L +   S F
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 108

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 5/181 (2%)

Query: 114 HMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWL 173
           ++  L +                   +    ++ +                +       L
Sbjct: 96  NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTL-SGSIPLSLGNLTNLATLYL-DSNALSG 231
                N     +   +R   +L +L L D+ +           L  L  L L     +  
Sbjct: 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 215

Query: 232 SILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL 291
             L E+G + +L  L++      G++ L    L +   L+++ +  + +  P+ GN  N 
Sbjct: 216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIGNKKNQ 272

Query: 292 T 292
            
Sbjct: 273 E 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 22/183 (12%), Positives = 51/183 (27%), Gaps = 10/183 (5%)

Query: 68  RWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAP 127
           +  +   L        S    +        +++ N              ++A     +  
Sbjct: 93  KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 152

Query: 128 PQMRSCCP----KFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDI---NA 180
             +           +   V        LD   +    +          +L +L +     
Sbjct: 153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 212

Query: 181 ISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNL 240
           I    L E+  + +L  L++      G++ L    L +L    ++ +  +      IGN 
Sbjct: 213 IIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNK 269

Query: 241 KSL 243
           K+ 
Sbjct: 270 KNQ 272

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 192 LKSLFNLRLGDNTLSG-SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250
           +   ++       L G      L        L   S+ ++ ++     N+  L  L L++
Sbjct: 16  MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSN 74

Query: 251 NTLSGSIPLP--LGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE 308
           N L     +   +    NL +L LS N+L             L  L++  NS+  +  D+
Sbjct: 75  NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ 134

Query: 309 IGNLKSLSNINLSLNKLNG 327
              + ++      L +L+G
Sbjct: 135 STYISAIRERFPKLLRLDG 153

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 208 SIPLSLGNLTNLATLYLDSNAL-SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
            + L +    + +   LD   L S   L        L       ++++ ++ +   N+  
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN----RRSSMAATLRIIEENIPE 66

Query: 267 LVVLELSDNKLSGL--IPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNK 324
           L+ L LS+N+L  L  +        NL  L +  N +      +      L  + L  N 
Sbjct: 67  LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126

Query: 325 LNGSIP 330
           L+ +  
Sbjct: 127 LSDTFR 132

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 5/115 (4%)

Query: 245 YLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS 304
            L L    L+  +   L  L  +  L+LS N+L   +PP+   L  L  L    N++   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-- 56

Query: 305 ILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR 359
            +D + NL  L  + L  N+L  S  +        L ++ L  N +  E  ++ R
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSI 233
           L+L    ++  +L  +  L  + +L L  N L    P +L  L  L  L   ++  +   
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVL--QASDNALEN 57

Query: 234 LNEIGNLKSLYYLELTSNTL-SGSIPLPLGNLTNLVVLELSDNKLS---GLIPPSFGNLT 289
           ++ + NL  L  L L +N L   +   PL +   LV+L L  N L    G+       L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 290 NLTTL 294
           +++++
Sbjct: 118 SVSSI 122

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 236 EIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY 295
           E+  + S   +      L+ ++P  L    +  +L LS+N L      +    T LT L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 38/179 (21%), Positives = 50/179 (27%), Gaps = 46/179 (25%)

Query: 193 KSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN------------------------- 227
           K    L L +N L      +L   T L  L LD                           
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90

Query: 228 --------------------ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNL 267
                                L+   L  +  L  L  L L  N L    P  L     L
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 268 VVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
             L L++N L+ L       L NL TL + +NS++ +I         L    L  N   
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 9e-06
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 10/88 (11%)

Query: 218 NLATLYLDSNALSGSILNEI-GNLKSLYYLELTSNTLSG----SIPLPLGNLTNLVVLEL 272
           ++ +L +    LS +   E+   L+    + L    L+      I   L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 273 SDNKLSGLIPPSFG-----NLTNLTTLY 295
             N+L  +               +  L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 242 SLYYLELTSNTLSGS-IPLPLGNLTNLVVLELSDNKLSG----LIPPSFGNLTNLTTLYV 296
            +  L++    LS +     L  L    V+ L D  L+      I  +      L  L +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 297 YKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
             N +    +  +   + L   +  + KL+
Sbjct: 63  RSNELGDVGVHCVL--QGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 266 NLVVLELSDNKLSGLIPPS-FGNLTNLTTLYVYKNSI----FGSILDEIGNLKSLSNINL 320
           ++  L++   +LS          L     + +    +       I   +    +L+ +NL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 321 SLNKLNG----SIPLSLTNLTNSLEVVCLSSNH 349
             N+L       +   L   +  ++ + L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 174 LYLDINAISGSILDEI-RSLKSLFNLRLGDNTLSG----SIPLSLGNLTNLATLYLDSNA 228
           L +    +S +   E+   L+    +RL D  L+      I  +L     LA L L SN 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 229 LSGSILNEIGNLKSLYYLELTSNTLSG 255
           L    ++ +         ++   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 263 NLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGSILDEIG-----NLK 313
             + L VL L+D  +S      +  +     +L  L +  N +  + + ++         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 314 SLSNINLSLNKLNGSIPLSLTNL 336
            L  + L     +  +   L  L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 28/205 (13%), Positives = 52/205 (25%), Gaps = 9/205 (4%)

Query: 69  WWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPLAPP 128
                +L     +     W    T        R  R +          +     G     
Sbjct: 245 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 304

Query: 129 QMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDE 188
           +        ++   + S  F      H +   +     +        L+   +       
Sbjct: 305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 364

Query: 189 IRSLKSLFNLRLGDNTLSG----SIPLSLGNLTNLATLYLDSNALSGSILNEIG-----N 239
            +    L  L L D  +S     S+  +L    +L  L L +N L  + + ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 240 LKSLYYLELTSNTLSGSIPLPLGNL 264
              L  L L     S  +   L  L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 239 NLKSLYYLELTSNTLSG----SIPLPLGNLTNLVVLELSDNKLSGLIPPSFG-----NLT 289
               L  L L    +S     S+   L    +L  L+LS+N L                 
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 290 NLTTLYVYKNSIFGSILDEIGNLK 313
            L  L +Y       + D +  L+
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 237 IGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYV 296
           + NL  L  L+   N +S   PL   +L NL+ + L +N++S + P    N +NL  + +
Sbjct: 169 LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNIN 319
           P   L N + +    + ++  +  +  +L  +TTL  +   +  + ++ +  L +L  + 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--TTIEGVQYLNNLIGLE 69

Query: 320 LSLNKLN 326
           L  N++ 
Sbjct: 70  LKDNQIT 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 213 LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLEL 272
           L NL+ L TL  D N +S   ++ + +L +L  + L +N +S     PL N +NL ++ L
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224

Query: 273 SD 274
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 256 SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL 315
           S   PL NL+ L  L+  DNK+S + P    +L NL  +++  N I  S +  + N  +L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNL 219

Query: 316 SNINLS 321
             + L+
Sbjct: 220 FIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 4/145 (2%)

Query: 105 HRMLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEE 164
            ++ +          +                     V        L   +   +     
Sbjct: 85  TKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI 144

Query: 165 AHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL 224
           + +   T L YL I     S L  + +L  L  L+  DN +S   PL   +L NL  ++L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHL 202

Query: 225 DSNALSGSILNEIGNLKSLYYLELT 249
            +N +S   ++ + N  +L+ + LT
Sbjct: 203 KNNQISD--VSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 239 NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298
            L +   +    + ++ ++     +L  +  L      ++ +       L NL  L +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 299 NSIF 302
           N I 
Sbjct: 73  NQIT 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTS 250
           +L +   +  G + ++ ++  +  +L  + TL      ++   +  +  L +L  LEL  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 251 NTL 253
           N +
Sbjct: 73  NQI 75

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 251 NTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIG 310
           N  S  I        +L  L +S+NKL   +P        L  L    N +   + +   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHL-AEVPELPQ 324

Query: 311 NLKSLSNINLSLNKLNG--SIPLSLTNL 336
           NLK L   ++  N L     IP S+ +L
Sbjct: 325 NLKQL---HVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 20/180 (11%), Positives = 57/180 (31%), Gaps = 9/180 (5%)

Query: 66  QHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPL 125
                 + ++   + +      + +  +     ++   +            ++   +   
Sbjct: 179 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD 238

Query: 126 APPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSI 185
            P   +S     + +++   +     +  +   S +   +    P  L  L++   S + 
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV---SNNK 295

Query: 186 LDEI-RSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLY 244
           L E+      L  L    N L+  +P    NL     L+++ N L     +   +++ L 
Sbjct: 296 LIELPALPPRLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLR 350

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 261 LGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI 305
               +  V+L++S  ++  L      NL  L     Y      ++
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 23/187 (12%), Positives = 52/187 (27%)

Query: 66  QHRWWHKKVLKSRDPIFVSIGWRRIQTVPVYAIEDRNGRHRMLKYTPEHMHSLAMFWGPL 125
                 +K+  S++ +   I       +P          + +L   PE   +L      L
Sbjct: 50  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109

Query: 126 APPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSI 185
                    P   +   +  +L  + D  +    +      +++ + +L+L+ N I    
Sbjct: 110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 169

Query: 186 LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYY 245
                  +        +N L           +    L +    +       + NLK L  
Sbjct: 170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229

Query: 246 LELTSNT 252
               +  
Sbjct: 230 RSTYNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 234 LNEIGNLKSLYYLELTSNTLSGSIPL------PLGNLTNLVVLELSDNKLSGLIPPSFGN 287
           +      KS+   E     L G IP        L  L     L LS N +  +   S   
Sbjct: 11  IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSG 68

Query: 288 LTNLTTLYVY 297
           + NL  L + 
Sbjct: 69  MENLRILSLG 78

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 264 LTNLVVLELSDNKLSGLIPP------SFGNLTNLTTLYVYKNSIFGSILDEIGNLKSL 315
             ++V  E    +L G+IPP      +   L     L +  N+I    +  +  +++L
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENL 72

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLK 313
                     L  L  L L DN++S ++P SF +L +LT+     ++ F          +
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-LNLASNPFNCNCHLAWFAE 149

Query: 314 SLSNINLSLNKLNGSIPLSLTNLT----NSLEVVCLSSN 348
            L   +L+        P  + ++        E  C S N
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 5/153 (3%)

Query: 208 SIPLSLGNLTNLATLYLDSNALSGSILNEI-GNLKSLYYLELTSNTLSGSIPLPLGNLTN 266
            IP  +    +   L L+ N L     + + G L  L  LEL  N L+G  P      ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 267 LVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
           +  L+L +NK+  +    F  L  L TL +Y N I   +     +L SL+++NL+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 327 GSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELR 359
            +    L      L    L+        P ++R
Sbjct: 140 CNCH--LAWFAEWLRKKSLNGGAARCGAPSKVR 170

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNIN 319
               L   +   L    ++  +  +  +L  +TTL   +  I    +D +  L +L+ IN
Sbjct: 13  TDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 68

Query: 320 LSLNKLNGSIPLS 332
            S N+L    PL 
Sbjct: 69  FSNNQLTDITPLK 81

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTL 294
           PL NLT L  L++S NK+S +       LTNL +L
Sbjct: 167 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 260 PLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY 297
           PL  LT L  L LS N +S L   +   L NL  L ++
Sbjct: 173 PLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 200 LGDNTLSGSIPLS----LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG 255
           LG  T++   P+                L   +++ ++      L S+  +   ++ +  
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 60

Query: 256 SIPLPLGNLTNLVVLELSDNKLSG 279
              +    L N+  L L+ NKL+ 
Sbjct: 61  VQGI--QYLPNVTKLFLNGNKLTD 82

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 2/151 (1%)

Query: 191 SLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEI-GNLKSLYYLELT 249
                  LR   +         L    NL  LY+++      +       L  L  L + 
Sbjct: 6   CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 250 SNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI 309
            + L    P        L  L LS N L  L   +   L+    +           L  +
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124

Query: 310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSL 340
              +      +   KL       L ++ N+ 
Sbjct: 125 QRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 241 KSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSG----LIPPSFGNLTNLTTLYV 296
           KSL    +T+     S+   L    ++  + LS N +       +  +  +  +L     
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 297 YKNSIFGSILDEIGNLKSLSNINLSLNKLN 326
                     +    L+ L    L   KL+
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 239 NLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYK 298
           N      L+L    +   I      L     ++ SDN++  L    F  L  L TL V  
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 72

Query: 299 NSIFGSILDEIGNLKSLSNINLSLNKLN 326
           N I          L  L+ + L+ N L 
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLV 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.35
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.46

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1e-27  Score=215.95  Aligned_cols=242  Identities=26%  Similarity=0.389  Sum_probs=165.8

Q ss_pred             ccccccCccccceeeeeccCCCCCCCccccccccccccccceeeeccCCCCCCCc--chhhhccc-cccceeccc-cccc
Q 045705          107 MLKYTPEHMHSLAMFWGPLAPPQMRSCCPKFIQQSVMFSMLFHVLDFPHTAYSDS--MEEAHVTW-PTWLLYLDI-NAIS  182 (365)
Q Consensus       107 ~l~~~p~~~~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~~~~-~~~~l~L~~-n~l~  182 (365)
                      ...|.+..--|.+.|.|..|....+..             .++.|||+++.+.+.  +|..+... .++.++|+. |+++
T Consensus        24 l~sW~~~~d~C~~~w~gv~C~~~~~~~-------------~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~   90 (313)
T d1ogqa_          24 LSSWLPTTDCCNRTWLGVLCDTDTQTY-------------RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV   90 (313)
T ss_dssp             GTTCCTTSCTTTTCSTTEEECCSSSCC-------------CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE
T ss_pred             CCCCCCCCCCCCCcCCCeEEeCCCCcE-------------EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc
Confidence            344554332233468887776443321             355667777666653  33433332 455566654 6666


Q ss_pred             ccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCC
Q 045705          183 GSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLG  262 (365)
Q Consensus       183 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  262 (365)
                      |.+|..|+++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+..+++|+++++++|.+.+.+|..+.
T Consensus        91 g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~  170 (313)
T d1ogqa_          91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             cccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccc
Confidence            66677777777777777777777666666666666777777777766666666666777777777777766666666665


Q ss_pred             CCCCC-CEEECCCCcCC-----------------------CCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeE
Q 045705          263 NLTNL-VVLELSDNKLS-----------------------GLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI  318 (365)
Q Consensus       263 ~l~~L-~~L~L~~n~l~-----------------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  318 (365)
                      .+..+ +.+++++|+++                       +.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|
T Consensus       171 ~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L  249 (313)
T d1ogqa_         171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL  249 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            55543 55555555544                       4455566677889999999999876654 68888999999


Q ss_pred             ECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          319 NLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       319 ~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +|++|++++.+|..+..++ +|++|+|++|+|+|.+|+ ++++++|
T Consensus       250 ~Ls~N~l~g~iP~~l~~L~-~L~~L~Ls~N~l~g~iP~-~~~L~~L  293 (313)
T d1ogqa_         250 DLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQ-GGNLQRF  293 (313)
T ss_dssp             ECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCC-STTGGGS
T ss_pred             cCccCeecccCChHHhCCC-CCCEEECcCCcccccCCC-cccCCCC
Confidence            9999999999999999998 799999999999999995 4555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=4.2e-25  Score=198.60  Aligned_cols=194  Identities=29%  Similarity=0.432  Sum_probs=169.9

Q ss_pred             cccceecccccccc--cchhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEE
Q 045705          170 PTWLLYLDINAISG--SILDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYL  246 (365)
Q Consensus       170 ~~~~l~L~~n~l~~--~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  246 (365)
                      .++.++|+.+++++  .+|+.++++++|++|+|++ |.+++.+|..++++++|++|+|++|.+.+..+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            34668899999987  4789999999999999987 89999999999999999999999999998889999999999999


Q ss_pred             EcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCcc-ceEEeeccccCCc---------------------
Q 045705          247 ELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL-TTLYVYKNSIFGS---------------------  304 (365)
Q Consensus       247 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~---------------------  304 (365)
                      ++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+.++ +.+++++|++++.                     
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999998888888777665 6777777766443                     


Q ss_pred             --chhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          305 --ILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       305 --~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                        ++..+..+++++.+++++|.+++.+| .+...+ +|+.|++++|+++|.+|.+|+++++|+
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~-~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCT-TCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             cccccccccccccccccccccccccccc-cccccc-ccccccCccCeecccCChHHhCCCCCC
Confidence              44455677889999999999986655 566666 799999999999999999999999885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.1e-24  Score=186.05  Aligned_cols=197  Identities=23%  Similarity=0.198  Sum_probs=168.5

Q ss_pred             eeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          148 FHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       148 L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      +...|.+++.++. +|..+ ...++.++|+.|.++...+..|.++++|++|+|++|.++. ++ .++.+++|++|++++|
T Consensus        12 ~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          12 HLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSS
T ss_pred             CeEEEccCCCCCe-eCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccc
Confidence            3345888888864 45433 2456789999999998777889999999999999999984 43 3578899999999999


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                      +++ ..+..+..+++|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|++++..+.
T Consensus        88 ~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             ccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            997 4677888999999999999999877778888899999999999999988888888899999999999999888888


Q ss_pred             hcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          308 EIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      .|..+++|++|+|++|+|+ .+|..++.++ +|+.|+|++|++.
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~-~L~~L~L~~Np~~  208 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             ccccccccceeecccCCCc-ccChhHCCCC-CCCEEEecCCCCC
Confidence            8999999999999999999 8998888887 7999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-23  Score=184.80  Aligned_cols=207  Identities=23%  Similarity=0.211  Sum_probs=177.5

Q ss_pred             cceeeeccCCCCCCCcchhhhccc-cccceecccccccccchhhhhCCCCCcEEEee-CCcCCCccCcCCCCCCCCcEEE
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTW-PTWLLYLDINAISGSILDEIRSLKSLFNLRLG-DNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~-~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls-~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      +.+++|+|++|+++...+..+... .++.++++.|.+....+..+..+..++.++.. .+.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467899999999965554444443 47788999999998888888888899998775 5677777788899999999999


Q ss_pred             cccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCC
Q 045705          224 LDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       224 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++|.+....+..+....+|+.+++++|.+++..+..+..+++|+.|++++|.+++..+..|.++++|+.+++++|++.+
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            99999887777788889999999999999997777788889999999999999998888899999999999999999988


Q ss_pred             cchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccccc
Q 045705          304 SILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGE  353 (365)
Q Consensus       304 ~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~  353 (365)
                      ..|..|..+++|++|++++|.+++..+..+..++ +|++|++++|++...
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~-~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVCD  240 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEECS
T ss_pred             cChhHhhhhhhccccccccccccccccccccccc-ccCEEEecCCCCCCC
Confidence            8899999999999999999999977777777777 799999999988743

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-23  Score=182.93  Aligned_cols=212  Identities=24%  Similarity=0.213  Sum_probs=186.0

Q ss_pred             eccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc-cCcC
Q 045705          151 LDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD-SNAL  229 (365)
Q Consensus       151 L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l  229 (365)
                      ++.++.++. .+|.... ..++.++|++|+|+...+.+|.++++|++|++++|.+....+..+.++..++.++.. .+.+
T Consensus        16 v~c~~~~L~-~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCS-SCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCC-ccCCCCC-CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            345666663 4454332 345789999999998878889999999999999999998888889999999999875 5677


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      ....+..|.++++|++|++++|.+....+..+..+.+|+.+++++|.++++.+..|..+++|+.|++++|.+....+.+|
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            77778889999999999999999987777788889999999999999998888899999999999999999988888999


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .++++|+.+++++|.+++..|..+..++ +|++||+++|++++..|..|.++++|.
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ccccccchhhhhhccccccChhHhhhhh-hcccccccccccccccccccccccccC
Confidence            9999999999999999977788888887 799999999999988888999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=177.56  Aligned_cols=185  Identities=26%  Similarity=0.272  Sum_probs=162.9

Q ss_pred             ceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCc
Q 045705          173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNT  252 (365)
Q Consensus       173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~  252 (365)
                      .+++++++++. +|..+.  +++++|+|++|.|++..+.+|.++++|++|+|++|.++ .++ .++.+++|++|++++|+
T Consensus        14 ~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          14 EVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSC
T ss_pred             EEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccc
Confidence            35777788884 566553  57999999999999777788999999999999999998 444 46789999999999999


Q ss_pred             CCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhH
Q 045705          253 LSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLS  332 (365)
Q Consensus       253 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~  332 (365)
                      +. ..+..+..+++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..++.++.+++++|++++..+..
T Consensus        89 l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~  167 (266)
T d1p9ag_          89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL  167 (266)
T ss_dssp             CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred             cc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccc
Confidence            98 55778899999999999999999888889999999999999999998888888899999999999999999666666


Q ss_pred             hhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          333 LTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       333 l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +..++ +|++|+|++|+|+ .+|..+..+++|+
T Consensus       168 ~~~l~-~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         168 LNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             TTTCT-TCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             ccccc-ccceeecccCCCc-ccChhHCCCCCCC
Confidence            77777 7999999999999 8999999888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=2.2e-21  Score=173.31  Aligned_cols=199  Identities=24%  Similarity=0.273  Sum_probs=125.3

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEE
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLY  223 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~  223 (365)
                      ++.+++||+++|+++...+..+.. ..++.++++.|.+....|..|.++++|++|++++|+++. +|..+  .+.++.|+
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~  106 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELR  106 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhh
Confidence            457999999999996655544433 467889999999998889999999999999999999884 33222  23455555


Q ss_pred             cccCcCCCcc--------------------------hhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcC
Q 045705          224 LDSNALSGSI--------------------------LNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKL  277 (365)
Q Consensus       224 Ls~n~l~~~~--------------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  277 (365)
                      +++|.+....                          +..+..+++|+++++++|.+. .+|..  .+++|+.|++++|..
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKI  183 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCC
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcC
Confidence            5555544321                          112344455666666666555 23322  234556666666655


Q ss_pred             CCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          278 SGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       278 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      .+..+..|.+++.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..++ +|++|++++|+|+
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~-~L~~L~Ls~N~i~  255 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHNNNIS  255 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS-SCCEEECCSSCCC
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccccc-CCCEEECCCCccC
Confidence            5555555555556666666666655555555555566666666666665 4555555555 4666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1.8e-20  Score=167.28  Aligned_cols=216  Identities=22%  Similarity=0.187  Sum_probs=163.0

Q ss_pred             cccccccc-ccccccceeeeccCCCCCCCcchhhhcc-ccccceecccccccccchhhhhCCCCCcEEEeeCCcCCC---
Q 045705          133 CCPKFIQQ-SVMFSMLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG---  207 (365)
Q Consensus       133 ~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~---  207 (365)
                      +.++.+.. .+...+.|++|++++|.+....|..+.. ..++.+++++|+++.. |..+  ...++.|++.+|.+.+   
T Consensus        41 N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~  117 (305)
T d1xkua_          41 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRK  117 (305)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCH
T ss_pred             CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccch--hhhhhhhhccccchhhhhh
Confidence            34444543 3456678999999999998776665544 3566778887777643 2221  2345555555554442   


Q ss_pred             -----------------------ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCC
Q 045705          208 -----------------------SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNL  264 (365)
Q Consensus       208 -----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  264 (365)
                                             ..+..+..+++|+.+++++|.+. .+|..  ..++|++|++++|...+..+..+..+
T Consensus       118 ~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             hhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhcc
Confidence                                   22345677889999999999987 45544  36799999999999998888899999


Q ss_pred             CCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHh-------hhcc
Q 045705          265 TNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSL-------TNLT  337 (365)
Q Consensus       265 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l-------~~~~  337 (365)
                      +.++.|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|+|++|+|+ .++...       ....
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccC
Confidence            99999999999999888899999999999999999996 45778999999999999999999 554322       2233


Q ss_pred             CCCcEEEccCcccc-ccCChh
Q 045705          338 NSLEVVCLSSNHIV-GEIPLE  357 (365)
Q Consensus       338 ~~L~~L~l~~n~l~-~~~p~~  357 (365)
                       +|+.|++++|+++ ..++..
T Consensus       273 -~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         273 -SYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             -CCSEEECCSSSSCGGGSCGG
T ss_pred             -CCCEEECCCCcCccCcCCHh
Confidence             7999999999985 344433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.8e-18  Score=158.77  Aligned_cols=161  Identities=33%  Similarity=0.465  Sum_probs=106.3

Q ss_pred             CCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEE
Q 045705          192 LKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLE  271 (365)
Q Consensus       192 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  271 (365)
                      +++++.+++++|.+++..|  +..+++|++|++++|.++.  ...+..+++|+.|++++|.+++..  .++.+++|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEee
Confidence            3444444444444443322  2334556666666666653  234556666777777777666432  255666677777


Q ss_pred             CCCCcCCCCC--------------------CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchh
Q 045705          272 LSDNKLSGLI--------------------PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPL  331 (365)
Q Consensus       272 L~~n~l~~~~--------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~  331 (365)
                      +++|.+++..                    ...+..+++++.|++++|++++..  .+..+++|++|++++|+++ .++ 
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-  345 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-  345 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-
Confidence            6666655331                    123556778889999999887653  3778899999999999998 555 


Q ss_pred             HhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          332 SLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       332 ~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      .+..++ +|++|++++|++++..|  +.++++|+
T Consensus       346 ~l~~l~-~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         346 SLANLT-NINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             GGGGCT-TCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             hHcCCC-CCCEEECCCCcCCCChh--hccCCCCC
Confidence            577887 79999999999996554  77777763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.7e-18  Score=144.53  Aligned_cols=173  Identities=29%  Similarity=0.417  Sum_probs=117.8

Q ss_pred             cccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCC
Q 045705          176 LDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSG  255 (365)
Q Consensus       176 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  255 (365)
                      +..+.+++...  ...+.+++.|++++|.++..  ..+..+++|++|++++|++++..  .++.+++|++|++++|.+. 
T Consensus        25 l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-   97 (199)
T d2omxa2          25 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-   97 (199)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-
T ss_pred             hCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-
Confidence            34444444332  13456777888888877743  24667778888888888877533  2777888888888888776 


Q ss_pred             CCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhh
Q 045705          256 SIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTN  335 (365)
Q Consensus       256 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  335 (365)
                      .++ .+.+++.|+.|++++|.....  ..+..+++|+.|++++|.+...  +.+..+++|+.|++++|.++ .++ .+..
T Consensus        98 ~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~-~l~-~l~~  170 (199)
T d2omxa2          98 DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVT-DLK-PLAN  170 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTT
T ss_pred             ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--cccccccccccccccccccc-CCc-cccC
Confidence            333 367778888888887777643  3466778888888888877433  35677788888888888887 343 3566


Q ss_pred             ccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          336 LTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       336 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      ++ +|++|++++|+++ .+| .++++++|.
T Consensus       171 l~-~L~~L~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         171 LT-TLERLDISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             CT-TCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             CC-CCCEEECCCCCCC-CCc-cccCCCCCC
Confidence            66 6888888888887 344 467777663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=4.2e-19  Score=147.44  Aligned_cols=170  Identities=23%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             ceecccccccccchhhhhCCCCCcEEEeeCCcCCC-ccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccC
Q 045705          173 LLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSG-SIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSN  251 (365)
Q Consensus       173 ~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  251 (365)
                      .++++.++++ .+|..+.  +++++|+|++|.|+. ..+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            4556666665 3444332  456666666666654 33445566666666666666666666666666666666666666


Q ss_pred             cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCCch
Q 045705          252 TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGSIP  330 (365)
Q Consensus       252 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p  330 (365)
                      ++.+..+..|.++++|++|+|++|.++++.+.+|..+++|++|+|++|.+..... .++.  ..++.+.+..+.++...|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC
Confidence            6665555566666666666666666666666666666666666666666543221 1111  123444455555554444


Q ss_pred             hHhhhccCCCcEEEccCcccc
Q 045705          331 LSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       331 ~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      ..+.    .++.++++.|++.
T Consensus       167 ~~l~----~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SKVR----DVQIKDLPHSEFK  183 (192)
T ss_dssp             TTTT----TSBGGGSCTTTCC
T ss_pred             hhhc----CCEeeecCHhhCc
Confidence            3322    3445566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=4.1e-18  Score=143.46  Aligned_cols=181  Identities=28%  Similarity=0.370  Sum_probs=132.5

Q ss_pred             eccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCC
Q 045705          151 LDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALS  230 (365)
Q Consensus       151 L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  230 (365)
                      .+++.+.+.+.++.... ..++.++++.|.++...  .+..+++|++|++++|.+++..  .++.+++|++|++++|+++
T Consensus        29 ~~l~~~~~~~~~~~~~L-~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HHTTCSCTTSEECHHHH-HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HHhCcCccCCccCHHHh-cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            45666666655543211 23456777777776432  3677888888999888888543  3577888889999888887


Q ss_pred             CcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcC
Q 045705          231 GSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIG  310 (365)
Q Consensus       231 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  310 (365)
                      + ++ .+..+++|+.|++++|.+. .+ ..+..++.++.+++++|.++..  ..+..+++|+.+++++|++.+..  .+.
T Consensus       104 ~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~  175 (210)
T d1h6ta2         104 D-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLA  175 (210)
T ss_dssp             C-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGT
T ss_pred             c-cc-ccccccccccccccccccc-cc-cccccccccccccccccccccc--ccccccccccccccccccccccc--ccc
Confidence            4 44 5788888888888888876 33 3577788888888888888753  45667888888888888886542  377


Q ss_pred             CCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccC
Q 045705          311 NLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS  347 (365)
Q Consensus       311 ~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~  347 (365)
                      ++++|++|+|++|+++ .++ .+..++ +|++|+|++
T Consensus       176 ~l~~L~~L~Ls~N~i~-~l~-~l~~l~-~L~~L~Ls~  209 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHIS-DLR-ALAGLK-NLDVLELFS  209 (210)
T ss_dssp             TCTTCCEEECCSSCCC-BCG-GGTTCT-TCSEEEEEE
T ss_pred             CCCCCCEEECCCCCCC-CCh-hhcCCC-CCCEEEccC
Confidence            8888888899888888 565 467776 688888864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.2e-17  Score=142.33  Aligned_cols=199  Identities=28%  Similarity=0.379  Sum_probs=149.4

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCc
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNA  228 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~  228 (365)
                      ..++++.+.+.+.....- -..++.+++..|+++..  ..+..+++|++|++++|.+++..+  +.++++++++++++|.
T Consensus        22 ~~~~l~~~~~~d~~~~~~-l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQAD-LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHHHTTCSSTTSEECHHH-HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHHhCCCCcCCcCCHHH-cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            346777777766543211 22456778888888753  457889999999999999886544  7888999999999998


Q ss_pred             CCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhh
Q 045705          229 LSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDE  308 (365)
Q Consensus       229 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  308 (365)
                      ++. + ..+..+++|++++++++...+.  ..+...+.++.+.++.+.+...  ..+..+++|++|++++|.+.+.  ..
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hh
Confidence            873 3 3578899999999998887643  3456778888999988888754  4467788899999999988654  34


Q ss_pred             cCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          309 IGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       309 l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      +.++++|++|+|++|+++ .++ .+..++ +|++|++++|++++ +| .+.++++|+
T Consensus       169 l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~-~L~~L~Ls~N~lt~-i~-~l~~l~~L~  220 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKIS-DIS-PLASLP-NLIEVHLKNNQISD-VS-PLANTSNLF  220 (227)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCG-GGGGCT-TCCEEECTTSCCCB-CG-GGTTCTTCC
T ss_pred             hcccccceecccCCCccC-CCh-hhcCCC-CCCEEECcCCcCCC-Cc-ccccCCCCC
Confidence            788899999999999988 454 367777 79999999999884 44 367777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.6e-17  Score=138.57  Aligned_cols=178  Identities=30%  Similarity=0.411  Sum_probs=141.8

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcC
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNAL  229 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  229 (365)
                      ..+++.+.+.+.++.. .-..++.++++.|+++..  +.+..+++|++|++++|.+++..+  +.++++|++|++++|.+
T Consensus        22 ~~~l~~~~~~~~~~~~-~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQT-DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHHTTCSSTTSEECHH-HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHHhCCCCCCCccCHH-HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3566777776654432 123456788888887743  357889999999999999996543  88999999999999998


Q ss_pred             CCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhc
Q 045705          230 SGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEI  309 (365)
Q Consensus       230 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  309 (365)
                      .. ++ .+..+++|+.|++++|.....  ..+..+++|+.|++++|.+...  +.+..+++|+.|++.+|++++.  ..+
T Consensus        97 ~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l  168 (199)
T d2omxa2          97 AD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPL  168 (199)
T ss_dssp             CC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGG
T ss_pred             cc-cc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccc
Confidence            74 33 488999999999999988743  3578899999999999999753  4688899999999999999765  358


Q ss_pred             CCCCCCCeEECcCCcCCCCchhHhhhccCCCcEE
Q 045705          310 GNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVV  343 (365)
Q Consensus       310 ~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L  343 (365)
                      .++++|++|++++|+++ .++ .+..++ +|+.|
T Consensus       169 ~~l~~L~~L~ls~N~i~-~i~-~l~~L~-~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNKVS-DIS-VLAKLT-NLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSCCC-CCG-GGGGCT-TCSEE
T ss_pred             cCCCCCCEEECCCCCCC-CCc-cccCCC-CCCcC
Confidence            89999999999999998 555 467777 68875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=5.4e-18  Score=142.68  Aligned_cols=175  Identities=26%  Similarity=0.396  Sum_probs=142.8

Q ss_pred             eecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcC
Q 045705          174 LYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTL  253 (365)
Q Consensus       174 l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l  253 (365)
                      ..+..+.+++.++.  ..+.+|+.|++++|.++.. + .+..+++|++|++++|.+++..  .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            34556666655543  3457899999999999854 3 4788999999999999998633  468999999999999999


Q ss_pred             CCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHh
Q 045705          254 SGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSL  333 (365)
Q Consensus       254 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l  333 (365)
                      ++ ++ .+..+++|+.|++++|.+...  ..+..+++++.+++++|.+.+.  ..+..+++|+++++++|.++ .++ .+
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~-~i~-~l  174 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIV-PL  174 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCG-GG
T ss_pred             cc-cc-ccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccc-ccc-cc
Confidence            84 44 588899999999999998743  5688899999999999998654  45677899999999999999 454 36


Q ss_pred             hhccCCCcEEEccCccccccCChhhhcCCCCC
Q 045705          334 TNLTNSLEVVCLSSNHIVGEIPLELRKHSSLV  365 (365)
Q Consensus       334 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~  365 (365)
                      ..++ +|+.|++++|+++ .+| .+.++++|.
T Consensus       175 ~~l~-~L~~L~Ls~N~i~-~l~-~l~~l~~L~  203 (210)
T d1h6ta2         175 AGLT-KLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (210)
T ss_dssp             TTCT-TCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             cCCC-CCCEEECCCCCCC-CCh-hhcCCCCCC
Confidence            7787 7999999999998 566 588888874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.7e-17  Score=152.02  Aligned_cols=191  Identities=27%  Similarity=0.327  Sum_probs=158.3

Q ss_pred             ccccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEE
Q 045705          143 MFSMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L  222 (365)
                      ...+.++.+++++|.+.+..+. .....++.++++.|.++..  +.+..+++|+.|++++|.+++..+  +..+++|++|
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  268 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  268 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             ccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEe
Confidence            4445688999999999776553 3344677889999998853  467889999999999999986543  7889999999


Q ss_pred             EcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccC
Q 045705          223 YLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIF  302 (365)
Q Consensus       223 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  302 (365)
                      ++++|.+++..  .+..++.++.+++.+|.+.+  ...+..+++++.|++++|++++..  .+..+++|++|++++|+++
T Consensus       269 ~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         269 KLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             eccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            99999998533  47889999999999999985  235778899999999999999763  4888999999999999996


Q ss_pred             CcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCcc
Q 045705          303 GSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNH  349 (365)
Q Consensus       303 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~  349 (365)
                      +. + .+.++++|++|++++|++++..|  +.+++ +|+.|++++|.
T Consensus       343 ~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~-~L~~L~L~~Na  384 (384)
T d2omza2         343 DV-S-SLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQA  384 (384)
T ss_dssp             CC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCT-TCSEEECCCEE
T ss_pred             CC-h-hHcCCCCCCEEECCCCcCCCChh--hccCC-CCCEeeCCCCc
Confidence            53 3 68899999999999999995544  67787 79999999983

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=3.1e-19  Score=148.31  Aligned_cols=172  Identities=18%  Similarity=0.173  Sum_probs=113.5

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccc-cchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISG-SILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      +++|.++++++ .+|... ...++.++|+.|.|+. ..+..|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~-~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcC-ccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            45677777774 344432 2345667777787765 34556677777888888888777777777777778888888888


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcchh
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSILD  307 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  307 (365)
                      ++....+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+.......+ -...++.+.+..+.+....|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence            8776666777778888888888888776666777777778888887777764321111 112345555566655444443


Q ss_pred             hcCCCCCCCeEECcCCcCC
Q 045705          308 EIGNLKSLSNINLSLNKLN  326 (365)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~  326 (365)
                      .   +..++.++|+.|.++
T Consensus       168 ~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         168 K---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             T---TTTSBGGGSCTTTCC
T ss_pred             h---hcCCEeeecCHhhCc
Confidence            3   344556677777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.7e-18  Score=144.82  Aligned_cols=210  Identities=15%  Similarity=0.141  Sum_probs=119.3

Q ss_pred             eeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCcc-CcCCCCCCCCcEEEccc-C
Q 045705          150 VLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSI-PLSLGNLTNLATLYLDS-N  227 (365)
Q Consensus       150 ~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~Ls~-n  227 (365)
                      +++.++.+++ .+|.... ..++.++++.|.++...+.+|.++++|++|++++|.+...+ +.+|.++++++++.+.. |
T Consensus        12 ~i~c~~~~l~-~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCC-CcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            3444555553 3333222 23455666666666555556677777777777777766433 34566677777776653 4


Q ss_pred             cCCCcchhhhcCCCCCCEEEcccCcCCCCCcc-cCCCCCCCCEEECCCCcCCCCCCccCcCCC-ccceEEeeccccCCcc
Q 045705          228 ALSGSILNEIGNLKSLYYLELTSNTLSGSIPL-PLGNLTNLVVLELSDNKLSGLIPPSFGNLT-NLTTLYVYKNSIFGSI  305 (365)
Q Consensus       228 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~  305 (365)
                      .+....+..|..+++|+++++++|.+....+. .+..+..+..+...++.+....+..|.+++ .++.|++++|+++...
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~  169 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  169 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence            56555566677777777777777776533221 223344555555566666655555555543 5666777777775544


Q ss_pred             hhhcCCCCCCCe-EECcCCcCCCCchhH-hhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          306 LDEIGNLKSLSN-INLSLNKLNGSIPLS-LTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       306 ~~~l~~l~~L~~-L~L~~N~l~~~~p~~-l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                      +..+.. .++.. +++++|.++ .+|.. +..++ +|++|++++|+++...+..|.++++|
T Consensus       170 ~~~~~~-~~l~~~~~l~~n~l~-~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         170 NCAFNG-TQLDELNLSDNNNLE-ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             TTTTTT-CCEEEEECTTCTTCC-CCCTTTTTTSC-CCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             cccccc-hhhhccccccccccc-cccHHHhcCCC-CCCEEECCCCcCCccCHHHHcCCccc
Confidence            444433 33333 345666666 45443 44455 57777777777774334445555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=6.2e-17  Score=137.76  Aligned_cols=187  Identities=26%  Similarity=0.324  Sum_probs=152.6

Q ss_pred             ccceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEc
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYL  224 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L  224 (365)
                      ...|+.|++++|.+... +....-..++.++++.|.+++..+  +..+++|+++++++|.++.. + .+.++++|+++++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i-~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc-c-ccccccccccccc
Confidence            34689999999998653 443344567889999999986544  88999999999999999843 3 5788999999999


Q ss_pred             ccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCc
Q 045705          225 DSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGS  304 (365)
Q Consensus       225 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  304 (365)
                      +++...+  ...+...+.++.+.++++.+...  ..+..+++|+.|++++|.+...  ..++++++|+.|++++|++.+.
T Consensus       115 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         115 TSTQITD--VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             TTSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccc--cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccCCC
Confidence            9998864  34577888999999999988743  3467889999999999998754  4588999999999999999764


Q ss_pred             chhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccC
Q 045705          305 ILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSS  347 (365)
Q Consensus       305 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~  347 (365)
                        ..+..+++|++|+|++|+++ .++ .+..++ +|+.|++++
T Consensus       189 --~~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~-~L~~L~lsn  226 (227)
T d1h6ua2         189 --SPLASLPNLIEVHLKNNQIS-DVS-PLANTS-NLFIVTLTN  226 (227)
T ss_dssp             --GGGGGCTTCCEEECTTSCCC-BCG-GGTTCT-TCCEEEEEE
T ss_pred             --hhhcCCCCCCEEECcCCcCC-CCc-ccccCC-CCCEEEeeC
Confidence              34788999999999999999 555 367777 799999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=135.51  Aligned_cols=198  Identities=19%  Similarity=0.138  Sum_probs=146.4

Q ss_pred             cceeeeccCCCCCCCcchhhhcc-ccccceecccccccccc-hhhhhCCCCCcEEEeeC-CcCCCccCcCCCCCCCCcEE
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVT-WPTWLLYLDINAISGSI-LDEIRSLKSLFNLRLGD-NTLSGSIPLSLGNLTNLATL  222 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~-~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~~l~~L~~L  222 (365)
                      +.++.||+++|.+....+..+.. ..++.++++.|.+...+ +..|..++.++.+++.. |.+....+..|.++++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46899999999996544444443 46788999999987644 55788899999999864 67887788889999999999


Q ss_pred             EcccCcCCCcchh-hhcCCCCCCEEEcccCcCCCCCcccCCCCC-CCCEEECCCCcCCCCCCccCcCCCccceE-Eeecc
Q 045705          223 YLDSNALSGSILN-EIGNLKSLYYLELTSNTLSGSIPLPLGNLT-NLVVLELSDNKLSGLIPPSFGNLTNLTTL-YVYKN  299 (365)
Q Consensus       223 ~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L-~L~~n  299 (365)
                      ++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|.++...+..+. .++++.+ ++++|
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccccc
Confidence            9999998743332 234456666667777777755566666654 789999999999966555554 4555444 56888


Q ss_pred             ccCCcchhhcCCCCCCCeEECcCCcCCCCchh-HhhhccCCCcEEEcc
Q 045705          300 SIFGSILDEIGNLKSLSNINLSLNKLNGSIPL-SLTNLTNSLEVVCLS  346 (365)
Q Consensus       300 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~~~~~L~~L~l~  346 (365)
                      .++...+..|.++++|++|+|++|+++ .+|. .+..++ .|+.+++.
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~-~L~~l~~~  233 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLK-KLRARSTY  233 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCC-EEESSSEE
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCc-ccccCcCC
Confidence            887776778999999999999999999 5554 344444 45555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.1e-16  Score=125.91  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccc
Q 045705          213 LGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLT  292 (365)
Q Consensus       213 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  292 (365)
                      +.+..++++|+|++|.|+ .++..+..+++|++|++++|.++ .+ +.+..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            334555666666666665 33444455666666666666666 23 2356666777777777777655555556677777


Q ss_pred             eEEeeccccCCcc-hhhcCCCCCCCeEECcCCcCCCCch----hHhhhccCCCcEEE
Q 045705          293 TLYVYKNSIFGSI-LDEIGNLKSLSNINLSLNKLNGSIP----LSLTNLTNSLEVVC  344 (365)
Q Consensus       293 ~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~p----~~l~~~~~~L~~L~  344 (365)
                      +|++++|++.... ...+..+++|++|++++|+++ ..|    ..+..++ +|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp-~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP-QVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT-TCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCC-CcCeeC
Confidence            7777777775432 245667778888888888776 333    2455666 688776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.4e-16  Score=125.02  Aligned_cols=128  Identities=18%  Similarity=0.154  Sum_probs=100.0

Q ss_pred             hhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCC
Q 045705          189 IRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLV  268 (365)
Q Consensus       189 ~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  268 (365)
                      +.++.+++.|+|++|+|+. ++..+..+++|++|++++|.|+. + +.+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            4566788899999999984 46666778899999999999873 4 4578889999999999998855555566788999


Q ss_pred             EEECCCCcCCCCCC-ccCcCCCccceEEeeccccCCcc---hhhcCCCCCCCeEE
Q 045705          269 VLELSDNKLSGLIP-PSFGNLTNLTTLYVYKNSIFGSI---LDEIGNLKSLSNIN  319 (365)
Q Consensus       269 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  319 (365)
                      +|++++|.++.... ..+..+++|++|++++|.+....   +..+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999875422 46778899999999999885542   23567788999887

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.6e-15  Score=113.99  Aligned_cols=87  Identities=30%  Similarity=0.379  Sum_probs=36.7

Q ss_pred             hcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcc-hhhcCCCCCC
Q 045705          237 IGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSI-LDEIGNLKSL  315 (365)
Q Consensus       237 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L  315 (365)
                      +..+++|++|++++|.++ .+|..++.+++|++|++++|.++..  +.+..+++|++|++++|++.+.. ...+..+++|
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            334444444444444443 2333344444444444444444422  12344444444444444443321 1334444555


Q ss_pred             CeEECcCCcCC
Q 045705          316 SNINLSLNKLN  326 (365)
Q Consensus       316 ~~L~L~~N~l~  326 (365)
                      +.|++++|+++
T Consensus        93 ~~L~l~~N~i~  103 (124)
T d1dcea3          93 VLLNLQGNSLC  103 (124)
T ss_dssp             CEEECTTSGGG
T ss_pred             CEEECCCCcCC
Confidence            55555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2.3e-15  Score=115.07  Aligned_cols=103  Identities=24%  Similarity=0.283  Sum_probs=74.3

Q ss_pred             cEEEeeCCcCCCccCcCCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC
Q 045705          196 FNLRLGDNTLSGSIPLSLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN  275 (365)
Q Consensus       196 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  275 (365)
                      |+|++++|+++ .++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++. +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            46777888777 333 3677777888888888876 456677778888888888888773 34 4777788888888888


Q ss_pred             cCCCCC-CccCcCCCccceEEeeccccCC
Q 045705          276 KLSGLI-PPSFGNLTNLTTLYVYKNSIFG  303 (365)
Q Consensus       276 ~l~~~~-~~~l~~l~~L~~L~L~~n~l~~  303 (365)
                      +++... ...+..+++|+.|++++|.+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            877543 2456777788888888887753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=5.5e-14  Score=126.50  Aligned_cols=199  Identities=23%  Similarity=0.198  Sum_probs=121.4

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      +.|++|++++|+++ .+|...  ..++.+++..|+++.. ++ +  .+.|++|++++|.+. .+|. ++.+++|++|+++
T Consensus        58 ~~L~~L~Ls~N~l~-~lp~~~--~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCNSLT-ELPELP--QSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSSCCS-SCCCCC--TTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCc-ccccch--hhhhhhhhhhcccchh-hh-h--ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            46778888888775 445432  3456677777776632 21 1  146888888888887 4443 5678888888888


Q ss_pred             cCcCCCcch------------------hhhcCCCCCCEEEcccCcCCCCC------------------cccCCCCCCCCE
Q 045705          226 SNALSGSIL------------------NEIGNLKSLYYLELTSNTLSGSI------------------PLPLGNLTNLVV  269 (365)
Q Consensus       226 ~n~l~~~~~------------------~~l~~l~~L~~L~L~~n~l~~~~------------------~~~~~~l~~L~~  269 (365)
                      +|.+.....                  ..+..++.++.+++.+|......                  ...+..++.|+.
T Consensus       129 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~  208 (353)
T d1jl5a_         129 NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT  208 (353)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCE
T ss_pred             cccccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccc
Confidence            887652211                  12344556666776666543210                  112334556677


Q ss_pred             EECCCCcCCCCC----------------------C----------------------------------ccCcCCCccce
Q 045705          270 LELSDNKLSGLI----------------------P----------------------------------PSFGNLTNLTT  293 (365)
Q Consensus       270 L~L~~n~l~~~~----------------------~----------------------------------~~l~~l~~L~~  293 (365)
                      +++++|......                      +                                  .....+++|++
T Consensus       209 l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  288 (353)
T d1jl5a_         209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE  288 (353)
T ss_dssp             EECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCE
Confidence            776665433110                      0                                  00112357888


Q ss_pred             EEeeccccCCcchhhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCC
Q 045705          294 LYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       294 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  363 (365)
                      |++++|++.. +|.   .+++|+.|+|++|+|+ .+|.    .+.+|++|++++|+++ .+|.....+..
T Consensus       289 L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~L~-~l~~----~~~~L~~L~L~~N~L~-~lp~~~~~L~~  348 (353)
T d1jl5a_         289 LNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLR-EFPDIPESVED  348 (353)
T ss_dssp             EECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCCCTTCCE
T ss_pred             EECCCCccCc-ccc---ccCCCCEEECCCCcCC-cccc----ccCCCCEEECcCCcCC-CCCccccccCe
Confidence            8888888853 343   3567888888888888 6664    2337889999999988 66655444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.6e-16  Score=136.92  Aligned_cols=215  Identities=18%  Similarity=0.165  Sum_probs=141.2

Q ss_pred             eeeccCCCCCCCcchhhhccccccceecccccccccc-hhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcccC
Q 045705          149 HVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSI-LDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLDSN  227 (365)
Q Consensus       149 ~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  227 (365)
                      ..+.++................++.++++.+.++... ...+..+++|++|++++|.+++.....++.+++|++|++++|
T Consensus        26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            3444454444333333333445677788888776543 445677889999999999888777777888889999999886


Q ss_pred             -cCCCcc-hhhhcCCCCCCEEEcccCc-CCCC-CcccCC-CCCCCCEEECCCCc--CCCC-CCccCcCCCccceEEeecc
Q 045705          228 -ALSGSI-LNEIGNLKSLYYLELTSNT-LSGS-IPLPLG-NLTNLVVLELSDNK--LSGL-IPPSFGNLTNLTTLYVYKN  299 (365)
Q Consensus       228 -~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~L~~n  299 (365)
                       .++... ......+++|++|++++|. ++.. +...+. ..++|+.|+++++.  ++.. +...+.++++|++|++++|
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence             454222 2224567889999998864 3311 111222 34678999998753  3321 2223356788999999886


Q ss_pred             -ccCCcchhhcCCCCCCCeEECcCC-cCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCCC
Q 045705          300 -SIFGSILDEIGNLKSLSNINLSLN-KLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSSL  364 (365)
Q Consensus       300 -~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L  364 (365)
                       .+++.....+.++++|++|++++| .+++.....+..++ +|+.|+++++.-.+.++.....+++|
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC-CCCEEeeeCCCCHHHHHHHHHhCccc
Confidence             466677778888899999999985 67766666777777 79999999883333333333445544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=133.35  Aligned_cols=213  Identities=18%  Similarity=0.188  Sum_probs=152.5

Q ss_pred             ccceeeeccCCCCCCCcchhhhcc--ccccceecccccccccchhhhhCCCCCcEEEeeCC-cCCCc-cCcCCCCCCCCc
Q 045705          145 SMLFHVLDFPHTAYSDSMEEAHVT--WPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDN-TLSGS-IPLSLGNLTNLA  220 (365)
Q Consensus       145 ~~~L~~L~ls~n~l~~~~~~~~~~--~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~i~~~-~~~~~~~l~~L~  220 (365)
                      ...|+.||++++.+.+........  ..++.++|+.+.++...+..++++++|++|++++| .+++. +.....++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            346999999999886554333322  36778899999998888899999999999999996 55532 122235689999


Q ss_pred             EEEcccCc-CCCc-chhhhcC-CCCCCEEEcccCc--CCCC-CcccCCCCCCCCEEECCCCc-CCCCCCccCcCCCccce
Q 045705          221 TLYLDSNA-LSGS-ILNEIGN-LKSLYYLELTSNT--LSGS-IPLPLGNLTNLVVLELSDNK-LSGLIPPSFGNLTNLTT  293 (365)
Q Consensus       221 ~L~Ls~n~-l~~~-~~~~l~~-l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~  293 (365)
                      +|++++|. ++.. ....+.. .++|+.|+++++.  ++.. +......+++|++|++++|. +++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            99999974 4421 2233333 5789999999763  3321 22234568999999999874 66666678889999999


Q ss_pred             EEeecc-ccCCcchhhcCCCCCCCeEECcCCcCCCC-chhHhhhccCCCcEEEccCccccccCChhhhcCC
Q 045705          294 LYVYKN-SIFGSILDEIGNLKSLSNINLSLNKLNGS-IPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHS  362 (365)
Q Consensus       294 L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  362 (365)
                      |++++| .+++.....+.++++|+.|+++++ ++.. ++.....++    .|++..+.+++..+..+++..
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp----~L~i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALP----HLQINCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHST----TSEESCCCSCCTTCSSCSSTT
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCc----cccccCccCCCCCCCccCccc
Confidence            999995 677776777889999999999998 4433 333223343    456688888877777666544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=6.8e-16  Score=128.20  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=70.6

Q ss_pred             CCCCCCCCcEEEcccCcCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCcc
Q 045705          212 SLGNLTNLATLYLDSNALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNL  291 (365)
Q Consensus       212 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  291 (365)
                      ++..+++|++|+|++|.|+. ++ .+..+++|++|++++|.++ .++.....+++|++|++++|.++..  ..+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccc
Confidence            34444455555555555542 22 3445555555555555554 3333333334566666666666533  335566667


Q ss_pred             ceEEeeccccCCcch-hhcCCCCCCCeEECcCCcCCCCchh----------HhhhccCCCcEEEccCcccc
Q 045705          292 TTLYVYKNSIFGSIL-DEIGNLKSLSNINLSLNKLNGSIPL----------SLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       292 ~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~p~----------~l~~~~~~L~~L~l~~n~l~  351 (365)
                      +.|++++|+++.... ..+..+++|+.|+|++|+++...+.          .+..++ +|+.||  +.+++
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp-~L~~LD--~~~I~  185 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKKLD--GMPVD  185 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCS-SCCEES--SGGGT
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCC-CcCEeC--CccCC
Confidence            777777776654322 4566677777777777766532211          145566 687775  44554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.7e-13  Score=106.26  Aligned_cols=142  Identities=17%  Similarity=0.090  Sum_probs=74.0

Q ss_pred             CcEEEcccCcCCCcchhhhcCCCCCCEEEcccC-cCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEee
Q 045705          219 LATLYLDSNALSGSILNEIGNLKSLYYLELTSN-TLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVY  297 (365)
Q Consensus       219 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  297 (365)
                      .++++.+++.+. ..|..+..+++|++|++++| .++...+..|.++++|+.|++++|+++.+.+.+|..+++|++|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            344555555544 34455555556666666544 3554444456666666666666666665555666666666666666


Q ss_pred             ccccCCcchhhcCCCCCCCeEECcCCcCCC-CchhHhhhccCCCcEEEccCccccccCChhhhcCCC
Q 045705          298 KNSIFGSILDEIGNLKSLSNINLSLNKLNG-SIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       298 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  363 (365)
                      +|+++...+..+..+ .|+.|+|++|++.- .-..++.... ......+..++++-..|..+.+++.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~-~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWE-EEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHH-HTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHH-HhccCccCcCCcEECcChHHCcCCc
Confidence            666654444444333 56667777766641 1112222221 1222333445555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=1.5e-14  Score=130.51  Aligned_cols=212  Identities=17%  Similarity=0.170  Sum_probs=130.7

Q ss_pred             cccccccceeeeccCCCCCCCcc---hhhh--------ccccccceecccccccccc----hhhhhCCCCCcEEEeeCCc
Q 045705          140 QSVMFSMLFHVLDFPHTAYSDSM---EEAH--------VTWPTWLLYLDINAISGSI----LDEIRSLKSLFNLRLGDNT  204 (365)
Q Consensus       140 ~~~~~~~~L~~L~ls~n~l~~~~---~~~~--------~~~~~~~l~L~~n~l~~~~----~~~~~~l~~L~~L~ls~n~  204 (365)
                      ..+...+.|+.++++++......   +...        ....++.++|+.|.++...    ...+...++|++|++++|.
T Consensus        53 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            33445556777777766443221   1111        1124566777777776542    3334456778888887776


Q ss_pred             CCCccCc-------------CCCCCCCCcEEEcccCcCCCc----chhhhcCCCCCCEEEcccCcCCCC-----CcccCC
Q 045705          205 LSGSIPL-------------SLGNLTNLATLYLDSNALSGS----ILNEIGNLKSLYYLELTSNTLSGS-----IPLPLG  262 (365)
Q Consensus       205 i~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~  262 (365)
                      +......             .....+.|+.+++++|.+...    +...+...+.|++|++++|.+...     +...+.
T Consensus       133 l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~  212 (344)
T d2ca6a1         133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  212 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhc
Confidence            6421100             012456777888888777532    233455677888888888887631     233456


Q ss_pred             CCCCCCEEECCCCcCCCC----CCccCcCCCccceEEeeccccCCcch----hhcCC--CCCCCeEECcCCcCCCC----
Q 045705          263 NLTNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYVYKNSIFGSIL----DEIGN--LKSLSNINLSLNKLNGS----  328 (365)
Q Consensus       263 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~--l~~L~~L~L~~N~l~~~----  328 (365)
                      .+++|+.|++++|.++..    +...+..+++|++|++++|.+.+...    ..+..  ...|++|++++|.++..    
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            678888899988887532    23456677888899999888865432    23322  35788899999988743    


Q ss_pred             chhHhh-hccCCCcEEEccCccccc
Q 045705          329 IPLSLT-NLTNSLEVVCLSSNHIVG  352 (365)
Q Consensus       329 ~p~~l~-~~~~~L~~L~l~~n~l~~  352 (365)
                      +...+. ..+ .|+.|++++|++..
T Consensus       293 l~~~l~~~~~-~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMP-DLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCT-TCCEEECTTSBSCT
T ss_pred             HHHHHHccCC-CCCEEECCCCcCCC
Confidence            233333 344 68899999998873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=8e-15  Score=121.61  Aligned_cols=140  Identities=22%  Similarity=0.280  Sum_probs=109.8

Q ss_pred             CCcEEEcccC--cCCCcchhhhcCCCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEE
Q 045705          218 NLATLYLDSN--ALSGSILNEIGNLKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLY  295 (365)
Q Consensus       218 ~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  295 (365)
                      .++.+++++.  .+. .++.++..+++|++|++++|.++ .++ .+..+++|++|++++|.++. ++..+..+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-ccccccccccccccc
Confidence            3445555543  243 56788999999999999999998 444 58889999999999999984 455555667899999


Q ss_pred             eeccccCCcchhhcCCCCCCCeEECcCCcCCCCch--hHhhhccCCCcEEEccCccccccCChh----------hhcCCC
Q 045705          296 VYKNSIFGSILDEIGNLKSLSNINLSLNKLNGSIP--LSLTNLTNSLEVVCLSSNHIVGEIPLE----------LRKHSS  363 (365)
Q Consensus       296 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~p--~~l~~~~~~L~~L~l~~n~l~~~~p~~----------l~~l~~  363 (365)
                      +++|.++..  ..+..+++|+.|++++|+++ .++  ..+..++ +|+.|++++|+++...+..          +..+|+
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~  175 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALD-KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTT-TCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSS
T ss_pred             ccccccccc--ccccccccccccccccchhc-cccccccccCCC-ccceeecCCCccccCcccccchhhHHHHHHHHCCC
Confidence            999999754  35778899999999999998 554  4577787 7999999999998655532          567777


Q ss_pred             CC
Q 045705          364 LV  365 (365)
Q Consensus       364 L~  365 (365)
                      |+
T Consensus       176 L~  177 (198)
T d1m9la_         176 LK  177 (198)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.2e-12  Score=103.82  Aligned_cols=109  Identities=24%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             CCCCCEEEcccCcCCCCCcccCCCCCCCCEEECCCC-cCCCCCCccCcCCCccceEEeeccccCCcchhhcCCCCCCCeE
Q 045705          240 LKSLYYLELTSNTLSGSIPLPLGNLTNLVVLELSDN-KLSGLIPPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNI  318 (365)
Q Consensus       240 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  318 (365)
                      +...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+++...+.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344567888888887 66788889999999999876 5887778899999999999999999988889999999999999


Q ss_pred             ECcCCcCCCCchhHhhhccCCCcEEEccCcccc
Q 045705          319 NLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIV  351 (365)
Q Consensus       319 ~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~  351 (365)
                      +|++|+++ .+|...+... .|+.|+|++|++.
T Consensus        86 ~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             eccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            99999999 7777766666 6999999999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=9.5e-14  Score=125.21  Aligned_cols=162  Identities=19%  Similarity=0.176  Sum_probs=72.4

Q ss_pred             hCCCCCcEEEeeCCcCCCc----cCcCCCCCCCCcEEEcccCcCCCcchhh-------------hcCCCCCCEEEcccCc
Q 045705          190 RSLKSLFNLRLGDNTLSGS----IPLSLGNLTNLATLYLDSNALSGSILNE-------------IGNLKSLYYLELTSNT  252 (365)
Q Consensus       190 ~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------l~~l~~L~~L~L~~n~  252 (365)
                      ..+++|+.|++++|.+...    +...+...++|++|++++|.+.......             ....+.|+.+.+++|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3445555555555555432    1222233455555555555543111000             1234455555555555


Q ss_pred             CCCC----CcccCCCCCCCCEEECCCCcCCCC-----CCccCcCCCccceEEeeccccCCc----chhhcCCCCCCCeEE
Q 045705          253 LSGS----IPLPLGNLTNLVVLELSDNKLSGL-----IPPSFGNLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNIN  319 (365)
Q Consensus       253 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~  319 (365)
                      +...    +...+...+.|++|++++|.+...     +...+..+++|+.|++++|.++..    +...+..+++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            4421    111223345555555555555421     122344455555555555554322    223344555555555


Q ss_pred             CcCCcCCCCchhHhh----hcc-CCCcEEEccCcccc
Q 045705          320 LSLNKLNGSIPLSLT----NLT-NSLEVVCLSSNHIV  351 (365)
Q Consensus       320 L~~N~l~~~~p~~l~----~~~-~~L~~L~l~~n~l~  351 (365)
                      |++|.+++.....+.    ... ..|++|++++|+++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            555555532222221    111 13555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.35  E-value=1.1e-11  Score=111.12  Aligned_cols=199  Identities=25%  Similarity=0.228  Sum_probs=140.3

Q ss_pred             cceeeeccCCCCCCCcchhhhccccccceecccccccccchhhhhCCCCCcEEEeeCCcCCCccCcCCCCCCCCcEEEcc
Q 045705          146 MLFHVLDFPHTAYSDSMEEAHVTWPTWLLYLDINAISGSILDEIRSLKSLFNLRLGDNTLSGSIPLSLGNLTNLATLYLD  225 (365)
Q Consensus       146 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls  225 (365)
                      ..+++|||+++.++ .+|+.  ...++.++|++|+++ .+|+.   +.+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~--~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC--CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCC-CCCCC--CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            46899999999995 46653  235788999999998 55654   468999999999998 33321   2469999999


Q ss_pred             cCcCCCcchhhhcCCCCCCEEEcccCcCCCCCc------------------ccCCCCCCCCEEECCCCcCCCCC------
Q 045705          226 SNALSGSILNEIGNLKSLYYLELTSNTLSGSIP------------------LPLGNLTNLVVLELSDNKLSGLI------  281 (365)
Q Consensus       226 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~------  281 (365)
                      +|.+. .+|. ++.+++|++|++++|.+.....                  ..+..++.++.+++++|......      
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             ccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            99998 4554 6789999999999987763221                  22445667888998887665321      


Q ss_pred             ------------CccCcCCCccceEEeeccccCCcc----------------------h---------------------
Q 045705          282 ------------PPSFGNLTNLTTLYVYKNSIFGSI----------------------L---------------------  306 (365)
Q Consensus       282 ------------~~~l~~l~~L~~L~L~~n~l~~~~----------------------~---------------------  306 (365)
                                  ...+..++.|+.+++++|......                      +                     
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        123445677888887766542210                      0                     


Q ss_pred             -------------hhcCCCCCCCeEECcCCcCCCCchhHhhhccCCCcEEEccCccccccCChhhhcCCC
Q 045705          307 -------------DEIGNLKSLSNINLSLNKLNGSIPLSLTNLTNSLEVVCLSSNHIVGEIPLELRKHSS  363 (365)
Q Consensus       307 -------------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  363 (365)
                                   .....+++|++|+|++|+++ .+|..   ++ +|+.|++++|+|+ .+|..+.++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~-~L~~L~L~~N~L~-~l~~~~~~L~~  328 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PP-RLERLIASFNHLA-EVPELPQNLKQ  328 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CT-TCCEEECCSSCCS-CCCCCCTTCCE
T ss_pred             hhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cC-CCCEEECCCCcCC-ccccccCCCCE
Confidence                         00112467999999999998 77743   44 7999999999998 77876555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9e-14  Score=129.42  Aligned_cols=88  Identities=19%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             ccccceeeeccCCCCCCCcch----hhh-ccccccceecccccccccchhhhh-----CCCCCcEEEeeCCcCCCc----
Q 045705          143 MFSMLFHVLDFPHTAYSDSME----EAH-VTWPTWLLYLDINAISGSILDEIR-----SLKSLFNLRLGDNTLSGS----  208 (365)
Q Consensus       143 ~~~~~L~~L~ls~n~l~~~~~----~~~-~~~~~~~l~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~i~~~----  208 (365)
                      ...+.+++|+|++|.++....    ..+ ....++.++|+.|.++......+.     ...+|++|++++|.+++.    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            334566777777777653221    111 122466677777776543222222     124677777777777643    


Q ss_pred             cCcCCCCCCCCcEEEcccCcCC
Q 045705          209 IPLSLGNLTNLATLYLDSNALS  230 (365)
Q Consensus       209 ~~~~~~~l~~L~~L~Ls~n~l~  230 (365)
                      ++..+..+++|++|++++|.++
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccchhhccccccccccccccch
Confidence            3445666777778877777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.5e-11  Score=110.72  Aligned_cols=168  Identities=20%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             CCCCCcEEEeeCCcCCCcc----CcCCCCCCCCcEEEcccCcCCCcchhhh-----cCCCCCCEEEcccCcCCCCCcc--
Q 045705          191 SLKSLFNLRLGDNTLSGSI----PLSLGNLTNLATLYLDSNALSGSILNEI-----GNLKSLYYLELTSNTLSGSIPL--  259 (365)
Q Consensus       191 ~l~~L~~L~ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~--  259 (365)
                      ....++.+++++|.+....    ...+...+.++.+++++|.+.......+     .....|+.+++++|.+......  
T Consensus       253 ~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         253 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhc
Confidence            3456677777776665221    1223345667777777776643222211     1234677777777766533222  


Q ss_pred             --cCCCCCCCCEEECCCCcCCCC----CCccCc-CCCccceEEeeccccCCc----chhhcCCCCCCCeEECcCCcCCCC
Q 045705          260 --PLGNLTNLVVLELSDNKLSGL----IPPSFG-NLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINLSLNKLNGS  328 (365)
Q Consensus       260 --~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~  328 (365)
                        .+...++|++|+|++|.+...    ++..+. ..+.|++|+|++|.+++.    +...+..+++|++|+|++|+++..
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence              223445677777777776532    122222 345677777777777543    234455567777777777777643


Q ss_pred             chhHhhh----ccCCCcEEEccCccccccCChhh
Q 045705          329 IPLSLTN----LTNSLEVVCLSSNHIVGEIPLEL  358 (365)
Q Consensus       329 ~p~~l~~----~~~~L~~L~l~~n~l~~~~p~~l  358 (365)
                      ....+..    ....|+.|++++|.+.+..+..+
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            3333321    12247777777777765444433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2e-09  Score=85.41  Aligned_cols=64  Identities=23%  Similarity=0.184  Sum_probs=32.5

Q ss_pred             CCCCCEEECCCCcCCCCC--CccCcCCCccceEEeeccccCCcchhhcCCCCCCCeEECcCCcCCC
Q 045705          264 LTNLVVLELSDNKLSGLI--PPSFGNLTNLTTLYVYKNSIFGSILDEIGNLKSLSNINLSLNKLNG  327 (365)
Q Consensus       264 l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~  327 (365)
                      +++|++|++++|+++...  +..+..+++|+.|++++|.++....-.+.....|+.|++++|+++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            444444444444444321  2234455666666666666654333222233456677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.1e-09  Score=85.27  Aligned_cols=86  Identities=21%  Similarity=0.130  Sum_probs=49.4

Q ss_pred             hhhhcCCCCCCEEEcccCcCCCCC--cccCCCCCCCCEEECCCCcCCCCCCccCcCCCccceEEeeccccCCcch-----
Q 045705          234 LNEIGNLKSLYYLELTSNTLSGSI--PLPLGNLTNLVVLELSDNKLSGLIPPSFGNLTNLTTLYVYKNSIFGSIL-----  306 (365)
Q Consensus       234 ~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----  306 (365)
                      +..+..+++|++|++++|+++...  +..+..+++|+.|++++|.++...+-.+....+|+.|++++|.+.....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334455667777777777776332  2334556777777777777765432222233457777777777654322     


Q ss_pred             --hhcCCCCCCCeEE
Q 045705          307 --DEIGNLKSLSNIN  319 (365)
Q Consensus       307 --~~l~~l~~L~~L~  319 (365)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2245566666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.04  E-value=8.9e-07  Score=69.98  Aligned_cols=16  Identities=6%  Similarity=-0.010  Sum_probs=7.5

Q ss_pred             cCCCCCCCeEECcCCc
Q 045705          309 IGNLKSLSNINLSLNK  324 (365)
Q Consensus       309 l~~l~~L~~L~L~~N~  324 (365)
                      +...+.|++|++++|.
T Consensus        96 L~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          96 TLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTTTCCCSEEECCCCS
T ss_pred             HHhCCcCCEEECCCCc
Confidence            3444445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=2.7e-06  Score=67.14  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             CCCCCCcEEEcccC-cCCCc----chhhhcCCCCCCEEEcccCcCCC----CCcccCCCCCCCCEEECCCCcCCCC----
Q 045705          214 GNLTNLATLYLDSN-ALSGS----ILNEIGNLKSLYYLELTSNTLSG----SIPLPLGNLTNLVVLELSDNKLSGL----  280 (365)
Q Consensus       214 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----  280 (365)
                      .+.+.|++|+|+++ .++..    +...+...++|++|++++|.+..    .+...+...+.|++|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35688999999974 56532    33457788899999999998863    2233455678899999999998754    


Q ss_pred             CCccCcCCCccceEEeeccccCCc-------chhhcCCCCCCCeEECcCCcC
Q 045705          281 IPPSFGNLTNLTTLYVYKNSIFGS-------ILDEIGNLKSLSNINLSLNKL  325 (365)
Q Consensus       281 ~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~L~~N~l  325 (365)
                      +..++...++|++|++++|.+...       +...+...+.|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            234567778999999999865432       334555667888888876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.51  E-value=1.2e-05  Score=63.14  Aligned_cols=63  Identities=22%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             CCCccceEEeeccccCCc----chhhcCCCCCCCeEEC--cCCcCCC----CchhHhhhccCCCcEEEccCccc
Q 045705          287 NLTNLTTLYVYKNSIFGS----ILDEIGNLKSLSNINL--SLNKLNG----SIPLSLTNLTNSLEVVCLSSNHI  350 (365)
Q Consensus       287 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~----~~p~~l~~~~~~L~~L~l~~n~l  350 (365)
                      ..++++.+++++|.+.+.    +...+...+.|+.++|  ++|.+..    .+...+...+ .|+.|+++.+..
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~-~L~~L~l~~~~~  144 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQ  144 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSH
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCC-CcCEEeCcCCCC
Confidence            344555555555554332    2234445556655333  3445543    2233333444 566666665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.46  E-value=9.9e-06  Score=63.61  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             CCCCEEECCCCcCCCC----CCccCcCCCccceEEe--eccccCC----cchhhcCCCCCCCeEECcCCcC
Q 045705          265 TNLVVLELSDNKLSGL----IPPSFGNLTNLTTLYV--YKNSIFG----SILDEIGNLKSLSNINLSLNKL  325 (365)
Q Consensus       265 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~----~~~~~l~~l~~L~~L~L~~N~l  325 (365)
                      +.++.+++++|.+...    +...+...++|+.++|  ++|.+.+    .+...+...+.|+.|+++.+..
T Consensus        74 ~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            4444555554444322    1233444555655444  3445533    2234455667777777766543