Citrus Sinensis ID: 045715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccccccccccccccccccccHHccccccccEEEccccccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MHGYKGCLETERTALLEIKSFFisvsdigyddkilpswvgeddgmpsdccddwvgvkcsaTTRRVMQLSLNyttkfnysyNSVYWEGVLVLNMslfhpfeelqrldlpmnwftgiyenraydsfgsLRQLKMlnlgnndfndnilpyLNTLTSLTTLNLRynsiegsrtkqglaklknlealdlssnyyihgslegnff
Flexible Loop (DISEMBL)
mhgykgclETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLealdlssnyyihgslegnff
Low Complexity Region (SEG)
MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYlntltslttlnlRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF
Disordered region (IsUnstruct)
*****GCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG*******
Disordered Region (DISOPRED)
****KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF
Disordered Region (DISEMBL)
MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF
Disordered Region (DISPRO)
**GYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH*SL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q0WR59	1048	Probable inactive recepto	no	no	0.824	0.156	0.299	9e-08
Q9LRT1	1016	Probably inactive leucine	no	no	0.723	0.141	0.322	2e-06
Q9SH71	587	Putative inactive recepto	no	no	0.623	0.211	0.307	2e-05
C0LGT6	1031	LRR receptor-like serine/	no	no	0.663	0.128	0.293	2e-05
Q9C8M9	719	Protein STRUBBELIG-RECEPT	no	no	0.673	0.186	0.331	3e-05
Q9FL63	614	Inactive leucine-rich rep	no	no	0.633	0.205	0.300	5e-05
Q00874	372	DNA-damage-repair/tolerat	no	no	0.723	0.387	0.264	8e-05
Q9C9H7	847	Receptor-like protein 12	no	no	0.834	0.195	0.284	0.0001
Q9SGP2	996	Receptor-like protein kin	no	no	0.758	0.151	0.274	0.0002
C0LGH8	664	Probable LRR receptor-lik	no	no	0.643	0.192	0.304	0.0002

>sp|Q0WR59|Y5020_ARATH Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 23/187 (12%)

Query: 2   HGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGM-PSDCCDDWVGVKCSA 60
           HG     ETE  +LLE   F   + D     +I  SW        PS C +DW G+ C  
Sbjct: 17  HGANAVTETELRSLLE---FRKGIRDETSHQRI--SWSDTSSLTDPSTCPNDWPGISCDP 71

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRA 120
            T  ++ ++L+           +  E    L  S       L+ L L  N F+G    R 
Sbjct: 72  ETGSIIAINLDR--------RGLSGE----LKFSTLSGLTRLRNLSLSGNSFSG----RV 115

Query: 121 YDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180
             S G +  L+ L+L +N F   I   ++ L SL  LNL  N  EG     G   L+ L 
Sbjct: 116 VPSLGGISSLQHLDLSDNGFYGPIPGRISELWSLNHLNLSSNKFEGG-FPSGFRNLQQLR 174

Query: 181 ALDLSSN 187
           +LDL  N
Sbjct: 175 SLDLHKN 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 84/189 (44%), Gaps = 45/189 (23%)

Query: 35  LPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLN---YTTKFNYSYNSVYWEGVLVL 91
           L SW  EDD  P   C  W  VKC+  T RV++LSL+    T K N     +    VL L
Sbjct: 54  LESWT-EDDNTP---CS-WSYVKCNPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSL 108

Query: 92  -------NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI 144
                  N++       LQ+LDL  N  +G    +   S GS+  L+ L+L  N F+  +
Sbjct: 109 SNNNFTGNINALSNNNHLQKLDLSHNNLSG----QIPSSLGSITSLQHLDLTGNSFSGTL 164

Query: 145 LPYL-NTLTSLTTLNLRYNSIEG-----------------SRTK--------QGLAKLKN 178
              L N  +SL  L+L +N +EG                 SR +         G+ +L+ 
Sbjct: 165 SDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLER 224

Query: 179 LEALDLSSN 187
           L ALDLSSN
Sbjct: 225 LRALDLSSN 233

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 67/169 (39%), Gaps = 45/169 (26%)

Query: 47  SDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPF-----EE 101
           SD C  W GV C+    R++ + L     FN                 L  PF       
Sbjct: 47  SDVCHSWTGVTCNENGDRIVSVRLP-AVGFN----------------GLIPPFTISRLSS 89

Query: 102 LQRLDLPMNWFTG--------------IYENRAYDS------FGSLRQLKMLNLGNNDFN 141
           L+ L L  N FTG              +Y    + S      F  L+ LK+L+L NN FN
Sbjct: 90  LKFLSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPLLAIFSELKNLKVLDLSNNGFN 149

Query: 142 DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
            +I   L+ LTSL  LNL  NS  G      L KL     ++LS+N  I
Sbjct: 150 GSIPTSLSGLTSLQVLNLANNSFSGEIPNLHLPKLSQ---INLSNNKLI 195

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 73/184 (39%), Gaps = 52/184 (28%)

Query: 9   ETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQL 68
           ET+  ALLE KS    VS+     ++L SW        S  C+ W+GV C     RV+ L
Sbjct: 29  ETDMQALLEFKS---QVSE-NNKREVLASW-----NHSSPFCN-WIGVTCGRRRERVISL 78

Query: 69  SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128
                                  N+  F                TG+       S G+L 
Sbjct: 79  -----------------------NLGGFK--------------LTGVIS----PSIGNLS 97

Query: 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
            L++LNL +N F   I   +  L  L  LN+ YN +EG R    L+    L  +DLSSN+
Sbjct: 98  FLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEG-RIPSSLSNCSRLSTVDLSSNH 156

Query: 189 YIHG 192
             HG
Sbjct: 157 LGHG 160

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C8M9|SRF6_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 17/151 (11%)

Query: 49  CCDDWVGVKCSATTRRVMQLSLN----YTTKFNYSYNSVYWEGVLVL---NMSLFHPFE- 100
           C  +W GV CS +  RV Q+ L+      T   Y  + +     L L   N+    P++ 
Sbjct: 59  CGQNWRGVTCSGS--RVTQIKLSGLELSGTLGGYMLDKLTSLTELDLSSNNLGGDLPYQF 116

Query: 101 --ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              LQRL+L  N FTG     A  S   +  LK LNLG+N F   I    + L SLTTL+
Sbjct: 117 PPNLQRLNLANNQFTGA----ASYSLSQITPLKYLNLGHNQFKGQIAIDFSKLDSLTTLD 172

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
             +NS   S      + L +L++L L +N +
Sbjct: 173 FSFNSFTNS-LPATFSSLTSLKSLYLQNNQF 202

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL63|Y5410_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 17/143 (11%)

Query: 47  SDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLD 106
           S  C  W GV C     RV  L L   +               V+         ELQ L 
Sbjct: 56  SPVCTTWPGVTCDIDGTRVTALHLPGASLLG------------VIPPGTISRLSELQILS 103

Query: 107 LPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166
           L  N   G +       F  L++LK ++LGNN F+  +     T T+LT L+L  N   G
Sbjct: 104 LRSNGLRGPFP----IDFLQLKKLKAISLGNNRFSGPLPSDYATWTNLTVLDLYSNRFNG 159

Query: 167 SRTKQGLAKLKNLEALDLSSNYY 189
           S    G A L  L +L+L+ N +
Sbjct: 160 S-IPAGFANLTGLVSLNLAKNSF 181

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 47  SDCCDDWVGVKCSATTRRVMQLSLNYTTK---FNYSYNSVYWEGVLVLNMSLFHPFEELQ 103
           +DCC +W G+ C   + RV  +SL   ++   F  +  S Y  G +   +        L 
Sbjct: 57  TDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSGYMSGSIDPAVCDLTALTSLV 116

Query: 104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNS 163
             D     + GI          SL  L++L+L  N     I   +  L+ L  LNL  N 
Sbjct: 117 LAD-----WKGIT-GEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQ 170

Query: 164 IEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           + G      L  L  L+ L+L+ N  I G +  +F
Sbjct: 171 MSG-EIPASLTSLIELKHLELTEN-GITGVIPADF 203

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 81/204 (39%), Gaps = 38/204 (18%)

Query: 7   CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVM 66
           C + +R ALLE +  F     I     I+  W G  +   +DCC  W GV C+  + +V+
Sbjct: 34  CRDDQRDALLEFRGEF----PINASWHIMNQWRGPWNK-STDCCL-WNGVTCNDKSGQVI 87

Query: 67  QLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLP------------------ 108
            L +  T   NY          L  N SLF   + L+ LDL                   
Sbjct: 88  SLDIPNTFLNNY----------LKTNSSLFK-LQYLRHLDLTNCNLYGEIPSSLGNLSHL 136

Query: 109 --MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166
             +N +   +      S G+L QL+ L L NN     I   L  L+ L  L L  N + G
Sbjct: 137 TLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVG 196

Query: 167 SRTKQGLAKLKNLEALDLSSNYYI 190
            +    +  LK L  L L+SN  I
Sbjct: 197 -KIPDSIGDLKQLRNLSLASNNLI 219

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 42/193 (21%)

Query: 32  DKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSL---NYTTKF--------NYSY 80
           D  L SW   D    S C   W GV C+     V  + L   N    F        N ++
Sbjct: 34  DSYLSSWNSND---ASPC--RWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNLAH 88

Query: 81  NSVYWEGV---LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYD--------------- 122
            S+Y   +   L LN++     + LQ LDL  N  TG       D               
Sbjct: 89  LSLYNNSINSTLPLNIAAC---KSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFS 145

Query: 123 -----SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK 177
                SFG    L++L+L  N  +  I P+L  +++L  LNL YN    SR       L 
Sbjct: 146 GDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSRIPPEFGNLT 205

Query: 178 NLEALDLSSNYYI 190
           NLE + L+  + +
Sbjct: 206 NLEVMWLTECHLV 218

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH8|Y1634_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 47  SDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLD 106
           SD CD W G+ CS +   V+        K N S +S+  +G L   +        LQ L 
Sbjct: 54  SDPCD-WTGIYCSPSKDHVI--------KINISASSI--KGFLAPELG---QITYLQELI 99

Query: 107 LPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166
           L  N   G          G+L+ LK+L+LGNN     I   + +L+ +  +NL+ N + G
Sbjct: 100 LHGNILIGTIPKE----IGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTG 155

Query: 167 SRTKQGLAKLKNLEALDLSSNYYIHGSL 194
               + L  LK L  L +  N  + GSL
Sbjct: 156 KLPAE-LGNLKYLRELHIDRN-RLQGSL 181

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
297745031	869	unnamed protein product [Vitis vinifera]	0.904	0.207	0.445	9e-32
10177158	888	disease resistance protein-like [Arabido	0.899	0.201	0.430	1e-31
240256417	908	receptor like protein 56 [Arabidopsis th	0.899	0.197	0.430	2e-31
297821945	910	leucine-rich repeat family protein [Arab	0.904	0.197	0.407	2e-29
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.889	0.165	0.448	2e-29
240254535	935	receptor like protein 21 [Arabidopsis th	0.904	0.192	0.402	1e-28
4432858	910	putative disease resistance protein [Ara	0.904	0.197	0.402	1e-28
359483099	1231	PREDICTED: probable LRR receptor-like se	0.899	0.145	0.433	6e-28
359482735	1097	PREDICTED: receptor-like protein 12-like	0.879	0.159	0.414	1e-25
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.899	0.156	0.412	2e-25

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 13/193 (6%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HGYK CLE ER  LLE K F  S ++    D++LPSWV +++   SDCC  W  V C++
Sbjct: 19  IHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEE---SDCCY-WERVVCNS 72

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYW----EGVLVLNMSLFHPFEELQRLDLPMNWFTGIY 116
           TT  V QLSLN   +  + Y+ VY     +    LN+SLFHPFEEL  LDL  NWF    
Sbjct: 73  TTGTVTQLSLNNIRQIEF-YHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWFADSL 131

Query: 117 ENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176
           E++ ++    L++L+MLN+G N FN++I P +  LTSL  L LR   +EGS   +     
Sbjct: 132 EDQGFEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEGSYLDR--VPF 189

Query: 177 KNLEALDLSSNYY 189
            NLE LDLS+N +
Sbjct: 190 NNLEVLDLSNNRF 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 16/195 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  W  +KC+ 
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYEN-R 119
           T+RR+  LSL         Y S Y E + +LN+SL HPFEE++ LDL  +   G+ ++  
Sbjct: 63  TSRRLTGLSL---------YTSYYLE-ISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVE 112

Query: 120 AYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179
            Y S   LR L++LN  +N+FN++I P+LN  TSLTTL+LR N++ G    + L  L NL
Sbjct: 113 GYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNL 172

Query: 180 EALDLSSNYYIHGSL 194
           E LDLS N  I GS+
Sbjct: 173 ELLDLSGN-RIDGSM 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 16/195 (8%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  W  +KC+ 
Sbjct: 7   LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYEN-R 119
           T+RR+  LSL         Y S Y E + +LN+SL HPFEE++ LDL  +   G+ ++  
Sbjct: 63  TSRRLTGLSL---------YTSYYLE-ISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVE 112

Query: 120 AYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL 179
            Y S   LR L++LN  +N+FN++I P+LN  TSLTTL+LR N++ G    + L  L NL
Sbjct: 113 GYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNL 172

Query: 180 EALDLSSNYYIHGSL 194
           E LDLS N  I GS+
Sbjct: 173 ELLDLSGN-RIDGSM 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 19/199 (9%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HG KGC+  ER ALLE+K + +S S     D +LP+W  +     SDCC  W G+KC+ 
Sbjct: 7   LHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM---NWFTGIYE 117
           T+RRV+ LS+            +Y++    LN+SL HPFEE++ L+L     N F G ++
Sbjct: 63  TSRRVIGLSVG----------DMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFD 112

Query: 118 N-RAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176
           +   Y S   LR L++++L  N FN +I P+LN  TSLTT+ L YN ++G    +GL  L
Sbjct: 113 DVEGYRSLSRLRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGLKDL 172

Query: 177 KNLEALDLSSNYYIHGSLE 195
            NLE LDL +N  + GS++
Sbjct: 173 TNLELLDLRAN-KLKGSMQ 190

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 110/185 (59%), Gaps = 8/185 (4%)

Query: 3   GYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATT 62
           G KGC+E E+  LLE K+F    ++  + D +LPSW+   D   S+CC+ W  V C+ TT
Sbjct: 22  GCKGCIEEEKMGLLEFKAFLKLNNE--HADFLLPSWI---DNNTSECCN-WERVICNPTT 75

Query: 63  RRVMQLSLNYTTKFNYSYNSVYWEGVL--VLNMSLFHPFEELQRLDLPMNWFTGIYENRA 120
            RV +L  N  T+ +   N  Y+E V   +LN+SLF PFEEL  L+L  N F G  EN  
Sbjct: 76  GRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIENEG 135

Query: 121 YDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180
           + S   L++L++LNL +N FN  I+  L+ LTSL TL + YN IEG    Q  A L NLE
Sbjct: 136 FKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQDFASLNNLE 195

Query: 181 ALDLS 185
            LDLS
Sbjct: 196 ILDLS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 19/199 (9%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HG   C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W G+KC+ 
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM---NWFTGIYE 117
           T+ RV++LS+            +Y++    LN+SL HPFEE++ L+L     N F G ++
Sbjct: 63  TSGRVIELSVG----------DMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFD 112

Query: 118 N-RAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176
           +   Y S   LR LK+++L  N FN +  P+LN  TSLTTL L YN ++G    +GL  L
Sbjct: 113 DVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDL 172

Query: 177 KNLEALDLSSNYYIHGSLE 195
            NLE LDL +N  ++GS++
Sbjct: 173 TNLELLDLRAN-KLNGSMQ 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 117/199 (58%), Gaps = 19/199 (9%)

Query: 1   MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
           +HG   C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W G+KC+ 
Sbjct: 7   LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query: 61  TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM---NWFTGIYE 117
           T+ RV++LS+            +Y++    LN+SL HPFEE++ L+L     N F G ++
Sbjct: 63  TSGRVIELSVG----------DMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFD 112

Query: 118 N-RAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176
           +   Y S   LR LK+++L  N FN +  P+LN  TSLTTL L YN ++G    +GL  L
Sbjct: 113 DVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDL 172

Query: 177 KNLEALDLSSNYYIHGSLE 195
            NLE LDL +N  ++GS++
Sbjct: 173 TNLELLDLRAN-KLNGSMQ 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 114/189 (60%), Gaps = 10/189 (5%)

Query: 3   GYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATT 62
           G KGC+E E+  LLE K+F + ++D G+ D +LPSW+   D   SDCC+ W  V C+ TT
Sbjct: 22  GCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWI---DNNISDCCN-WERVICNPTT 75

Query: 63  RRVMQLSLNYTTKFN--YSYNSVYWEGVL--VLNMSLFHPFEELQRLDLPMNWFTGIYEN 118
            RV +LSLN   +       N  Y+E V   +LN+SLF PFEEL  L+L  N F G  EN
Sbjct: 76  GRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIEN 135

Query: 119 RAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN 178
             +    SL++L++L++  N+F+ + L  L  +TSL TL +R   ++GS   Q LA  +N
Sbjct: 136 EGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPIQELASSRN 195

Query: 179 LEALDLSSN 187
           LE LDLS N
Sbjct: 196 LEVLDLSYN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/193 (41%), Positives = 112/193 (58%), Gaps = 18/193 (9%)

Query: 5   KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRR 64
           KGC+E E+  LLE K+F + ++D  + D +LPSW+   D   S+CC+ W  V C+ TT +
Sbjct: 24  KGCIEEEKMGLLEFKAF-LKLND-EHADFLLPSWL---DNNTSECCN-WERVICNPTTGQ 77

Query: 65  VMQLSLNYTTK--------FNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIY 116
           V +L LN   +        + Y  N+ +W    +LN+SLF PFEEL  L+L  N F G  
Sbjct: 78  VKKLFLNDIRQQQNFLEDNWYYYENAKFW----LLNVSLFLPFEELHHLNLSANSFDGFI 133

Query: 117 ENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL 176
           EN  + S   L++L++LNLG N FN  I+  L+ LTSL TL +  N IEG    QG  +L
Sbjct: 134 ENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIEGLFPSQGFCQL 193

Query: 177 KNLEALDLSSNYY 189
             L+ LDLS N +
Sbjct: 194 NKLQELDLSYNLF 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 10/189 (5%)

Query: 3   GYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATT 62
           G KGC+E E+  LLE K+F    ++  + D +LPSW+   D   S+CC+ W  V C+ TT
Sbjct: 22  GCKGCIEEEKMGLLEFKAFLKLNNE--HADFLLPSWI---DNNTSECCN-WERVICNPTT 75

Query: 63  RRVMQLSLNYTTKFN--YSYNSVYWEGVL--VLNMSLFHPFEELQRLDLPMNWFTGIYEN 118
            RV +L  N  T+       N  Y+E V   +LN+SLF PFEEL  L+L  N F G  EN
Sbjct: 76  GRVKKLFFNDITRQQNFLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDGFIEN 135

Query: 119 RAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN 178
             ++   SL++L++L++  N+F+ + L  L T+TSL TL +    + GS + + LA L+N
Sbjct: 136 EGFEGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICRMGLNGSFSIRELASLRN 195

Query: 179 LEALDLSSN 187
           LE LDLS N
Sbjct: 196 LEVLDLSYN 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.899	0.197	0.384	6.2e-28
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.894	0.182	0.376	5.9e-26
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.904	0.192	0.356	2.4e-25
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.884	0.182	0.333	4.5e-23
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.859	0.157	0.308	3.4e-15
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.683	0.152	0.355	1.3e-13
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.522	0.104	0.321	1.1e-09
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.864	0.196	0.283	8.3e-09
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.567	0.157	0.335	9.4e-07
TAIR|locus:2182260	371	AT5G12940 [Arabidopsis thalian	0.266	0.142	0.359	1.6e-06

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 6.2e-28, P = 6.2e-28
 Identities = 75/195 (38%), Positives = 108/195 (55%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
             +HG+  C+E ER ALLE+K F +S  +    D +LP+W  +     SDCC  W  +KC+ 
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK---SDCCQ-WENIKCNR 62

Query:    61 TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYEN-R 119
             T+RR+  LSL         Y S Y E + +LN+SL HPFEE++ LDL  +   G+ ++  
Sbjct:    63 TSRRLTGLSL---------YTSYYLE-ISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVE 112

Query:   120 AYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKLKNL 179
              Y S   LR L++LN  +N+FN++I P+            R N++ G    + L  L NL
Sbjct:   113 GYKSLRRLRNLQILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIPLKELKNLTNL 172

Query:   180 EALDLSSNYYIHGSL 194
             E LDLS N  I GS+
Sbjct:   173 ELLDLSGNR-IDGSM 186

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 5.9e-26, P = 5.9e-26
 Identities = 75/199 (37%), Positives = 114/199 (57%)

Query:     1 MHGYKGCLETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCS 59
             + GYK C+E ER ALLE+K + IS  +D G D  +LP+W  +     S+CC  W G+KC+
Sbjct:    21 LRGYKCCIEKERKALLELKKYMISKTADWGLDS-VLPTWTNDTK---SNCCR-WEGLKCN 75

Query:    60 ATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLP---MNWFTGIY 116
              T+ R+++LS+  T   N+  +S+       LN+SL HPFEEL+ L+L     N F G++
Sbjct:    76 QTSGRIIELSIGQT---NFKESSL-------LNLSLLHPFEELRSLNLSGEIYNEFNGLF 125

Query:   117 EN-RAYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAK 175
             ++   Y+S   LR L++L+L +N FN++I P+            + N I G    + L  
Sbjct:   126 DDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLNAATSLTTLFIQSNYIGGPLPIKELKN 185

Query:   176 LKNLEALDLSSNYYIHGSL 194
             L  LE LDLS + Y +GS+
Sbjct:   186 LTKLELLDLSRSGY-NGSI 203

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 71/199 (35%), Positives = 108/199 (54%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
             +HG   C+E ER ALLE+K + +S S     D +LP+W  +     SDCC  W G+KC+ 
Sbjct:     7 LHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTNDTK---SDCCQ-WDGIKCNR 62

Query:    61 TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM---NWFTGIYE 117
             T+ RV++LS+            +Y++    LN+SL HPFEE++ L+L     N F G ++
Sbjct:    63 TSGRVIELSVG----------DMYFKESSPLNLSLLHPFEEVRSLNLSTEGYNEFNGFFD 112

Query:   118 N-RAYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKL 176
             +   Y S   LR LK+++L  N FN +  P+             YN ++G    +GL  L
Sbjct:   113 DVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGLKDL 172

Query:   177 KNLEALDLSSNYYIHGSLE 195
              NLE LDL +N  ++GS++
Sbjct:   173 TNLELLDLRANK-LNGSMQ 190

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.5e-23, P = 4.5e-23
 Identities = 65/195 (33%), Positives = 109/195 (55%)

Query:     1 MHGYKGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA 60
             +HGYK C++ E+ AL E++   IS ++    + +LP+W  +     SDCC  W GV C+ 
Sbjct:    21 LHGYKSCIDEEKIALFELRKHMISRTE---SESVLPTWTNDTT---SDCCR-WKGVACNR 73

Query:    61 TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYEN-R 119
              + RV ++S       +   NS+       LN+SL HPFE+++ L+L  +  +G++++  
Sbjct:    74 VSGRVTEISFG---GLSLKDNSL-------LNLSLLHPFEDVRSLNLSSSRCSGLFDDVE 123

Query:   120 AYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKLKNL 179
              Y S   LR+L++L+L +N FN++I  +            R N+++GS   + L  L NL
Sbjct:   124 GYKSLRKLRKLEILDLASNKFNNSIFHFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNL 183

Query:   180 EALDLSSNYYIHGSL 194
             E LDLS N + +GS+
Sbjct:   184 ELLDLSRNRF-NGSI 197

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 58/188 (30%), Positives = 93/188 (49%)

Query:    15 LLEIKSFFISVSDIGYDDK----ILPSWVGEDDGMPSDCCDDWVGVKCS-ATTRRVMQLS 69
             LL++KS+  ++ D   +++    IL SW   +     DCC  W  VKCS A    V+ LS
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE----GDCCR-WERVKCSDAINGHVIGLS 57

Query:    70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYEN-RAYDSFGSLR 128
             L+      +   +        LN+SL H F +LQ L+L  NWFT + ++   + SFG+L 
Sbjct:    58 LDRLVPVAFESQT------RSLNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTLD 111

Query:   129 QLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
             +L  L+  +N F+++I+P+              N +EG    Q L+ + NL  L+L  N 
Sbjct:   112 KLTTLDFSHNMFDNSIVPFLNAATSIRSLHLESNYMEGVFPPQELSNMTNLRVLNLKDNS 171

Query:   189 YIHGSLEG 196
             +   S +G
Sbjct:   172 FSFLSSQG 179

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 53/149 (35%), Positives = 75/149 (50%)

Query:    45 MPSD--CCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLV-LNMSLFHPFEE 101
             M SD  CC  W  +KC  T++RV+ +SL        S  S+     L  LN++ F+PFEE
Sbjct:     1 MSSDRSCCH-WRRIKCDITSKRVIGISL--------SLESIRPPDPLPQLNLTFFYPFEE 51

Query:   102 LQRLDLPMNWFTGIYENR-AYDSFGSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXR 160
             LQ L+L   +F G ++ R      GSLR L+ L+LG N ++ ++LPY             
Sbjct:    52 LQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAVSLKTLILH 111

Query:   161 YNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
              N  +G    Q L  L +LE LDL  N +
Sbjct:   112 DNLFKGGFPVQELINLTSLEVLDLKFNKF 140

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 36/112 (32%), Positives = 61/112 (54%)

Query:    90 VLNMSLFHPFEELQRLDLPMN------WFTGIYEN-RAYDSFGSLRQLKMLNLGNNDFND 142
             +LN+SL HPFE+++ LDL  +       F+G++++   Y S   LR L++L+L ++ FN+
Sbjct:    27 LLNLSLLHPFEDVRSLDLSSSRSCEDCGFSGLFDDVEGYKSLSRLRNLEILDLSSHRFNN 86

Query:   143 NILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
             +I P+             YN++      +    L NLE LDL  N + +GS+
Sbjct:    87 SIFPFLNAATSLTTLFLTYNNMHSPFLVKEFKDLTNLEHLDLRGNRF-NGSI 137

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 55/194 (28%), Positives = 84/194 (43%)

Query:     7 CLETERTALLEIKSFF-ISVSDIGYDDKI-LPSWVGEDDGMPSDCCDDWVGVKCSATTRR 64
             C   +R ALLE K+ F I     G    +   SW   ++G  SDCC  W G+ C A T  
Sbjct:    30 CHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSW---ENG--SDCCH-WDGITCDAKTGE 83

Query:    65 VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF 124
             V+++ L  +    + +++         N+S+   F  L  LDL  N  +G    +   S 
Sbjct:    84 VIEIDLMCSCLHGWFHSNS--------NLSMLQNFHFLTTLDLSYNHLSG----QISSSI 131

Query:   125 GSLRQLKMLNLGNNDFNDNILPYXXXXXXXXXXXXRYNSIEGSRTKQGLAKLKNLEALDL 184
             G+L  L  L+L  N+F+  I P              Y++  G      L  L  L  LDL
Sbjct:   132 GNLSHLTTLDLSGNNFSGWI-PSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDL 190

Query:   185 SSNYYIHGSLEGNF 198
             S+N ++ G +  +F
Sbjct:   191 STNNFV-GEIPSSF 203

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
 Identities = 44/131 (33%), Positives = 65/131 (49%)

Query:     7 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVM 66
             C + ++ ALLE K+ F  V +    + I+     E     +DCC  W G+ C   T +V+
Sbjct:    29 CRQDQKNALLEFKNEFY-VHEFN-SNGIVGVKKTEKWRNNTDCCS-WDGISCDPKTGKVV 85

Query:    67 QLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS 126
             +L L          NS +  G L  + SLF   + L  LDL  N F+GI      DS GS
Sbjct:    86 ELDL---------MNS-FLNGPLRYDSSLFR-LQHLHNLDLGSNNFSGILP----DSIGS 130

Query:   127 LRQLKMLNLGN 137
             L+ L++L+LG+
Sbjct:   131 LKYLRVLSLGD 141

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 23/64 (35%), Positives = 33/64 (51%)

Query:     7 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVM 66
             CL ++R ALLE ++  ++   IG    +  +W G       DCC  W GV C   TRRV 
Sbjct:    27 CLPSDRAALLEFRAK-LNEPYIG----VFNTWKG------LDCCKGWYGVSCDPNTRRVA 75

Query:    67 QLSL 70
              ++L
Sbjct:    76 GITL 79

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	5e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEA 181
           +    LR L+ +NL  N    NI P L ++TSL  L+L YNS  GS   + L +L +L  
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRI 494

Query: 182 LDLSSNY 188
           L+L+ N 
Sbjct: 495 LNLNGNS 501

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ LDL  N  +G       +  GS   LK+L+LG N     I   L  LTSL  L L  
Sbjct: 142 LETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N + G   ++ L ++K+L+ + L  N
Sbjct: 198 NQLVGQIPRE-LGQMKSLKWIYLGYN 222

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  LDL  N  TG        S G+L+ L+ L L  N  +  I P + +L  L +L+L  
Sbjct: 238 LNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           NS+ G    + + +L+NLE L L SN
Sbjct: 294 NSLSG-EIPELVIQLQNLEILHLFSN 318

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL----N 149
            L      L++L L  N   G        +  + R LK LNL NN   D  +  L     
Sbjct: 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 150 TLTSLTTLNLRYNSIE---GSRTKQGLAKLKNLEALDLSSN 187
              +L  L+L  N +     S   + LA LK+LE L+L  N
Sbjct: 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNL 159
           + L+ LDL  N F+G    +     GSL +L  L L  N  +  I   L++   L +L+L
Sbjct: 475 KRLENLDLSRNQFSGAVPRK----LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +N + G +     +++  L  LDLS N
Sbjct: 531 SHNQLSG-QIPASFSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE 165
            L+ L+L NN   D  LP L+ L +L TL+L  N I 
Sbjct: 2   NLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 10/52 (19%)

Query: 8  LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCS 59
          L  +R ALL  KS              L SW        SD C  W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPS-----GALSSWNPSS----SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              LQ ++L  N   G        S GS+  L++L+L  N FN +I   L  LTSL  LN
Sbjct: 441 LRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 159 LRYNSIEG 166
           L  NS+ G
Sbjct: 497 LNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 129 QLKMLNLGNNDFNDNILP-YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            LK L+L NN     I       L +L  L+L  N++    + +  + L +L +LDLS N
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L L  N   G    +     G ++ LK + LG N+ +  I   +  LTSL  L+L Y
Sbjct: 190 LEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N++ G      L  LKNL+ L L  N
Sbjct: 246 NNLTGP-IPSSLGNLKNLQYLFLYQN 270

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 19/150 (12%)

Query: 47  SDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLD 106
              C+       +    + + L+ N           +   G+  L   L      L+ LD
Sbjct: 151 GASCEALAKALRANRDLKELNLANN----------GIGDAGIRALAEGLKA-NCNLEVLD 199

Query: 107 LPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-----NTLTSLTTLNLRY 161
           L  N  T    +   ++  SL+ L++LNLG+N+  D     L     +   SL TL+L  
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 162 NSIE--GSRT-KQGLAKLKNLEALDLSSNY 188
           N I   G++   + LA+ ++L  LDL  N 
Sbjct: 260 NDITDDGAKDLAEVLAEKESLLELDLRGNK 289

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNL 159
           L+ LDL  N  T I +     +F  L  LK+L+L  N  N   +     + L SL +L+L
Sbjct: 2   LKSLDLSNNRLTVIPD----GAFKGLPNLKVLDLSGN--NLTSISPEAFSGLPSLRSLDL 55

Query: 160 RYNSI 164
             N++
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                EL +L L  N  +G       D   S ++L  L+L +N  +  I    + +  L+
Sbjct: 495 LGSLSELMQLKLSENKLSGEIP----DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
            L+L  N + G   K  L  +++L  +++S N+  HGSL
Sbjct: 551 QLDLSQNQLSGEIPKN-LGNVESLVQVNISHNHL-HGSL 587

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.38
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
PLN03150	623	hypothetical protein; Provisional	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.22
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.11
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.1
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.05
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.79
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.76
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.36
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.24
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.2
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.2
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.37
smart00370	26	LRR Leucine-rich repeats, outliers.	96.37
PRK15386	426	type III secretion protein GogB; Provisional	96.31
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.04
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.68
PRK15386	426	type III secretion protein GogB; Provisional	95.56
smart00370	26	LRR Leucine-rich repeats, outliers.	94.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.41
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.21
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	87.95
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.95
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.32
KOG4308	478	consensus LRR-containing protein [Function unknown	83.2

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=3.1e-21  Score=177.78  Aligned_cols=166  Identities=30%  Similarity=0.440  Sum_probs=116.3

Q ss_pred             cHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCC---------------
Q 045715            8 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNY---------------   72 (199)
Q Consensus         8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~---------------   72 (199)
                      .+.|+.||++||+++.+|.      ..+.+|..     ..+|| .|.||+|++ .++|+.+++++               
T Consensus        27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~-----~~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~   93 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL------KYLSNWNS-----SADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLP   93 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc------ccCCCCCC-----CCCCC-cCcceecCC-CCcEEEEEecCCCccccCChHHhCCC
Confidence            6688999999999997665      46789976     57899 999999985 46888887653               


Q ss_pred             -ccceeccCCCccccccccccccccCCCCCCcEEECC----------------------CCccCccccccchhhccCCCC
Q 045715           73 -TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLP----------------------MNWFTGIYENRAYDSFGSLRQ  129 (199)
Q Consensus        73 -~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls----------------------~N~l~~~~p~~~~~~~~~l~~  129 (199)
                       ++.|+|++|.+...    ++...+..+++|++|+|+                      +|.+++.+|.    .++.+++
T Consensus        94 ~L~~L~Ls~n~~~~~----ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~  165 (968)
T PLN00113         94 YIQTINLSNNQLSGP----IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN----DIGSFSS  165 (968)
T ss_pred             CCCEEECCCCccCCc----CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh----HHhcCCC
Confidence             47889999887531    223333344445555544                      4444444554    6667777


Q ss_pred             CCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          130 LKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       130 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      |++|++++|.+.+.+|..++++++|++|+|++|.+.+.+|. .++++++|++|++++|+++ +.+|.
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~-~~~p~  230 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLS-GEIPY  230 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccC-CcCCh
Confidence            77777777777767777777777777777777777765665 6777777777777777776 34454

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=4.5e-17  Score=143.71  Aligned_cols=162  Identities=25%  Similarity=0.320  Sum_probs=123.5

Q ss_pred             CCCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCCccceeccCCCcc
Q 045715            5 KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVY   84 (199)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~~L~ls~N~~~   84 (199)
                      ....++|..||+.+|+.+..+.        ..+|.. +.|. ...| .|.||.|.......    ...++.|+|++|.+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g-~~C~-p~~~-~w~Gv~C~~~~~~~----~~~v~~L~L~~n~L~  431 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNG-DPCV-PQQH-PWSGADCQFDSTKG----KWFIDGLGLDNQGLR  431 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--------cCCCCC-CCCC-Cccc-ccccceeeccCCCC----ceEEEEEECCCCCcc
Confidence            4567789999999999885443        247875 1000 0113 69999995321110    001234555666665


Q ss_pred             ccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcC
Q 045715           85 WEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSI  164 (199)
Q Consensus        85 ~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  164 (199)
                      .     ..+..+..+++|+.|+|++|.+++.+|.    .+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++
T Consensus       432 g-----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        432 G-----FIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             c-----cCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            4     3366788999999999999999999998    999999999999999999999999999999999999999999


Q ss_pred             CCccchhhccC-CCCCCEEeCcCCccCC
Q 045715          165 EGSRTKQGLAK-LKNLEALDLSSNYYIH  191 (199)
Q Consensus       165 ~~~ip~~~~~~-l~~L~~L~Ls~N~l~~  191 (199)
                      ++.+|. .+.. ..++..+++.+|....
T Consensus       503 ~g~iP~-~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        503 SGRVPA-ALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             cccCCh-HHhhccccCceEEecCCcccc
Confidence            998997 5665 3577889999998653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.53  E-value=2e-14  Score=132.83  Aligned_cols=113  Identities=24%  Similarity=0.341  Sum_probs=96.2

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      ++.|++++|.+..     ..+..+..+++|+.|++++|.+.+.+|.    .+..+++|++|++++|.+++.+|..+..++
T Consensus       477 L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        477 LENLDLSRNQFSG-----AVPRKLGSLSELMQLKLSENKLSGEIPD----ELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             ceEEECcCCccCC-----ccChhhhhhhccCEEECcCCcceeeCCh----HHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            4566666666654     3356677888999999999999988888    899999999999999999999999999999


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      +|+.|+|++|++++.+|. .+.++++|++|++++|+++ +.+|.
T Consensus       548 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~l~ls~N~l~-~~~p~  589 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPK-NLGNVESLVQVNISHNHLH-GSLPS  589 (968)
T ss_pred             cCCEEECCCCcccccCCh-hHhcCcccCEEeccCCcce-eeCCC
Confidence            999999999999988887 7889999999999999998 55664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.38  E-value=4.4e-14  Score=103.76  Aligned_cols=114  Identities=24%  Similarity=0.338  Sum_probs=86.1

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      +++..+.|.||+|.+..     + +..+..+.+|+.|++++|+++. +|.    .++.++.|+.|+++-|++. ..|..|
T Consensus        31 ~~s~ITrLtLSHNKl~~-----v-ppnia~l~nlevln~~nnqie~-lp~----~issl~klr~lnvgmnrl~-~lprgf   98 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-----V-PPNIAELKNLEVLNLSNNQIEE-LPT----SISSLPKLRILNVGMNRLN-ILPRGF   98 (264)
T ss_pred             chhhhhhhhcccCceee-----c-CCcHHHhhhhhhhhcccchhhh-cCh----hhhhchhhhheecchhhhh-cCcccc
Confidence            45566777788888775     3 3446778888888888888887 666    7888888888888888887 678888


Q ss_pred             cCCCCCCEEecCCCcCCCc-cchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          149 NTLTSLTTLNLRYNSIEGS-RTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      +.+|.|+.|||.+|++... +| +.|..+..|+.|+|++|.+.  .+|.+
T Consensus        99 gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dndfe--~lp~d  145 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDNDFE--ILPPD  145 (264)
T ss_pred             CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCCcc--cCChh
Confidence            8888888888888887753 44 46777888888888888887  55654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.38  E-value=3.5e-14  Score=120.59  Aligned_cols=94  Identities=30%  Similarity=0.388  Sum_probs=68.6

Q ss_pred             cccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh---hhcCCCCCCEEecCCCcCCCcc
Q 045715           92 NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP---YLNTLTSLTTLNLRYNSIEGSR  168 (199)
Q Consensus        92 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~i  168 (199)
                      ++..|..+.+|+.|+|+.|+++.+...    .|..+++|++|||.+|.+++.+.+   .|.+|++|+.|+|.+|++.. |
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~----af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I  407 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEG----AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-I  407 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhh----HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-c
Confidence            333444444444444444444443333    677788888888888888765543   57789999999999999988 8


Q ss_pred             chhhccCCCCCCEEeCcCCccC
Q 045715          169 TKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       169 p~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |...|.++..|++|||.+|.|.
T Consensus       408 ~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             chhhhccCcccceecCCCCcce
Confidence            8888999999999999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=1.2e-14  Score=106.75  Aligned_cols=112  Identities=29%  Similarity=0.353  Sum_probs=87.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC-CCChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN-DNILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~  148 (199)
                      +.+++.|++++|++..     + |..++.+++|+.|++..|++.- .|.    .|+.++.|+.|||.+|.+. ..+|..|
T Consensus        55 l~nlevln~~nnqie~-----l-p~~issl~klr~lnvgmnrl~~-lpr----gfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEE-----L-PTSISSLPKLRILNVGMNRLNI-LPR----GFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             hhhhhhhhcccchhhh-----c-Chhhhhchhhhheecchhhhhc-Ccc----ccCCCchhhhhhccccccccccCCcch
Confidence            3455778888888864     3 4556788888888888888876 677    8888888888888888885 4567777


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      ..+..|+.|+|+.|.+.- +|+ .++++++|+.|.+..|.+-  ++|.
T Consensus       124 f~m~tlralyl~dndfe~-lp~-dvg~lt~lqil~lrdndll--~lpk  167 (264)
T KOG0617|consen  124 FYMTTLRALYLGDNDFEI-LPP-DVGKLTNLQILSLRDNDLL--SLPK  167 (264)
T ss_pred             hHHHHHHHHHhcCCCccc-CCh-hhhhhcceeEEeeccCchh--hCcH
Confidence            778888888888888877 776 6888888888888888876  5554

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=1.3e-12  Score=115.63  Aligned_cols=91  Identities=34%  Similarity=0.522  Sum_probs=85.3

Q ss_pred             CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCC
Q 045715          101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE  180 (199)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  180 (199)
                      .++.|+|++|.+++.+|.    .+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|. .++++++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~----~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPN----DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCH----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCC
Confidence            378899999999999998    999999999999999999999999999999999999999999998887 899999999


Q ss_pred             EEeCcCCccCCCCcCCC
Q 045715          181 ALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       181 ~L~Ls~N~l~~~~ip~~  197 (199)
                      .|+|++|+++ +.+|..
T Consensus       494 ~L~Ls~N~l~-g~iP~~  509 (623)
T PLN03150        494 ILNLNGNSLS-GRVPAA  509 (623)
T ss_pred             EEECcCCccc-ccCChH
Confidence            9999999998 667754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=1.4e-12  Score=97.40  Aligned_cols=106  Identities=28%  Similarity=0.322  Sum_probs=41.2

Q ss_pred             CCccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh-
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-  148 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-  148 (199)
                      ...+.|+|++|.|..       .+.+. .+.+|+.|++++|.++. ++     .+..++.|+.|++++|+++. +...+ 
T Consensus        19 ~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~~-i~~~l~   84 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRISS-ISEGLD   84 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS---S--CHHHH
T ss_pred             ccccccccccccccc-------ccchhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCCc-cccchH
Confidence            345778888888876       22343 57889999999999987 43     57788999999999999984 43334 


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|+.|+|++|+|...-.-..+..+++|+.|+|.+|+++
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            468899999999999886322235778899999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.25  E-value=7.3e-12  Score=106.75  Aligned_cols=126  Identities=23%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             CCCceEecCCCCCeEEE--------ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhh
Q 045715           52 DWVGVKCSATTRRVMQL--------SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDS  123 (199)
Q Consensus        52 ~w~gv~C~~~~~~v~~l--------~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  123 (199)
                      .-.-..|+.  .++..+        -.+..++|++++|.++-     +....|.++++|+.+++.+|.++. +|.    .
T Consensus        53 ~~~lldcs~--~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~-----id~~~f~nl~nLq~v~l~~N~Lt~-IP~----f  120 (873)
T KOG4194|consen   53 NTRLLDCSD--RELEAIDKSRLKGFLPSQTQTLDLSNNKLSH-----IDFEFFYNLPNLQEVNLNKNELTR-IPR----F  120 (873)
T ss_pred             CceeeecCc--cccccccccccCCcCccceeeeecccccccc-----CcHHHHhcCCcceeeeeccchhhh-ccc----c
Confidence            555566764  233333        23344789999999987     556677788888888888888876 564    2


Q ss_pred             ccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          124 FGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       124 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .....+|+.|+|.+|.++..-.+.+..++.|++||||.|.|+. +|...|..-.++++|+|++|+|+
T Consensus       121 ~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  121 GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             cccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeecccccc
Confidence            2222335555555555554444445555555555555555544 44333433344444444444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.22  E-value=8.2e-12  Score=102.29  Aligned_cols=114  Identities=27%  Similarity=0.337  Sum_probs=94.1

Q ss_pred             CeEEEecCCc----------------cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715           64 RVMQLSLNYT----------------TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL  127 (199)
Q Consensus        64 ~v~~l~l~~~----------------~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l  127 (199)
                      -|+.+++++.                +.+.+++|.+..      .+..+..+++|..|+|++|.+.. +|.    +++.+
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf------v~~~l~~l~kLt~L~L~NN~Ln~-LP~----e~~~l  457 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF------VPLELSQLQKLTFLDLSNNLLND-LPE----EMGSL  457 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc------chHHHHhhhcceeeecccchhhh-cch----hhhhh
Confidence            3777777765                456777777765      25567889999999999999987 788    88899


Q ss_pred             CCCCEEEcCCCCCCC-----------------------CChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeC
Q 045715          128 RQLKMLNLGNNDFND-----------------------NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL  184 (199)
Q Consensus       128 ~~L~~L~Ls~N~l~~-----------------------~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L  184 (199)
                      ..|+.|++++|+|.-                       ..|+.+.+|.+|.+|||.+|.+.. +|+ .++++++|++|++
T Consensus       458 v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp-~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  458 VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPP-ILGNMTNLRHLEL  535 (565)
T ss_pred             hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CCh-hhccccceeEEEe
Confidence            999999999988752                       122336778999999999999998 998 8999999999999


Q ss_pred             cCCccC
Q 045715          185 SSNYYI  190 (199)
Q Consensus       185 s~N~l~  190 (199)
                      ++|+|.
T Consensus       536 ~gNpfr  541 (565)
T KOG0472|consen  536 DGNPFR  541 (565)
T ss_pred             cCCccC
Confidence            999997

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.18  E-value=1.3e-11  Score=76.37  Aligned_cols=60  Identities=32%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCcc
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l  189 (199)
                      +|++|++++|+++...+..|..+++|++|++++|+++. ++++.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence            45666666666664444556666666666666666665 5555666666666666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.13  E-value=5.5e-12  Score=102.96  Aligned_cols=132  Identities=26%  Similarity=0.246  Sum_probs=106.5

Q ss_pred             ceEecCCCCCeEEEecCC-ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEE
Q 045715           55 GVKCSATTRRVMQLSLNY-TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKML  133 (199)
Q Consensus        55 gv~C~~~~~~v~~l~l~~-~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L  133 (199)
                      -|+|++....-+..+|+. .+.+.|..|.|+.     +++..|..+++|+.||||+|.|+.+.|+    +|.++.+|..|
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~-----iP~~aF~~l~~LRrLdLS~N~Is~I~p~----AF~GL~~l~~L  120 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISS-----IPPGAFKTLHRLRRLDLSKNNISFIAPD----AFKGLASLLSL  120 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCccc-----CChhhccchhhhceecccccchhhcChH----hhhhhHhhhHH
Confidence            378876554444455653 4678888999987     8899999999999999999999999998    99999999887


Q ss_pred             EcCC-CCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          134 NLGN-NDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       134 ~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      -+-+ |+|+......|+++.+|+.|.+.-|++.- ++.+.|..+++|..|.+-+|.+.  .+++..
T Consensus       121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q--~i~~~t  183 (498)
T KOG4237|consen  121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQ--SICKGT  183 (498)
T ss_pred             HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhh--hhcccc
Confidence            6655 99996666678888888888888888887 66668888888888888888887  565543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.11  E-value=4.1e-11  Score=74.15  Aligned_cols=61  Identities=33%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSI  164 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  164 (199)
                      ++|++|++++|+++...+.    .|..+++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~----~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD----SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTT----TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHH----HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777765555    677777777777777777765566777777777777777764

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.10  E-value=1.6e-09  Score=97.36  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=41.8

Q ss_pred             CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCC
Q 045715          101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE  180 (199)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  180 (199)
                      +|+.|++++|.++. +|.    .+.  .+|+.|+|++|+++ .+|..+.  .+|+.|++++|+++. +|. .+.  ++|+
T Consensus       221 nL~~L~Ls~N~Lts-LP~----~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~-~l~--~sL~  286 (754)
T PRK15370        221 NIKTLYANSNQLTS-IPA----TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPE-NLP--EELR  286 (754)
T ss_pred             CCCEEECCCCcccc-CCh----hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccc-ccC--CCCc
Confidence            45555555555554 333    221  24555555555555 3444432  356667777776665 554 332  4677


Q ss_pred             EEeCcCCccC
Q 045715          181 ALDLSSNYYI  190 (199)
Q Consensus       181 ~L~Ls~N~l~  190 (199)
                      .|++++|+|+
T Consensus       287 ~L~Ls~N~Lt  296 (754)
T PRK15370        287 YLSVYDNSIR  296 (754)
T ss_pred             EEECCCCccc
Confidence            7777777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.08  E-value=1.7e-11  Score=105.54  Aligned_cols=105  Identities=34%  Similarity=0.410  Sum_probs=62.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC------------
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN------------  141 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~------------  141 (199)
                      .+|+||+|+|..     ++...|.+++-|-+||||+|++.. +|+    ....+..|+.|.|++|.+.            
T Consensus       129 iVLNLS~N~Iet-----IPn~lfinLtDLLfLDLS~NrLe~-LPP----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts  198 (1255)
T KOG0444|consen  129 IVLNLSYNNIET-----IPNSLFINLTDLLFLDLSNNRLEM-LPP----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS  198 (1255)
T ss_pred             EEEEcccCcccc-----CCchHHHhhHhHhhhccccchhhh-cCH----HHHHHhhhhhhhcCCChhhHHHHhcCccchh
Confidence            467888888876     666777788888888888888877 444    3333444444444444331            


Q ss_pred             -------------CCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          142 -------------DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       142 -------------~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                                   ..+|.++..+.+|..++||.|.+.. +|. .+.++++|+.|+||+|+|+
T Consensus       199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPe-cly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPE-CLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chH-HHhhhhhhheeccCcCcee
Confidence                         1234444445555555555555554 554 5555666666666666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.7e-10  Score=86.24  Aligned_cols=102  Identities=27%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCC-Chhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDN-ILPY  147 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~-~p~~  147 (199)
                      +..++.|++++|.+..       .+.+..++.|+.|++++|+++.. +.    .+ ..+++|++|++++|++... .-..
T Consensus        41 l~~L~~L~Ls~N~I~~-------l~~l~~L~~L~~L~L~~N~I~~i-~~----~l~~~lp~L~~L~L~~N~I~~l~~l~~  108 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK-------LEGLPGLPRLKTLDLSNNRISSI-SE----GLDKNLPNLQELYLSNNKISDLNELEP  108 (175)
T ss_dssp             -TT--EEE-TTS--S---------TT----TT--EEE--SS---S--CH----HHHHH-TT--EEE-TTS---SCCCCGG
T ss_pred             hcCCCEEECCCCCCcc-------ccCccChhhhhhcccCCCCCCcc-cc----chHHhCCcCCEEECcCCcCCChHHhHH
Confidence            5677899999999986       34577899999999999999984 33    34 4689999999999999642 2356


Q ss_pred             hcCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeC
Q 045715          148 LNTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDL  184 (199)
Q Consensus       148 ~~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~L  184 (199)
                      +..+++|+.|+|.+|+++. .+.   ..+..+|+|+.||-
T Consensus       109 L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             HHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence            7889999999999999986 332   13678999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.05  E-value=3.5e-11  Score=103.66  Aligned_cols=110  Identities=23%  Similarity=0.217  Sum_probs=82.7

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      |+.++.+.+..|++...|+    |..+..+..|+.||||.|++.. .|.    .+..-+++-+|+||+|+|..+.-+.|.
T Consensus        77 Lp~LRsv~~R~N~LKnsGi----P~diF~l~dLt~lDLShNqL~E-vP~----~LE~AKn~iVLNLS~N~IetIPn~lfi  147 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGI----PTDIFRLKDLTILDLSHNQLRE-VPT----NLEYAKNSIVLNLSYNNIETIPNSLFI  147 (1255)
T ss_pred             chhhHHHhhhccccccCCC----Cchhcccccceeeecchhhhhh-cch----hhhhhcCcEEEEcccCccccCCchHHH
Confidence            4555677777777777664    4445568888888888888887 676    777778888888888888743334466


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++.|-.|+||+|++.. +|+ .+..+..|++|+|++|.+.
T Consensus       148 nLtDLLfLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hhHhHhhhccccchhhh-cCH-HHHHHhhhhhhhcCCChhh
Confidence            88888888888888877 777 5777888888888888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=9.7e-11  Score=104.18  Aligned_cols=90  Identities=28%  Similarity=0.382  Sum_probs=41.0

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +.++++|+.|+|++|++.. +|.   ..+.++..|++|+||+|+++ .+|..+..++.|++|...+|.+.. +|  .+..
T Consensus       379 l~~~~hLKVLhLsyNrL~~-fpa---s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP--e~~~  450 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNS-FPA---SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP--ELAQ  450 (1081)
T ss_pred             hccccceeeeeeccccccc-CCH---HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch--hhhh
Confidence            3444445555555554444 222   13444444455555555554 344444444444444444444443 34  2444


Q ss_pred             CCCCCEEeCcCCccCCCC
Q 045715          176 LKNLEALDLSSNYYIHGS  193 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~~~~  193 (199)
                      ++.|+.+|+|.|+|+...
T Consensus       451 l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             cCcceEEecccchhhhhh
Confidence            444444444444444333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=6.1e-11  Score=105.41  Aligned_cols=106  Identities=26%  Similarity=0.314  Sum_probs=90.1

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ..+++.|+|++|+++.     ++...+.++..|+.|+||+|+++. +|.    .+..+..|++|....|++. ..| .+.
T Consensus       382 ~~hLKVLhLsyNrL~~-----fpas~~~kle~LeeL~LSGNkL~~-Lp~----tva~~~~L~tL~ahsN~l~-~fP-e~~  449 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNS-----FPASKLRKLEELEELNLSGNKLTT-LPD----TVANLGRLHTLRAHSNQLL-SFP-ELA  449 (1081)
T ss_pred             ccceeeeeeccccccc-----CCHHHHhchHHhHHHhcccchhhh-hhH----HHHhhhhhHHHhhcCCcee-ech-hhh
Confidence            4466899999999986     677788999999999999999998 777    8999999999999999998 567 789


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                      .++.|+.+|++.|+++...-+ ....-++|++||+++|.
T Consensus       450 ~l~qL~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCcceEEecccchhhhhhhh-hhCCCcccceeeccCCc
Confidence            999999999999999873322 22233899999999997

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=7.9e-11  Score=93.62  Aligned_cols=103  Identities=28%  Similarity=0.295  Sum_probs=68.6

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.|++|+|.+..       ...+..+++|+.||||+|.++.. .+    .-..+.+++.|.|+.|.+.  ....++.+.+
T Consensus       310 r~L~lS~N~i~~-------v~nLa~L~~L~~LDLS~N~Ls~~-~G----wh~KLGNIKtL~La~N~iE--~LSGL~KLYS  375 (490)
T KOG1259|consen  310 RRLILSQNRIRT-------VQNLAELPQLQLLDLSGNLLAEC-VG----WHLKLGNIKTLKLAQNKIE--TLSGLRKLYS  375 (490)
T ss_pred             eEEeccccceee-------ehhhhhcccceEeecccchhHhh-hh----hHhhhcCEeeeehhhhhHh--hhhhhHhhhh
Confidence            555666665554       22345566677777777766653 22    3345666667777777664  2334667788


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |..||+++|+|...-.-..++++|.|+++.|.+|++.
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            8999999999886323345888999999999999988

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.85  E-value=5.2e-09  Score=59.96  Aligned_cols=41  Identities=39%  Similarity=0.738  Sum_probs=29.1

Q ss_pred             HHhHHHHHHHHhcccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEec
Q 045715            9 ETERTALLEIKSFFIS-VSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCS   59 (199)
Q Consensus         9 ~~~~~al~~~~~~~~~-~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~   59 (199)
                      ++|++||++||+++.+ +.      ..+.+|....   ..+|| +|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~---~~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS------GVLSSWNPSS---DSDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-------CCCTT--TT-----S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC------cccccCCCcC---CCCCe-eeccEEeC
Confidence            6799999999999985 43      4799999810   27999 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.79  E-value=5.9e-10  Score=91.57  Aligned_cols=88  Identities=25%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .|..+..|.+|++..|+++- +|.   +....++++..|||..|+++ ..|..+--+.+|+.||+++|.|++ +|. .++
T Consensus       223 ef~gcs~L~Elh~g~N~i~~-lpa---e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~-sLg  295 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEM-LPA---EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY-SLG  295 (565)
T ss_pred             CCCccHHHHHHHhcccHHHh-hHH---HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc-ccc
Confidence            34444444444444444443 222   02235555666666666665 455555555556666666666655 554 555


Q ss_pred             CCCCCCEEeCcCCccC
Q 045715          175 KLKNLEALDLSSNYYI  190 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~  190 (199)
                      ++ +|+.|.+.+|.+.
T Consensus       296 nl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  296 NL-HLKFLALEGNPLR  310 (565)
T ss_pred             cc-eeeehhhcCCchH
Confidence            55 5566666555553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=1.6e-09  Score=86.27  Aligned_cols=101  Identities=32%  Similarity=0.361  Sum_probs=78.0

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +++|||+|.|+.     + .+.+.-+|.++.|++|+|.+...  +    .+..+++|+.|||++|.++ .+...-..+.+
T Consensus       287 telDLS~N~I~~-----i-DESvKL~Pkir~L~lS~N~i~~v--~----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  287 TELDLSGNLITQ-----I-DESVKLAPKLRRLILSQNRIRTV--Q----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             hhccccccchhh-----h-hhhhhhccceeEEeccccceeee--h----hhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            678888888875     2 33445578889999999988863  2    6778888999999999887 34444456777


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .++|.|+.|.+.. +.  .++.+-+|..||+++|+|.
T Consensus       354 IKtL~La~N~iE~-LS--GL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  354 IKTLKLAQNKIET-LS--GLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             EeeeehhhhhHhh-hh--hhHhhhhheeccccccchh
Confidence            8888999998876 43  5788889999999999886

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.76  E-value=6.4e-09  Score=84.42  Aligned_cols=116  Identities=27%  Similarity=0.312  Sum_probs=56.3

Q ss_pred             ccceeccCCCccccccccccccccCCC-CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Chhh
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPF-EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPY  147 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~  147 (199)
                      ++.|+++.|.+...+.. .....+..+ ++|+.|++++|.+++.........+..+++|++|++++|.+++.    ++..
T Consensus       110 L~~L~ls~~~~~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLR-LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHH-HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            45556666555432211 111223344 56666666666666321111111344555666666666666532    2223


Q ss_pred             hcCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          148 LNTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       148 ~~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+++|+.|++++|.+++.    ++. .+..+++|++|++++|.++
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~-~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAE-TLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHH-HhcccCCCCEEecCCCcCc
Confidence            34445666666666665531    111 3445556666666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.74  E-value=3e-09  Score=87.18  Aligned_cols=93  Identities=27%  Similarity=0.315  Sum_probs=82.7

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ...|..+++|+.|+|++|+++++-+.    +|.++..+++|.|..|++.......|.++..|++|+|.+|+|+...| ..
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~a  341 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GA  341 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-cc
Confidence            44588999999999999999998888    99999999999999999986666778999999999999999998444 58


Q ss_pred             ccCCCCCCEEeCcCCccC
Q 045715          173 LAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~l~  190 (199)
                      |..+.+|..|+|-.|.+.
T Consensus       342 F~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             ccccceeeeeehccCccc
Confidence            999999999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.72  E-value=8.2e-09  Score=83.78  Aligned_cols=38  Identities=37%  Similarity=0.388  Sum_probs=17.1

Q ss_pred             CCCCEEecCCCcCCC----ccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEG----SRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +.|+.|++++|.++.    .+.. .+..+++|+.+++++|.++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAE-VLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHH-HHhcCCCccEEECCCCCCc
Confidence            445555555555441    1111 2333445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.64  E-value=3.7e-08  Score=88.69  Aligned_cols=59  Identities=27%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      +|+.|++++|.++. +|..+.  ++|+.|++++|+++. +|. .+  .++|+.|+|++|+|+  .+|.
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~-~l--p~~L~~LdLs~N~Lt--~LP~  384 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPE-TL--PPTITTLDVSRNALT--NLPE  384 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CCh-hh--cCCcCEEECCCCcCC--CCCH
Confidence            45555555555542 333332  466677777777665 554 33  256777777777776  4554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.62  E-value=6.5e-08  Score=87.11  Aligned_cols=79  Identities=19%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      ..|+.|++++|.+++ +|.    .   .++|+.|++++|+++. +|..+   .+|+.|++++|+++. +|. .+.++++|
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~----l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~-sl~~L~~L  447 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPV----L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPE-SLIHLSSE  447 (788)
T ss_pred             cccceEEecCCcccC-CCC----c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cCh-HHhhccCC
Confidence            357778888888776 553    2   3578888888888874 56432   467889999999986 887 78999999


Q ss_pred             CEEeCcCCccCCC
Q 045715          180 EALDLSSNYYIHG  192 (199)
Q Consensus       180 ~~L~Ls~N~l~~~  192 (199)
                      +.|+|++|+|++.
T Consensus       448 ~~LdLs~N~Ls~~  460 (788)
T PRK15387        448 TTVNLEGNPLSER  460 (788)
T ss_pred             CeEECCCCCCCch
Confidence            9999999999843

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.55  E-value=8.2e-09  Score=88.11  Aligned_cols=93  Identities=24%  Similarity=0.301  Sum_probs=71.2

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      +..++.+.+|..||.+.|.+.. +|.    .++.+.+|+.|.+..|++. .+|.++..|+ |..||++.|++.. ||. .
T Consensus       159 p~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~-iPv-~  229 (722)
T KOG0532|consen  159 PEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY-LPV-D  229 (722)
T ss_pred             CcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee-cch-h
Confidence            3344556667777777777766 454    6777888888888888887 5677777554 8899999999988 897 7


Q ss_pred             ccCCCCCCEEeCcCCccCCCCcCC
Q 045715          173 LAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      |.+|+.|++|-|.+|.++  +.|+
T Consensus       230 fr~m~~Lq~l~LenNPLq--SPPA  251 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ--SPPA  251 (722)
T ss_pred             hhhhhhheeeeeccCCCC--CChH
Confidence            999999999999999998  5453

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.51  E-value=1.3e-07  Score=54.33  Aligned_cols=36  Identities=39%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|++++|+|+. +|+ .+.++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCc-hHhCCCCCCEEEecCCCCC
Confidence            34455555555544 443 3455555555555555554

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.50  E-value=3.9e-07  Score=82.17  Aligned_cols=60  Identities=22%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc-------------CC----CCCCEEeCcCCccCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA-------------KL----KNLEALDLSSNYYIH  191 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~-------------~l----~~L~~L~Ls~N~l~~  191 (199)
                      .|+.|++++|+++ .+|.   ..++|+.|+|++|++++ +|. ...             .+    .+|+.|+|++|+|+ 
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-  355 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-  355 (788)
T ss_pred             hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCC-CcccccccccccCccccccccccccceEecCCCccC-
Confidence            4555666666665 2333   23567888888888776 543 111             11    25666666666666 


Q ss_pred             CCcCC
Q 045715          192 GSLEG  196 (199)
Q Consensus       192 ~~ip~  196 (199)
                       .+|.
T Consensus       356 -~LP~  359 (788)
T PRK15387        356 -SLPT  359 (788)
T ss_pred             -CCCC
Confidence             6664

>PLN03210 Resistant to P

Probab=98.47  E-value=8.6e-07  Score=83.95  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|++++|.+..     + +..+..+++|+.|+|+++.....+|     .+..+++|+.|+|++|..-..+|..++.+
T Consensus       612 ~L~~L~L~~s~l~~-----L-~~~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        612 NLVKLQMQGSKLEK-----L-WDGVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCcEEECcCccccc-----c-ccccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhcc
Confidence            44556666665543     1 2234556677777777655434344     45666677777777665545666666777


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN  187 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N  187 (199)
                      ++|+.|++++|.....+|. .+ ++++|+.|++++|
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCC
Confidence            7777777776543333554 22 4555555555554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.45  E-value=1.1e-06  Score=83.35  Aligned_cols=104  Identities=20%  Similarity=0.154  Sum_probs=58.6

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .++.|++++|....     ..|..+.++++|+.|++++|..-+.+|.    .+ .+++|+.|++++|..-..+|..   .
T Consensus       779 sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~  845 (1153)
T PLN03210        779 SLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---S  845 (1153)
T ss_pred             cchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---c
Confidence            34555555554322     1144566777777777777654444554    33 4566666666665433233322   2


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC-CccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS-NYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~-N~l~  190 (199)
                      ++|+.|+|++|.++. +|. .+..+++|+.|+|++ |++.
T Consensus       846 ~nL~~L~Ls~n~i~~-iP~-si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        846 TNISDLNLSRTGIEE-VPW-WIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             cccCEeECCCCCCcc-ChH-HHhcCCCCCEEECCCCCCcC
Confidence            456666666666665 665 566666777776665 4444

syringae 6; Provisional

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=3.6e-07  Score=52.50  Aligned_cols=37  Identities=41%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      +|++|++++|+++ .+|..+.++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4566666666666 345456666666666666666655

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=3e-08  Score=70.57  Aligned_cols=85  Identities=28%  Similarity=0.421  Sum_probs=47.5

Q ss_pred             CCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715           98 PFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL  176 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  176 (199)
                      ...+|+..+|++|.+.. +|.    .| ..++.++.|+|++|.++ .+|.++..++.|+.|+++.|.+.. .|. .+..+
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~-vi~~L  122 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPR-VIAPL  122 (177)
T ss_pred             CCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chH-HHHHH
Confidence            34455555666666655 333    33 23345566666666665 455556666666666666666655 443 45555


Q ss_pred             CCCCEEeCcCCccC
Q 045715          177 KNLEALDLSSNYYI  190 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~  190 (199)
                      .+|-.|+...|.+.
T Consensus       123 ~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  123 IKLDMLDSPENARA  136 (177)
T ss_pred             HhHHHhcCCCCccc
Confidence            56666666555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.36  E-value=3.1e-08  Score=84.70  Aligned_cols=112  Identities=29%  Similarity=0.329  Sum_probs=84.5

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      +|..++.+|++.|++..     + +..+..+ -|+.|-+++|+++. +|.    .++.+..|..||.+.|.+. .+|..+
T Consensus       119 ~L~~lt~l~ls~NqlS~-----l-p~~lC~l-pLkvli~sNNkl~~-lp~----~ig~~~tl~~ld~s~nei~-slpsql  185 (722)
T KOG0532|consen  119 NLEALTFLDLSSNQLSH-----L-PDGLCDL-PLKVLIVSNNKLTS-LPE----EIGLLPTLAHLDVSKNEIQ-SLPSQL  185 (722)
T ss_pred             hhhHHHHhhhccchhhc-----C-ChhhhcC-cceeEEEecCcccc-CCc----ccccchhHHHhhhhhhhhh-hchHHh
Confidence            34555777787777765     3 3333433 47788888888876 666    7778888888888888887 577888


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      +.+.+|+.|.+..|++.. +|. .+..| .|..||+|.|+++  .||-.|
T Consensus       186 ~~l~slr~l~vrRn~l~~-lp~-El~~L-pLi~lDfScNkis--~iPv~f  230 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLED-LPE-ELCSL-PLIRLDFSCNKIS--YLPVDF  230 (722)
T ss_pred             hhHHHHHHHHHhhhhhhh-CCH-HHhCC-ceeeeecccCcee--ecchhh
Confidence            888888888888888888 787 56654 4888999999998  777654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=1.5e-08  Score=88.86  Aligned_cols=101  Identities=30%  Similarity=0.409  Sum_probs=67.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh-hcCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLT  152 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~  152 (199)
                      .+.+.++|.+..     + ...+.-++.|+.|||+.|+++...      .+..++.|++|||++|.++ .+|.. ..++.
T Consensus       167 ~~a~fsyN~L~~-----m-D~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~  233 (1096)
T KOG1859|consen  167 ATASFSYNRLVL-----M-DESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK  233 (1096)
T ss_pred             hhhhcchhhHHh-----H-HHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhc-cccccchhhhh
Confidence            445556666654     1 334455677888888888887642      5677788888888888887 44432 22333


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                       |+.|.+++|.++. +-  .+.++.+|+.||+++|-|.+
T Consensus       234 -L~~L~lrnN~l~t-L~--gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  234 -LQLLNLRNNALTT-LR--GIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             -heeeeecccHHHh-hh--hHHhhhhhhccchhHhhhhc
Confidence             7888888888776 32  46777888888888887764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.33  E-value=4.1e-07  Score=76.40  Aligned_cols=85  Identities=34%  Similarity=0.463  Sum_probs=47.7

Q ss_pred             CCCCCcEEECCCCccCccccccchhhccCCC-CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715           98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLR-QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL  176 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  176 (199)
                      .++.++.|++.+|.++. ++.    ....+. +|+.|++++|++. .+|..+..++.|+.|+++.|+++. +|. ....+
T Consensus       114 ~~~~l~~L~l~~n~i~~-i~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~-~~~~~  185 (394)
T COG4886         114 ELTNLTSLDLDNNNITD-IPP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPK-LLSNL  185 (394)
T ss_pred             cccceeEEecCCccccc-Ccc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhh-hhhhh
Confidence            34556666666666665 332    344442 5666666666665 344445566666666666666665 554 33355


Q ss_pred             CCCCEEeCcCCccC
Q 045715          177 KNLEALDLSSNYYI  190 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~  190 (199)
                      +.|+.|++++|+++
T Consensus       186 ~~L~~L~ls~N~i~  199 (394)
T COG4886         186 SNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhhheeccCCccc
Confidence            66666666666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.4e-08  Score=87.52  Aligned_cols=107  Identities=28%  Similarity=0.301  Sum_probs=83.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ++.++.|||+.|++..       ...+..+++|++|||++|.+.. +|..   .-.++ .|+.|.+.+|.++.  ...+.
T Consensus       186 l~ale~LnLshNk~~~-------v~~Lr~l~~LkhLDlsyN~L~~-vp~l---~~~gc-~L~~L~lrnN~l~t--L~gie  251 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK-------VDNLRRLPKLKHLDLSYNCLRH-VPQL---SMVGC-KLQLLNLRNNALTT--LRGIE  251 (1096)
T ss_pred             HHHhhhhccchhhhhh-------hHHHHhcccccccccccchhcc-cccc---chhhh-hheeeeecccHHHh--hhhHH
Confidence            4567899999999986       3467789999999999999987 5531   12233 39999999999973  33467


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++.+|+.|||++|-|.+.-....++.+..|+.|.|.+|.+.
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88999999999999987333334677889999999999885

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.21  E-value=2.8e-06  Score=64.26  Aligned_cols=105  Identities=27%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~  148 (199)
                      +.....+||+.|.+..       ...|..++.|..|.|.+|+|+.+.|.    --..++.|+.|.|.+|.+... ....+
T Consensus        41 ~d~~d~iDLtdNdl~~-------l~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pL  109 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-------LDNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPL  109 (233)
T ss_pred             ccccceecccccchhh-------cccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchh
Confidence            3444677888888865       55677889999999999999987765    444567899999999998621 12346


Q ss_pred             cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSS  186 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~  186 (199)
                      ..+|+|++|.+-+|.++. ...   -.+..+++|++||...
T Consensus       110 a~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ccCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence            788999999999998876 221   1366789999998764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.20  E-value=4.7e-07  Score=76.74  Aligned_cols=85  Identities=38%  Similarity=0.408  Sum_probs=56.1

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..+++|+.|++.+|.+.....     .+..+++|++|++++|.|+...  .+..++.|+.|++++|.|+. +.  .+..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~--~~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-IS--GLES  160 (414)
T ss_pred             cccccceeeeeccccchhhccc-----chhhhhcchheecccccccccc--chhhccchhhheeccCcchh-cc--CCcc
Confidence            4566777777777777776321     2566777777777777776332  24555667777777777766 44  3556


Q ss_pred             CCCCCEEeCcCCccC
Q 045715          176 LKNLEALDLSSNYYI  190 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~  190 (199)
                      ++.|+.+++++|+++
T Consensus       161 l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIV  175 (414)
T ss_pred             chhhhcccCCcchhh
Confidence            777777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.18  E-value=1e-06  Score=74.01  Aligned_cols=79  Identities=25%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|+++.|.+..     + +..+..++.|+.|++++|+++. +|.    ....++.|+.|++++|+++ .+|......
T Consensus       141 nL~~L~l~~N~i~~-----l-~~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~~~~L~~L~ls~N~i~-~l~~~~~~~  208 (394)
T COG4886         141 NLKELDLSDNKIES-----L-PSPLRNLPNLKNLDLSFNDLSD-LPK----LLSNLSNLNNLDLSGNKIS-DLPPEIELL  208 (394)
T ss_pred             hcccccccccchhh-----h-hhhhhccccccccccCCchhhh-hhh----hhhhhhhhhheeccCCccc-cCchhhhhh
Confidence            56778888887765     1 1344566777777777777766 333    3335555666666666655 334332223


Q ss_pred             CCCCEEecCCC
Q 045715          152 TSLTTLNLRYN  162 (199)
Q Consensus       152 ~~L~~L~Ls~N  162 (199)
                      ..|+++.+++|
T Consensus       209 ~~L~~l~~~~N  219 (394)
T COG4886         209 SALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhcCC
Confidence            33444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=1e-07  Score=67.94  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.++|+.|.+..     +++..-..++.++.|+|++|.++. +|.    ++..++.|+.|++++|.+. ..|..+..+.+
T Consensus        56 ~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisd-vPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~  124 (177)
T KOG4579|consen   56 TKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISD-VPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIK  124 (177)
T ss_pred             EEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhh-chH----HHhhhHHhhhcccccCccc-cchHHHHHHHh
Confidence            445667777764     445545567899999999999998 788    8999999999999999998 67777777999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      |..|+..+|.+.. +|-+ +-.-...-..++.++.+.+
T Consensus       125 l~~Lds~~na~~e-id~d-l~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  125 LDMLDSPENARAE-IDVD-LFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             HHHhcCCCCcccc-CcHH-HhccccHHHHHhcCCcccc
Confidence            9999999999876 7764 3222333334456666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=4.7e-07  Score=76.73  Aligned_cols=104  Identities=33%  Similarity=0.395  Sum_probs=81.1

Q ss_pred             cCCccceeccCCCccccccccccccc-cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSL-FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      +.++..+++..|.+..       ... +..+++|++|++++|.|+.+.      .+..++.|+.|++++|.++.  ...+
T Consensus        94 ~~~l~~l~l~~n~i~~-------i~~~l~~~~~L~~L~ls~N~I~~i~------~l~~l~~L~~L~l~~N~i~~--~~~~  158 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-------IENLLSSLVNLQVLDLSFNKITKLE------GLSTLTLLKELNLSGNLISD--ISGL  158 (414)
T ss_pred             ccceeeeeccccchhh-------cccchhhhhcchheecccccccccc------chhhccchhhheeccCcchh--ccCC
Confidence            3455677888888865       222 567899999999999999854      56777889999999999973  3445


Q ss_pred             cCCCCCCEEecCCCcCCCccchhh-ccCCCCCCEEeCcCCccC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~-~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..++.|+.+++++|.+.. +.. . ...+.+|+.+.++.|.+.
T Consensus       159 ~~l~~L~~l~l~~n~i~~-ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  159 ESLKSLKLLDLSYNRIVD-IEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccchhhhcccCCcchhhh-hhh-hhhhhccchHHHhccCCchh
Confidence            668889999999999987 554 1 477888899999999886

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=5.1e-07  Score=75.10  Aligned_cols=88  Identities=30%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh--hhhcCCCCCCEEecCCCcCCCc-cchh---
Q 045715           98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL--PYLNTLTSLTTLNLRYNSIEGS-RTKQ---  171 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-ip~~---  171 (199)
                      .+|.|+.|+|..|........    ...-+..|+.|||++|++-. .+  ...+.++.|..|+++.+.+... +|..   
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccch
Confidence            345555555555532221111    23334556666666665531 12  2344555555555555555441 1110   


Q ss_pred             -hccCCCCCCEEeCcCCccC
Q 045715          172 -GLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       172 -~~~~l~~L~~L~Ls~N~l~  190 (199)
                       ....+++|+.|+++.|++.
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhcccccceeeecccCccc
Confidence             0234555666666666553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.09  E-value=1.8e-06  Score=79.19  Aligned_cols=107  Identities=25%  Similarity=0.256  Sum_probs=82.7

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      +++|-+..|..   ....+....|..++.|++|||++|.--+.+|.    .++.|-+|++|++++..++ .+|..++++.
T Consensus       547 L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk  618 (889)
T KOG4658|consen  547 LRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLK  618 (889)
T ss_pred             cceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence            44555555542   01114455688899999999999887777898    9999999999999999998 7899999999


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                      +|.+|++..+.....+|. ....+.+|++|.+-.-.
T Consensus       619 ~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            999999998876554543 56669999999886543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.4e-06  Score=71.17  Aligned_cols=111  Identities=24%  Similarity=0.293  Sum_probs=76.5

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhh---
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPY---  147 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~---  147 (199)
                      ++..|+|.+|....     +.......+..|+.|||++|++-. .+.  ....+.++.|+.|+++.+.+... .|+.   
T Consensus       223 sl~~L~L~~N~~~~-----~~~~~~~i~~~L~~LdLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  223 SLEVLYLEANEIIL-----IKATSTKILQTLQELDLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             cHHHhhhhcccccc-----eecchhhhhhHHhhccccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccch
Confidence            34556666664221     122333457889999999999876 331  01577899999999999999643 2222   


Q ss_pred             --hcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          148 --LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       148 --~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                        ...+++|++|+++.|++...-.-..+..+++|++|.+..|.|+
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence              3568999999999999976222224556788899998899887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.95  E-value=2.4e-06  Score=69.26  Aligned_cols=118  Identities=25%  Similarity=0.204  Sum_probs=87.2

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh--
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL--  148 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~--  148 (199)
                      +.++.+.+++|.|...|. .+....|..+++|+.|||..|-++..-.......+..+++|++|+++++.+...-...|  
T Consensus       185 ~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            345678888888887776 24456678899999999999998753221111267788899999999999975444433  


Q ss_pred             ---cCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          149 ---NTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ---~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                         ...|+|++|.+.+|.|+..    +.. .+...+.|..|+|++|.+.
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~-~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAA-CMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHH-HHhcchhhHHhcCCccccc
Confidence               2478999999999999852    111 3566889999999999993

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.94  E-value=1.5e-05  Score=60.38  Aligned_cols=86  Identities=28%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCC
Q 045715           99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN  178 (199)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  178 (199)
                      +.+...+||++|.+-. ++     .|..++.|..|.|++|+|+..-|..-.-++.|..|.|.+|.|...-..+.+..+++
T Consensus        41 ~d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            4467889999999886 33     78899999999999999997667665677899999999999986222234778999


Q ss_pred             CCEEeCcCCccC
Q 045715          179 LEALDLSSNYYI  190 (199)
Q Consensus       179 L~~L~Ls~N~l~  190 (199)
                      |+.|.+-+|+++
T Consensus       115 L~~Ltll~Npv~  126 (233)
T KOG1644|consen  115 LEYLTLLGNPVE  126 (233)
T ss_pred             cceeeecCCchh
Confidence            999999999887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.71  E-value=2.2e-05  Score=72.24  Aligned_cols=85  Identities=28%  Similarity=0.289  Sum_probs=72.7

Q ss_pred             CCCCcEEECCCCc--cCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715           99 FEELQRLDLPMNW--FTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL  176 (199)
Q Consensus        99 l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  176 (199)
                      .+.|+.|-+..|.  +......    .|..++.|++|||++|.=-+.+|..++.+-+|++|+|+...+.. +|. .+.++
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~----ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~-~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE----FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPS-GLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH----HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cch-HHHHH
Confidence            4478888888886  4443333    58889999999999987777899999999999999999999997 998 89999


Q ss_pred             CCCCEEeCcCCcc
Q 045715          177 KNLEALDLSSNYY  189 (199)
Q Consensus       177 ~~L~~L~Ls~N~l  189 (199)
                      ..|.+|++..+.-
T Consensus       618 k~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  618 KKLIYLNLEVTGR  630 (889)
T ss_pred             Hhhheeccccccc
Confidence            9999999998764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.64  E-value=3.1e-05  Score=60.61  Aligned_cols=85  Identities=29%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             ccccCCCCCCcEEECCCC--ccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh---hcCCCCCCEEecCCCcCCCc
Q 045715           93 MSLFHPFEELQRLDLPMN--WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY---LNTLTSLTTLNLRYNSIEGS  167 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~  167 (199)
                      ...|..+++|+.|.+|.|  ++.+..+.    ....+++|++|+++.|++..  ++.   +..+.+|..|++.++..+. 
T Consensus        58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~-  130 (260)
T KOG2739|consen   58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTN-  130 (260)
T ss_pred             cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccc-
Confidence            445667788899999998  55554444    44556889999999998862  333   3456667788888877665 


Q ss_pred             cc---hhhccCCCCCCEEeC
Q 045715          168 RT---KQGLAKLKNLEALDL  184 (199)
Q Consensus       168 ip---~~~~~~l~~L~~L~L  184 (199)
                      +-   ...|.-+++|++|+-
T Consensus       131 l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  131 LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cccHHHHHHHHhhhhccccc
Confidence            21   113556777777653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.44  E-value=5.9e-05  Score=61.39  Aligned_cols=118  Identities=21%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcccccc---------chhhccCCCCCCEEEcCCCCCCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR---------AYDSFGSLRQLKMLNLGNNDFND  142 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---------~~~~~~~l~~L~~L~Ls~N~l~~  142 (199)
                      .++.||||.|.+...+...+ -..+.....|++|+|.+|.+.-.-...         -......-+.|+++..++|++..
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ceeEeeccccccCccchHHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            44677777777776554211 223344566666666666654211110         00012233445555555555532


Q ss_pred             CCh----hhhcCCCCCCEEecCCCcCCCc---cchhhccCCCCCCEEeCcCCccC
Q 045715          143 NIL----PYLNTLTSLTTLNLRYNSIEGS---RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       143 ~~p----~~~~~l~~L~~L~Ls~N~l~~~---ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .-.    ..|...+.|+.+.++.|.|...   .-...+..+++|+.|||.+|-|+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            111    1233444555555555544320   00112444555555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=0.00022  Score=64.16  Aligned_cols=111  Identities=21%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~  148 (199)
                      |+.++.|.+++-.+....+    .....++++|..||+|+..++..  .    .++.+++|+.|.+.+=.+.. ..-..+
T Consensus       147 LPsL~sL~i~~~~~~~~dF----~~lc~sFpNL~sLDIS~TnI~nl--~----GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDF----SQLCASFPNLRSLDISGTNISNL--S----GISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             CcccceEEecCceecchhH----HHHhhccCccceeecCCCCccCc--H----HHhccccHHHHhccCCCCCchhhHHHH
Confidence            4444555544433332111    23345788888888888888874  2    67778888888777666642 233456


Q ss_pred             cCCCCCCEEecCCCcCCCc--cchh---hccCCCCCCEEeCcCCccC
Q 045715          149 NTLTSLTTLNLRYNSIEGS--RTKQ---GLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~--ip~~---~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+|++|+.||+|.......  +...   .-..+|.|+.||.|+..++
T Consensus       217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            6788888888887665541  1110   1235788888888876554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.37  E-value=0.00014  Score=57.06  Aligned_cols=84  Identities=30%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC--CCCCCChhhhcCCCCCCEEecCCCcCCC--ccchhhcc
Q 045715           99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--DFNDNILPYLNTLTSLTTLNLRYNSIEG--SRTKQGLA  174 (199)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~  174 (199)
                      +..|+.|.+.+..++...      .|..|++|+.|.++.|  ++++.++...-.+|+|++|+|+.|+|..  .++  .+.
T Consensus        42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLK  113 (260)
T ss_pred             ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhh
Confidence            444555555555555422      4556667777777777  4444444444455777777777777653  122  245


Q ss_pred             CCCCCCEEeCcCCccC
Q 045715          175 KLKNLEALDLSSNYYI  190 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~  190 (199)
                      .+.+|..|++..|..+
T Consensus       114 ~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhcchhhhhcccCCcc
Confidence            5666666777666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=1e-05  Score=64.25  Aligned_cols=84  Identities=32%  Similarity=0.343  Sum_probs=63.6

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhhcCCCCCCEEecCCCcCCCccchh-
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYLNTLTSLTTLNLRYNSIEGSRTKQ-  171 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ip~~-  171 (199)
                      .....++.|++|.||-|+|+...      .+..++.|++|+|..|.|.... ...+.++|+|+.|.|..|.-.+.-+.. 
T Consensus        35 sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nY  108 (388)
T KOG2123|consen   35 SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNY  108 (388)
T ss_pred             HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhH
Confidence            34567899999999999998754      5778889999999999997322 234678999999999999888744431 


Q ss_pred             ---hccCCCCCCEEe
Q 045715          172 ---GLAKLKNLEALD  183 (199)
Q Consensus       172 ---~~~~l~~L~~L~  183 (199)
                         .+..||+|+.||
T Consensus       109 R~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  109 RRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHcccchhcc
Confidence               255678887775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.00012  Score=58.70  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh-hhcCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLT  152 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~  152 (199)
                      +.+||..|.++.+...   ...+.++|.|+.|+|+.|.+...+..    .-..+.+|+.|-|.+..+...... .+..+|
T Consensus        74 ~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~----lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKS----LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCcccc----CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            4556666666543321   33445666666666666666654432    112445666666666665433322 334556


Q ss_pred             CCCEEecCCCc
Q 045715          153 SLTTLNLRYNS  163 (199)
Q Consensus       153 ~L~~L~Ls~N~  163 (199)
                      .++.|.++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            66666666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.20  E-value=0.0011  Score=46.47  Aligned_cols=97  Identities=21%  Similarity=0.360  Sum_probs=56.4

Q ss_pred             ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715           91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK  170 (199)
Q Consensus        91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  170 (199)
                      +....|...++|+.+.+..+ +......    .|..++.|+.+.+.. .+.......|..+++|+.+.+..+ +.. ++.
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~----~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~-i~~   97 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTSIGDN----AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITE-IGS   97 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSCE-TT----TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BE-EHT
T ss_pred             eChhhccccccccccccccc-cccccee----eeecccccccccccc-cccccccccccccccccccccCcc-ccE-Ech
Confidence            45667888888999998875 6664444    788888899999976 443233456777889999999776 554 666


Q ss_pred             hhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          171 QGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       171 ~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      ..|.+. .|+.+.+.. .++  .++...|
T Consensus        98 ~~f~~~-~l~~i~~~~-~~~--~i~~~~F  122 (129)
T PF13306_consen   98 SSFSNC-NLKEINIPS-NIT--KIEENAF  122 (129)
T ss_dssp             TTTTT--T--EEE-TT-B-S--S----GG
T ss_pred             hhhcCC-CceEEEECC-Ccc--EECCccc
Confidence            677777 889888876 444  3454443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.00013  Score=58.54  Aligned_cols=91  Identities=22%  Similarity=0.266  Sum_probs=66.0

Q ss_pred             CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCC
Q 045715           98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK  177 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  177 (199)
                      ..+.++.+||.+|.|+.-.  +.+.-+.+|+.|+.|+|+.|++...+...-..+.+|++|-|.+..+.-.--...+..+|
T Consensus        69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            3567899999999998632  11225678999999999999997544332245678999999887776433333567888


Q ss_pred             CCCEEeCcCCccC
Q 045715          178 NLEALDLSSNYYI  190 (199)
Q Consensus       178 ~L~~L~Ls~N~l~  190 (199)
                      .++.|++|.|.+.
T Consensus       147 ~vtelHmS~N~~r  159 (418)
T KOG2982|consen  147 KVTELHMSDNSLR  159 (418)
T ss_pred             hhhhhhhccchhh
Confidence            8999999998554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.19  E-value=0.00083  Score=47.03  Aligned_cols=97  Identities=20%  Similarity=0.293  Sum_probs=61.2

Q ss_pred             ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715           91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK  170 (199)
Q Consensus        91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  170 (199)
                      +....|...++|+.+.+.. .+..+-..    .|..+++|+.+.+..+ +...-...|..+++|+.+.+.+ .+.. ++.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~----~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~   74 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGEN----AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGD   74 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TT----TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-T
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChh----hccccccccccccccc-ccccceeeeecccccccccccc-cccc-ccc
Confidence            3456788888999999985 56765555    8889989999999886 6644455788888999999976 5544 566


Q ss_pred             hhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          171 QGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       171 ~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      ..|..+++|+.+.+..+ ++  .++...
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~--~i~~~~   99 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-IT--EIGSSS   99 (129)
T ss_dssp             TTTTT-TTECEEEETTT--B--EEHTTT
T ss_pred             ccccccccccccccCcc-cc--EEchhh
Confidence            67888999999999776 54  344433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.04  E-value=0.00043  Score=62.36  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCC
Q 045715           97 HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL  176 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  176 (199)
                      ..||.|+.|.+++-.+...-   +...+..+++|..||+|+.+++..  ..++.+++|+.|.+.+=.+...---..+.+|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             hhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            35788888888887665421   112566788999999999998843  5678889999998887666642112247789


Q ss_pred             CCCCEEeCcCCccC
Q 045715          177 KNLEALDLSSNYYI  190 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~  190 (199)
                      ++|++||+|.....
T Consensus       220 ~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  220 KKLRVLDISRDKNN  233 (699)
T ss_pred             cCCCeeeccccccc
Confidence            99999999987665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=9.5e-05  Score=58.84  Aligned_cols=87  Identities=26%  Similarity=0.242  Sum_probs=70.8

Q ss_pred             CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCC
Q 045715           98 PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK  177 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  177 (199)
                      .+...+.|++-++.++++.      ....|+.|++|.|+-|+++.  ...+..+++|+.|+|..|.|...-....+.+++
T Consensus        17 dl~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            4567788898899988742      56789999999999999984  345788999999999999998732333578999


Q ss_pred             CCCEEeCcCCccCCC
Q 045715          178 NLEALDLSSNYYIHG  192 (199)
Q Consensus       178 ~L~~L~Ls~N~l~~~  192 (199)
                      +|+.|-|..|.=.+.
T Consensus        89 sLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGE  103 (388)
T ss_pred             hhhhHhhccCCcccc
Confidence            999999999976643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.53  E-value=4e-05  Score=59.48  Aligned_cols=83  Identities=17%  Similarity=0.190  Sum_probs=36.6

Q ss_pred             CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCC
Q 045715           99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN  178 (199)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  178 (199)
                      +.+.+.||++.|++.. ...    .|+-++.|.+|+++.|++. ..|..++.+..+..+++..|..+. .|. .++..+.
T Consensus        41 ~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~-s~~k~~~  112 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPK-SQKKEPH  112 (326)
T ss_pred             cceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCc-cccccCC
Confidence            3444444444444433 122    3444444444444444444 334444444444444444444443 443 4444444


Q ss_pred             CCEEeCcCCcc
Q 045715          179 LEALDLSSNYY  189 (199)
Q Consensus       179 L~~L~Ls~N~l  189 (199)
                      ++.+++-.|.+
T Consensus       113 ~k~~e~k~~~~  123 (326)
T KOG0473|consen  113 PKKNEQKKTEF  123 (326)
T ss_pred             cchhhhccCcc
Confidence            44444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.37  E-value=0.0025  Score=31.84  Aligned_cols=20  Identities=45%  Similarity=0.433  Sum_probs=11.2

Q ss_pred             CCCCEEeCcCCccCCCCcCCCC
Q 045715          177 KNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      ++|+.|+|++|+|+  .+|...
T Consensus         2 ~~L~~L~L~~N~l~--~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS--SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC--cCCHHH
Confidence            45566666666665  445443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.37  E-value=0.0025  Score=31.84  Aligned_cols=20  Identities=45%  Similarity=0.433  Sum_probs=11.2

Q ss_pred             CCCCEEeCcCCccCCCCcCCCC
Q 045715          177 KNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      ++|+.|+|++|+|+  .+|...
T Consensus         2 ~~L~~L~L~~N~l~--~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS--SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC--cCCHHH
Confidence            45566666666665  445443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.31  E-value=0.016  Score=49.04  Aligned_cols=14  Identities=0%  Similarity=-0.057  Sum_probs=7.3

Q ss_pred             CCccceeccCCCcc
Q 045715           71 NYTTKFNYSYNSVY   84 (199)
Q Consensus        71 ~~~~~L~ls~N~~~   84 (199)
                      ..++.|+++++.+.
T Consensus        52 ~~l~~L~Is~c~L~   65 (426)
T PRK15386         52 RASGRLYIKDCDIE   65 (426)
T ss_pred             cCCCEEEeCCCCCc
Confidence            44455666655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.15  E-value=0.0015  Score=31.44  Aligned_cols=11  Identities=27%  Similarity=0.347  Sum_probs=4.4

Q ss_pred             CEEecCCCcCC
Q 045715          155 TTLNLRYNSIE  165 (199)
Q Consensus       155 ~~L~Ls~N~l~  165 (199)
                      ++|+|++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.04  E-value=0.0031  Score=30.28  Aligned_cols=16  Identities=38%  Similarity=0.337  Sum_probs=8.9

Q ss_pred             CcEEECCCCccCccccc
Q 045715          102 LQRLDLPMNWFTGIYEN  118 (199)
Q Consensus       102 L~~L~Ls~N~l~~~~p~  118 (199)
                      |++|||++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            555666666655 3554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.97  E-value=0.015  Score=46.44  Aligned_cols=46  Identities=28%  Similarity=0.331  Sum_probs=26.3

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN  141 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  141 (199)
                      +..+++|+..+||.|.+....|...-+.++.-+.|.+|.+++|.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            3455666666666666665555422233445556666666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.00038  Score=56.01  Aligned_cols=108  Identities=21%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC-CCCCCChh-hhcC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDNILP-YLNT  150 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~-~~~~  150 (199)
                      ++.||||...++...+    ...+..+.+|+.|.|.++++.+.+..    .+..-..|+.|+|+.+ .|+..-.. -+.+
T Consensus       187 lq~lDLS~s~it~stl----~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s  258 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTL----HGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNSNLVRLNLSMCSGFTENALQLLLSS  258 (419)
T ss_pred             hHHhhcchhheeHHHH----HHHHHHHHhhhhccccccccCcHHHH----HHhccccceeeccccccccchhHHHHHHHh
Confidence            4778888877776433    23455667778888888887776655    6666666777776654 33321111 2455


Q ss_pred             CCCCCEEecCCCcCCCcc----------------------------chhhccCCCCCCEEeCcCCc
Q 045715          151 LTSLTTLNLRYNSIEGSR----------------------------TKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~i----------------------------p~~~~~~l~~L~~L~Ls~N~  188 (199)
                      ++.|..|+|+.+.+....                            -......+++|.+||||+|.
T Consensus       259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            666666666665443310                            01123467888899998753

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.69  E-value=0.014  Score=46.73  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc---ccccc---chhhccCCCCCCEEEcCCCCCCCCC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG---IYENR---AYDSFGSLRQLKMLNLGNNDFNDNI  144 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~---~~p~~---~~~~~~~l~~L~~L~Ls~N~l~~~~  144 (199)
                      ..++.++||+|.|.......+ ...+.+-.+|+..+++.-....   .++..   ....+.++++|+..+||+|.|....
T Consensus        30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            344667777777765322111 2344556778888777643221   11110   0125678899999999999998777


Q ss_pred             hhh----hcCCCCCCEEecCCCcCCCccchhh-------------ccCCCCCCEEeCcCCccCCCC
Q 045715          145 LPY----LNTLTSLTTLNLRYNSIEGSRTKQG-------------LAKLKNLEALDLSSNYYIHGS  193 (199)
Q Consensus       145 p~~----~~~l~~L~~L~Ls~N~l~~~ip~~~-------------~~~l~~L~~L~Ls~N~l~~~~  193 (199)
                      |..    ++.-+.|.+|.|++|.+.- +....             ..+-|.|+.+....|++..++
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            764    4566789999999998742 32222             335688999999999987554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.68  E-value=0.007  Score=27.12  Aligned_cols=13  Identities=54%  Similarity=0.667  Sum_probs=5.9

Q ss_pred             CCCEEeCcCCccC
Q 045715          178 NLEALDLSSNYYI  190 (199)
Q Consensus       178 ~L~~L~Ls~N~l~  190 (199)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666655

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.56  E-value=0.054  Score=45.93  Aligned_cols=31  Identities=29%  Similarity=0.225  Sum_probs=18.7

Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN  187 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N  187 (199)
                      +|++|+++++.... +|. .+-  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i~-LP~-~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNII-LPE-KLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCccc-Ccc-ccc--ccCcEEEeccc
Confidence            57777777766543 343 222  46777777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.93  E-value=0.029  Score=27.83  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=13.2

Q ss_pred             CCCCEEecCCCcCCCccchhhc
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ++|+.|+|++|+|+. +|.+.|
T Consensus         2 ~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCc-CCHHHc
Confidence            456777777777766 665433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.93  E-value=0.029  Score=27.83  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=13.2

Q ss_pred             CCCCEEecCCCcCCCccchhhc
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ++|+.|+|++|+|+. +|.+.|
T Consensus         2 ~~L~~L~L~~N~l~~-lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSS-LPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCc-CCHHHc
Confidence            456777777777766 665433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.52  E-value=0.0014  Score=51.02  Aligned_cols=65  Identities=14%  Similarity=0.024  Sum_probs=54.9

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      |.-++.|..|+++.|++.. .|.    .+..+..+..+++..|.++ ..|.+++..+.++++++..|.+..
T Consensus        61 ~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen   61 FSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             hHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence            4556788889999999887 677    7888888899999999988 678889999999999999888754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.0047  Score=49.90  Aligned_cols=88  Identities=25%  Similarity=0.268  Sum_probs=66.6

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCc-CCCccchhhccCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNS-IEGSRTKQGLAKLKN  178 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~  178 (199)
                      +.|++||||+..++...-.   --+..+.+|+.|.|.++++...+...++.-..|+.|+|+... ++..--.-.+.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            4599999999888753211   145678899999999999998888889988999999998754 443111113678899


Q ss_pred             CCEEeCcCCccC
Q 045715          179 LEALDLSSNYYI  190 (199)
Q Consensus       179 L~~L~Ls~N~l~  190 (199)
                      |..|+|+-+-++
T Consensus       262 L~~LNlsWc~l~  273 (419)
T KOG2120|consen  262 LDELNLSWCFLF  273 (419)
T ss_pred             HhhcCchHhhcc
Confidence            999999887665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.33  E-value=0.28  Score=24.52  Aligned_cols=13  Identities=62%  Similarity=0.652  Sum_probs=6.4

Q ss_pred             CCCEEeCcCCccC
Q 045715          178 NLEALDLSSNYYI  190 (199)
Q Consensus       178 ~L~~L~Ls~N~l~  190 (199)
                      +|+.|+++.|+|+
T Consensus         3 ~L~~L~L~~NkI~   15 (26)
T smart00365        3 NLEELDLSQNKIK   15 (26)
T ss_pred             ccCEEECCCCccc
Confidence            4445555555544

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.07  E-value=0.22  Score=24.87  Aligned_cols=17  Identities=35%  Similarity=0.464  Sum_probs=11.1

Q ss_pred             CCCEEeCcCCccCCCCcCC
Q 045715          178 NLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       178 ~L~~L~Ls~N~l~~~~ip~  196 (199)
                      +|+.|++++|+|+  .+|+
T Consensus         3 ~L~~L~vs~N~Lt--~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT--SLPE   19 (26)
T ss_pred             ccceeecCCCccc--cCcc
Confidence            5666777777776  5554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.21  E-value=0.063  Score=41.01  Aligned_cols=80  Identities=29%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC-CCChhhhc-CCCCCCEEecCCCc-CCCccchhhccCCC
Q 045715          101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN-DNILPYLN-TLTSLTTLNLRYNS-IEGSRTKQGLAKLK  177 (199)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~  177 (199)
                      .++.+|-++..|...    +++.+..++.++.|.+.++.-- ....+-++ -.++|+.|+|++|. |+. -....+..++
T Consensus       102 ~IeaVDAsds~I~~e----Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYE----GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHH----HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhh
Confidence            455666666655542    2225555566666665555432 11111222 23566666666554 443 2222345555


Q ss_pred             CCCEEeCc
Q 045715          178 NLEALDLS  185 (199)
Q Consensus       178 ~L~~L~Ls  185 (199)
                      +|+.|.+.
T Consensus       177 nLr~L~l~  184 (221)
T KOG3864|consen  177 NLRRLHLY  184 (221)
T ss_pred             hhHHHHhc
Confidence            55555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.10  E-value=0.26  Score=23.73  Aligned_cols=14  Identities=57%  Similarity=0.667  Sum_probs=8.8

Q ss_pred             CCCCEEeCcCCccC
Q 045715          177 KNLEALDLSSNYYI  190 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~  190 (199)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56777777777775

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=87.95  E-value=0.5  Score=40.25  Aligned_cols=93  Identities=24%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             CCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhhc-CCCCCCEEecCCCc-CCCccchhh
Q 045715           97 HPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYLN-TLTSLTTLNLRYNS-IEGSRTKQG  172 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~ip~~~  172 (199)
                      ...+.|+.|+++++ ......+.........+++|+.|++++.. ++...-..+. .+++|+.|.+.++. ++..--...
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            45677888888763 11111110000133445778888888777 5544444444 36788888876666 443111113


Q ss_pred             ccCCCCCCEEeCcCCcc
Q 045715          173 LAKLKNLEALDLSSNYY  189 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~l  189 (199)
                      ...++.|++|+++.+..
T Consensus       291 ~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhcCcccEEeeecCcc
Confidence            44577788888886543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.95  E-value=0.59  Score=40.86  Aligned_cols=67  Identities=22%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC--CCCCCChhhhcC--CCCCCEEecCCCcCCCc
Q 045715           97 HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--DFNDNILPYLNT--LTSLTTLNLRYNSIEGS  167 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~  167 (199)
                      .+.+.+..+.|++|++.....-.  .--...+.|+.|+|++|  .+.  ...++..  ...|++|.+.+|++...
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT  285 (585)
T ss_pred             cCCcceeeeecccchhhchhhhh--HHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence            35678888889999887642110  01234578899999998  333  1222222  23478889999988763

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.32  E-value=1.1  Score=22.62  Aligned_cols=14  Identities=43%  Similarity=0.422  Sum_probs=10.5

Q ss_pred             CCCCEEeCcCCccC
Q 045715          177 KNLEALDLSSNYYI  190 (199)
Q Consensus       177 ~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|+|++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46778888888775

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=83.20  E-value=0.037  Score=47.96  Aligned_cols=118  Identities=30%  Similarity=0.330  Sum_probs=60.3

Q ss_pred             CccceeccCCCcccccccccccc---ccCCCCCCcEEECCCCccCccccccchhhccCCCC-CCEEEcCCCCCCCCC---
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMS---LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQ-LKMLNLGNNDFNDNI---  144 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~-L~~L~Ls~N~l~~~~---  144 (199)
                      .++.++++.|.+...|...+...   .+....++++|.++++.++...-...-..+...++ +..|++..|++....   
T Consensus       173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~  252 (478)
T KOG4308|consen  173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK  252 (478)
T ss_pred             chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence            34566666666654333222111   12245667777777777663211000012333444 555777777765321   


Q ss_pred             -hhhhcCC-CCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          145 -LPYLNTL-TSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       145 -p~~~~~l-~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                       .+.+..+ +.++.++++.|.|+..    +.. .+..++.++.+.++.|.+.
T Consensus       253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~-~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  253 LLPCLSVLSETLRVLDLSRNSITEKGVRDLAE-VLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhcccchhhhhhhhhcCCccccchHHHHH-HHhhhHHHHHhhcccCccc
Confidence             1223334 4567777777777652    121 3445567777777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 7e-26
 Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 6   GCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRV 65
             L  E   L+  K           D  +LP W         + C  + GV C     +V
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSSN-----KNPCT-FDGVTCR--DDKV 52

Query: 66  MQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG 125
             + L+          S           S       L+ L L  +   G     +   F 
Sbjct: 53  TSIDLS----------SKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-----SVSGFK 97

Query: 126 SLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALD 183
               L  L+L  N  +  +     L + + L  LN+  N+++      G  KL +LE LD
Sbjct: 98  CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157

Query: 184 LSSNYYIHGSL 194
           LS+N  I G+ 
Sbjct: 158 LSAN-SISGAN 167

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           LQ L L  N FTG   +      G+   L  L+L  N F   + P+  + + L +L L  
Sbjct: 271 LQYLSLAENKFTGEIPD---FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
           N+  G      L K++ L+ LDLS N    G L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFN-EFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGN 137
           S NS+   G  V+   L     EL+ L +  N  +G +              L+ L++ +
Sbjct: 159 SANSI--SGANVVGWVLSDGCGELKHLAISGNKISGDV-------DVSRCVNLEFLDVSS 209

Query: 138 NDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
           N+F+  I P+L   ++L  L++  N + G  ++  ++    L+ L++SSN    G +
Sbjct: 210 NNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN-QFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  L L  N+ +G   +    S GSL +L+ L L  N     I   L  + +L TL L +
Sbjct: 420 LVSLHLSFNYLSGTIPS----SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           N + G     GL+   NL  + LS+N      L G  
Sbjct: 476 NDLTGEIPS-GLSNCTNLNWISLSNN-----RLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 9e-12
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ LD+  N F+           G    L+ L++  N  + +    ++T T L  LN+  
Sbjct: 202 LEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
           N   G         LK+L+ L L+ N    G +     
Sbjct: 257 NQFVGP---IPPLPLKSLQYLSLAEN-KFTGEIPDFLS 290

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
            L+ L L  N  TG           +   L  ++L NN     I  ++  L +L  L L 
Sbjct: 467 TLETLILDFNDLTGEIP----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
            NS  G+   + L   ++L  LDL++N   +G++
Sbjct: 523 NNSFSGNIPAE-LGDCRSLIWLDLNTN-LFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 98  PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTL 157
           P   LQ L L  N FTG    +   +  +  +L  L+L  N  +  I   L +L+ L  L
Sbjct: 392 PKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
            L  N +EG    Q L  +K LE L L  N  + G +
Sbjct: 448 KLWLNMLEGE-IPQELMYVKTLETLILDFN-DLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 69  SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR 128
           +     + + + N + ++G+        +        ++    + G        +F +  
Sbjct: 580 NDGMKKECHGAGNLLEFQGIR---SEQLNRLSTRNPCNITSRVYGG----HTSPTFDNNG 632

Query: 129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +  L++  N  +  I   + ++  L  LNL +N I GS     +  L+ L  LDLSSN
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSN 690

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLT 152
            L    + L  LDL  N F G         FGS   L+ L L +N+F+  +    L  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPP----FFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
            L  L+L +N   G   +       +L  LDLSSN    G +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-NTLTSLTTLNLR 160
           L+ L L  N F+G       D+   +R LK+L+L  N+F+  +   L N   SL TL+L 
Sbjct: 320 LESLALSSNNFSGELPM---DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 161 YNSIEGS-RTKQGLAKLKNLEALDLSSNYYIHGSL 194
            N+  G             L+ L L +N    G +
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKI 410

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 102 LQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           +  LD+  N  +G I +       GS+  L +LNLG+ND + +I   +  L  L  L+L 
Sbjct: 634 MMFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
            N ++G   +  ++ L  L  +DLS+N
Sbjct: 689 SNKLDGRIPQA-MSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 102 LQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           L  L+L  N  +G I +       G LR L +L+L +N  +  I   ++ LT LT ++L 
Sbjct: 658 LFILNLGHNDISGSIPD-----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712

Query: 161 YNSIEG 166
            N++ G
Sbjct: 713 NNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 99  FEELQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTL 157
              L  LDL  N F G I       +           +  N        Y+         
Sbjct: 537 CRSLIWLDLNTNLFNGTIPA-----AMFKQSGK----IAANFIAGKRYVYIKNDGMKKEC 587

Query: 158 NLRYNSIEGS-RTKQGLAKLKNLEALDLSSNYY 189
           +   N +E      + L +L      +++S  Y
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.4 bits (207), Expect = 1e-19
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 32/185 (17%)

Query: 7   CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCD-DWVGVKCSATTR-- 63
           C   ++ ALL+IK           +   L SW+       +DCC+  W+GV C   T+  
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 64  RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLP-MNWFTGIYENRAYD 122
           RV  L L        S  ++       +  SL +    L  L +  +N   G        
Sbjct: 51  RVNNLDL--------SGLNLP--KPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP----P 95

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182
           +   L QL  L + + + +  I  +L+ + +L TL+  YN++ G+     ++ L NL  +
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGI 154

Query: 183 DLSSN 187
               N
Sbjct: 155 TFDGN 159

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 102 LQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
            Q++ L  N     +         G  + L  L+L NN     +   L  L  L +LN+ 
Sbjct: 223 TQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +N++ G   + G   L+  +    ++N
Sbjct: 277 FNNLCGEIPQGG--NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEA 181
            +F +L  L  ++L  N    +      +  +   ++L  NS+     K  +   KNL  
Sbjct: 192 PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNG 248

Query: 182 LDLSSN 187
           LDL +N
Sbjct: 249 LDLRNN 254

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              ++ L +     T        +    L  L+ L +   D   + +P L+ LTSLT L+
Sbjct: 65  AHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
           + +++ + S     +  L  + ++DLS N  I
Sbjct: 119 ISHSAHDDSILT-KINTLPKVNSIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  LD+  +       +       +L ++  ++L  N    +I+P L TL  L +LN+++
Sbjct: 114 LTLLDISHSAHD----DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           + +   R   G+     L  L   S 
Sbjct: 169 DGVHDYR---GIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182
           +   +  L  + L N +  D  L  +    ++  L +             ++ L NLE L
Sbjct: 39  TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERL 93

Query: 183 DLSSN 187
            +   
Sbjct: 94  RIMGK 98

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
           + +      LG +   +        + SLT + L   ++       G+    N++ L ++
Sbjct: 21  TFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTIN 74

Query: 186 SN 187
           + 
Sbjct: 75  NI 76

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           L    F  F ELQ LDL       I +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L+SL  L     ++        +  LK L+ L+++ N      L   F
Sbjct: 99  LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYF 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F   E+L+ LD   +    + E   +  F SLR L  L++ +           N L+SL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L +  NS + +       +L+NL  LDLS  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
             +     L  L L  N    +       +F  L  L+ L     +        +  L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L  LN+ +N I+  +  +  + L NLE LDLSSN  I      + 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 5e-12
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
            + LDL  N    +       SF S  +L++L+L   +          +L+ L+TL L  
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNY 188
           N I+        + L +L+ L      
Sbjct: 86  NPIQSL-ALGAFSGLSSLQKLVAVETN 111

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
            +F+    L+ L +  N F   +     D F  LR L  L+L             N+L+S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
           L  LN+ +N+            L +L+ LD S N +I  S +    
Sbjct: 496 LQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
               +F     L  LDL       +    +  +F SL  L++LN+ +N+F          
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQL----SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L SL  L+   N I  S+ ++      +L  L+L+ N
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L+ LDL  N  +         S      LK L+L  N     +      L  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            L+ ++++++          L+NL  LD+S   +   +  G F
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKM----LNLGNNDFNDNILPYLN 149
             F     L+ LDL  N    IY          L Q+ +    L+L  N  N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
               L  L LR N    +  K  +  L  LE   L    +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-NTLT 152
           + F+    LQ L++  N F  +        +  L  L++L+   N    +    L +  +
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 153 SLTTLNLRYNSIEGSRTKQGLAK-LKNLEALDLSSNYYI 190
           SL  LNL  N    +   Q   + +K+   L +      
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN------DNILPY 147
           +       L+   L +  F     N       +L  L  L +            D+I+  
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRN-EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            N LT++++ +L   +IE     +  +     + L+L + 
Sbjct: 278 FNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNC 314

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F      Q L+L    F              L+ LK L   +N            L SL 
Sbjct: 300 FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLE 350

Query: 156 TLNLRYNSIEGS-RTKQGLAKLKNLEALDLSSN 187
            L+L  N +       Q      +L+ LDLS N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 21/122 (17%)

Query: 66  MQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG 125
           + +        +Y  + +         + LF+    +    L       +        F 
Sbjct: 257 LTIEEFRLAYLDYYLDDI---------IDLFNCLTNVSSFSLVSVTIERV------KDFS 301

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
                + L L N  F       L +L  LT  + +  +            L +LE LDLS
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLS 355

Query: 186 SN 187
            N
Sbjct: 356 RN 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           L  + F  + +L  LD+  N  + +      +    L  LK+LNL +N+ +         
Sbjct: 40  LPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            T+LT L+L  NSI+  +      K KNL  LDLS N
Sbjct: 96  CTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN- 149
           ++   F   + L+ L++  N   GI  N     F  L  LK L+L N+  +   L     
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 150 ---TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
                + L  LNL  N I         + L +LE LDL  N  I   L G  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLN-EIGQELTGQEW 426

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           L+   F     L  L L  N    I  N     F   + L  L+L +N  +   L     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 151 LTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSN 187
           L +L  L L  N I+     +  +    +L+ L+LSSN
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F     L+ LDL +N             +  L  +  + L  N +          + SL 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 156 TLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSN 187
            L LR  +++   +       L+NL  LDLS+N
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              +  L+L  N    +       +F    QL  L++G N  +         L  L  LN
Sbjct: 24  PTNITVLNLTHNQLRRLPAA----NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L++N +    + +  A   NL  L L SN  I       F
Sbjct: 80  LQHNELSQL-SDKTFAFCTNLTELHLMSN-SIQKIKNNPF 117

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN--DNILPY 147
            L    +   E +  + L  N +  +  N    SF  +  L+ L L        D+    
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
              L +LT L+L  N+I        L  L+ LE LDL  N 
Sbjct: 476 FQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNN 515

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 22/97 (22%), Positives = 37/97 (38%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +  ++F     L+ L L  ++ +            +   L +LNL  N  +       + 
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L  L+L  N I    T Q    L+N+  + LS N
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           + F     LQRL L       +  + +   F  LR L +L+L NN+  +     L  L  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 154 LTTLNLRYNSIE-------GSRTKQGLAKLKNLEALDLSSN 187
           L  L+L++N++               L  L +L  L+L SN
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 14/115 (12%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN----DFNDNILPYLN 149
             F    +L+   L  N    ++ +    S   L  ++ LNL  +      +   LP ++
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSH----SLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 150 -----TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
                 L  L  LN+  N I G         L NL+ L LS+++    +L    F
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
             +        L  L+L  N F  I      + F  L +LK+++LG N+ N       N 
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEI----PVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             SL +LNL+ N I     K      +NL  LD+  N
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--------DF 140
           +  + S F P   L  LDL  N    I      D    L +L++L+L +N          
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANI----NDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 141 NDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               + +L  L+ L  LNL  N  +     +    L  L+ +DL  N
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  LDL  N    +      DSF  L QL+   L  N+        L+ L ++  LNL+ 
Sbjct: 250 LTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 162 NSIEGSRTKQGL--------AKLKNLEALDLSSN 187
           +  + S +   L          LK LE L++  N
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 5/110 (4%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
             +      E LQ L L  N    +          +   LK L L +N   +      + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSE--ELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 151 LTSLTTLNLRYNSIEGSRTK--QGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           +  L  L L    +  S T+         ++  L LS++  +  +    F
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR--QLKMLNLG 136
           +         L   + L      ++ L L  +  +         +F  L+   L ML+L 
Sbjct: 203 NNVQ--LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN----TTFLGLKWTNLTMLDLS 256

Query: 137 NNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196
            N+ N         L  L    L YN+I+       L  L N+  L+L  + +   S+  
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRS-FTKQSISL 314

Query: 197 NFF 199
              
Sbjct: 315 ASL 317

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
             +  + +     I +     SF  L+ L+ LN+ +ND           L +L  L+L  
Sbjct: 307 FTKQSISLASLPKIDDF----SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 162 NSIEG----SRTKQGLAKLKNLEALDLSSN 187
           +        + T   LA    L  L+L+ N
Sbjct: 363 SFTSLRTLTNETFVSLA-HSPLHILNLTKN 391

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 125 GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL 184
                + +LNL +N             + LT+L++ +N+I      +   KL  L+ L+L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNL 80

Query: 185 SSN 187
             N
Sbjct: 81  QHN 83

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-NTLT 152
            +F    EL+ +DL +N    +        F +   LK LNL  N               
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 153 SLTTLNLRYNSIEGS 167
           +LT L++R+N  + +
Sbjct: 610 NLTELDMRFNPFDCT 624

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
            + N       + +S+          SL      ++ LDL  N  + I            
Sbjct: 7   QNGNRYKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAA----DLAPF 57

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +L++LNL +N   +     L +L++L TL+L  N +      Q L    ++E L  ++N
Sbjct: 58  TKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANN 109

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           +       +   +  +       +       S   +K L+L  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             LNL  N +  +     L  L  L  LDL++N
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTSLTTL 157
            +  + + L  N  T + +       G   +++ L+L  N+ +  N      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           NL+YN I      +G      L+ LDLSSN
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSN 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 +Q LDL +N    +      +   S   L+ LNL  N   D  +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLK 194

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TL+L  N +  +           +  + L +N
Sbjct: 195 TLDLSSNKL--AFMGPEFQSAAGVTWISLRNN 224

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           ++ L    N  + +       S    +  K + L NN             + +  L+L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I+     +  A    LE L+L  N
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
            L    + L+ L+L  N+   +             +LK L+L +N     + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           +T ++LR N +     ++ L   +NLE  DL  N +  G+L   F
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ LDL  N    +        F S   +  ++L NN     I   L    +L   +LR 
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN 197
           N       +   +K + ++ +   +   + G  E  
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEA 181
           +   +  + K+  + ++     +     +  ++  L+L  N +        LA    LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 182 LDLSSN 187
           L+LSSN
Sbjct: 63  LNLSSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
            + N       + +S+          SL      ++ LDL  N  + I            
Sbjct: 7   QNGNRYKIEKVTDSSLK-----QALASLRQSAWNVKELDLSGNPLSQISAA----DLAPF 57

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +L++LNL +N   +     L +L++L TL+L  N +      Q L    ++E L  ++N
Sbjct: 58  TKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANN 109

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           +       +   +  +       +       S   +K L+L  N  +      L   T L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             LNL  N +  +     L  L  L  LDL++N
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTSLTTL 157
            +  + + L  N  T + +       G   +++ L+L  N+ +  N      +  +L  L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           NL+YN I      +G      L+ LDLSSN
Sbjct: 175 NLQYNFIY---DVKGQVVFAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 +Q LDL +N    +      +   S   L+ LNL  N   D  +        L 
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLK 194

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TL+L  N +  +           +  + L +N
Sbjct: 195 TLDLSSNKL--AFMGPEFQSAAGVTWISLRNN 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           ++ L    N  + +       S    +  K + L NN             + +  L+L+ 
Sbjct: 101 IETLHAANNNISRV-------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I+     +  A    LE L+L  N
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN 179

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
            L    + L+ L+L  N+   +             +LK L+L +N     + P   +   
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           +T ++LR N +     ++ L   +NLE  DL  N +  G+L   F
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEA 181
           +   +  + K+  + ++     +     +  ++  L+L  N +        LA    LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLEL 62

Query: 182 LDLSSN 187
           L+LSSN
Sbjct: 63  LNLSSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ LDL  N    +        F S   +  ++L NN     I   L    +L   +LR 
Sbjct: 193 LKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N       +   +K + ++ +   + 
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           +H    L  L L  N            SF  L  L+ L              +  L +L 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
            LN+ +N I   +     + L NL  +DLS NY
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F  F ELQ LDL       I +     ++  L  L  L L  N          + LTSL 
Sbjct: 52  FSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            L      +    +   + +L  L+ L+++ N+     L   F
Sbjct: 108 NLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYF 149

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
           L  N     + S+N        ++  + F   EELQ LD   +    + E     +F SL
Sbjct: 373 LGTNSLRHLDLSFNG------AIIMSANFMGLEELQHLDFQHSTLKRVTEF---SAFLSL 423

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +L  L++   +   +       LTSL TL +  NS + +      A   NL  LDLS  
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
               + +DL  N    +       SF +  +L+ L+L   +         + L  L+ L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           L  N I+   +    + L +LE L      
Sbjct: 87  LTGNPIQSF-SPGSFSGLTSLENLVAVETK 115

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
           +    +F     L  L +  N F     +   + F +   L  L+L             +
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           TL  L  LN+ +N++          +L +L  LD S N 
Sbjct: 495 TLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNR 532

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           ++F     L  LDL       I        F +L +L++LN+ +N+       + N L S
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L+TL+  +N IE S         K+L   +L++N
Sbjct: 523 LSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTLNLR 160
           L+ LDL  N    +       +F  L +L+ L+  ++            +L  L  L++ 
Sbjct: 378 LRHLDLSFNGAIIMSA-----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           Y + +          L +L  L ++ N +   +L   F
Sbjct: 433 YTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 17/120 (14%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
           L      +F  +Y + +       ++  FH    +  + L       +      +     
Sbjct: 258 LCDVTIDEFRLTYTNDFS-----DDIVKFHCLANVSAMSLAGVSIKYL------EDVPKH 306

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            + + L++               L  L +L L  N    S  K     L +L  LDLS N
Sbjct: 307 FKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVA---LPSLSYLDLSRN 360

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 36/164 (21%)

Query: 64  RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSL----FHPFEELQRLDLPMNWFTGIYENR 119
             M L+               W+ + ++   L          L+ L L MN  +  +   
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--- 344

Query: 120 AYDSFGSLRQLKMLNLGNN---------------------DFNDNIL----PYLNTLTSL 154
                 +L  L  L+L  N                     D + N           L  L
Sbjct: 345 ---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
             L+ ++++++          L+ L  LD+S         +G F
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIF 444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF---NDNILPYLNT 150
                   L++L++  N+            F +L  L  ++L  N       N L +L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 151 LT-SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
                 +L++  N I     +    +   L  L L  N +   ++     
Sbjct: 179 NPQVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCL 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           ++  +F     LQ L++  N    +        +  L  L  L+   N    +     + 
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 151 LTSLTTLNLRYNSI 164
             SL   NL  NS+
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKM----LNLGNNDFNDNILPYLN 149
           + F     L  +DL  N+   I  N        LR+       L++  N  +  I     
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVN----DLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
               L  L LR N    +  K  L  L  L    L    +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYD--SFGSLRQLKM--LNLGNNDFNDNILPYLN 149
           +       L    L +  F        ++      L  + +    L   +   + +   +
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L +++ ++L   SI+     + + K    ++L +   
Sbjct: 283 CLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 10/93 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI------LPYLNTLTSLT 155
           L  L L  N+ +            +L  L +  L   +F D           +  L  +T
Sbjct: 206 LHELTLRGNFNSSNIMK---TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 156 TLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSN 187
               R                L N+ A+ L+  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNT 150
             S+F     L  LD+        +       F  L  L++L +  N F +N LP     
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L +LT L+L    +E   +      L +L+ L+++SN
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASN 504

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           L    F  F ELQ LDL       I +     ++ SL  L  L L  N      L   + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L+SL  L     ++  S     +  LK L+ L+++ N      L   F
Sbjct: 99  LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           +     L  L L  N    +    A  +F  L  L+ L     +        +  L +L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            LN+ +N I+  +  +  + L NLE LDLSSN
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           S F   E+L+ LD   +    + E   +  F SLR L  L++ +           N L+S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L +  NS + +       +L+NL  LDLS  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLN 149
           L +  F     LQ+L         +         G L+ LK LN+ +N      LP Y +
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 150 TLTSLTTLNLRYNSIEGSRTK--QGLAKLKNLEA-LDLSSN 187
            LT+L  L+L  N I+       + L ++  L   LDLS N
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F      Q L+L    F              L+ LK L   +N   +        L SL 
Sbjct: 300 FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLE 350

Query: 156 TLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSN 187
            L+L  N +       Q      +L+ LDLS N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKM----LNLGNNDFNDNILPYLN 149
             F     L+ LDL  N    IY          L Q+ +    L+L  N  N  I P   
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
               L  L LR N    +  K  +  L  LE   L    +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
           L      +F  +Y   Y +      + LF+    +    L       +        F   
Sbjct: 254 LCNLTIEEFRLAYLDYYLD----DIIDLFNCLTNVSSFSLVSVTIERV------KDFSYN 303

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              + L L N  F     P L  L SL  L    N    + ++     L +LE LDLS N
Sbjct: 304 FGWQHLELVNCKFGQ--FPTLK-LKSLKRLTFTSNKGGNAFSEVD---LPSLEFLDLSRN 357

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
            +F     L  LDL       +       +F SL  L++LN+ +N          + LTS
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 154 LTTLNLRYNSIEGS 167
           L  + L  N  + S
Sbjct: 520 LQKIWLHTNPWDCS 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 28/109 (25%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +  + F     L  LDL       I+E    D+F S  +L  L L  N         L+ 
Sbjct: 48  IQNTTFSRLINLTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIFMAETALSG 103

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
             +L  L      I        L   K LE+L L SN +I        F
Sbjct: 104 PKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSN-HISSIKLPKGF 150

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL 148
           L L        E L+ LDL  +               +L  L+ LNL  N+         
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCN--LQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
                L  L+L +  ++    +     L  L+ L+LS +  +  S E  F
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLF 445

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
           L        N   +  +      ++ + FH F  LQ LDL     + +           L
Sbjct: 251 LCEMSVESINLQKHYFF-----NISSNTFHCFSGLQELDLTATHLSELP-----SGLVGL 300

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             LK L L  N F +      +   SLT L+++ N+         L  L+NL  LDLS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
               + L+   N    I       +F  L  L  L+L              +   L TL 
Sbjct: 32  PNSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           L  N +     +  L+  K L+ L      
Sbjct: 88  LTANPLIFM-AETALSGPKALKHLFFIQTG 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
            F    +L+ LDL            A   F +L  LK+LNL ++  + +     + L +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 155 TTLNLRYNSIEGSRTKQ--GLAKLKNLEALDLSSNY 188
             LNL+ N       ++   L  L  LE L LS   
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
            +  +     + L+ L       + I          + + L+ L LG+N  +   LP   
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 150 TLTSLTTLNLRYNSIEGSRTK--QGLAKLKNLEALDLSSN 187
               L  L+ + N+I     +    L +  NL  L+L+ N
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGN 189

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
           + +  LF     LQ L+L  N F      +  +S  +L +L++L L   D +        
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +L  +  ++L +N +  S + + L+ LK +  L+L+SN
Sbjct: 498 SLKMMNHVDLSHNRLTSS-SIEALSHLKGIY-LNLASN 533

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
             N   +    +   +       L+ L L     + I +     +F SL+ +  ++L +N
Sbjct: 457 QGNH--FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHN 510

Query: 139 DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               + +  L+ L  +  LNL  N I        L  L     ++L  N
Sbjct: 511 RLTSSSIEALSHLKGIY-LNLASNHISIIL-PSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
              H  + L+ L L  N  + I             +LK+L+  NN  +      +++L  
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKL----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
            T L+L  N  + +  + G       ++L+      +    +G   
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND--NILPYLNTLTSLTTLNL 159
            Q L+        +          +++ L +    + D  D    +       S+ ++NL
Sbjct: 204 FQSLNFGGTQNLLVIFKG--LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           + +      +         L+ LDL++ +
Sbjct: 262 QKHYFFNISSNT-FHCFSGLQELDLTATH 289

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           ++   F   + +  +DL  N  T        ++   L+ +  LNL +N  +  +   L  
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSI----EALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 151 LTSLTTLNLRYNSIEGS 167
           L+   T+NLR N ++ +
Sbjct: 546 LSQQRTINLRQNPLDCT 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 4e-11
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 24/155 (15%)

Query: 33  KILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLN 92
            + P      D + S    +   +K      RV+ L+    T   +              
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-------------- 458

Query: 93  MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152
                    +  LDL  N    +          +LR L++L   +N   +  +  +  L 
Sbjct: 459 ---LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLP 508

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L  L L  N ++ S   Q L     L  L+L  N
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 99  FEELQRLD----LPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           F  L+ +D      ++     +             +++L+L + D     L +L  L  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLV 465

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           T L+L +N +        LA L+ LE L  S N 
Sbjct: 466 THLDLSHNRL--RALPPALAALRCLEVLQASDNA 497

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L+L  N  T I          +L +L  L +G N   D  +  L  LT+L  L L  
Sbjct: 68  LEYLNLNGNQITDI------SPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
           ++I        LA L  + +L+L +N+ +
Sbjct: 120 DNISDI---SPLANLTKMYSLNLGANHNL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           +++      +L+ L++  N  + I          +L QL  L L NN   +  +  +  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T+LTTL L  N I      + LA L  +++ D ++ 
Sbjct: 311 TNLTTLFLSQNHITDI---RPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           +  L+L  N               ++  L  L +  +   D  +  +  LT L +L+L Y
Sbjct: 134 MYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNY 186

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N IE       LA L +L       N
Sbjct: 187 NQIEDI---SPLASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  L++  N  + I      ++   L +LKMLN+G+N  +D  +  LN L+ L +L L  
Sbjct: 245 LTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNY 188
           N +     +  +  L NL  L LS N+
Sbjct: 297 NQLGNEDMEV-IGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  L L  N    I          SL  L       N   D  +  +  +T L +L +  
Sbjct: 179 LYSLSLNYNQIEDI------SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGN 230

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I        LA L  L  L++ +N
Sbjct: 231 NKITDL---SPLANLSQLTWLEIGTN 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 6e-10
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
             E  R  L     T +       +   L  +  L +         +  +  LT+L  LN
Sbjct: 21  LAEGIRAVLQKASVTDV------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  N I        L+ L  L  L + +N
Sbjct: 73  LNGNQITDI---SPLSNLVKLTNLYIGTN 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L L  +  + I          +L ++  LNLG N    ++ P L+ +T L  L +  
Sbjct: 112 LRELYLNEDNISDI------SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTE 164

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           + ++       +A L +L +L L+ N
Sbjct: 165 SKVKDV---TPIANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 11/92 (11%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L      +N  T I          ++ +L  L +GNN   D  L  L  L+ LT
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD--LSPLANLSQLT 246

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L +  N I        +  L  L+ L++ SN
Sbjct: 247 WLEIGTNQISDIN---AVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
              L         I           L +     L      D  +     L S+T L +  
Sbjct: 2   AATLATLPAPINQI------FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAG 53

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
             +    + QG+  L NLE L+L+ N
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGN 76

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           ++S+ +   +L  L L  N           +  G L  L  L L  N   D  +  L +L
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHITD--IRPLASL 332

Query: 152 TSLTTLNLRYNSIE 165
           + + + +     I+
Sbjct: 333 SKMDSADFANQVIK 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 102 LQRLDLPMNWFTGIYENRAY---DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
           +  +D   N    +          +      +  +NL NN  +       +T + L+++N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 159 LRYNSIEG------SRTKQGLAKLKNLEALDLSSN 187
           L  N +            +       L ++DL  N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 11/93 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-------NILPYLNTLTSL 154
           +  ++L  N  +        + F +   L  +NL  N   +       +          L
Sbjct: 435 VSSINLSNNQISKF----PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T+++LR+N +           L  L  +DLS N
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNL 159
           E++Q + +  N            S   +++L ML    N      LP   +   L +LNL
Sbjct: 305 EKIQIIYIGYNNLKTF---PVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNL 360

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            YN I            + +E L  + N
Sbjct: 361 AYNQITEIP-ANFCGFTEQVENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN-------DNILP 146
           +     E+++ L    N    I          S+  +  ++   N+         D + P
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNI---FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                 +++++NL  N I     K+  +    L +++L  N
Sbjct: 428 TPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 8/74 (10%)

Query: 122 DSFGSLRQLKMLNLGNNDF--------NDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL 173
               +L +++++N+  N          +   L        +  + + YN+++    +  L
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 174 AKLKNLEALDLSSN 187
            K+K L  L+   N
Sbjct: 327 QKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAY---DSFGSLRQLKMLNLGNNDFNDNILP-YLN 149
            LF     L  ++L  N  T I +N      ++F +   L  ++L  N            
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TL  L  ++L YNS               L+   + + 
Sbjct: 511 TLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 10/109 (9%), Positives = 31/109 (28%), Gaps = 11/109 (10%)

Query: 98  PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTL 157
             E  +  +          +      + +L+ L  + + N      +  +L  L  +  +
Sbjct: 223 ICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 158 NLRYNSIEGSRTKQG-------LAKLKNLEALDLSSNYYIHGSLEGNFF 199
           N+  N        +            + ++ + +  N      +E +  
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  +DL  N  T + ++       +L  L  ++L  N F+          ++L    +R 
Sbjct: 490 LTSIDLRFNKLTKLSDDF---RATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRN 545

Query: 162 NSIEGSRTKQG-----LAKLKNLEALDLSSN 187
                           +    +L  L + SN
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL--NTLTSLTTLN 158
           EL+ L L  +               +    +        +    + Y      + L    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +  +  + S  K+          +   SN
Sbjct: 166 INSDPQQKS-IKKSSRITLKDTQIGQLSN 193

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 19/94 (20%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDN----ILPY-LNTLTSLT 155
           L  +DL  N F+            +   LK   + N  D   N      P  +    SLT
Sbjct: 515 LVGIDLSYNSFSKFPT-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 156 TLNLRYNSIEGSRTKQGLAK--LKNLEALDLSSN 187
            L +  N I      + + +    N+  LD+  N
Sbjct: 570 QLQIGSNDI------RKVNEKITPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN---L 179
           S  S  ++  L+L     +  +   +  LT L  L L  +  + +    G   +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 180 EALDLSSNYYIHGSLEG 196
           E       +Y    ++ 
Sbjct: 136 EQKQKMRMHYQKTFVDY 152

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 25/111 (22%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF-------------------N 141
           +  ++    N  T + +     +   L +L+   +GN+ F                    
Sbjct: 184 KDTQIGQLSNNITFVSK-----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 142 DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG 192
                  + L  LT + +             L  L  ++ ++++ N  I G
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY----LNTLTSLTTL 157
           +  L L     +G       D+ G L +L++L LG++    N   +    ++   S    
Sbjct: 83  VTGLSLEGFGASGR----VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG 196
                  + +     +      +  DL  +       + 
Sbjct: 139 QKMRMHYQKTF----VDYDPREDFSDLIKDCINSDPQQK 173

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LN 149
           +  S F   E+LQ L+L   +     +    ++F +L  L++L+LG++     + P    
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIY-FLHPDAFQ 94

Query: 150 TLTSLTTLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSNYYIHGSLEGNF 198
            L  L  L L +  +  +  K G    LK L  LDLS N      L  +F
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-- 146
           L ++   F     L+ LDL  +    ++     D+F  L  L  L L     +D +L   
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           Y   L +LT L+L  N I          KL +L+++D SSN
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLT 152
            +       +RL L  N+   +       SF  L QL++L LG+      I       L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTA----SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
           +L  L+L  + I           L +L  L L         L+  +F
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 66  MQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR-AYDSF 124
             L + +      + N                    L++L L  N     +E    +D F
Sbjct: 421 FLLRVPHLQILILNQNRFSS----CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 125 GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL 184
             L  L++L L +N  N       + LT+L  L+L  N +             NLE LD+
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL---TVLSHNDLPANLEILDI 533

Query: 185 SSN 187
           S N
Sbjct: 534 SRN 536

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 43/147 (29%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN------------ 138
           +    F+  + LQ L+L  N    +Y +    +F  L ++  ++L  N            
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 139 -------DFNDNILPYLNTLTSLTTLNLRYNSI--------------------EGSRTKQ 171
                  D  DN L  ++ + S+  + L  N +                    E      
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 172 GLAKLKNLEALDLSSNYYIHGSLEGNF 198
            L ++ +L+ L L+ N +   S +   
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTP 447

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF---NDNIL 145
            VL    F   + L RLDL  N    +Y +    SFG L  LK ++  +N      ++ L
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 146 PYLNTLTSLTTLNLRYNSIE-----GSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
             L    +L+  +L  NS+               +   LE LD+S N      + GNF 
Sbjct: 169 EPL-QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFS 225

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           ++ LDL   +   +        F +L+ LK+LNL  N  N         L +L  LNL Y
Sbjct: 268 VRHLDLSHGFVFSLNSR----VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N +           L  +  +DL  N
Sbjct: 324 NLLG-ELYSSNFYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
             N +       L   +F     LQ L L  N+   +        F  L  L+ L+L +N
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP----GVFSHLTALRGLSLNSN 514

Query: 139 DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
                 L + +   +L  L++  N +             +L  LD++ N +I
Sbjct: 515 RLTV--LSHNDLPANLEILDISRNQL----LAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-NTLTSLTTLNLR 160
              + L  N    +           +  L++L L  N F+        +   SL  L L 
Sbjct: 403 ANLIHLSENRLENL---DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 161 YNSIEGSR----TKQGLAKLKNLEALDLSSNY 188
            N ++ +            L +L+ L L+ NY
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDF-NDNILPYLNT 150
            ++  H    +  + L  N    + +              +++L  N   N +IL +L  
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKI--------NLTANLIHLSENRLENLDILYFLLR 424

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           +  L  L L  N        Q  ++  +LE L L  N 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 64  RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDS 123
            ++ +S N    +       +   +             +       +      +N    +
Sbjct: 207 EILDVSGN---GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN----T 259

Query: 124 FGSLRQ--LKMLNLGNNDFNDNILPY-LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180
           F  L +  ++ L+L +     ++      TL  L  LNL YN I     +     L NL+
Sbjct: 260 FAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQ 317

Query: 181 ALDLSSN 187
            L+LS N
Sbjct: 318 VLNLSYN 324

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 91  LNMSLFHPFEELQRLDLP-MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
           +    F+    L+RLDL  +   + I E     +F  L  L+ LNL   +  +  +P L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEG----AFEGLSNLRYLNLAMCNLRE--IPNLT 204

Query: 150 TLTSLTTLNLRYNSIEGSRTKQG-LAKLKNLEALDLSSN 187
            L  L  L+L  N +  S  + G    L +L+ L +  +
Sbjct: 205 PLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQS 241

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 29/113 (25%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-------------------D 139
               + L+L  N    I  N    SF  LR L++L L  N                   +
Sbjct: 63  STNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 140 FNDNILPYLNT-----LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             DN L  +       L+ L  L LR N IE S       ++ +L  LDL   
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSL 154
             P  +L  LDL  N  + I       SF  L  L+ L +  +     I     + L SL
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             +NL +N++           L +LE + L  N
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 4/108 (3%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +          LQ L L  +    I      D+F SL  L+ L+L +N  +     +   
Sbjct: 41  IGHGDLRACANLQVLILKSSRINTIEG----DAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L+SL  LNL  N  +          L NL+ L + +          +F
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--- 147
              +++   E+++R+ +  +    +  +        L+ L+ L+L  N   +  L     
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 148 LNTLTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSN 187
                SL TL L  N +    +T + L  LKNL +LD+S N
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           N +    +  LQ L L  N    +   +  +   +L+ L  L++  N F+  +       
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSM--QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
             +  LNL    I            + LE LD+S+N 
Sbjct: 410 EKMRFLNLSSTGI----RVVKTCIPQTLEVLDVSNNN 442

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLN 149
           +    F+    L+ LDL  N  + +    +   FG L  LK LNL  N +    +     
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSL----SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
            LT+L TL +          +   A L +L  L++ +  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
            +    F     L  L++               S  S+R +  L L  ++    +  + +
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 150 TLTSLTTLNLRYNSIEG--SRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            L+S+  L LR  ++                ++ L    +     S     
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 94  SLFHPFEELQRLDL-PMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152
           SLF     LQ L +  +  F+ I        F  L  L  L +      +     L ++ 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
            +  L L  +       +     L ++  L+L    
Sbjct: 173 DIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
            + L+ LD+  N                L +L+ L +  N      LP  +    L  + 
Sbjct: 430 PQTLEVLDVSNNNLDSFSLF--------LPRLQELYISRNKLKT--LPDASLFPVLLVMK 479

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +  N ++ S       +L +L+ + L +N
Sbjct: 480 ISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L +++   N  T I          +L +L  + + NN   D  +  L  LT+LT L L  
Sbjct: 70  LTQINFSNNQLTDI------TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFN 121

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I        L  L NL  L+LSSN
Sbjct: 122 NQITDI---DPLKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L    N  + I         G L  L  L+L  N   D  +  L +LT+LT L+L  
Sbjct: 201 LESLIATNNQISDI------TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 252

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I        L+ L  L  L L +N
Sbjct: 253 NQISNL---APLSGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
             E  +  L     T         S   L Q+  L           +  +  L +LT +N
Sbjct: 23  LAEKMKTVLGKTNVTDT------VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              N +        L  L  L  + +++N
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNN 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
            L  L+L  N    I          +L+ L  L L  N+ +D  +  +++LT L  L   
Sbjct: 288 ALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFY 339

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
            N +        LA L N+  L    N
Sbjct: 340 NNKVSDV---SSLANLTNINWLSAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 6e-09
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  LDL  N  + +           L +L  L LG N  ++  +  L  LT+LT L L  
Sbjct: 245 LTDLDLANNQISNL------APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 296

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N +E       ++ LKNL  L L  N
Sbjct: 297 NQLEDI---SPISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  + +  N    I          +L  L  L L NN   D  +  L  LT+L  L L  
Sbjct: 92  LVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSS 143

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N+I        L+ L +L+ L   + 
Sbjct: 144 NTISDI---SALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L RL+L  N  + I       +   L  L+ L+ GN   +   L  L  LT+L  L++  
Sbjct: 136 LNRLELSSNTISDI------SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISS 186

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N +        LAKL NLE+L  ++N
Sbjct: 187 NKV---SDISVLAKLTNLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEA 181
               +L  L+ L++ +N  +D  +  L  LT+L +L    N I        L  L NL+ 
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI---TPLGILTNLDE 225

Query: 182 LDLSSN 187
           L L+ N
Sbjct: 226 LSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182
           +  +L +     LG  +  D        L  +TTL      I+   +  G+  L NL  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 183 DLSSN 187
           + S+N
Sbjct: 74  NFSNN 78

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           ++S       +  L    N  + +          +L ++  L L +  + +     +N  
Sbjct: 345 DVSSLANLTNINWLSAGHNQISDL------TPLANLTRITQLGLNDQAWTNAP---VNYK 395

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +++  N   N          ++   +    D++ N
Sbjct: 396 ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN 431

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNL 159
           L  LD   N    +      ++FG+  +L  L L  N   +  +P         +  L  
Sbjct: 575 LGLLDCVHNKVRHL------EAFGTNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGF 626

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +N ++          +  + ++D S N
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND---------NILP 146
           +   ++L  ++L              D    L +L+ LN+  N              +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             +T   +    + YN++E       L K+  L  LD   N
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 12/104 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
             +  +   + +  +          E     S+ +L+ L  + L N      +  +L  L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 152 TSLTTLNLRYNSIEG--------SRTKQGLAKLKNLEALDLSSN 187
             L +LN+  N            +R          ++   +  N
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-------NILPYLNTLTSL 154
              + L  N             F +   +  + L NN                      L
Sbjct: 675 ASTVTLSYNEIQKFPTE----LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TT++LR+N +           L  L  +D+S N
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 102 LQRLDLPMNWFTGIYE-----NRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTSLT 155
           LQ L++  N      +      R  D   +  ++++  +G N+  +      L  +  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L+  +N +              L  L L  N
Sbjct: 577 LLDCVHNKVRHLEA---FGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAY---DSFGSLRQLKMLNLGNNDFNDNILP---Y 147
            LF     +  + L  N  T I EN       ++ +   L  ++L  N      L     
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFR 748

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG 192
             TL  L+ +++ YN    S           L+A  +       G
Sbjct: 749 ATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN---DFNDNILPYLNT 150
                 ++++ L    N    I       +  S+  +  ++   N       NI   ++ 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYI---PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 151 --LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               + +T+ L YN I+   T+   A    +  + LS+N
Sbjct: 670 YKGINASTVTLSYNEIQKFPTEL-FATGSPISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 9e-08
 Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 7/93 (7%)

Query: 102 LQRLDLPMNWFTGIYENR-AYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           +  +D   N       N               + L  N+          T + ++T+ L 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 161 YNSIE------GSRTKQGLAKLKNLEALDLSSN 187
            N +                    L  +DL  N
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           +  L L      G       D+ G L +LK+L+ G +    +   + +   +      R 
Sbjct: 325 VTGLSLAGFGAKGR----VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYY 189
           + I     K  L   + L   DL  +  
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 22/120 (18%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAY--DSFGSLRQLKMLNLGNN-------- 138
            +       P ++  R+ L       +     +   +   L +L+++   N+        
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 139 -----------DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                         +N     + L  LT + L             L  L  L++L+++ N
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACN 525

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 15/99 (15%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDN----ILPY-LNTLTSLT 155
           L  +D+  N F+            +  QLK   + +  D   N      P  + T  SL 
Sbjct: 755 LSNMDVSYNCFSSFPT-----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
            L +  N I     K        L  LD++ N  I   +
Sbjct: 810 QLQIGSNDIRKVDEK----LTPQLYILDIADNPNISIDV 844

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 10  TERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCD--DWVGVKCSATTRRVMQ 67
            +  AL  I       +   Y   I  +    +     +     D  GV      R V  
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGR-VTG 327

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG------------- 114
           LSL        +   V                 EL+ L    +  T              
Sbjct: 328 LSLAG----FGAKGRVPDA---------IGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 115 --------IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG 166
                   I  +         ++L + +L  +  N N  P +  +   + ++L+   I  
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGN 432

Query: 167 SRTK-----QGLAKLKNLEALDLSSN 187
              +     + + +L  L+ +  +++
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANS 458

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 3/103 (2%)

Query: 88  VLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN---DNI 144
            L  +      F  L  LDL  N   G     +         L++L L N          
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 145 LPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                    L  L+L +NS+  +           L +L+LS  
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           +L     +LQ LDL  N            S     QL  LNL         +P       
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLKQ--VPK-GLPAK 275

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191
           L+ L+L YN +          +L  +  L L  N ++ 
Sbjct: 276 LSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 10/103 (9%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI----LPYLNTLTSLTTL 157
           L+ L +                      L  L+L +N                  +L  L
Sbjct: 151 LKVLSIAQAHSLNFSCE----QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 158 NLRYNSIE--GSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            LR   +E          A    L+ LDLS N     +   + 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL 127
           L ++   +       V       L   L     +L  L+L    +       A       
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPL---LEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG---LAKLKNLEALDL 184
             LK+L++      +     +    +L+TL+L  N   G R         K   L+ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 185 SSN 187
            + 
Sbjct: 209 RNA 211

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.3 bits (136), Expect = 9e-10
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 94  SLFHPFEELQRLDLP-MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT 152
             F+    L RLDL  +     I    +  +F  L  LK LNLG  +  D  +P L  L 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L  L +  N             L +L+ L + ++
Sbjct: 219 GLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS 252

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTL 157
               + L+L  N    I  +    +F  L  L++L LG N     I     N L SL TL
Sbjct: 74  PSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTL 128

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L  N +           L  L  L L +N
Sbjct: 129 ELFDNWLT-VIPSGAFEYLSKLRELWLRNN 157

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSL 154
             P   L+ L++  N F  I       SF  L  LK L + N+     I     + L SL
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQV-SLIERNAFDGLASL 268

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             LNL +N++  S        L+ L  L L  N
Sbjct: 269 VELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           +++      ++  L+L  N    +       +   L+ +K L+L +    D  +  L  L
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD--VTPLAGL 128

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           ++L  L L  N I        LA L NL+ L + + 
Sbjct: 129 SNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
           V +       + +  L       T I      +    L  L  L L +N   D  L  L 
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITD--LAPLK 82

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            LT +T L L  N +   +    +A L++++ LDL+S 
Sbjct: 83  NLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTST 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           N+S     + ++ LDL     T +           L  L++L L  N   +  +  L  L
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITN--ISPLAGL 150

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T+L  L++    +        LA L  L  L    N
Sbjct: 151 TNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           LQ L +     + +          +L +L  L   +N  +D  +  L +L +L  ++L+ 
Sbjct: 153 LQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I        LA   NL  + L++ 
Sbjct: 205 NQIS---DVSPLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
           +L     +  G ++  D        L  +TTL+     +    T +G+  L NL  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 186 SN 187
            N
Sbjct: 72  DN 73

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F   E+L+ LD   +    + E      F SLR L  L++ +      +      N L+S
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHTHTR--VAFNGIFNGLSS 151

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L +  NS + +       +L+NL  LDLS  
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--YLNTLTSLTT 156
                RL+L  N    +        F  L QL  L+L +N  +            TSL  
Sbjct: 27  PSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82

Query: 157 LNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L+L +N +    +      L+ LE LD   +
Sbjct: 83  LDLSFNGVITMSS--NFLGLEQLEHLDFQHS 111

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
           S N + ++G              L+ LDL  N    +  N     F  L QL+ L+  ++
Sbjct: 60  SSNGLSFKG---CCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHS 111

Query: 139 DFNDNILPYLNT---LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLE 195
           +     +   +    L +L  L++ +              L +LE L ++ N +    L 
Sbjct: 112 NLK--QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 196 GNF 198
             F
Sbjct: 169 DIF 171

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 6/99 (6%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-L 148
           V    +F+    L+ L +  N F    EN   D F  LR L  L+L      + + P   
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAF 195

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           N+L+SL  LN+ +N+   S        L +L+ LD S N
Sbjct: 196 NSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTS 153
           +F     L  LDL       +       +F SL  L++LN+ +N+F  ++  +    L S
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNS 224

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L+   N I  S+ ++      +L  L+L+ N
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           + +    +  L  +DL  N    I     Y  F  +++L+ L + NN     +  Y   +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 300

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +L  L+L +N +     ++   +   LE L L  N
Sbjct: 301 PTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHN 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 14/101 (13%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN---DFNDNILP 146
            L   +F     L  L L  N  + +        F +  +L  L++ NN      D+   
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDT-- 166

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                TSL  L L  N +    T   L+ + +L   ++S N
Sbjct: 167 -FQATTSLQNLQLSSNRL----THVDLSLIPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
            +S       ++ LD   N    +             +L +L L +N+  D    +L   
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 253

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             L  ++L YN +E         K++ LE L +S+N
Sbjct: 254 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 14/104 (13%)

Query: 91  LNMSLFHPFEE-----LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL 145
               ++  FE+      + +    +    +          S RQ+++LNL +    +  +
Sbjct: 37  QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEE--I 90

Query: 146 PY--LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                    ++  L + +N+I           +  L  L L  N
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 24/113 (21%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN------------ 138
           L   +FH   +L  L +  N    I ++    +F +   L+ L L +N            
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTHVDLSLIPS 193

Query: 139 ----DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               + + N+L  L    ++  L+  +NSI              L  L L  N
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 26/113 (23%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN------------ 138
           +    F     LQ L L  N  T +           +  L   N+  N            
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVE 214

Query: 139 --DFNDNILPYL--NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             D + N +  +       LT L L++N++        L     L  +DLS N
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYN 264

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
             P   L+ LDL  N    +  N          +L+ L L +N      L  L+T  +L 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIVT--LK-LSTHHTLK 348

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L L +N  + +  +     +      D   +
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-- 147
           ++ + +F     L +LD+  N    + +      F  L  LK L +G+ND     + +  
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVY--ISHRA 147

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            + L SL  L L   ++  S   + L+ L  L  L L   
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +          L  L L       I +     SF  L +LK+L + +  + D + P    
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRD----YSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             +LT+L++ + ++  +     +  L  L  L+LS N
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-- 147
            LN   F  F  L+ L+L  N  + +       +F +L  L+ L L +N      +P   
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAV----EPGAFNNLFNLRTLGLRSNRLKL--IPLGV 99

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              L++LT L++  N I           L NL++L++  N
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN 138

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTS 153
                  L+ L+L  N  + I  +        L +L+ + L        + PY    L  
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGS----MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNY 297

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  LN+  N +  +  +     + NLE L L SN
Sbjct: 298 LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTLNLR 160
           L  L +     T +     Y +   L  L+ LNL  N     I    L+ L  L  + L 
Sbjct: 226 LTSLSITHCNLTAV----PYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLV 280

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
              +           L  L  L++S N
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGN 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F   + L  L L  N  + I+E     +F  LR+L+ L +  N   +  +P  N  +SL 
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLVE--IP-PNLPSSLV 126

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
            L +  N I     K   + L+N+  +++  N   +   E   F
Sbjct: 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 12/92 (13%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN---DFNDNILPYLNTLTSLT 155
            E L  L L  N    I             +L  L LG+N      +  L   + L +L 
Sbjct: 192 PETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSL---SFLPTLR 244

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L+L  N +  SR   GL  LK L+ + L +N
Sbjct: 245 ELHLDNNKL--SRVPAGLPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 27/111 (24%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-------------------- 138
              L  L +  N    + +      F  LR +  + +G N                    
Sbjct: 122 PSSLVELRIHDNRIRKVPKG----VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177

Query: 139 DFNDNILPYL--NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             ++  L  +  +   +L  L+L +N I+ +   + L +   L  L L  N
Sbjct: 178 RISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
              + +L RL L  N    I       S   L  L+ L+L NN     +   L  L  L 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENG----SLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQ 267

Query: 156 TLNLRYNSIE--GSRTKQGL---AKLKNLEALDLSSNYYIHGSLEGNFF 199
            + L  N+I   G      +    K      + L +N   +  ++   F
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND------NILPYLN 149
                 L+ L L  N  + +           L+ L+++ L  N+           + +  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG-----LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGL-AKLKNLEALDLSSN 187
                  ++L  N +     +      + +  A+   + 
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 89  LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-- 146
           LV+  + F     L  L L  N F  +       +F  L  L++L L   + +  +L   
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLSGN 123

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +   LTSL  L LR N+I+  +       ++    LDL+ N
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-NTLTSLTTLNLR 160
           +  +DL +N    + E     SF  L+ L+ L +        I       L+SL  L L 
Sbjct: 32  VNYVDLSLNSIAELNET----SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
           YN             L NLE L L+        L GNFF
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F     L +L+L  N+   I        F +L +L++L+L  N      L       L +
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIR--ALGDQSFLGLPN 372

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L L  N ++ S       +L +L+ + L +N
Sbjct: 373 LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNL 159
           ++  DL  +    + ++     F     L+ L L  N+ N   +       LT L  LNL
Sbjct: 277 VKTCDLSKSKIFALLKS----VFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNL 330

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             N + GS   +    L  LE LDLS N
Sbjct: 331 SQNFL-GSIDSRMFENLDKLEVLDLSYN 357

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           L   F  L+ L L       +       +   L +LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T LNL  N ++   T + L KL+ L++LDL + 
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTSL 154
                +L++L+L  N   G  +         L  L  LNL  N   D + L  L  L  L
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 155 TTLNLRYNSI---EGSRTKQGLAKLKNLEALD 183
            +L+L    +      R       L  L  LD
Sbjct: 123 KSLDLFNCEVTNLNDYRESV-FKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 109 MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSR 168
           M+    I+      +  ++R+L + N  +ND    I        +L  L+L    +    
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSND--GKIEGLTAEFVNLEFLSLINVGL---I 62

Query: 169 TKQGLAKLKNLEALDLSSN 187
           +   L KL  L+ L+LS N
Sbjct: 63  SVSNLPKLPKLKKLELSEN 81

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           ++  F  +   +  ++    +           +     L+  NN   D +      LT L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMV----HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 155 TTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            TL L+ N ++  S+  +   ++K+L+ LD+S N   +   +G+ 
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 66  MQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG 125
           +    +     N++ +        +++M           LD   N  T       +++ G
Sbjct: 295 IYEIFSNMNIKNFTVSGTR-----MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCG 345

Query: 126 SLRQLKMLNLGNNDFN--DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALD 183
            L +L+ L L  N       I      + SL  L++  NS+     K   +  K+L +L+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405

Query: 184 LSSN 187
           +SSN
Sbjct: 406 MSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 7/98 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           L  S      +L+ L +  N    +        F   ++L+ L+L +N      +   + 
Sbjct: 36  LWTSDILSLSKLRILIISHNRIQYLDI----SVFKFNQELEYLDLSHNKLVK--IS-CHP 88

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
             +L  L+L +N+ +     +    +  L+ L LS+ +
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLN 149
           L++S+F   +EL+ LDL  N    I       S      LK L+L  N F+   I     
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
            ++ L  L L    +E   +   +A L   + L +    Y         
Sbjct: 113 NMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 25/115 (21%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT--- 150
            +    + LQ+LD+  N  +              + L  LN+ +N   D I   L     
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYD---EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 151 ------------------LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                             L +L  LN+  N ++ S       +L +L+ + L +N
Sbjct: 425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLTSL 154
                EL+ L L MN    +  ++  +    ++ L+ L++  N  + +      +   SL
Sbjct: 344 CGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +LN+  N +  +  +        ++ LDL SN
Sbjct: 402 LSLNMSSNILTDTIFRCL---PPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 68  LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYD-SFGS 126
            +    +    +     W   + +   ++H    +    +      G  + R +D S  S
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHT--TVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186
           L+ L +  + ++ F           +++   N   +           +K+     LD S+
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSN 333

Query: 187 N 187
           N
Sbjct: 334 N 334

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
            HP   L+ LDL  N F  +   +    FG++ QLK L L       +    +  +  L 
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKE---FGNMSQLKFLGLSTTHLEKS---SVLPIAHLN 139

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL 194
              +     E    K+    L++     L   +  +   
Sbjct: 140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +    F   + L  L L  N  + I       +F  L +L+ L L  N   +  LP    
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLKE--LP-EKM 119

Query: 151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
             +L  L +  N I     K     L  +  ++L +N      +E   F
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L +L L  N  + +       S  +   L+ L+L NN     +   L     + 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL-VKVPGGLADHKYIQ 266

Query: 156 TLNLRYNSIE-----GSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
            + L  N+I               K  +   + L SN   +  ++ + F
Sbjct: 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTT 156
            + LQ L +  N  T + ++     F  L Q+ ++ LG N    + +       +  L+ 
Sbjct: 120 PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 157 LNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           + +   +I  +   QGL    +L  L L  N
Sbjct: 176 IRIADTNI--TTIPQGL--PPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLTSL 154
           F   ++L  + +     T I         G    L  L+L  N     +    L  L +L
Sbjct: 167 FQGMKKLSYIRIADTNITTI-------PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNL 218

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             L L +NSI  +     LA   +L  L L++N
Sbjct: 219 AKLGLSFNSIS-AVDNGSLANTPHLRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND------NILPYLN 149
                 L+ L L  N    +            + ++++ L NN+ +           Y  
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGG-----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGL-AKLKNLEALDLSSN 187
              S + ++L  N ++    +      +    A+ L + 
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              + ++    +    +           L  +  L L  N   D  +  L  L +L  L 
Sbjct: 42  LNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLF 93

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  N I   +    L  LK L++L L  N
Sbjct: 94  LDENKI---KDLSSLKDLKKLKSLSLEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
           F E  + +L     T         +   L  +  +   N+D     +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  N +      + L  LKNL  L L  N
Sbjct: 72  LNGNKL---TDIKPLTNLKNLGWLFLDEN 97

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           ++        + +L L  N  T I          +L+ L  L L  N   D  L  L  L
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDI------KPLTNLKNLGWLFLDENKIKD--LSSLKDL 108

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             L +L+L +N I       GL  L  LE+L L +N
Sbjct: 109 KKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           +++      +L+ L L  N  T I           L +L  L+L +N  +D  +  L  L
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISD--IVPLAGL 174

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T L  L L  N I      + LA LKNL+ L+L S 
Sbjct: 175 TKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L L  N  + I      +    L QL+ L LGNN   D  +  L+ LT L TL+L  
Sbjct: 111 LKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLED 162

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I        LA L  L+ L LS N
Sbjct: 163 NQIS---DIVPLAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L  L L  N  + I           L +L+ L L  N  +D  L  L  L +L  L L  
Sbjct: 155 LDTLSLEDNQISDI------VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 206

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIH 191
                ++     + L     +  +    + 
Sbjct: 207 QECL-NKPINHQSNLVVPNTVKNTDGSLVT 235

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           ++      + L  L L  N    +       S   L++LK L+L +N  +D  +  L  L
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDL------SSLKDLKKLKSLSLEHNGISD--INGLVHL 133

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             L +L L  N I        L++L  L+ L L  N
Sbjct: 134 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
           F E  + +L     T         +   L  +  +   N+D     +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSVTDA------VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  N +      + LA LKNL  L L  N
Sbjct: 75  LNGNKL---TDIKPLANLKNLGWLFLDEN 100

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           +L+ L L  N  + I      +    L QL+ L LGNN   D  +  L+ LT L TL+L 
Sbjct: 113 KLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
            N I        LA L  L+ L LS N
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
           +  +    NL      D      N L S+  +    + I+   + QG+  L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 186 SN 187
            N
Sbjct: 77  GN 78

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--YL 148
           L  +L   F +++ L+L       I       +F     ++ L +G N      LP    
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRY--LPPHVF 113

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             +  LT L L  N +  S  +        L  L +S+N
Sbjct: 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--L 148
           ++   F     +Q+L +  N    +  +     F ++  L +L L  ND +   LP    
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSS--LPRGIF 137

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +    LTTL++  N++E            +L+ L LSSN
Sbjct: 138 HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-- 147
            L   +F     L  L L  N  + +        F +  +L  L++ NN+     +    
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSL----PRGIFHNTPKLTTLSMSNNNLER--IEDDT 160

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               TSL  L L  N +    T   L+ + +L   ++S N
Sbjct: 161 FQATTSLQNLQLSSNRL----THVDLSLIPSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
            +S       ++ LD   N    +             +L +L L +N+  D    +L   
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVV-------RGPVNVELTILKLQHNNLTD--TAWLLNY 247

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             L  ++L YN +E         K++ LE L +S+N
Sbjct: 248 PGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 24/113 (21%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN------------ 138
           L   +FH   +L  L +  N    I +    D+F +   L+ L L +N            
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLSLIPS 187

Query: 139 ----DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               + + N+L  L    ++  L+  +NSI              L  L L  N
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 26/113 (23%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN------------ 138
           +    F     LQ L L  N  T +           +  L   N+  N            
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLLSTLAIPIAVE 208

Query: 139 --DFNDNILPYL--NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             D + N +  +       LT L L++N++        L     L  +DLS N
Sbjct: 209 ELDASHNSINVVRGPVNVELTILKLQHNNL---TDTAWLLNYPGLVEVDLSYN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
             F   + L+RL +  N    +           +  LK+L+L +N    ++         
Sbjct: 266 HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNHL-LHVERNQPQFDR 319

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L L +NSI        L+    L+ L LS N
Sbjct: 320 LENLYLDHNSI----VTLKLSTHHTLKNLTLSHN 349

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
             P   L+ LDL  N    +  N          +L+ L L +N      L  L+T  +L 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIVT--LK-LSTHHTLK 342

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDL 184
            L L +N  + +  +     +      D 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLE 180
              +L   K++   N+      LP   L++   +  LNL    IE        A    ++
Sbjct: 40  EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQ 96

Query: 181 ALDLSSN 187
            L +  N
Sbjct: 97  KLYMGFN 103

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
                + +L     T +       S   L  ++  N  N++     L  +   T+L  L+
Sbjct: 18  LANAVKQNLGKQSVTDL------VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L +N I        L  L  LE L ++ N
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRN 95

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L RL L  N           DS   L+ L++L++ NN      +  L  L+ L  L+L  
Sbjct: 108 LSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHG 159

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N I       GL +LK +  +DL+  
Sbjct: 160 NEIT---NTGGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L +  N    +       +      L  L L NN+  D     L  L +L  L++R 
Sbjct: 87  LEELSVNRNRLKNL-------NGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRN 137

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N ++   +   L  L  LE LDL  N
Sbjct: 138 NKLK---SIVMLGFLSKLEVLDLHGN 160

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
            L      NLG     D  L     L+ +   N   ++I   ++  G+    NL+ L LS
Sbjct: 17  GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71

Query: 186 SN 187
            N
Sbjct: 72  HN 73

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 26/107 (24%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              +Q  +   +    +              LK L+L +N  +D  L  L  LT L  L+
Sbjct: 40  LSGVQNFNGDNSNIQSL------AGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELS 91

Query: 159 LRYN---SIEGSRTK---------------QGLAKLKNLEALDLSSN 187
           +  N   ++ G  +                  L  LKNLE L + +N
Sbjct: 92  VNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
              L   FEEL+ L       T I       +   L +LK L L +N  +  +       
Sbjct: 34  LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +LT LNL  N I+   T + L KL+NL++LDL + 
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 93  MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTL 151
           ++      +L++L+L  N  +G  E            L  LNL  N   D + +  L  L
Sbjct: 57  IANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112

Query: 152 TSLTTLNLRYN---SIEGSRTKQGLAKLKNLEALD 183
            +L +L+L      ++   R       L  L  LD
Sbjct: 113 ENLKSLDLFNCEVTNLNDYRENV-FKLLPQLTYLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSL 154
           L    ++   +D   N    +      D F  LR+LK L + NN            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 155 TTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T L L  NS+        LA LK+L  L +  N
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTSL 154
           F     L+ L +  N    I E        +L  L  L L NN   +   L  L +L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 155 TTLNLRYN---SIEGSRTKQGLAKLKNLEALD 183
           T L +  N   + +  R    + K+  +  LD
Sbjct: 116 TYLCILRNPVTNKKHYRLYV-IYKVPQVRVLD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-- 147
            ++ + FH    L  L L       +        F  L  L+ L L +N      LP   
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQA--LPDDT 148

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              L +LT L L  N I  S  ++    L +L+ L L  N
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT 150
           +  + F     L  L L  N    I       +F  L  L+ L+L +N      L  ++ 
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAA----AFTGLALLEQLDLSDN----AQLRSVDP 98

Query: 151 -----LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                L  L TL+L    ++          L  L+ L L  N
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLT 152
            F     L  L L  N  + + E     +F  L  L  L L  N      +       L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAH--VHPHAFRDLG 201

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L TL L  N++  +   + LA L+ L+ L L+ N
Sbjct: 202 RLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 130 LKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
            + + L  N  +           +LT L L  N +           L  LE LDLS N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 190 IHGSLEGNFF 199
           +  S++   F
Sbjct: 93  LR-SVDPATF 101

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSL 154
           F P   L+ LDL  N    + E      F  L+ L++L L NN     +       +  L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQL 138

Query: 155 TTLNLRYNSIEG--SRTKQGLAKLKNLEALDLSSN 187
             L L  N I        +   KL  L  LDLSSN
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN---DFNDNILP 146
            L+  LF   + L+ L L  N    +  N    +F  + QL+ L L  N    F   ++ 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRN----AFEDMAQLQKLYLSQNQISRFPVELIK 157

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL--EALDLSSN 187
             N L  L  L+L  N ++       L KL       L L +N
Sbjct: 158 DGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--L 148
           ++ S       LQ L L  N    I E+    SF SL  L+ L+L  N  ++  L     
Sbjct: 67  ISNSDLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSN--LSSSWF 120

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
             L+SLT LNL  N  +        + L  L+ L + +    
Sbjct: 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENR----AYDSFGSLRQLKMLNLGNNDFNDNILP 146
           L          ++ L+L        + +       +S       + + + +      ++ 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMK 271

Query: 147 YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            LN ++ L  L    N ++ S       +L +L+ + L +N
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--L 148
           +    F     L+ LDL  N+ + +    +   F  L  L  LNL  N +   +      
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNL----SSSWFKPLSSLTFLNLLGNPY-KTLGETSLF 145

Query: 149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           + LT L  L +          ++  A L  LE L++ ++
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           SLF    +LQ L +         + +    F  L  L+ L +  +D        L ++ +
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKD---FAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           ++ L L          +  +    ++E L+L    
Sbjct: 200 VSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 23/162 (14%)

Query: 46  PSDC-CDDWVGVKCSATT-RRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ 103
              C C      + +    +R+  L  + T         +       +    F     + 
Sbjct: 5   SPPCECHQEEDFRVTCKDIQRIPSLPPS-TQTLKLIETHL-----RTIPSHAFSNLPNIS 58

Query: 104 RLDLPMNW-FTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT-----LTSLTTL 157
           R+ + ++     +  +    SF +L ++  + + N       L Y++      L  L  L
Sbjct: 59  RIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNT----RNLTYIDPDALKELPLLKFL 110

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
            +    ++       +        L+++ N Y+  S+  N F
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVNAF 151

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 17/133 (12%)

Query: 68  LSLNYT-TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS 126
           L    +  + + + N +  EG  +L  +L  P  +L+ L +    FT          F S
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT----AACCSHFSS 335

Query: 127 L----RQLKMLNLGNNDFNDNILPYL-----NTLTSLTTLNLRYNSI--EGSRT-KQGLA 174
           +    R L  L + NN   D  +  L        + L  L L    +      +    L 
Sbjct: 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395

Query: 175 KLKNLEALDLSSN 187
              +L  LDLS+N
Sbjct: 396 ANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
             N +   GV  +   L  P  ++Q+L L     TG        +  +L  L+ L+L +N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 139 DFNDNILPYL-----NTLTSLTTLNLRYNSI--EGSRT-KQGLAKLKNLEALDLSSN 187
              D  L  L     +    L  L L Y S+           L    + + L +S+N
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 8/117 (6%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN 138
           S N +   G+ +L   L  P   L++L L     +            +    K L + NN
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 139 DFNDNILPYL-----NTLTSLTTLNLRYNSI--EGSRT-KQGLAKLKNLEALDLSSN 187
           D N+  +  L     ++   L  L L    +  +  R     +A   +L  L L SN
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND----NILPYLNTLTSLT 155
            ++Q LD+     +   + R  +    L+Q +++ L +    +    +I   L    +L 
Sbjct: 3   LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 156 TLNLRYNSIEGSRTKQGLAKLKN----LEALDLSSN 187
            LNLR N +        L  L+     ++ L L + 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 95

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 102 LQRLDLPMNWFTGIYENRAYD-----SFGSLRQLKMLNLGNNDFNDNILPYL---NTLTS 153
           L++L L +      ++          S      LK L + + +  + ++      + L  
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280

Query: 154 LTTLNLRYNSI--EGSRT-KQGLAKLKNLEALDLSSNY 188
           L T+++    +  EG+R     + K+K+L+ +++  NY
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLTSL 154
           F     LQ+L         +         G L+ LK LN+ +N      LP Y + LT+L
Sbjct: 96  FSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 155 TTLNLRYNSIE--GSRTKQGLAKLKNLEA-LDLSSN 187
             L+L  N I+       + L ++  L   LDLS N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 32/155 (20%), Positives = 49/155 (31%), Gaps = 35/155 (22%)

Query: 46  PSDCCDDWVGVKCSA-----------TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMS 94
           P       +  +C              + + + LS N                   L   
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH---------------LGSY 46

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLT 152
            F  F ELQ LDL       I +     ++ SL  L  L L  N      L     + L+
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQS--LALGAFSGLS 100

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           SL  L     ++  S     +  LK L+ L+++ N
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN----TLTSLTT 156
            L+ LDL  N    IY          L Q+ +LNL + D + N + ++         L  
Sbjct: 150 NLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLKE 204

Query: 157 LNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L L  N ++ S       +L +L+ + L +N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F P+++L+R+DL  N  + +    A D+F  LR L  L L  N   +  LP      L S
Sbjct: 52  FSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFS 105

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L L  N I           L NL  L L  N
Sbjct: 106 LQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLR 160
             + L  N    I       +F   ++L+ ++L NN  ++  L       L SL +L L 
Sbjct: 35  TEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLY 88

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
            N I     K     L +L+ L L++N
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQLLLLNAN 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F     L  L L  N  T +        F  L  L++L L  N  N   L       L +
Sbjct: 76  FQGLRSLNSLVLYGNKITEL----PKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHN 129

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L+L  N ++ +  K   + L+ ++ + L+ N
Sbjct: 130 LNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL-N 149
            +++   P+  L +L+L     T +         G+L  L  L+L +N      LP L  
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELTKL------QVDGTLPVLGTLDLSHNQLQS--LPLLGQ 97

Query: 150 TLTSLTTLNLRYNSIEGSRTKQGL-----AKLKNLEALDLSSN 187
           TL +LT L++ +N +        L       L  L+ L L  N
Sbjct: 98  TLPALTVLDVSFNRL------TSLPLGALRGLGELQELYLKGN 134

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
            ++   L L  N            +     +L  LNL   +     L    TL  L TL+
Sbjct: 30  PKDTTILHLSENLLYTFSLA----TLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLD 83

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L +N +           L  L  LD+S N
Sbjct: 84  LSHNQL--QSLPLLGQTLPALTVLDVSFN 110

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLT 152
                 ELQ L L  N    +             +L+ L+L NN+  +  LP   LN L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLANNNLTE--LPAGLLNGLE 172

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +L TL L+ NS+      +G      L    L  N
Sbjct: 173 NLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGN 205

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 20/97 (20%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNL-GNNDF--------NDNILPYLNTLT 152
           L+ L L  N    +       S  SL +L+ L++    +         + +       L 
Sbjct: 129 LETLTLARNPLRALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 153 SLTTLNLRYNSIEGSRTK--QGLAKLKNLEALDLSSN 187
           +L +L L +  I          +A L+NL++L + ++
Sbjct: 184 NLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTLNLRYN--------SIEGSRTKQG 172
           D+      L+ L L  N      LP  + +L  L  L++R           +  +     
Sbjct: 121 DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 173 LAKLKNLEALDLSSN 187
              L NL++L L   
Sbjct: 179 HQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 14/91 (15%)

Query: 100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP-YLNTLTSLTTLN 158
                L+L         +         L  L+ + +      +  LP  +     L TL 
Sbjct: 81  PGRVALELRSVPLPQFPD-----QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLT 133

Query: 159 LRYNSIEGSRTK--QGLAKLKNLEALDLSSN 187
           L  N +          +A L  L  L + + 
Sbjct: 134 LARNPL----RALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 102 LQRLDLPMNWF-----TGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLT 155
           L+ L +            +    A      L  L+ L L         LP  +  L +L 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLK 209

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +L +R + +        +  L  LE LDL   
Sbjct: 210 SLKIRNSPLSALGP--AIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR- 160
           L+ L +  +  + +       +   L +L+ L+L       N  P       L  L L+ 
Sbjct: 208 LKSLKIRNSPLSALGP-----AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 161 YNSIEGSRTK--QGLAKLKNLEALDLSSN 187
            +++          + +L  LE LDL   
Sbjct: 263 CSNL----LTLPLDIHRLTQLEKLDLRGC 287

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 33/150 (22%)

Query: 49  CCDDWVGVKCSA-----------TTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFH 97
             +    V  S               + + LS N  ++               L M    
Sbjct: 29  SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISE---------------LRMPDIS 73

Query: 98  PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTL 157
              EL+ L L  N    +        F   + L+ L++ +N   +  +     + SL  L
Sbjct: 74  FLSELRVLRLSHNRIRSLDF----HVFLFNQDLEYLDVSHNRLQN--ISCCP-MASLRHL 126

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +L +N  +     +    L  L  L LS+ 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
           +L+  F E+    L ++    I+         S      LN   N F D++    +TL  
Sbjct: 323 ALYSVFAEMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 154 LTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF 198
           L TL L+ N ++   +       + +LE LD+S N     + +   
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--- 146
            ++M           L+   N FT            +L++L+ L L  N   +       
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKN--FFKVA 396

Query: 147 -YLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                ++SL TL++  NS+      +  A  +++  L+LSSN
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 19/115 (16%)

Query: 91  LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP---Y 147
           L+  +F   ++L+ LD+  N    I       S   +  L+ L+L  NDF+   LP    
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI-------SCCPMASLRHLDLSFNDFDV--LPVCKE 141

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN---YYIHGSLEGNFF 199
              LT LT L L          +  L  + +L    +  +   Y+I G    +  
Sbjct: 142 FGNLTKLTFLGLSAAKF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNL 159
            + L L  N  + +           L +L++L L +N      L +        L  L++
Sbjct: 54  TKALSLSQNSISELRMP----DISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDV 107

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSNYY 189
            +N +           + +L  LDLS N +
Sbjct: 108 SHNRL----QNISCCPMASLRHLDLSFNDF 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS 153
            +    + +  L+        +  +    +      + +LNL +N    ++   L     
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +  L+L  N I      + +  L+ L+ L+++SN
Sbjct: 452 VKVLDLHNNRI--MSIPKDVTHLQALQELNVASN 483

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 27/110 (24%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN--------DFNDNILPYLN- 149
            +  + L L  N    I       S   +  L++L+LG N        D   + L  L  
Sbjct: 47  LKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 150 ------------TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
                        L +L  L +  N I        LA L  LE L L+ N
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 115 IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA 174
           I+E R         +++ L+       + +   L+TL +   L L  N+IE       L+
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPI-EKMDATLSTLKACKHLALSTNNIE---KISSLS 67

Query: 175 KLKNLEALDLSSN 187
            ++NL  L L  N
Sbjct: 68  GMENLRILSLGRN 80

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 22/85 (25%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYN---SIEGSRTK--------- 170
           +  +L+  K L L  N+     +  L+ + +L  L+L  N    IE              
Sbjct: 43  TLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100

Query: 171 --------QGLAKLKNLEALDLSSN 187
                    G+ KL NL  L +S+N
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYLNTLTS 153
           L    + L+ L +  N    +           L  L++L + NN   +   +  L  L  
Sbjct: 88  LDAVADTLEELWISYNQIASL------SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 154 LTTLNLRYNSIEGSRTKQG---------LAKLKNLEALD 183
           L  L L  N +     +           + +L NL+ LD
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL-----RQLKML 133
           S N++Y    + L  +  +    +  L+L  N        +  D    +       +  L
Sbjct: 30  SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSL 85

Query: 134 NLGNNDFNDNILPYL-----NTLTSLTTLNLRYNSIEGSRTKQGLAKL-----KNLEALD 183
           NL  N  +      L         ++T L+L +N    S++     +       ++ +L+
Sbjct: 86  NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLN 144

Query: 184 LSSN 187
           L  N
Sbjct: 145 LRGN 148

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 79  SYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL-RQLKMLNLGN 137
           S N + ++    L  +L      +  LDL  N F+    +    +F +L   +  LNL  
Sbjct: 88  SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147

Query: 138 NDFNDNILPYL-----NTLTSLTTLNLRYNSIEGSRTKQGLAKL-----KNLEALDLSSN 187
           ND        L         ++ +LNLR N++  S+    LAK       ++ +LDLS+N
Sbjct: 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSAN 206

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 19/129 (14%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL-----R 128
              N   N++  +    L   L      +  LDL  N        ++Y     +      
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG----LKSYAELAYIFSSIPN 225

Query: 129 QLKMLNLGNNDFND----NILPYLNTLTSLTTLNLRYNSIEGSRTKQ------GLAKLKN 178
            +  LNL  N  +     N+    ++L  L T+ L Y+ ++    +Q          ++ 
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 179 LEALDLSSN 187
           +  +D +  
Sbjct: 286 IILVDKNGK 294

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 24/131 (18%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL-----R 128
           T  +  +N    +       +  +    +  L+L  N        ++ D    +      
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG----IKSSDELIQILAAIPA 167

Query: 129 QLKMLNLGNNDFND-------NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKL----- 176
            +  LNL  N+            L  +    S+T+L+L  N + G ++   LA +     
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPA--SVTSLDLSANLL-GLKSYAELAYIFSSIP 224

Query: 177 KNLEALDLSSN 187
            ++ +L+L  N
Sbjct: 225 NHVVSLNLCLN 235

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 128 RQLKMLNLGNNDFNDNILPYL-----NTLTSLTTLNLRYNSIEGSRTKQGLAKL-----K 177
             +  L+L  N+        L     NT  S+T+LNL  NS+ G +    L ++      
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPA 80

Query: 178 NLEALDLSSN 187
           N+ +L+LS N
Sbjct: 81  NVTSLNLSGN 90

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTL 151
            +F    +L++++   N  T I E     +F     +  + L +N   +  + +     L
Sbjct: 51  GIFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLEN--VQHKMFKGL 104

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            SL TL LR N I           L ++  L L  N
Sbjct: 105 ESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDN 139

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F     +  + L  N    + +++    F  L  LK L L +N      +       L+S
Sbjct: 77  FEGASGVNEILLTSNRLENV-QHKM---FKGLESLKTLMLRSNRITC--VGNDSFIGLSS 130

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +  L+L  N I  +        L +L  L+L +N
Sbjct: 131 VRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 17/93 (18%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L+ +D+  N    +              L+ +  GNN   +  LP L  L  LT
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL--------PDLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198

Query: 156 TLNLRYNSIEGSRTKQGL-AKLKNLEALDLSSN 187
            +    NS++       L     +LE++   +N
Sbjct: 199 AIYADNNSLK------KLPDLPLSLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L  +    N    +              L+ +  GNN   +  LP L  L  LT
Sbjct: 191 LQNLPFLTAIYADNNSLKKL--------PDLPLSLESIVAGNNILEE--LPELQNLPFLT 240

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY 188
           T+    N ++            +LEAL++  NY
Sbjct: 241 TIYADNNLLKTLPD-----LPPSLEALNVRDNY 268

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 25/102 (24%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI---------------L 145
            L+ L    N  T + E        SL+ L + N      +D                 L
Sbjct: 92  HLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 146 PYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           P L   + L  +++  NS+     K+      +LE +   +N
Sbjct: 147 PELQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNN 183

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ +    N    +          +L  L  +   NN      LP  +   SL  LN+R 
Sbjct: 217 LESIVAGNNILEEL------PELQNLPFLTTIYADNNLLKT--LP--DLPPSLEALNVRD 266

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSNYY 189
           N +            ++L  LD+S N +
Sbjct: 267 NYLTDLP-----ELPQSLTFLDVSENIF 289

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 14/89 (15%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              L +L    N  T +              L  L   +N   +  L  +  LT LT LN
Sbjct: 63  LTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTN--LD-VTPLTKLTYLN 112

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              N +    TK  +++   L  L+ + N
Sbjct: 113 CDTNKL----TKLDVSQNPLLTYLNCARN 137

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL 182
           S   L  L  L+  N+   D  +  +  LT LT L    N+I    T   L++  NL  L
Sbjct: 37  SEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI----TTLDLSQNTNLTYL 90

Query: 183 DLSSN 187
              SN
Sbjct: 91  ACDSN 95

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
             P  +L  L+   N  T +              L  LN   N   +  +  ++  T LT
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE--ID-VSHNTQLT 151

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L+   N      TK  +     L  LD S N
Sbjct: 152 ELDCHLNKKI---TKLDVTPQTQLTTLDCSFN 180

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L  L+   N  T I             QL  L+   N         +   T LT
Sbjct: 123 VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLN--KKITKLDVTPQTQLT 173

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TL+  +N I    T+  +++ K L  L+  +N
Sbjct: 174 TLDCSFNKI----TELDVSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 13/89 (14%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
             +L  L         I             QL                 +   T L  L+
Sbjct: 253 LSKLTTLHCIQTDLLEI-------DLTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLD 303

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            +   I    T+  L++   L  L L++ 
Sbjct: 304 CQAAGI----TELDLSQNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 13/87 (14%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           +L  LD      T +             +L  L L N +  +  L  ++  T L +L+  
Sbjct: 298 QLYLLDCQAAGITEL-------DLSQNPKLVYLYLNNTELTE--LD-VSHNTKLKSLSCV 347

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
              I+       + K+  L     +  
Sbjct: 348 NAHIQ---DFSSVGKIPALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                +L  LD  +N      +           QL  L+   N   +  L  ++    L 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKITE--LD-VSQNKLLN 194

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            LN   N+I    TK  L +   L  LD SSN
Sbjct: 195 RLNCDTNNI----TKLDLNQNIQLTFLDCSSN 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ L +  N  T +             +LK L +  N      LP     + L +L++  
Sbjct: 223 LKELIVSGNRLTSL--------PVLPSELKELMVSGNRLTS--LP--MLPSGLLSLSVYR 270

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N +  +R  + L  L +   ++L  N
Sbjct: 271 NQL--TRLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 19/90 (21%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTL 157
              +  L +P N  T +             +L+ L +  N      LP     L  L+  
Sbjct: 60  PAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLTS--LPVLPPGLLELSIF 109

Query: 158 NLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +     +              L  L +  N
Sbjct: 110 SNPLTHLPAL--------PSGLCKLWIFGN 131

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
             EL+ L++  N  T +           L +L + +          LP L   + L  L 
Sbjct: 80  PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTH-----LPAL--PSGLCKLW 127

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +  N +              L+ L +S N
Sbjct: 128 IFGNQLTSLP-----VLPPGLQELSVSDN 151

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 13/86 (15%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
              L++  +  T + +            +  L + +N+     LP       L TL +  
Sbjct: 42  NAVLNVGESGLTTLPDC-------LPAHITTLVIPDNNLTS--LP--ALPPELRTLEVSG 90

Query: 162 NSIEGSRTKQGLAKLKNLEALDLSSN 187
           N +  +        L  L        
Sbjct: 91  NQL--TSLPVLPPGLLELSIFSNPLT 114

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDN-----ILPYLNTLTSLTTLNLRYNSI--EGSRT-KQGL 173
            +F S R L  + +  N          +L  L     L  L+L+ N+    GS      L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 174 AKLKNLEALDLSSN 187
               NL  L L+  
Sbjct: 241 KSWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL------ 127
            +   S N++  E    L+ ++    ++L+  +     FTG  ++   ++   L      
Sbjct: 35  KEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLK 92

Query: 128 -RQLKMLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSI--EGSR----------TK 170
             +L  + L +N F       ++ +L+  T L  L L  N +  +               
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 171 QGLAKLKNLEALDLSSN 187
           +       L ++    N
Sbjct: 153 KKAKNAPPLRSIICGRN 169

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 130 LKMLNLGNNDFND----NILPYLNTLTSLTTLNLRYNSI--EGSRT-KQGLAKLKNLEAL 182
           ++  +L  +        ++   L    S+  + L  N+I  E +R   + +A  K+LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 183 DLSSNY 188
           + S  +
Sbjct: 66  EFSDIF 71

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 22/130 (16%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT-----GIYENRAYDSFGSLR 128
                  N +  EG+  L +      +EL+ LDL  N FT      +       +  S  
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-----ALKSWP 244

Query: 129 QLKMLNLGNNDFNDNILPYL------NTLTSLTTLNLRYNSIEGSRTKQGLA-----KLK 177
            L+ L L +   +      +           L TL L+YN I      + L      K+ 
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMP 303

Query: 178 NLEALDLSSN 187
           +L  L+L+ N
Sbjct: 304 DLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT--GIYENRAYDSFGSLRQLK 131
                  N +    +       F     L  + +  N     GI E+   +     ++LK
Sbjct: 162 RSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGI-EHLLLEGLAYCQELK 219

Query: 132 MLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSI--EGSRT-KQGLAKLKN--LEAL 182
           +L+L +N F       +   L +  +L  L L    +   G+       +KL+N  L+ L
Sbjct: 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279

Query: 183 DLSSN 187
            L  N
Sbjct: 280 RLQYN 284

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 16/76 (21%)

Query: 128 RQLKMLNLGNNDFND-------------NILPYLNTLTSLTTLNLRYNSIEGSRTK---Q 171
             L+ L L NN                  +         L ++    N +E    K   +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 172 GLAKLKNLEALDLSSN 187
                + L  + +  N
Sbjct: 182 TFQSHRLLHTVKMVQN 197

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 11/122 (9%)

Query: 74  TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKML 133
            + N +   +      V+   L      L  ++L                     + + L
Sbjct: 75  RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRARKL 131

Query: 134 NLGNNDFNDNILPYL-----NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLS 185
            L  N         L     +    +TTL L  N +  +      +GLA   ++  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 186 SN 187
             
Sbjct: 192 HT 193

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/134 (20%), Positives = 41/134 (30%), Gaps = 25/134 (18%)

Query: 70  LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT---------GIYENRA 120
                K     NS+  E    L   L H   ++  L L  N  T         G+  N  
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT- 183

Query: 121 YDSFGSLRQLKMLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSI--EGSRT-KQGL 173
                    +  L+L +    D     +   L+    L  LN+ YN      +    +  
Sbjct: 184 --------SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235

Query: 174 AKLKNLEALDLSSN 187
            +  +LE L L  N
Sbjct: 236 REHPSLELLHLYFN 249

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F   + L+ L +  N    +        F  L  L  L L  N      LP    ++LT 
Sbjct: 81  FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKS--LPPRVFDSLTK 134

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           LT L+L YN ++ S  K    KL +L+ L L +N
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--YLNTLTS 153
           FH   +L+ L L  N    +        F  L+ L+ L + +N      LP    + L +
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAG----IFKELKNLETLWVTDNKLQA--LPIGVFDQLVN 110

Query: 154 LTTLNLRYNSIEGSRTKQGL-----AKLKNLEALDLSSN 187
           L  L L  N +      + L       L  L  L L  N
Sbjct: 111 LAELRLDRNQL------KSLPPRVFDSLTKLTYLSLGYN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNL 159
            ++LDL  N  + +       +F  L +L++L L +N      LP      L +L TL +
Sbjct: 39  TKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWV 92

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
             N ++ +       +L NL  L L  N
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           F    +L  L L  N    + +      F  L  LK L L NN          + LT L 
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKG----VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           TL L  N ++    +     L+ L+ L L  N
Sbjct: 185 TLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTS 153
           F     L  L L  N    +   R    F SL +L  L+LG N+     LP    + LTS
Sbjct: 105 FDQLVNLAELRLDRNQLKSL-PPRV---FDSLTKLTYLSLGYNELQS--LPKGVFDKLTS 158

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L  L L  N ++    +    KL  L+ L L +N
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 10/71 (14%)

Query: 122 DSFGSLRQLKMLNLGNNDFNDNILPYLNT-----LTSLTTLNLRYNSIEGSRTKQGLAKL 176
                   L  L + N       L +L       L  L  L +  + +            
Sbjct: 25  HHLPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFT 79

Query: 177 KNLEALDLSSN 187
             L  L+LS N
Sbjct: 80  PRLSRLNLSFN 90

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 96  FHPFEELQRLDLP-MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTS 153
               E L  L +        +           L +L+ L +  +     + P   +    
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL----RDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPR 81

Query: 154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           L+ LNL +N++          +  +L+ L LS N
Sbjct: 82  LSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGN 113

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 18/117 (15%)

Query: 90  VLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN 149
           V+    F  F +L+++++  N    + E      F +L +L  + +       N L Y+N
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHEIRIEKA----NNLLYIN 96

Query: 150 T-----LTSLTTLNLRYNSIEG--SRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF 199
                 L +L  L +    I+      K    +      LD+  N  IH ++E N F
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL---LDIQDNINIH-TIERNSF 149

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
           FH       LD+       +          +L++L+  +  N       LP L  L +L 
Sbjct: 198 FHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTYNL----KKLPTLEKLVALM 249

Query: 156 TLNLRYNS 163
             +L Y S
Sbjct: 250 EASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY-LNTLTSLTTLNL 159
           E   L L  N    I       +F   +  ++    NN+  + +     +  +    L++
Sbjct: 155 ESVILWLNKNGIQEI----HNSAFNGTQLDELNLSDNNNL-EELPNDVFHGASGPVILDI 209

Query: 160 RYNSIEGSRTKQGLAKLKNLEALDLSSN 187
               I  S    GL  LK L A    + 
Sbjct: 210 SRTRIH-SLPSYGLENLKKLRARSTYNL 236

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLR 160
             L L  N FT + +        + + L +++L NN  +   L     + +T L TL L 
Sbjct: 34  TELYLDGNQFTLVPK-----ELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILS 86

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
           YN +      +    LK+L  L L  N
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGN 112

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 94  SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYLNTLT 152
           +      ++Q +D   +       +  +D    L+ ++ + L       D  L  L+ L 
Sbjct: 55  TGPLDKYKIQAIDATDSCIM----SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 153 ----SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI 190
               S+  + +        +    L   +NL+ L LS    +
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 95  LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLT 152
           LF     L +L+L  N  TGI E  A++       ++ L LG N   +  +       L 
Sbjct: 49  LFGRLPHLVKLELKRNQLTGI-EPNAFEG---ASHIQELQLGENKIKE--ISNKMFLGLH 102

Query: 153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L TLNL  N I           L +L +L+L+SN
Sbjct: 103 QLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 18/90 (20%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
           L+ ++   N  T + E            L++L++ NN      LP      SL  L++  
Sbjct: 142 LEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTF--LP--ELPESLEALDVST 189

Query: 162 NSIEGSRTKQGLAKLKNLE----ALDLSSN 187
           N +E         +  + E          N
Sbjct: 190 NLLE--SLPAVPVRNHHSEETEIFFRCREN 217

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 99  FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLN 158
              L+ LD   N  + + E            LK L++ NN      LP       L  +N
Sbjct: 99  PASLEYLDACDNRLSTLPE--------LPASLKHLDVDNNQLTM--LP--ELPALLEYIN 146

Query: 159 LRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
              N +             +LE L + +N
Sbjct: 147 ADNNQLT-----MLPELPTSLEVLSVRNN 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 31/142 (21%), Positives = 44/142 (30%), Gaps = 27/142 (19%)

Query: 58  CSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSL-----FHPFEELQRLDLPMNWF 112
             A T +   L     T           + ++  N  +           ++ L L  N  
Sbjct: 17  AFAETIKA-NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL 75

Query: 113 TGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLRYNSIEGSRTK 170
             I       +   L  L  L L  N      LP    + LT+L  L L  N +      
Sbjct: 76  HDI------SALKELTNLTYLILTGNQLQS--LPNGVFDKLTNLKELVLVENQL------ 121

Query: 171 QGL-----AKLKNLEALDLSSN 187
           Q L      KL NL  L+L+ N
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHN 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 19/92 (20%)

Query: 103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNTLTSLTTLNLR 160
           ++LDL       + +     +F  L +L  LNL  N      L     + LT L TL L 
Sbjct: 38  EKLDLQSTGLATLSDA----TFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLA 91

Query: 161 YNSIEGSRTKQGL-----AKLKNLEALDLSSN 187
            N +        L       L  L+ L L  N
Sbjct: 92  NNQL------ASLPLGVFDHLTQLDKLYLGGN 117

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 88  VLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY 147
            +   ++       +Q +DL  +       +  +       +L+ L+L     +D I+  
Sbjct: 81  FMDQPLAEHFSPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAK-LKNLEALDLSSNYYI 190
           L   ++L  LNL   S       Q L      L+ L+LS  +  
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.65
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.52
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.43
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.82
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.76
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.21
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.91

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=5.5e-27  Score=189.60  Aligned_cols=162  Identities=22%  Similarity=0.393  Sum_probs=124.9

Q ss_pred             CCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCceEecCCC--CCeEEEecCC---------
Q 045715            6 GCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDD--WVGVKCSATT--RRVMQLSLNY---------   72 (199)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~--w~gv~C~~~~--~~v~~l~l~~---------   72 (199)
                      .|.++|++||++||+++.+|.       .+.+|..     +.+|| .  |.||+|+...  ++|+.+++++         
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~-----~~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~   68 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI   68 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-------cccCCCC-----CCCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence            699999999999999996654       5789976     56888 7  9999998644  7888887653         


Q ss_pred             ---------ccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC
Q 045715           73 ---------TTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND  142 (199)
Q Consensus        73 ---------~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~  142 (199)
                               +++|++++ |.+..     ..+..|.++++|++|++++|.+++.+|.    .|..+++|++|++++|++++
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~  139 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVG-----PIPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSG  139 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEES-----CCCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEES
T ss_pred             ChhHhCCCCCCeeeCCCCCcccc-----cCChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCC
Confidence                     35677773 66653     2355677778888888888888777776    77778888888888888877


Q ss_pred             CChhhhcCCCCCCEEecCCCcCCCccchhhccCCC-CCCEEeCcCCccC
Q 045715          143 NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLK-NLEALDLSSNYYI  190 (199)
Q Consensus       143 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~-~L~~L~Ls~N~l~  190 (199)
                      .+|..+..+++|++|+|++|.+++.+|. .+..++ +|+.|++++|+++
T Consensus       140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          140 TLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEEECCG-GGGCCCTTCCEEECCSSEEE
T ss_pred             cCChHHhcCCCCCeEECcCCcccCcCCH-HHhhhhhcCcEEECcCCeee
Confidence            7777777888888888888888766775 677776 7788888887776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=6e-23  Score=183.77  Aligned_cols=53  Identities=25%  Similarity=0.529  Sum_probs=43.8

Q ss_pred             CCCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecCC
Q 045715            5 KGCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNY   72 (199)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~   72 (199)
                      ..+.++|+.||++||+++.+|.       .+++|..     +.+|| .|.||+|+  .++|+.+++++
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-------~l~~W~~-----~~~~C-~w~gv~C~--~~~v~~L~L~~   59 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-------LLPDWSS-----NKNPC-TFDGVTCR--DDKVTSIDLSS   59 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-------SSTTCCT-----TSCGG-GSTTEEEE--TTEEEEEECTT
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-------cccCCCC-----CCCCc-CCcceEEC--CCcEEEEECCC
Confidence            3467889999999999997654       6889986     57899 99999998  58999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.88  E-value=1.6e-22  Score=177.74  Aligned_cols=173  Identities=15%  Similarity=0.147  Sum_probs=134.6

Q ss_pred             HHhHHHHHHHHhccccCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC---CceEecCCCCCeEEEecCCc----------
Q 045715            9 ETERTALLEIKSFFISVSDIGYD--DKILPSWVGEDDGMPSDCCDDW---VGVKCSATTRRVMQLSLNYT----------   73 (199)
Q Consensus         9 ~~~~~al~~~~~~~~~~~~~~~~--~~~~~~W~~~~~~~~~~~c~~w---~gv~C~~~~~~v~~l~l~~~----------   73 (199)
                      ..|+.||.+|++++.++.-...+  .....+|+.     ..+|| .|   .||+|+.. ++|++++|++.          
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-----~~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l  101 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-----NKELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAI  101 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCC-----SSCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGG
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-----CCCcc-cccCCCCeEEcCC-CCEEEEEecCcccCCcCChHH
Confidence            46899999999999777510000  012347987     67899 99   99999864 89999998754          


Q ss_pred             ------cceeccCCCcccc-------------------------------------------------------------
Q 045715           74 ------TKFNYSYNSVYWE-------------------------------------------------------------   86 (199)
Q Consensus        74 ------~~L~ls~N~~~~~-------------------------------------------------------------   86 (199)
                            +.|+|++|.+...                                                             
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence                  7899999965100                                                             


Q ss_pred             ------------ccccccccccCCCCCCcEEECCCCccCcc-----------------ccccchhhcc--CCCCCCEEEc
Q 045715           87 ------------GVLVLNMSLFHPFEELQRLDLPMNWFTGI-----------------YENRAYDSFG--SLRQLKMLNL  135 (199)
Q Consensus        87 ------------~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~~~~~--~l~~L~~L~L  135 (199)
                                  .+.. .|..+.++++|++|+|++|.+++.                 +|.    .++  .+++|++|++
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L  256 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEV  256 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEE
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEe
Confidence                        1112 255688899999999999999985                 787    888  9999999999


Q ss_pred             CCCCCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchhhccCC------CCCCEEeCcCCccCCCCcCC
Q 045715          136 GNNDFNDNILPYLNTLTSLTTLNLRYNS-IEG-SRTKQGLAKL------KNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       136 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l------~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      ++|++.+.+|..++++++|++|+|++|+ +++ .+|. .++.+      ++|++|++++|+++  .+|.
T Consensus       257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~  322 (636)
T 4eco_A          257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK--TFPV  322 (636)
T ss_dssp             ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS--SCCC
T ss_pred             cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC--ccCc
Confidence            9999999999999999999999999998 887 7776 56665      88888888888887  5665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=3.9e-20  Score=143.12  Aligned_cols=133  Identities=23%  Similarity=0.286  Sum_probs=102.8

Q ss_pred             CCCCCCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc
Q 045715           46 PSDCCDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF  124 (199)
Q Consensus        46 ~~~~c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  124 (199)
                      ....| +|.+|.|.+... .+..--..+++.|+|++|.+..     +.+..|..+++|++|+|++|.++...+.    .|
T Consensus        15 ~~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~N~l~~i~~~----~~   84 (229)
T 3e6j_A           15 SQCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-----LEPGVFDSLINLKELYLGSNQLGALPVG----VF   84 (229)
T ss_dssp             TTCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TT
T ss_pred             CCCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-----cCHHHhhCccCCcEEECCCCCCCCcChh----hc
Confidence            46778 999999976321 2222123677888999988876     5566778888888888888888775555    67


Q ss_pred             cCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          125 GSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       125 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|. .+..+++|++|+|++|+|+
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPR-GIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCT-TGGGCTTCSEEECCSSCCC
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCc-ccccCCCCCEEECCCCcCC
Confidence            888888888888888887666677888888888888888886 776 6788888888888888887

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=6.9e-21  Score=172.17  Aligned_cols=169  Identities=17%  Similarity=0.194  Sum_probs=127.1

Q ss_pred             CcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC------------CceEecCCCCCeEEEecCC
Q 045715            7 CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDC--CDDW------------VGVKCSATTRRVMQLSLNY   72 (199)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~--c~~w------------~gv~C~~~~~~v~~l~l~~   72 (199)
                      +..+|+.||++||+++.+|           +|+..++....+|  | .|            .||+|+. .++|+.|+|++
T Consensus       266 ~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~  332 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG  332 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT
T ss_pred             cchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCcc-ccccccccccccCcCceEecC-CCCEEEEECcc
Confidence            4557999999999999554           3443100001234  8 99            9999986 68999999875


Q ss_pred             c----------------cceec-cCCCccccc------------------------------------------------
Q 045715           73 T----------------TKFNY-SYNSVYWEG------------------------------------------------   87 (199)
Q Consensus        73 ~----------------~~L~l-s~N~~~~~~------------------------------------------------   87 (199)
                      .                +.|+| +.|.+....                                                
T Consensus       333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~  412 (876)
T 4ecn_A          333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP  412 (876)
T ss_dssp             TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred             CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence            4                78999 777543220                                                


Q ss_pred             ------------------------cccccccccCCCCCCcEEECCCCccCc-----------------cccccchhhcc-
Q 045715           88 ------------------------VLVLNMSLFHPFEELQRLDLPMNWFTG-----------------IYENRAYDSFG-  125 (199)
Q Consensus        88 ------------------------~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~~~~~-  125 (199)
                                              +.. .|..|.++++|++|+|++|.+++                 .+|.    .++ 
T Consensus       413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f  487 (876)
T 4ecn_A          413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSW  487 (876)
T ss_dssp             TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCG
T ss_pred             cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhh
Confidence                                    000 25568889999999999999998                 3777    766 


Q ss_pred             -CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchhhccCC-------CCCCEEeCcCCccCCCCcC
Q 045715          126 -SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNS-IEG-SRTKQGLAKL-------KNLEALDLSSNYYIHGSLE  195 (199)
Q Consensus       126 -~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~ip~~~~~~l-------~~L~~L~Ls~N~l~~~~ip  195 (199)
                       .+++|++|+|++|++.+.+|..|+++++|+.|+|++|+ +++ .+|. .++.+       ++|++|+|++|+++  .+|
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip  564 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE--EFP  564 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred             ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence             89999999999999998999999999999999999998 887 6775 44444       48888888888887  566


Q ss_pred             C
Q 045715          196 G  196 (199)
Q Consensus       196 ~  196 (199)
                      .
T Consensus       565 ~  565 (876)
T 4ecn_A          565 A  565 (876)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.3e-21  Score=159.15  Aligned_cols=169  Identities=18%  Similarity=0.212  Sum_probs=103.4

Q ss_pred             CCcHHhHHHHHHHHhccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecC--------CCCCeEEEecC-----
Q 045715            6 GCLETERTALLEIKSFFI-SVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSA--------TTRRVMQLSLN-----   71 (199)
Q Consensus         6 ~~~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~--------~~~~v~~l~l~-----   71 (199)
                      .+..+|+.||++||..+. ++.      .+...|.... ....++| .|.|+.|..        ...+|+.++++     
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~-~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~   94 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRN------RWHSAWRQAN-SNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP   94 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHT-TTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred             ccCchHHHHHHHHHHhccCCch------hhhhhhcccc-ccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence            356678999999999884 443      4678894100 0156788 999999952        23466666654     


Q ss_pred             ----------CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC---------------
Q 045715           72 ----------YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS---------------  126 (199)
Q Consensus        72 ----------~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~---------------  126 (199)
                                ++++|++++|.+..     + +..+..+++|++|+|++|.++. +|.    .+..               
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~~-----l-p~~~~~l~~L~~L~Ls~n~l~~-lp~----~l~~l~~L~~L~L~~n~~~  163 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLME-----L-PDTMQQFAGLETLTLARNPLRA-LPA----SIASLNRLRELSIRACPEL  163 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCCC-----C-CSCGGGGTTCSEEEEESCCCCC-CCG----GGGGCTTCCEEEEEEETTC
T ss_pred             hcChhhhhCCCCCEEECCCCCccc-----h-hHHHhccCCCCEEECCCCcccc-CcH----HHhcCcCCCEEECCCCCCc
Confidence                      34778888887763     2 3345556666666666666663 454    4444               


Q ss_pred             ------------------CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715          127 ------------------LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       127 ------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                                        +++|++|++++|+++ .+|..++.+++|++|+|++|.+++ +|. .+..+++|+.|++++|+
T Consensus       164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-GGGGCTTCCEEECTTCT
T ss_pred             cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-hhccCCCCCEEECcCCc
Confidence                              445555555555555 445555566666666666666665 554 46666666666666666


Q ss_pred             cCCCCcCCC
Q 045715          189 YIHGSLEGN  197 (199)
Q Consensus       189 l~~~~ip~~  197 (199)
                      +. +.+|..
T Consensus       241 ~~-~~~p~~  248 (328)
T 4fcg_A          241 AL-RNYPPI  248 (328)
T ss_dssp             TC-CBCCCC
T ss_pred             ch-hhhHHH
Confidence            65 344443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.2e-19  Score=138.05  Aligned_cols=128  Identities=25%  Similarity=0.345  Sum_probs=101.9

Q ss_pred             CCCCCceEecCCCCCeEEE--e-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715           50 CDDWVGVKCSATTRRVMQL--S-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS  126 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l--~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  126 (199)
                      | .|..|.|.+..  ++.+  . ...++.|++++|.+..     +.+..|..+++|++|+|++|.+++..|.    .|..
T Consensus        11 C-~~~~v~c~~~~--l~~iP~~l~~~l~~L~l~~n~i~~-----i~~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~   78 (220)
T 2v9t_B           11 C-SNNIVDCRGKG--LTEIPTNLPETITEIRLEQNTIKV-----IPPGAFSPYKKLRRIDLSNNQISELAPD----AFQG   78 (220)
T ss_dssp             E-ETTEEECTTSC--CSSCCSSCCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECCSSCCCEECTT----TTTT
T ss_pred             E-CCCEEEcCCCC--cCcCCCccCcCCCEEECCCCcCCC-----cCHhHhhCCCCCCEEECCCCcCCCcCHH----HhhC
Confidence            6 89999997632  2222  1 2467888899888875     5566788888999999999999887777    8888


Q ss_pred             CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       127 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|++|+|++|+++...+..|..+++|++|+|++|++++ +++..|..+++|+.|+|++|+|+
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCC
Confidence            8999999999999886655667888889999999999888 54447888889999999999888

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=4.7e-19  Score=134.65  Aligned_cols=130  Identities=26%  Similarity=0.293  Sum_probs=88.3

Q ss_pred             CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715           50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR  128 (199)
Q Consensus        50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  128 (199)
                      | .|.+|.|..... .+..-..+.++.|++++|.+..     +.+..|..+++|++|++++|++++..+.    .|..++
T Consensus         7 C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~   76 (208)
T 2o6s_A            7 C-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-----LPNGVFDELTSLTQLYLGGNKLQSLPNG----VFNKLT   76 (208)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred             E-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-----CChhhhcccccCcEEECCCCccCccChh----hcCCCC
Confidence            6 899999976322 1111123456778888877764     4455566777777777777777765444    566777


Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|++++|++++..+..|..+++|++|++++|.+++ ++...+..+++|++|++++|+++
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccc
Confidence            77777777777775555556777777777777777776 55445677777777777777776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=7.3e-19  Score=137.45  Aligned_cols=107  Identities=31%  Similarity=0.400  Sum_probs=65.2

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      ++|++++|.+..     +.+..|..+++|++|++++|.+++..+.    .|..+++|++|+|++|++++..+..|..+++
T Consensus        62 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           62 TWLNLDYNQLQT-----LSAGVFDDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             CEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEECCCCcCCc-----cCHhHhccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            444444444443     3344455566666666666666654444    5566666666666666666555555666667


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |++|+|++|++++ +|...|..+++|++|+|++|+|+
T Consensus       133 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          133 LKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCC
Confidence            7777777777666 55445666777777777777776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=5.5e-19  Score=153.43  Aligned_cols=133  Identities=24%  Similarity=0.264  Sum_probs=108.0

Q ss_pred             ceEecCCCCCeEEEecC-CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEE
Q 045715           55 GVKCSATTRRVMQLSLN-YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKML  133 (199)
Q Consensus        55 gv~C~~~~~~v~~l~l~-~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L  133 (199)
                      .|.|.+.....+.-+++ .+++|+|++|.++.     +++..|.++++|++|+|++|.|+++.|.    +|..+++|++|
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~-----l~~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L  105 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTL  105 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEE
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCC-----CCHHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEE
Confidence            46786533222222443 67899999999986     6678899999999999999999987776    88999999999


Q ss_pred             EcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          134 NLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       134 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      +|++|++++..+..|.++++|++|+|++|++++ +|...|+++++|++|++++|.+++..+|..
T Consensus       106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  168 (635)
T 4g8a_A          106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY  168 (635)
T ss_dssp             ECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             EccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchh
Confidence            999999987777788999999999999999988 776578899999999999999986666643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.79  E-value=1.7e-18  Score=128.47  Aligned_cols=129  Identities=20%  Similarity=0.325  Sum_probs=110.5

Q ss_pred             CCCCCceEecCCCCCeEEE---ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715           50 CDDWVGVKCSATTRRVMQL---SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS  126 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l---~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  126 (199)
                      | .|.++.|....  ++.+   ..+.++.|++++|.+..     +++..|..+++|++|++++|.+++..+.    .|..
T Consensus         7 C-~~~~l~~~~~~--l~~~p~~~~~~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~   74 (177)
T 2o6r_A            7 C-SGTEIRCNSKG--LTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSQNQIQSLPDG----VFDK   74 (177)
T ss_dssp             E-ETTEEECCSSC--CSSCCTTCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTT
T ss_pred             e-CCCEEEecCCC--CccCCCCCCCCCcEEEeCCCcccE-----eCHHHhcCcccccEEECCCCcceEeChh----HccC
Confidence            5 89999997632  2222   23578999999999875     5567788999999999999999986665    6899


Q ss_pred             CCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       127 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|++++|++++..+..+..+++|++|++++|.+++ +|...+..+++|++|++++|++++
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence            9999999999999998777778999999999999999998 777567889999999999999983

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=6.7e-19  Score=132.60  Aligned_cols=131  Identities=27%  Similarity=0.340  Sum_probs=110.7

Q ss_pred             CCCCCceEecCCCC-CeEEEecCCccceeccCCCcccccccccccc-ccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715           50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMS-LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL  127 (199)
Q Consensus        50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l  127 (199)
                      | .|..+.|.+... .+..--...++.|++++|.+..     +.+. .|..+++|++|+|++|.+++..|.    .|..+
T Consensus         8 C-~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l   77 (192)
T 1w8a_A            8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGIEPN----AFEGA   77 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCBCTT----TTTTC
T ss_pred             E-CCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCcCHh----HcCCc
Confidence            6 899999976322 2222123377999999999876     4443 588999999999999999998888    99999


Q ss_pred             CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++..|. .+..+++|++|+|++|++++
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence            9999999999999988888899999999999999999995554 89999999999999999983

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=2.1e-18  Score=136.18  Aligned_cols=90  Identities=28%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      |..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|..+++|++|+|++|.+++ +|...|..
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~  155 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK  155 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred             hcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccC
Confidence            34444444444444444443333    44555555555555555554444445555556666666665555 44434555


Q ss_pred             CCCCCEEeCcCCccC
Q 045715          176 LKNLEALDLSSNYYI  190 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~  190 (199)
                      +++|+.|++++|+++
T Consensus       156 l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          156 LTSLKELRLYNNQLK  170 (270)
T ss_dssp             CTTCCEEECCSSCCS
T ss_pred             CcccceeEecCCcCc
Confidence            666666666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.7e-18  Score=131.99  Aligned_cols=130  Identities=23%  Similarity=0.333  Sum_probs=85.2

Q ss_pred             CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccc-cccccCCCCCCcEEECCCCccCccccccchhhccCC
Q 045715           50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVL-NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSL  127 (199)
Q Consensus        50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l  127 (199)
                      | .|..+.|.+... .+..--...++.|++++|.+..     + +...|..+++|++|+|++|.+++..+.    .|..+
T Consensus        11 C-~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l   80 (220)
T 2v70_A           11 C-EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTV-----LEATGIFKKLPQLRKINFSNNKITDIEEG----AFEGA   80 (220)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECCCCCGGGCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred             E-CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCc-----cCchhhhccCCCCCEEECCCCcCCEECHH----HhCCC
Confidence            5 788888875321 1111112345677777777765     3 234466677777777777777776555    67777


Q ss_pred             CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++ +++..|..+++|+.|+|++|+|+
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCC
Confidence            777777777777776666667777777777777777776 43336777777777777777776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=6.4e-18  Score=127.44  Aligned_cols=129  Identities=22%  Similarity=0.207  Sum_probs=110.0

Q ss_pred             CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715           50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR  128 (199)
Q Consensus        50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  128 (199)
                      | .|..+.|.+... .+..--..+++.|++++|.+..     + +..|..+++|++|+|++|.+++..+.    .|..++
T Consensus        10 C-~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-----i-p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~   78 (193)
T 2wfh_A           10 C-LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-----V-PKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMT   78 (193)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-----C-CGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCT
T ss_pred             e-CCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-----h-HHHhhcccCCCEEECCCCcCCEeCHh----HccCCC
Confidence            5 788899975321 1211123578999999999974     4 36788999999999999999997777    899999


Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|+|++|++++..+..|..+++|++|+|++|.++. +|...|..+++|+.|++++|++.
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence            99999999999998888889999999999999999998 77767999999999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=2.1e-17  Score=129.11  Aligned_cols=107  Identities=23%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      ++|++++|.+..     +++..|..+++|++|+|++|.+++..+.    .|..+++|++|+|++|++++..+..|..+++
T Consensus        86 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           86 GTLGLANNQLAS-----LPLGVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             CEEECTTSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEECCCCcccc-----cChhHhcccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            445555555543     3344444555555555555555543333    3445555555555555555444444555555


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |++|+|++|++++ ++...+..+++|+.|++++|+++
T Consensus       157 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCcee
Confidence            5555555555554 33334455555555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.5e-17  Score=127.81  Aligned_cols=112  Identities=23%  Similarity=0.238  Sum_probs=102.0

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      .+..++.|++++|.+..     +.+..|..+++|++|+|++|.+++..+.    .|..+++|++|+|++|++++..|..|
T Consensus        55 ~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~  125 (220)
T 2v70_A           55 KLPQLRKINFSNNKITD-----IEEGAFEGASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSF  125 (220)
T ss_dssp             GCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCGG----GGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred             cCCCCCEEECCCCcCCE-----ECHHHhCCCCCCCEEECCCCccCccCHh----HhcCCcCCCEEECCCCcCCeECHhHc
Confidence            35678999999999986     6677899999999999999999997776    79999999999999999998889999


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|++|+|++|++++ +++..|..+++|+.|+|++|+++
T Consensus       126 ~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCc
Confidence            999999999999999999 54448999999999999999987

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=2.9e-17  Score=126.16  Aligned_cols=111  Identities=23%  Similarity=0.285  Sum_probs=100.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +.+++.|+|++|.+..     +.+..|..+++|++|+|++|.++...+.    .|..+++|++|+|++|++++..|..|.
T Consensus        55 l~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISE-----LAPDAFQGLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             CTTCCEEECCSSCCCE-----ECTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCEEECCCCcCCC-----cCHHHhhCCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCCCCCCEeCHHHcC
Confidence            4567899999999986     6678899999999999999999986555    688999999999999999988899999


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|+.|+|++|.+++ ++...|..+++|+.|+|++|+++
T Consensus       126 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence            99999999999999999 66657999999999999999986

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=2.1e-17  Score=135.79  Aligned_cols=130  Identities=23%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             CCCCCceEecCCCCCeEEEe-cCCccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCC
Q 045715           50 CDDWVGVKCSATTRRVMQLS-LNYTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSL  127 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l  127 (199)
                      | .+..+.|.+.......-. ...++.|+|++|.+..     +.+..|. .+++|++|+|++|.+++..+.    .|..+
T Consensus        18 C-~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l   87 (361)
T 2xot_A           18 C-ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-----LRAEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPV   87 (361)
T ss_dssp             E-ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-----ECTTSSSSCCTTCCEEECCSSCCCEECTT----TTTTC
T ss_pred             E-CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-----cChhhhhhcccccCEEECCCCcCCccChh----hccCC
Confidence            5 778888865221110001 1224556666665544     3333333 444555555555555443333    44444


Q ss_pred             CCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       128 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|+|++|+++...+..|..+++|++|+|++|+|++ +++..|..+++|+.|+|++|+|+
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCC
Confidence            444444444444443333344444444444444444444 22223444444444444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=1.2e-17  Score=138.15  Aligned_cols=93  Identities=24%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      +..|..+++|++|++++|.+++..|.    .|..+++|++|++++|+++...+..|..+++|++|++++|.+++ +++..
T Consensus        86 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  160 (390)
T 3o6n_A           86 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDT  160 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTT
T ss_pred             hhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhh
Confidence            34455555555555555555554444    45555566666666666553333334555566666666666555 33334


Q ss_pred             ccCCCCCCEEeCcCCccC
Q 045715          173 LAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+++|+.|++++|+++
T Consensus       161 ~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          161 FQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TSSCTTCCEEECCSSCCS
T ss_pred             ccCCCCCCEEECCCCcCC
Confidence            555666666666666555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.71  E-value=1.4e-16  Score=127.26  Aligned_cols=116  Identities=24%  Similarity=0.265  Sum_probs=95.7

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ..++.|++++|.+..     + +..+..+++|++|++++|++++..+.    .|..+++|++|+|++|++++..+..|..
T Consensus        77 ~~L~~L~Ls~N~l~~-----l-~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQS-----L-PLLGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             TTCCEEECCSSCCSS-----C-CCCTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CcCCEEECCCCcCCc-----C-chhhccCCCCCEEECCCCcCcccCHH----HHcCCCCCCEEECCCCCCCccChhhccc
Confidence            445677777777763     2 44567888999999999999986666    7889999999999999999777777888


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      +++|+.|+|++|++++ +|...|..+++|+.|+|++|+|+  .+|..+|
T Consensus       147 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~  192 (290)
T 1p9a_G          147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY--TIPKGFF  192 (290)
T ss_dssp             CTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC--CCCTTTT
T ss_pred             ccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC--ccChhhc
Confidence            9999999999999987 77766788999999999999998  6777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=5.6e-17  Score=132.50  Aligned_cols=133  Identities=26%  Similarity=0.342  Sum_probs=103.6

Q ss_pred             CCCCCCCCCceEecCCCCCeEEEe---cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchh
Q 045715           46 PSDCCDDWVGVKCSATTRRVMQLS---LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYD  122 (199)
Q Consensus        46 ~~~~c~~w~gv~C~~~~~~v~~l~---l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  122 (199)
                      ...+| .|.++ |+-...+++.+.   .+.+++|++++|.+..     +.+..|.++++|++|++++|.+++..|.    
T Consensus        26 ~~~~C-~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----   94 (353)
T 2z80_A           26 ASLSC-DRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----ISNSDLQRCVNLQALVLTSNGINTIEED----   94 (353)
T ss_dssp             -CCEE-CTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred             cCCCC-CCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-----cCHHHhccCCCCCEEECCCCccCccCHh----
Confidence            34567 89987 764444444442   2467889999998875     5566788899999999999999887676    


Q ss_pred             hccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCc-cC
Q 045715          123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNY-YI  190 (199)
Q Consensus       123 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~-l~  190 (199)
                      .|..+++|++|++++|++++..+..+..+++|++|++++|++++ +|. ..+..+++|++|++++|. ++
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~  163 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFT  163 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCcccc
Confidence            78888999999999999986666668888999999999998887 665 467888888888888884 55

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=2e-16  Score=124.96  Aligned_cols=109  Identities=27%  Similarity=0.329  Sum_probs=63.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++++|++++|.+..     +.+..|..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..+..+
T Consensus        86 ~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           86 NLTYLILTGNQLQS-----LPNGVFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKL  156 (272)
T ss_dssp             TCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECCCCccCc-----cChhHhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccC
Confidence            34566666666553     3344455666666666666666654444    45556666666666666665444455566


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|++++|++++ ++...+..+++|++|++++|+++
T Consensus       157 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          157 TNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCC
Confidence            666666666666665 44334555666666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.4e-16  Score=119.60  Aligned_cols=111  Identities=24%  Similarity=0.281  Sum_probs=98.6

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +..+++|++++|.+..     +++..|..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|.
T Consensus        51 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~  121 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLTQLKELALNTNQLQSLPDGVFD  121 (208)
T ss_dssp             CTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccCcEEECCCCccCc-----cChhhcCCCCCcCEEECCCCcCCccCHh----HhcCccCCCEEEcCCCcCcccCHhHhc
Confidence            4567899999998875     5567788999999999999999986665    689999999999999999977777789


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|++|++++|.+++ ++...+..+++|+.|++++|.+.
T Consensus       122 ~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCee
Confidence            99999999999999998 67656899999999999999987

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.2e-16  Score=124.52  Aligned_cols=109  Identities=26%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .+++|++++|.+..     +++..|..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|..+
T Consensus        86 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  156 (270)
T 2o6q_A           86 NLETLWVTDNKLQA-----LPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDSLTKLTYLSLGYNELQSLPKGVFDKL  156 (270)
T ss_dssp             TCCEEECCSSCCCC-----CCTTTTTTCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECCCCcCCc-----CCHhHcccccCCCEEECCCCccCeeCHH----HhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence            34556666665553     4455677788888888888888886665    67788888888888888886655667788


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|+|++|.+++ ++...|..+++|++|++++|+++
T Consensus       157 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          157 TSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCC
Confidence            888888888888887 55546777888888888888887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.70  E-value=1.9e-16  Score=116.94  Aligned_cols=86  Identities=29%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      +.|++|+|++|.+++..|.    .|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++ +|...|..+++|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence            7788999999999987777    78889999999999999987767778888999999999999988 666568888999


Q ss_pred             CEEeCcCCccC
Q 045715          180 EALDLSSNYYI  190 (199)
Q Consensus       180 ~~L~Ls~N~l~  190 (199)
                      +.|+|++|+++
T Consensus       105 ~~L~L~~N~~~  115 (170)
T 3g39_A          105 THIWLLNNPWD  115 (170)
T ss_dssp             CEEECCSSCBC
T ss_pred             CEEEeCCCCCC
Confidence            99999999887

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=1.8e-16  Score=122.44  Aligned_cols=111  Identities=24%  Similarity=0.257  Sum_probs=99.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +.+++.|+|++|.+..     +++..|..+++|++|+|++|.+++..+.    .|..+++|++|+|++|+++ .+|..+.
T Consensus        63 l~~L~~L~L~~N~l~~-----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~  132 (229)
T 3e6j_A           63 LINLKELYLGSNQLGA-----LPVGVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLVHLKELFMCCNKLT-ELPRGIE  132 (229)
T ss_dssp             CTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred             ccCCcEEECCCCCCCC-----cChhhcccCCCcCEEECCCCcCCccChh----HhCcchhhCeEeccCCccc-ccCcccc
Confidence            3456899999999965     6677789999999999999999997666    7899999999999999999 7888899


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+++|++|+|++|++++ ++...+..+++|+.|++++|+++.
T Consensus       133 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             GCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             cCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999999999999998 776579999999999999999973

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=9e-17  Score=138.02  Aligned_cols=130  Identities=25%  Similarity=0.360  Sum_probs=104.3

Q ss_pred             CCCCCCceEecCCCCCeEEEe---cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc
Q 045715           49 CCDDWVGVKCSATTRRVMQLS---LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG  125 (199)
Q Consensus        49 ~c~~w~gv~C~~~~~~v~~l~---l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  125 (199)
                      .| .|.|+ |+.....++++.   .+.+++|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|.
T Consensus         3 ~C-~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~   71 (549)
T 2z81_A            3 SC-DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-----IGHGDLRACANLQVLILKSSRINTIEGD----AFY   71 (549)
T ss_dssp             EE-CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-----ECSSTTSSCTTCCEEECTTSCCCEECTT----TTT
T ss_pred             cC-CCCce-EECCCCccccccccCCCCccEEECcCCccCc-----cChhhhhcCCcccEEECCCCCcCccChh----hcc
Confidence            37 89998 875433443332   3577899999998875     5567788899999999999999987777    888


Q ss_pred             CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715          126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       126 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|++|++++|++++..+..|+.+++|++|++++|.+++ .+|. .+.++++|++|++++|.+.
T Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~  136 (549)
T 2z81_A           72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETF  136 (549)
T ss_dssp             TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSC
T ss_pred             ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccc
Confidence            99999999999999998777779999999999999999886 2454 6888888999999888843

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=6.1e-17  Score=141.14  Aligned_cols=109  Identities=22%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      ++.|++++|.+..     +.+..|..+++|++|+|++|.+++..|.    .|+.+++|++|+|++|.+++..+..|+.++
T Consensus        77 L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  147 (597)
T 3oja_B           77 VELLNLNDLQIEE-----IDTYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTP  147 (597)
T ss_dssp             CSEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcEEECCCCCCCC-----CChHHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence            3455555555543     3444566666666666666666665554    566666666666666666644444456666


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +|++|+|++|.+++ +++..|..+++|++|++++|.+++
T Consensus       148 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          148 KLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCC
Confidence            66666666666666 333356666667777777666663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=4.3e-16  Score=123.05  Aligned_cols=109  Identities=29%  Similarity=0.269  Sum_probs=97.9

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +++++.|++++|.+..       ...+..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|.
T Consensus        62 l~~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~  130 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-------ISALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFD  130 (272)
T ss_dssp             CTTCCEEECTTSCCCC-------CGGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CCCCcEEECCCCCCCC-------chhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhc
Confidence            6678899999998875       34678999999999999999997766    789999999999999999987777899


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus       131 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          131 KLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECCCCccCc-cCHHHhccCccCCEEECCCCCcC
Confidence            99999999999999998 66657899999999999999999

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=2.1e-16  Score=124.85  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++++|++++|.+..     +.+..|..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..+..+
T Consensus        53 ~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  123 (276)
T 2z62_A           53 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL  123 (276)
T ss_dssp             TCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             CCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChh----hhcCCccccEEECCCCCccccCchhcccC
Confidence            34566666665543     3444566666777777777776665555    66667777777777777765555456667


Q ss_pred             CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|++++|.+++ .+|. .+..+++|++|++++|+++
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCC
Confidence            777777777777765 2344 5667777777777777776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=2.2e-16  Score=129.62  Aligned_cols=113  Identities=28%  Similarity=0.286  Sum_probs=100.6

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      .+.+++.|+|++|.+..     +.+..|..+++|++|+|++|+++...+.    .|..+++|++|+|++|++++..+..|
T Consensus        62 ~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEF----LFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             CCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHH----HhCCCcCCCEEECCCCcccEECHHHh
Confidence            56778999999999986     6677899999999999999999997776    79999999999999999998888899


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhc---cCCCCCCEEeCcCCccCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGL---AKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~---~~l~~L~~L~Ls~N~l~~  191 (199)
                      ..+++|+.|+|++|.+++ +|...|   ..+++|+.|+|++|+|++
T Consensus       133 ~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             TTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            999999999999999998 887555   579999999999999993

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.5e-17  Score=148.11  Aligned_cols=104  Identities=19%  Similarity=0.218  Sum_probs=74.9

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      ++.|+|++|.+..     ++.. +..+++|++|+|++|.|+ .+|.    .|..+++|++|+|++|+|+ .+|..|+.++
T Consensus       226 L~~L~Ls~n~l~~-----l~~~-~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          226 WHALDLSNLQIFN-----ISAN-IFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             CCEEECTTSCCSC-----CCGG-GGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             CcEEECCCCCCCC-----CChh-hcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            3556666666653     3333 336777777777777777 4666    7777788888888888877 5677777778


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|+|++|.|+. +|. .|+.+++|++|+|++|+|+
T Consensus       294 ~L~~L~L~~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          294 QLKYFYFFDNMVTT-LPW-EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TCSEEECCSSCCCC-CCS-STTSCTTCCCEECTTSCCC
T ss_pred             CCCEEECCCCCCCc-cCh-hhhcCCCccEEeCCCCccC
Confidence            88888888887775 776 5777888888888888777

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=4.6e-16  Score=115.39  Aligned_cols=104  Identities=24%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.+++++|.+..     ++. .+  .+.|++|+|++|.+++..|.    .|..+++|++|+|++|++++..+..|..+++
T Consensus        15 ~~l~~~~n~l~~-----iP~-~~--~~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLAS-----VPA-GI--PTDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSS-----CCS-CC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCc-----cCC-Cc--CCCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            345666666654     333 22  27899999999999998787    8999999999999999999766667889999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |++|+|++|+|++ +|...|..+++|++|+|++|++.
T Consensus        83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCcc
Confidence            9999999999998 77656999999999999999998

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.67  E-value=7.3e-16  Score=122.23  Aligned_cols=92  Identities=25%  Similarity=0.261  Sum_probs=44.6

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ..|..+++|++|++++|.+++..|.    .+..+++|++|++++|++++..+..|+.+++|++|+|++|++++ ++...+
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~  173 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAF  173 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHh
Confidence            3344444444444444444443333    44445555555555555544333444455555555555555544 333234


Q ss_pred             cCCCCCCEEeCcCCccC
Q 045715          174 AKLKNLEALDLSSNYYI  190 (199)
Q Consensus       174 ~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|+.|++++|+++
T Consensus       174 ~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             cCccccCEEECCCCccc
Confidence            45555555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=8.5e-16  Score=122.71  Aligned_cols=113  Identities=23%  Similarity=0.208  Sum_probs=87.8

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .++.|++++|.+..     +..  ...+++|++|++++|.++. +|.    .+..+++|++|++++|++++..+..|..+
T Consensus        56 ~L~~L~L~~n~l~~-----~~~--~~~l~~L~~L~Ls~N~l~~-l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l  123 (290)
T 1p9a_G           56 RLTQLNLDRAELTK-----LQV--DGTLPVLGTLDLSHNQLQS-LPL----LGQTLPALTVLDVSFNRLTSLPLGALRGL  123 (290)
T ss_dssp             TCCEEECTTSCCCE-----EEC--CSCCTTCCEEECCSSCCSS-CCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTC
T ss_pred             CCCEEECCCCccCc-----ccC--CCCCCcCCEEECCCCcCCc-Cch----hhccCCCCCEEECCCCcCcccCHHHHcCC
Confidence            34556666666554     212  2567778888888888875 566    78889999999999999997777889999


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      ++|++|+|++|++++ +|...|..+++|+.|+|++|+|+  .+|..+|
T Consensus       124 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~  168 (290)
T 1p9a_G          124 GELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT--ELPAGLL  168 (290)
T ss_dssp             TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCS--CCCTTTT
T ss_pred             CCCCEEECCCCCCCc-cChhhcccccCCCEEECCCCcCC--ccCHHHh
Confidence            999999999999998 67667888999999999999998  5665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=5.6e-16  Score=134.64  Aligned_cols=93  Identities=26%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC-ccchh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG-SRTKQ  171 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~  171 (199)
                      +..|.++++|++|++++|.+++..|.    .|..+++|++|++++|++++..+..++.+++|++|++++|.+++ .+|. 
T Consensus        73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-  147 (606)
T 3vq2_A           73 DKAWHGLHHLSNLILTGNPIQSFSPG----SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-  147 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCCCCTT----SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-
T ss_pred             HHHhhchhhcCEeECCCCcccccChh----hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-
Confidence            34444455555555555555544444    45555555555555555544333445555555555555555543 2343 


Q ss_pred             hccCCCCCCEEeCcCCccC
Q 045715          172 GLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       172 ~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .++++++|++|++++|+++
T Consensus       148 ~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          148 YFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             GGGTCTTCCEEECCSSCCC
T ss_pred             hHhhcCCCCEEEccCCcce
Confidence            4555555555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=1.1e-15  Score=115.10  Aligned_cols=109  Identities=23%  Similarity=0.245  Sum_probs=92.1

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.+++++|.+..     ++.. +  .+.|++|++++|.++. +|.    .|..+++|++|+|++|++++..+..|..+++
T Consensus        13 ~~l~~~~~~l~~-----ip~~-~--~~~l~~L~L~~n~i~~-ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLKV-----LPKG-I--PRDVTELYLDGNQFTL-VPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCSS-----CCSC-C--CTTCCEEECCSSCCCS-CCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEcCCCCCCc-----CCCC-C--CCCCCEEECCCCcCch-hHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            356666677764     4332 2  3689999999999996 677    8999999999999999999888888999999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      |++|+|++|.+++ +++..|..+++|++|+|++|+|+  .+|...
T Consensus        80 L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N~l~--~~~~~~  121 (193)
T 2wfh_A           80 LLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS--VVPEGA  121 (193)
T ss_dssp             CCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCCC--BCCTTT
T ss_pred             CCEEECCCCccCE-eCHHHhCCCCCCCEEECCCCCCC--eeChhh
Confidence            9999999999999 66658999999999999999999  566543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=1.1e-15  Score=121.32  Aligned_cols=107  Identities=22%  Similarity=0.252  Sum_probs=68.7

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      ++|++++|.+..     +.+..|..+++|++|++++|. ++...|.    .|..+++|++|++++|++++..+..+..++
T Consensus        59 ~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  129 (285)
T 1ozn_A           59 TILWLHSNVLAR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (285)
T ss_dssp             CEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CEEECCCCccce-----eCHhhcCCccCCCEEeCCCCCCccccCHH----HhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence            455555555543     334556666666666666665 5554455    666667777777777777665566666677


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|++++|.+++ ++...+..+++|+.|++++|+++
T Consensus       130 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          130 ALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcccc-cCHhHhccCCCccEEECCCCccc
Confidence            77777777777766 45435666777777777777776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=1.1e-15  Score=128.34  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|..+++|++|++++|++++..|..|..+++
T Consensus       302 ~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          302 EQLTLAQNEINK-----IDDNAFWGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             CEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEEECCCCcccc-----cChhHhcCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhcccccc
Confidence            444444444433     3344455556666666666666554444    5556666666666666666555555666666


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |++|+|++|++++ +|...+..+++|+.|++++|+++
T Consensus       373 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          373 LKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcc
Confidence            6666666666665 44434556666666666666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=6.8e-16  Score=111.09  Aligned_cols=110  Identities=27%  Similarity=0.266  Sum_probs=91.9

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ++++.|++++|.+....   + +..+..+++|++|++++|.+++.  .    .+..+++|++|++++|++++.+|..+..
T Consensus        17 ~~l~~L~l~~n~l~~~~---~-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGK---L-EGLTDEFEELEFLSTINVGLTSI--A----NLPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCBTTB---C-CSCCTTCTTCCEEECTTSCCCCC--T----TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             ccCeEEEccCCcCChhH---H-HHHHhhcCCCcEEECcCCCCCCc--h----hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence            45677888888876211   2 45678899999999999999985  4    8899999999999999999878888888


Q ss_pred             CCCCCEEecCCCcCCCccc-hhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRT-KQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip-~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|++++|.+++ ++ ...+..+++|++|++++|++++
T Consensus        87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccc
Confidence            9999999999999988 43 1378899999999999999983

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=8.7e-16  Score=115.48  Aligned_cols=111  Identities=20%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.+++++|.++.     ++. .+  ...|++|++++|.+++..+..   .|..+++|++|+|++|++++..|..|..+++
T Consensus        11 ~~l~~s~~~l~~-----ip~-~~--~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKE-----IPR-DI--PLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSS-----CCS-CC--CTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCc-----Ccc-CC--CCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            456777777754     433 22  238999999999999865530   3889999999999999999888999999999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      |++|+|++|++++ ++...|.++++|++|+|++|+|++ .+|+.
T Consensus        80 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~  121 (192)
T 1w8a_A           80 IQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC-VMPGS  121 (192)
T ss_dssp             CCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCE-ECTTS
T ss_pred             CCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCe-eCHHH
Confidence            9999999999999 555579999999999999999993 33443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=4.5e-16  Score=139.30  Aligned_cols=114  Identities=23%  Similarity=0.299  Sum_probs=86.9

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.|++++|.+..     ..+..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++.+|..++.+++
T Consensus       445 ~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  515 (768)
T 3rgz_A          445 RDLKLWLNMLEG-----EIPQELMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWIGRLEN  515 (768)
T ss_dssp             CEEECCSSCCCS-----CCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             CEEECCCCcccC-----cCCHHHcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence            444555554443     2355566777888888888888877777    7888888888888888888888888888888


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      |++|+|++|++++.+|. .+..+++|+.|++++|+++ +.+|..+
T Consensus       516 L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-g~ip~~~  558 (768)
T 3rgz_A          516 LAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFN-GTIPAAM  558 (768)
T ss_dssp             CCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEE-SBCCGGG
T ss_pred             CCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccC-CcCChHH
Confidence            88888888888877776 7888888888888888887 5667654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=9.7e-16  Score=128.70  Aligned_cols=117  Identities=28%  Similarity=0.354  Sum_probs=104.0

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ...++.|++++|.+..     +.+..+..+++|++|++++|.+++..|.    .|..+++|++|++++|++++..|..|.
T Consensus       274 ~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~  344 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFA-----LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFE  344 (455)
T ss_dssp             TSCCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred             ccCceEEEecCccccc-----cchhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhc
Confidence            4578899999999876     5577889999999999999999998887    899999999999999999988889999


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      .+++|++|+|++|++++..| ..+..+++|++|++++|+|+  .+|...
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~--~~~~~~  390 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLK--SVPDGI  390 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCS--CCCTTT
T ss_pred             CcccCCEEECCCCcccccCh-hhccccccccEEECCCCccc--cCCHhH
Confidence            99999999999999998445 48999999999999999999  455443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.65  E-value=4.9e-16  Score=126.13  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=95.1

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +..++.|++++|.+..     + +..+..+++|++|++++|.+++ +|.    .+..+++|++|++++|++.+.+|..++
T Consensus       182 l~~L~~L~L~~n~l~~-----l-p~~l~~l~~L~~L~L~~N~l~~-l~~----~l~~l~~L~~L~Ls~n~~~~~~p~~~~  250 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRS-----L-PASIANLQNLKSLKIRNSPLSA-LGP----AIHHLPKLEELDLRGCTALRNYPPIFG  250 (328)
T ss_dssp             STTCCEEEEEEECCCC-----C-CGGGGGCTTCCEEEEESSCCCC-CCG----GGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred             CCCCCEEECcCCCcCc-----c-hHhhcCCCCCCEEEccCCCCCc-Cch----hhccCCCCCEEECcCCcchhhhHHHhc
Confidence            5566777777777652     3 4457788899999999999987 666    788899999999999999888888899


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      .+++|++|+|++|.+.+.+|. .+.++++|+.|+|++|++. +.+|..+
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~-~~iP~~l  297 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNL-SRLPSLI  297 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTTC-CCCCGGG
T ss_pred             CCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCch-hhccHHH
Confidence            999999999999888887886 7889999999999998887 5677654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.65  E-value=6.8e-16  Score=134.11  Aligned_cols=134  Identities=23%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             CCceEecCCCCCeEEEe-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715           53 WVGVKCSATTRRVMQLS-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK  131 (199)
Q Consensus        53 w~gv~C~~~~~~v~~l~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  131 (199)
                      +..+.|.+.......-. -..++.|++++|.++.     +.+..|.++++|++|++++|.+++..|.    .|..+++|+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~   84 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPT-----IQNTTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLD   84 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSE-----ECTTTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCc-----CChhHhccCccceEEECCCCccceeChh----hccCccccC
Confidence            45677865321111111 2356888888888875     5577788888899999999988887777    888888899


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      +|++++|++++..|..|+.+++|++|++++|.+++ ++...+.++++|++|++++|++++..+|.
T Consensus        85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (606)
T 3t6q_A           85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK  148 (606)
T ss_dssp             EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred             eeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc
Confidence            99999888887778888888888888888888888 54347888888888888888888555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=6.2e-16  Score=134.17  Aligned_cols=110  Identities=23%  Similarity=0.211  Sum_probs=98.4

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++++|+|++|.++.     +++..|.++++|++|+|++|++++..+.    .|.++++|++|+|++|++++..+..|+.+
T Consensus        77 ~L~~L~Ls~N~i~~-----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L  147 (635)
T 4g8a_A           77 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL  147 (635)
T ss_dssp             TCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECGG----GGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             CCCEEECCCCcCCC-----cChhHhcCCCCCCEEEccCCcCCCCCHH----HhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence            44899999999986     7788899999999999999999997666    89999999999999999997777789999


Q ss_pred             CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715          152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      ++|++|+|++|.+++ .+|. .+..+++|++|++++|+|++
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred             cccCeeccccCccccCCCch-hhccchhhhhhcccCccccc
Confidence            999999999999986 2454 78899999999999999983

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=1.3e-15  Score=128.34  Aligned_cols=124  Identities=25%  Similarity=0.248  Sum_probs=76.5

Q ss_pred             CCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715           53 WVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK  131 (199)
Q Consensus        53 w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  131 (199)
                      |..|.|.+.... +..--.++++.|+|++|.+..     +.+..|.++++|++|+|++|.+++..+.    .|..+++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM-----IQADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCce-----ECHHHcCCCCCCCEEECCCCccCCcChh----hccCcccCC
Confidence            567888753211 111112456777777777765     4456667777777777777777776555    677777777


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715          132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS  186 (199)
Q Consensus       132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~  186 (199)
                      +|+|++|+++...+..|..+++|++|+|++|+++. +|...|.++++|+.|++++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCC
Confidence            77777777775555556667777777777776665 4443444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=128.31  Aligned_cols=129  Identities=24%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             CCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715           52 DWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL  130 (199)
Q Consensus        52 ~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L  130 (199)
                      .|..|.|...... +..--...++.|+|++|.+..     +.+..|..+++|++|+|++|.+++..|.    .|..+++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L   82 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-----LNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNL   82 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-----ECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccC
Confidence            4678888753211 111112456777888777765     4456677777777777777777776666    67777777


Q ss_pred             CEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          131 KMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       131 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+|++|+++...+..|..+++|++|+|++|.+++..+ ..|..+++|+.|++++|.++
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~  141 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLV  141 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCC
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccc
Confidence            777777777775545556677777777777777766333 35666666777776666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.63  E-value=1.4e-15  Score=120.16  Aligned_cols=114  Identities=26%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .+++|++++|.+..     +.+..|..+++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|..+
T Consensus        29 ~l~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           29 STKNLDLSFNPLRH-----LGSYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TCCEEECTTCCCCE-----ECTTTTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CccEEECCCCcccc-----cCHhHhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCC
Confidence            35556666665554     3344555566666666666666654444    55566666666666666655555556666


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLE  195 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip  195 (199)
                      ++|++|++++|.+++ ++...+..+++|++|++++|.+++..+|
T Consensus       100 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~  142 (276)
T 2z62_A          100 SSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLP  142 (276)
T ss_dssp             TTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             ccccEEECCCCCccc-cCchhcccCCCCCEEECcCCccceecCc
Confidence            666666666666655 3333455666666666666666543344

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1e-15  Score=112.35  Aligned_cols=113  Identities=20%  Similarity=0.159  Sum_probs=86.9

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~  148 (199)
                      +.+++.|++++|.+..     +  ..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++.. +..+
T Consensus        48 l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~l  116 (168)
T 2ell_A           48 FVNLEFLSLINVGLIS-----V--SNLPKLPKLKKLELSENRIFGGLDM----LAEKLPNLTHLNLSGNKLKDISTLEPL  116 (168)
T ss_dssp             GGGCCEEEEESSCCCC-----C--SSCCCCSSCCEEEEESCCCCSCCCH----HHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred             CCCCCEEeCcCCCCCC-----h--hhhccCCCCCEEECcCCcCchHHHH----HHhhCCCCCEEeccCCccCcchhHHHH
Confidence            5667788888888765     2  5677788888888888888886666    6667888888888888887532 2677


Q ss_pred             cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      ..+++|+.|++++|.+++ +|.   ..+..+++|+.|++++|.+.  .+|.
T Consensus       117 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~  164 (168)
T 2ell_A          117 KKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ--EAPD  164 (168)
T ss_dssp             SSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC--BCCS
T ss_pred             hcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh--hccc
Confidence            888888888888888887 553   36788888888888888887  5554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=5.1e-15  Score=109.55  Aligned_cols=110  Identities=24%  Similarity=0.261  Sum_probs=90.0

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.++++.|.+..     ++..   -.++|++|++++|.+++..+.    .|..+++|++|++++|++++..+..|..+++
T Consensus        10 ~~l~~~~~~l~~-----~p~~---~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A           10 TEIRCNSKGLTS-----VPTG---IPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TEEECCSSCCSS-----CCTT---CCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCCcc-----CCCC---CCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCc
Confidence            345555565654     3222   247899999999999986665    7899999999999999999777777899999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      |++|++++|.+++ +|...+..+++|+.|++++|+++  .+|..+
T Consensus        78 L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~  119 (177)
T 2o6r_A           78 LTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK--SVPDGI  119 (177)
T ss_dssp             CCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCS--CCCTTT
T ss_pred             cCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcce--EeCHHH
Confidence            9999999999998 66657899999999999999999  455544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=1.7e-15  Score=121.17  Aligned_cols=92  Identities=26%  Similarity=0.354  Sum_probs=62.8

Q ss_pred             cccCCCCCCcEEECCCCccCc-cccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           94 SLFHPFEELQRLDLPMNWFTG-IYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ..+..+++|++|++++|.+++ ..|.    .+..+++|++|++++|++++..|..+..+++|++|+|++|.+++ ++...
T Consensus       144 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~  218 (306)
T 2z66_A          144 GIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFP  218 (306)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGG
T ss_pred             hhcccCcCCCEEECCCCccccccchh----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhh
Confidence            345556666666666666655 3455    66677777777777777776666677777777777777777776 44435


Q ss_pred             ccCCCCCCEEeCcCCccC
Q 045715          173 LAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+++|+.|++++|+++
T Consensus       219 ~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             GTTCTTCCEEECTTSCCC
T ss_pred             ccCcccCCEeECCCCCCc
Confidence            677777777777777776

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=7.4e-16  Score=113.08  Aligned_cols=110  Identities=23%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +.++.|++++|.+....   + +..+..+++|++|++++|.+++.  .    .+..+++|++|++++|++++.+|..+..
T Consensus        24 ~~L~~L~l~~n~l~~~~---i-~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGK---I-EGLTAEFVNLEFLSLINVGLISV--S----NLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCBTTB---C-SSCCGGGGGCCEEEEESSCCCCC--S----SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECCCCCCChhh---H-HHHHHhCCCCCEEeCcCCCCCCh--h----hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            56788888888886211   2 45578899999999999999985  5    8999999999999999999878888888


Q ss_pred             CCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|+|++|.+++ +|. ..+..+++|++|++++|++++
T Consensus        94 l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             CTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             CCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc
Confidence            9999999999999998 552 378999999999999999983

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.63  E-value=4.5e-16  Score=120.54  Aligned_cols=114  Identities=17%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCCCCCCEEEcCC-CCCCCCChhhhc
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSLRQLKMLNLGN-NDFNDNILPYLN  149 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~  149 (199)
                      .++.|++++|.++.     +++..|..+++|++|++++|. ++...+.    .|..+++|++|++++ |++++..+..|.
T Consensus        32 ~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           32 STQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLESH----SFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             TCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEECTT----TEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             cccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeCHh----HcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            45556666655553     333444555555555555554 4443333    444455555555554 454433333444


Q ss_pred             CCCCCC-------------------------EEecCCC-cCCCccchhhccCCCCCC-EEeCcCCccCCCCcCCC
Q 045715          150 TLTSLT-------------------------TLNLRYN-SIEGSRTKQGLAKLKNLE-ALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       150 ~l~~L~-------------------------~L~Ls~N-~l~~~ip~~~~~~l~~L~-~L~Ls~N~l~~~~ip~~  197 (199)
                      .+++|+                         +|++++| .+++ +|...|..+++|+ .|++++|+++  .+|..
T Consensus       103 ~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~  174 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGFT--SVQGY  174 (239)
T ss_dssp             CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCCC--EECTT
T ss_pred             CCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCCc--ccCHh
Confidence            444444                         5555555 4544 4443455566666 6666666665  44443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.63  E-value=3.1e-16  Score=126.41  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=76.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      .++++|++++|.+..     ..+..|..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++.+|..+..
T Consensus       101 ~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~  171 (313)
T 1ogq_A          101 TQLHYLYITHTNVSG-----AIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGS  171 (313)
T ss_dssp             TTCSEEEEEEECCEE-----ECCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred             CCCCEEECcCCeeCC-----cCCHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence            345788888888863     3355677788888888888888777776    7777778888888888877777777777


Q ss_pred             CC-CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LT-SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++ +|++|++++|.+++.+|. .+..++ |+.|++++|+++
T Consensus       172 l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          172 FSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCSSEEE
T ss_pred             hhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcCCccc
Confidence            76 777777777777654554 454444 555555555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=3.2e-15  Score=129.88  Aligned_cols=118  Identities=25%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +.++.|++++|.+..     +.+..|.++++|++|++++|.+++..|.    .|..+++|++|+|++|++++..|..|++
T Consensus        32 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI-----LKSYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCcCEEECCCCCcCE-----eChhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCC
Confidence            567899999999976     6677899999999999999999997787    8999999999999999999888999999


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      +++|++|+|++|.+++ ++...++++++|++|++++|.++++.+|..|
T Consensus       103 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~  149 (606)
T 3vq2_A          103 LTSLENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYF  149 (606)
T ss_dssp             CTTCCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             cccCCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccceechHhH
Confidence            9999999999999998 6644799999999999999999976777644

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=4e-15  Score=120.51  Aligned_cols=128  Identities=27%  Similarity=0.337  Sum_probs=100.8

Q ss_pred             CCCCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715           50 CDDWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR  128 (199)
Q Consensus        50 c~~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  128 (199)
                      | .|..+.|...... +..--.+.++.|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|..++
T Consensus        33 c-~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~  102 (332)
T 2ft3_A           33 C-HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-----LRKDDFKGLQHLYALVLVNNKISKIHEK----AFSPLR  102 (332)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECGG----GSTTCT
T ss_pred             c-cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-----cCHhHhhCCCCCcEEECCCCccCccCHh----HhhCcC
Confidence            5 7999999753211 111123577899999998875     5567788999999999999999987787    899999


Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +|++|++++|+++ .+|..+.  ++|++|++++|.+++ +|...+.++++|+.|++++|.++.
T Consensus       103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcccc
Confidence            9999999999998 4555444  788999999999887 666568888899999998888863

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=2.3e-15  Score=113.45  Aligned_cols=106  Identities=20%  Similarity=0.272  Sum_probs=60.3

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      .+++.|++++|.+..       ...+..+++|++|++++|.+++..+.    .+..+++|++|++++|++++..+..+..
T Consensus        66 ~~L~~L~l~~n~~~~-------~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           66 HNIKDLTINNIHATN-------YNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             TTCSEEEEESCCCSC-------CGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             CCCCEEEccCCCCCc-------chhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            345556666664433       22445566666666666666554454    5556666666666666665555555666


Q ss_pred             CCCCCEEecCCCc-CCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LTSLTTLNLRYNS-IEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|++|++++|. ++. +|  .+..+++|+.|++++|+++
T Consensus       135 l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCC
T ss_pred             CCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCc
Confidence            6666666666665 443 43  3555666666666666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.61  E-value=4.6e-15  Score=124.61  Aligned_cols=124  Identities=25%  Similarity=0.288  Sum_probs=67.9

Q ss_pred             CCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715           53 WVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK  131 (199)
Q Consensus        53 w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  131 (199)
                      |..|.|.+.... +..--...++.|+|++|.+..     +.+..|.++++|++|+|++|.+++..+.    .|..+++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI-----IKVNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE-----ECTTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe-----eCHHHhhCCCCCCEEECCCCcCCccChh----hccCCccCC
Confidence            567888653211 111112345666777776654     4445566666666666666666665444    566666666


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715          132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS  186 (199)
Q Consensus       132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~  186 (199)
                      +|+|++|+++...+..|..+++|++|+|++|.++. ++...|..+++|+.|++++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCC
Confidence            66666666664444455666666666666665554 3333344444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-15  Score=122.31  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=80.5

Q ss_pred             CCCCCceEecCCCCC-eEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc-------------
Q 045715           50 CDDWVGVKCSATTRR-VMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI-------------  115 (199)
Q Consensus        50 c~~w~gv~C~~~~~~-v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------------  115 (199)
                      | .|.+|.|.....+ +..-..++++.|++++|.+..     ++...|..+++|++|++++|.++..             
T Consensus         7 C-~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            7 C-SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-----LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             E-ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             e-CCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-----cCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            6 8999999763211 111112456677777776654     4444455666666666666665532             


Q ss_pred             ------------ccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEE
Q 045715          116 ------------YENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL  182 (199)
Q Consensus       116 ------------~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  182 (199)
                                  +|.    .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus        81 ~~L~Ls~n~i~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L  155 (306)
T 2z66_A           81 KYLDLSFNGVITMSS----NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVL  155 (306)
T ss_dssp             CEEECCSCSEEEEEE----EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEE
T ss_pred             CEEECCCCccccChh----hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEE
Confidence                        232    45566666666666666654333 356666777777777777766333 356677777777


Q ss_pred             eCcCCccCCCCcCC
Q 045715          183 DLSSNYYIHGSLEG  196 (199)
Q Consensus       183 ~Ls~N~l~~~~ip~  196 (199)
                      ++++|.+++..+|.
T Consensus       156 ~l~~n~l~~~~~~~  169 (306)
T 2z66_A          156 KMAGNSFQENFLPD  169 (306)
T ss_dssp             ECTTCEEGGGEECS
T ss_pred             ECCCCccccccchh
Confidence            77777776323443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=129.06  Aligned_cols=109  Identities=23%  Similarity=0.213  Sum_probs=69.8

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++++|++++|.+..     +.+..|.++++|++|++++|.+++..|.    .|..+++|++|++++|++++..+..++.+
T Consensus        53 ~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           53 ELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             SCCEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             CceEEECCCCcCCc-----cCcccccCchhCCEEeCcCCcCCccCHh----hhcCccccccccccccccccCCCcccccc
Confidence            34566666665554     4455566666677777777666665555    66666777777777776664444456667


Q ss_pred             CCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|++++|.+++ .+|. .+.++++|++|++++|+++
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred             ccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc
Confidence            777777777777665 2454 5666777777777777766

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.61  E-value=4.3e-15  Score=130.76  Aligned_cols=110  Identities=30%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ..++.|++++|.+..     +.+..|.++++|++|++++|.+++..|.    .|..+++|++|+|++|++++..+..|+.
T Consensus        25 ~~l~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-----LPAANFTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCC-----CCGGGGGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCC-----cCHHHHhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhcc
Confidence            355666666666654     4444556666666666666666665555    5556666666666666665433334556


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|++|+|++|.+++ +++..|.++++|++|++++|.++
T Consensus        96 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A           96 CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             CTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCccc
Confidence            6666666666666655 44334555666666666666555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.60  E-value=1.2e-14  Score=120.17  Aligned_cols=141  Identities=17%  Similarity=0.199  Sum_probs=108.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCceEecCCC-----------CCeEEEecCCccceeccCCCccccccccccccccCCCCCCc
Q 045715           35 LPSWVGEDDGMPSDCCDDWVGVKCSATT-----------RRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQ  103 (199)
Q Consensus        35 ~~~W~~~~~~~~~~~c~~w~gv~C~~~~-----------~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~  103 (199)
                      +++|..     ..+||..|.+..|....           .....+.+.+++.+++++|.+..     +++..|..+++|+
T Consensus         3 ~~~~~~-----~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~-----l~~~~~~~l~~L~   72 (390)
T 3o6n_A            3 VKPRQP-----EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----LPAALLDSFRQVE   72 (390)
T ss_dssp             ----CC-----EECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESE-----ECTHHHHHCCCCS
T ss_pred             cCCCCC-----ccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhh-----CChhHhcccccCc
Confidence            566776     56777445544442111           11224467888999999998876     6666788899999


Q ss_pred             EEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEe
Q 045715          104 RLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALD  183 (199)
Q Consensus       104 ~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~  183 (199)
                      +|++++|.+++..+.    .|..+++|++|++++|++++..|..|+.+++|++|+|++|.++. +|...|.++++|++|+
T Consensus        73 ~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             EEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcEEE
Confidence            999999999987777    89999999999999999998888889999999999999999997 8875678999999999


Q ss_pred             CcCCccC
Q 045715          184 LSSNYYI  190 (199)
Q Consensus       184 Ls~N~l~  190 (199)
                      +++|+++
T Consensus       148 L~~n~l~  154 (390)
T 3o6n_A          148 MSNNNLE  154 (390)
T ss_dssp             CCSSCCC
T ss_pred             CCCCccC
Confidence            9999998

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=3.9e-15  Score=119.80  Aligned_cols=118  Identities=17%  Similarity=0.129  Sum_probs=82.8

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc--ccccchhhc--cCCCCCCEEEcCCCCCCC--CC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI--YENRAYDSF--GSLRQLKMLNLGNNDFND--NI  144 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~  144 (199)
                      +++++|++++|.+..     +.+..|..+++|++|++++|++.+.  .+.    .+  ..+++|++|++++|++++  .+
T Consensus       149 ~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~  219 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN-----FSCEQVRVFPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGV  219 (312)
T ss_dssp             TTCCEEEEESCSCCC-----CCTTTCCCCSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred             CCCcEEEeeCCCCcc-----chHHHhccCCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHH
Confidence            566777777777755     5556777888888888888887764  222    33  677888888888888873  12


Q ss_pred             h-hhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          145 L-PYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       145 p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      + ..+..+++|++|+|++|++++..|...+..+++|+.|+|++|+|+  .+|..+|
T Consensus       220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~  273 (312)
T 1wwl_A          220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP  273 (312)
T ss_dssp             HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC
T ss_pred             HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc
Confidence            2 234577888888888888887544335666788888888888887  6676553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=7.8e-15  Score=110.50  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=91.6

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~  148 (199)
                      ++.+++|++++|.+..     ..+..+..+++|++|++++|.+++..+.    .+..+++|++|++++|+ ++ .++ .+
T Consensus        87 l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~i~~~~~~----~l~~l~~L~~L~L~~n~~i~-~~~-~l  155 (197)
T 4ezg_A           87 LSNLERLRIMGKDVTS-----DKIPNLSGLTSLTLLDISHSAHDDSILT----KINTLPKVNSIDLSYNGAIT-DIM-PL  155 (197)
T ss_dssp             CTTCCEEEEECTTCBG-----GGSCCCTTCTTCCEEECCSSBCBGGGHH----HHTTCSSCCEEECCSCTBCC-CCG-GG
T ss_pred             CCCCCEEEeECCccCc-----ccChhhcCCCCCCEEEecCCccCcHhHH----HHhhCCCCCEEEccCCCCcc-ccH-hh
Confidence            4567899999999875     3356788999999999999999987777    89999999999999998 65 555 68


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      ..+++|+.|++++|.+++ ++  .+..+++|+.|++++|+|.+
T Consensus       156 ~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          156 KTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC----
T ss_pred             cCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCcccCC
Confidence            999999999999999998 66  58899999999999999873

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=7.2e-15  Score=108.77  Aligned_cols=105  Identities=24%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChh--hhc
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILP--YLN  149 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~  149 (199)
                      .++.|++++|.+..     +  ..+..+++|++|++++|.+++..+.    .+..+++|++|++++|+++ .+|.  .+.
T Consensus        43 ~L~~L~Ls~N~l~~-----~--~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~-~~~~~~~l~  110 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-----L--DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLV-ELGDLDPLA  110 (176)
T ss_dssp             CCSEEECCSSCCCE-----E--CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             CCCEEECCCCCCCc-----c--cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence            34445555554443     1  2344455555555555555543222    3344555555555555553 2333  444


Q ss_pred             CCCCCCEEecCCCcCCCccchh---hccCCCCCCEEeCcCCcc
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQ---GLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~Ls~N~l  189 (199)
                      .+++|+.|++++|.++. +|..   .+..+++|+.|+++.|.+
T Consensus       111 ~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555555555555543 3431   144455555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.59  E-value=1.4e-15  Score=117.74  Aligned_cols=95  Identities=15%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCC---EEEcCCC-CCCCCChhhhcCCCCCC-EEecCCCcCCCcc
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK---MLNLGNN-DFNDNILPYLNTLTSLT-TLNLRYNSIEGSR  168 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~i  168 (199)
                      ..|..+++|++|++++|.+++ +|     .|..+++|+   +|++++| ++++..+..|..+++|+ .|++++|.++. +
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp-----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i  171 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FP-----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-V  171 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CC-----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-E
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-cc-----ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-c
Confidence            334444555555555555444 33     244455555   6666666 67655556688899999 99999999996 8


Q ss_pred             chhhccCCCCCCEEeCcCCc-cCCCCcCCCC
Q 045715          169 TKQGLAKLKNLEALDLSSNY-YIHGSLEGNF  198 (199)
Q Consensus       169 p~~~~~~l~~L~~L~Ls~N~-l~~~~ip~~~  198 (199)
                      |...+.. ++|+.|++++|+ ++  .+|...
T Consensus       172 ~~~~~~~-~~L~~L~L~~n~~l~--~i~~~~  199 (239)
T 2xwt_C          172 QGYAFNG-TKLDAVYLNKNKYLT--VIDKDA  199 (239)
T ss_dssp             CTTTTTT-CEEEEEECTTCTTCC--EECTTT
T ss_pred             CHhhcCC-CCCCEEEcCCCCCcc--cCCHHH
Confidence            8755555 899999999995 98  555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.1e-14  Score=126.76  Aligned_cols=143  Identities=17%  Similarity=0.177  Sum_probs=116.3

Q ss_pred             CCCCCCCCCCCCCCCCCCC---CCceEecCC--------CCCeEEEecCCccceeccCCCccccccccccccccCCCCCC
Q 045715           34 ILPSWVGEDDGMPSDCCDD---WVGVKCSAT--------TRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEEL  102 (199)
Q Consensus        34 ~~~~W~~~~~~~~~~~c~~---w~gv~C~~~--------~~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L  102 (199)
                      .+++|..     ..+||..   |.++.|+..        ...+..+.+.+++.+++++|.+..     +++..|..+++|
T Consensus         8 ~l~~~~~-----~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~-----lp~~~~~~l~~L   77 (597)
T 3oja_B            8 NVKPRQP-----EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----LPAALLDSFRQV   77 (597)
T ss_dssp             ---CCCS-----EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE-----ECTHHHHHCCCC
T ss_pred             cccCCCC-----CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC-----cCHHHHccCCCC
Confidence            4678876     5677633   555444320        112345567888999999998876     667778899999


Q ss_pred             cEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEE
Q 045715          103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL  182 (199)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  182 (199)
                      ++|+|++|.+++..|.    .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++ +|...|.++++|++|
T Consensus        78 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTL  152 (597)
T ss_dssp             SEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             cEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEE
Confidence            9999999999998887    89999999999999999998888889999999999999999998 777567999999999


Q ss_pred             eCcCCccCC
Q 045715          183 DLSSNYYIH  191 (199)
Q Consensus       183 ~Ls~N~l~~  191 (199)
                      +|++|.+++
T Consensus       153 ~Ls~N~l~~  161 (597)
T 3oja_B          153 SMSNNNLER  161 (597)
T ss_dssp             ECCSSCCCB
T ss_pred             EeeCCcCCC
Confidence            999999983

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.58  E-value=1.5e-14  Score=116.92  Aligned_cols=129  Identities=19%  Similarity=0.222  Sum_probs=79.3

Q ss_pred             CCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715           52 DWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL  130 (199)
Q Consensus        52 ~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L  130 (199)
                      .|..+.|.+... .+..--.+.++.|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|..+++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----IKDGDFKNLKNLHTLILINNKISKISPG----AFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-----BCTTTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-----eChhhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCC
Confidence            899999975321 1111112466778888887765     4455677788888888888888876676    77777777


Q ss_pred             CEEEcCCCCCCC---------------------CChhhhcCCCCCCEEecCCCcCCC--ccchhhccCCCCCCEEeCcCC
Q 045715          131 KMLNLGNNDFND---------------------NILPYLNTLTSLTTLNLRYNSIEG--SRTKQGLAKLKNLEALDLSSN  187 (199)
Q Consensus       131 ~~L~Ls~N~l~~---------------------~~p~~~~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L~Ls~N  187 (199)
                      ++|++++|+++.                     ..+..+..+++|++|++++|.++.  ..+ ..+..+++|+.|++++|
T Consensus       103 ~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          103 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             CEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCC
Confidence            777777777652                     222334455555555555555532  122 24555566666666666


Q ss_pred             ccC
Q 045715          188 YYI  190 (199)
Q Consensus       188 ~l~  190 (199)
                      .++
T Consensus       182 ~l~  184 (330)
T 1xku_A          182 NIT  184 (330)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=1.4e-14  Score=125.69  Aligned_cols=105  Identities=20%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .++.|+|++|.++.     + +. +..+++|+.|+|++|.++. +|.    .++.+++|+.|+|++|++++ +| .++.+
T Consensus       442 ~L~~L~Ls~n~l~~-----l-p~-~~~l~~L~~L~Ls~N~l~~-lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----L-CH-LEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS-----C-CC-GGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             CceEEEecCCCCCC-----C-cC-ccccccCcEeecCcccccc-cch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            34678999998875     3 33 8899999999999999995 788    99999999999999999996 67 89999


Q ss_pred             CCCCEEecCCCcCCCcc-chhhccCCCCCCEEeCcCCccCC
Q 045715          152 TSLTTLNLRYNSIEGSR-TKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      ++|+.|+|++|.+++.. |. .+..+++|+.|+|++|+|++
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGG
T ss_pred             CCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCC
Confidence            99999999999999943 65 89999999999999999993

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.57  E-value=1.3e-14  Score=118.08  Aligned_cols=89  Identities=20%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             cCCCCCCcEEECCC-CccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           96 FHPFEELQRLDLPM-NWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      +..+++|++|+|++ |.+++..+.    .|..+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...+.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  101 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence            77788888888885 888886666    78888888888888888888778888888888888888888887 7764555


Q ss_pred             CCCCCCEEeCcCCccC
Q 045715          175 KLKNLEALDLSSNYYI  190 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~  190 (199)
                      .++ |+.|+|++|+|.
T Consensus       102 ~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCC-CCEEECCSSCCC
T ss_pred             cCC-ceEEEeeCCCcc
Confidence            555 888888888886

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=1.8e-14  Score=116.45  Aligned_cols=85  Identities=26%  Similarity=0.228  Sum_probs=58.9

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      ++|++|++++|.+++..|.    .+..+++|++|++++|++++..+..+..+++|++|+|++|+++. +|. .+..+++|
T Consensus       192 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L  265 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPG-GLADHKYI  265 (330)
T ss_dssp             TTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCT-TTTTCSSC
T ss_pred             ccCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CCh-hhccCCCc
Confidence            4555666666666655455    66777777777777777776656667777777777777777775 665 56777777


Q ss_pred             CEEeCcCCccC
Q 045715          180 EALDLSSNYYI  190 (199)
Q Consensus       180 ~~L~Ls~N~l~  190 (199)
                      +.|++++|+|+
T Consensus       266 ~~L~l~~N~i~  276 (330)
T 1xku_A          266 QVVYLHNNNIS  276 (330)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCcCC
Confidence            77777777777

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=121.23  Aligned_cols=111  Identities=24%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      .+++.|+|++|.+..     +.+..|.++++|++|+|++|.++...+.    .|..+++|++|+|++|+++...+..|..
T Consensus        88 ~~L~~L~Ls~n~i~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~  158 (440)
T 3zyj_A           88 RHLEILQLSRNHIRT-----IEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKELWLRNNPIESIPSYAFNR  158 (440)
T ss_dssp             SSCCEEECCSSCCCE-----ECGGGGTTCSSCCEEECCSSCCSSCCTT----TSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred             CCCCEEECCCCcCCc-----cChhhccCCccCCEEECCCCcCCeeCHh----HhhccccCceeeCCCCcccccCHHHhhh
Confidence            345788888888765     5566777888888888888888875555    6777788888888888777555555666


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|+.|+|++|+..+.++...|.++++|+.|++++|+++
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            6666666666533333344444555555555555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=4.2e-15  Score=106.90  Aligned_cols=105  Identities=20%  Similarity=0.189  Sum_probs=91.0

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC-Chhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN-ILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~  148 (199)
                      +++++.|++++|.+..     +  ..+..+++|++|++++|.+++.+|.    .+..+++|++|++++|++++. .+..+
T Consensus        41 l~~L~~L~l~~n~l~~-----~--~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~ls~N~i~~~~~~~~~  109 (149)
T 2je0_A           41 FEELEFLSTINVGLTS-----I--ANLPKLNKLKKLELSDNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEPL  109 (149)
T ss_dssp             CTTCCEEECTTSCCCC-----C--TTCCCCTTCCEEECCSSCCCSCTHH----HHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred             cCCCcEEECcCCCCCC-----c--hhhhcCCCCCEEECCCCcccchHHH----HhhhCCCCCEEECCCCcCCChHHHHHH
Confidence            5678899999998876     3  5678899999999999999997777    777899999999999999863 34789


Q ss_pred             cCCCCCCEEecCCCcCCCccch---hhccCCCCCCEEeCcC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDLSS  186 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~~l~~L~~L~Ls~  186 (199)
                      ..+++|++|++++|.+++ +|.   ..+..+++|+.|++++
T Consensus       110 ~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          110 KKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             GGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence            999999999999999998 554   4688999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=8.7e-15  Score=123.84  Aligned_cols=107  Identities=22%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      ++|+|++|.+..     +++..|..+++|++|+|++|.+++..+.    .|..+++|++|++++|++++..+..|..+++
T Consensus        83 ~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  153 (477)
T 2id5_A           83 RTLGLRSNRLKL-----IPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNS  153 (477)
T ss_dssp             CEEECCSSCCCS-----CCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTT
T ss_pred             CEEECCCCcCCc-----cCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCC
Confidence            444444444433     3333444555555555555555554444    4555555555555555555444445555555


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |+.|+|++|.+++ ++...+.++++|+.|++++|.++
T Consensus       154 L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          154 LEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcCc
Confidence            5555555555555 44334555555555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=7.7e-15  Score=132.55  Aligned_cols=111  Identities=23%  Similarity=0.267  Sum_probs=83.0

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh--hcC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY--LNT  150 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~  150 (199)
                      +++|+|++|....    .+.+..|.++++|++|+|++|.+++..|.    .|..+++|++|+|++|++++.+|..  +..
T Consensus        50 L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           50 LQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPD----AFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             CSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTT----SSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             CeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHh----HccCCcccCEeeCcCCCCCcccccCccccc
Confidence            3566666663321    24466778888888888888888887777    8888888888888888888766654  778


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|+|++|.+++..+...|+++++|++|++++|.+++
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            88888888888888774443367888888888888888873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.56  E-value=9.5e-15  Score=125.73  Aligned_cols=98  Identities=23%  Similarity=0.332  Sum_probs=69.1

Q ss_pred             ccccCCCCCCcEEECCCCccC-ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchh
Q 045715           93 MSLFHPFEELQRLDLPMNWFT-GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQ  171 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  171 (199)
                      +..+..+++|++|++++|.++ +.+|.    .+..+++|++|++++|++++..|..+..+++|++|++++|++++ +|+.
T Consensus       438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~  512 (570)
T 2z63_A          438 NGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDG  512 (570)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred             hhhhhcCCcCcEEECcCCcCccccchh----hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC-CCHH
Confidence            344556667777777777765 34565    67777777777777777776667777777778888888777777 4444


Q ss_pred             hccCCCCCCEEeCcCCccCCCCcCC
Q 045715          172 GLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       172 ~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      .+.++++|+.|++++|+++ +..|.
T Consensus       513 ~~~~l~~L~~L~l~~N~~~-~~~~~  536 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWD-CSCPR  536 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBC-CCTTT
T ss_pred             HhhcccCCcEEEecCCccc-CCCcc
Confidence            6777777888888888777 34443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.56  E-value=2e-14  Score=121.07  Aligned_cols=110  Identities=25%  Similarity=0.240  Sum_probs=80.1

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|+|++|.+..     +.+..|..+++|++|+|++|.++...+.    .|..+++|++|+|++|+++...+..|..+
T Consensus       100 ~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  170 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQ-----IEVGAFNGLASLNTLELFDNWLTVIPSG----AFEYLSKLRELWLRNNPIESIPSYAFNRV  170 (452)
T ss_dssp             TCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCSBCCTT----TSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CCCEEECCCCccCC-----cChhhccCcccCCEEECCCCcCCccChh----hhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence            45789999998875     5567788899999999999999886665    68888889999999988886555566666


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|++++|+..+.++...|.++++|+.|++++|+++
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            667777766643333355545666666666666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=131.03  Aligned_cols=117  Identities=27%  Similarity=0.290  Sum_probs=94.2

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccc-cccchhhccCCCCCCEEEcCCCCCCCCChhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIY-ENRAYDSFGSLRQLKMLNLGNNDFNDNILPY  147 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  147 (199)
                      -.+.++.|+|++|.++.     +.+..|.++++|++|+|++|...+.+ |.    .|..+++|++|+|++|++++..|..
T Consensus        22 lp~~l~~LdLs~N~i~~-----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~----~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRT-----VTASSFPFLEQLQLLELGSQYTPLTIDKE----AFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             SCTTCCEEEEESCCCCE-----ECSSSCSSCCSCSEEEECTTCCCCEECTT----TTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCcCEEECCCCcCCc-----cChhHCcccccCeEEeCCCCCCccccCHH----HhcCCCCCCEEECCCCcCcccCHhH
Confidence            45677888888888875     55777888999999999998665555 55    7888899999999999998878888


Q ss_pred             hcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCCCCc
Q 045715          148 LNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIHGSL  194 (199)
Q Consensus       148 ~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~i  194 (199)
                      |.++++|++|+|++|.+++.+|. ..+.++++|++|+|++|.+++..+
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence            88999999999999998875554 137888999999999998885443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=2.2e-14  Score=105.81  Aligned_cols=107  Identities=27%  Similarity=0.292  Sum_probs=90.2

Q ss_pred             CCCCCceEecCCCC-CeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715           50 CDDWVGVKCSATTR-RVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR  128 (199)
Q Consensus        50 c~~w~gv~C~~~~~-~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  128 (199)
                      | .|..+.|.+... .+..--...++.|+|++|.++.     +.+..|..+++|++|+|++|++++..+.    .|..++
T Consensus         9 C-~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~f~~l~   78 (170)
T 3g39_A            9 C-SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK-----LEPGVFDRLTQLTRLDLDNNQLTVLPAG----VFDKLT   78 (170)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCT
T ss_pred             c-CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc-----cChhhhcCcccCCEEECCCCCcCccChh----hccCCC
Confidence            5 899999976321 1211113678999999999987     6678899999999999999999997666    789999


Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      +|++|+|++|++++..+..|..+++|++|+|++|.++.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999999999997777789999999999999999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.55  E-value=7.5e-15  Score=126.04  Aligned_cols=118  Identities=20%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~  148 (199)
                      +.++++|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|..+++|++|++++|++++ ..|..+
T Consensus        49 l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           49 CANLQVLILKSSRINT-----IEGDAFYSLGSLEHLDLSDNHLSSLSSS----WFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             CTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCCSCCHH----HHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CCcccEEECCCCCcCc-----cChhhccccccCCEEECCCCccCccCHH----HhccCCCCcEEECCCCcccccchhhhh
Confidence            4566899999999876     6677899999999999999999997776    79999999999999999986 356788


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      +.+++|++|++++|.+.+.+|...+.++++|++|++++|.+++ .+|..
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  167 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQS  167 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTT
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-cChhh
Confidence            9999999999999995555776679999999999999999983 34443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=122.78  Aligned_cols=108  Identities=23%  Similarity=0.234  Sum_probs=96.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +.++.|++++|.+..     +.+..|..+++|++|++++|++++..|.    .|..+++|++|+|++|+++ .+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISE-----LWTSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCC-----CCHHHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccEEECCCCcccc-----cChhhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ecCcc--c
Confidence            678899999999876     5567889999999999999999998788    8999999999999999998 56665  8


Q ss_pred             CCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|+|++|.+++ .+|. .++++++|++|++++|++++
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch
Confidence            9999999999999987 4565 79999999999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.52  E-value=1.8e-14  Score=115.65  Aligned_cols=40  Identities=18%  Similarity=0.039  Sum_probs=22.3

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG  114 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~  114 (199)
                      ++++++|++++|.+..     +.+..|..+++|++|+|++|++.+
T Consensus       144 ~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPA-----FSCEQVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CSCCCEEEEECCSSCC-----CCTTSCCCCTTCCEEECCSCTTCH
T ss_pred             ccCCCEEEeeCCCcch-----hhHHHhccCCCCCEEECCCCCCcc
Confidence            3444555555555543     334555566666666666666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=2.9e-14  Score=121.58  Aligned_cols=110  Identities=20%  Similarity=0.122  Sum_probs=71.6

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc-CCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG-SLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++.|++++|.+..     +.+..+..+++|++|+|++|.+++..|.    .+. .+++|++|+|++|.+++. + .+..+
T Consensus       122 L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l  190 (487)
T 3oja_A          122 KKNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVF  190 (487)
T ss_dssp             CEEEECCSSCCCS-----GGGBCGGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred             CCEEECCCCCCCC-----CCchhhcCCCCCCEEECCCCCCCCcChH----HHhhhCCcccEEecCCCccccc-c-ccccC
Confidence            3445555555543     3345566677777777777777776665    554 567777777777777643 2 23346


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      ++|+.|+|++|.+++ +|+ .+..+++|+.|+|++|.|+  .+|..
T Consensus       191 ~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~--~lp~~  232 (487)
T 3oja_A          191 AKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLV--LIEKA  232 (487)
T ss_dssp             TTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCC--EECTT
T ss_pred             CCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecCCcCc--ccchh
Confidence            777777777777777 665 4777777777777777777  35543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2e-14  Score=106.39  Aligned_cols=114  Identities=21%  Similarity=0.165  Sum_probs=94.0

Q ss_pred             EEecCCccceeccCCCccccccccccccccCCC-CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh
Q 045715           67 QLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPF-EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL  145 (199)
Q Consensus        67 ~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  145 (199)
                      ..+...++.|++++|.+..     + +. +..+ ++|++|++++|.+++.  .    .+..+++|++|++++|++++..+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-----i-~~-~~~~~~~L~~L~Ls~N~l~~~--~----~l~~l~~L~~L~Ls~N~l~~~~~   81 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-----I-EN-LGATLDQFDAIDFSDNEIRKL--D----GFPLLRRLKTLLVNNNRICRIGE   81 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-----C-CC-GGGGTTCCSEEECCSSCCCEE--C----CCCCCSSCCEEECCSSCCCEECS
T ss_pred             cCCcCCceEEEeeCCCCch-----h-HH-hhhcCCCCCEEECCCCCCCcc--c----ccccCCCCCEEECCCCcccccCc
Confidence            4556777888999998875     3 22 3444 4999999999999985  4    79999999999999999996555


Q ss_pred             hhhcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCCCCcCC
Q 045715          146 PYLNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       146 ~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~ip~  196 (199)
                      ..+..+++|++|+|++|.++. +|. ..+..+++|+.|++++|+++  .+|.
T Consensus        82 ~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~--~~~~  130 (176)
T 1a9n_A           82 GLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT--NKKH  130 (176)
T ss_dssp             CHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG--GSTT
T ss_pred             chhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC--CcHh
Confidence            566899999999999999977 664 36889999999999999998  4554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.52  E-value=4.1e-14  Score=122.21  Aligned_cols=108  Identities=26%  Similarity=0.303  Sum_probs=95.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +.++.|++++|.+..     +.+..|..+++|++|++++|.+++..|.    .|..+++|++|+|++|+++ .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISE-----LRMPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCC-----CCGGGTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCCCccc-----cChhhhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            577999999999986     6677899999999999999999998787    8999999999999999998 56655  7


Q ss_pred             CCCCCEEecCCCcCCC-ccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEG-SRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|++|+|++|++++ .+|. .|+++++|++|++++|++++
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT
T ss_pred             cccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc
Confidence            9999999999999988 2344 79999999999999999874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.52  E-value=4.7e-14  Score=122.48  Aligned_cols=110  Identities=20%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      .++++|++++|.+..     +.+..|.++++|++|++++|.+++..|.    .|..+++|++|++++|++++..+..++.
T Consensus        57 ~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~i~~l~~~~~~~  127 (606)
T 3t6q_A           57 INLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHN  127 (606)
T ss_dssp             TTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred             ccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChh----hhcccccccEeeccccCcccCCcchhcc
Confidence            345677777777654     4456667777777777777777766666    6666777777777777766544555666


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|++|++++|.+++ ++...+..+++|++|++++|+++
T Consensus       128 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A          128 QKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             CTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCC
T ss_pred             CCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccc
Confidence            6666666666666665 32113444666666666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=122.30  Aligned_cols=111  Identities=23%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCC-CChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND-NILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~  148 (199)
                      +.++++|++++|.+..     +.+..|..+++|++|++++|.++. +|.    .  .+++|++|++++|++++ .+|..|
T Consensus        44 l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~--~l~~L~~L~L~~N~l~~~~~p~~~  111 (520)
T 2z7x_B           44 LSKLRILIISHNRIQY-----LDISVFKFNQELEYLDLSHNKLVK-ISC----H--PTVNLKHLDLSFNAFDALPICKEF  111 (520)
T ss_dssp             CTTCCEEECCSSCCCE-----EEGGGGTTCTTCCEEECCSSCCCE-EEC----C--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred             cccccEEecCCCccCC-----cChHHhhcccCCCEEecCCCceee-cCc----c--ccCCccEEeccCCccccccchhhh
Confidence            4567899999999876     557789999999999999999996 775    4  79999999999999987 478899


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCC--CEEeCcCCcc--CCCCcCCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL--EALDLSSNYY--IHGSLEGN  197 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L--~~L~Ls~N~l--~~~~ip~~  197 (199)
                      +.+++|++|++++|.+++    ..+..+++|  +.|++++|.+  + +.+|+.
T Consensus       112 ~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~-~~~~~~  159 (520)
T 2z7x_B          112 GNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE-KEDPEG  159 (520)
T ss_dssp             GGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS-SCCTTT
T ss_pred             ccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc-cccccc
Confidence            999999999999999987    246677777  9999999999  4 344544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.51  E-value=2.1e-14  Score=117.12  Aligned_cols=110  Identities=21%  Similarity=0.284  Sum_probs=91.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhc
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLN  149 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~  149 (199)
                      ++++.|++++|.+..     +.+..|..+++|++|++++|.+++..+.    .|..+++|++|++++|+++...+ ..+.
T Consensus        76 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~  146 (353)
T 2z80_A           76 VNLQALVLTSNGINT-----IEEDSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKTLGETSLFS  146 (353)
T ss_dssp             TTCCEEECTTSCCCE-----ECTTTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSSSCSSCSCT
T ss_pred             CCCCEEECCCCccCc-----cCHhhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcccCchhhhc
Confidence            345889999998875     5567788999999999999999985554    58899999999999999985433 3788


Q ss_pred             CCCCCCEEecCCCc-CCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNS-IEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~-l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|++|++++|. +.. ++...+..+++|+.|++++|.++
T Consensus       147 ~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          147 HLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             TCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCC
T ss_pred             cCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcC
Confidence            89999999999984 655 65557888999999999999988

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=5.3e-14  Score=113.85  Aligned_cols=85  Identities=28%  Similarity=0.287  Sum_probs=55.0

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      ++|++|++++|.+++..+.    .+..+++|++|++++|++++..+..+..+++|+.|+|++|+++. +|. .+..+++|
T Consensus       193 ~~L~~L~l~~n~i~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~-~l~~l~~L  266 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELE----DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPA-GLPDLKLL  266 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTT----SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCT-TGGGCTTC
T ss_pred             CCCCEEECCCCcCCccCHH----HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cCh-hhhcCccC
Confidence            3556666666666665444    56666666677777776666555566666667777777666664 665 56666667


Q ss_pred             CEEeCcCCccC
Q 045715          180 EALDLSSNYYI  190 (199)
Q Consensus       180 ~~L~Ls~N~l~  190 (199)
                      +.|++++|+|+
T Consensus       267 ~~L~l~~N~l~  277 (332)
T 2ft3_A          267 QVVYLHTNNIT  277 (332)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCCCC
Confidence            77777766666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=3.4e-14  Score=114.51  Aligned_cols=109  Identities=20%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCCChhhhcCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDNILPYLNTLT  152 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  152 (199)
                      +.|++++|.+..     +.+..+..+++|++|++++|.+++..+.    .+ ..+++|++|++++|++++. + ....++
T Consensus       123 ~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~  191 (317)
T 3o53_A          123 KNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYDV-K-GQVVFA  191 (317)
T ss_dssp             EEEECCSSCCCS-----GGGBCTGGGSSEEEEECTTSCCCEEEGG----GGGGGTTTCCEEECTTSCCCEE-E-CCCCCT
T ss_pred             CEEECCCCCCCC-----ccchhhhccCCCCEEECCCCCCCcccHH----HHhhccCcCCEEECCCCcCccc-c-cccccc
Confidence            344444444443     3344555667777777777777765554    44 3566666666666666533 2 223466


Q ss_pred             CCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          153 SLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       153 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      +|++|+|++|++++ +|. .+..+++|+.|++++|+|+  .+|..
T Consensus       192 ~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~L~~N~l~--~l~~~  232 (317)
T 3o53_A          192 KLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLV--LIEKA  232 (317)
T ss_dssp             TCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTTSCCC--EECTT
T ss_pred             cCCEEECCCCcCCc-chh-hhcccCcccEEECcCCccc--chhhH
Confidence            67777777777766 555 4666677777777777766  44543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.51  E-value=9.9e-14  Score=121.80  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             CCccceeccCCCccccccccccccccCC-------CCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCCCCCC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHP-------FEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGNNDFN  141 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~-------l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~N~l~  141 (199)
                      +.++.|++++|.+..     ++...+..       +++|++|+|++|.++. +|.    .+.  .+++|++|+|++|+++
T Consensus       457 ~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~----~~~~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          457 SPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD----DFRATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             CCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCG----GGSTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCCCCC-----cCHHHhccccccccccCCccEEECcCCcCCc-cCh----hhhhccCCCcCEEECCCCCCC
Confidence            344677777777763     33333332       2378888888888884 666    665  7888888888888888


Q ss_pred             CCChhhhcCCCCCCEEec------CCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          142 DNILPYLNTLTSLTTLNL------RYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       142 ~~~p~~~~~l~~L~~L~L------s~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      + +|..+..+++|+.|+|      ++|++.+.+|. .+..+++|+.|+|++|+++  .+|..+
T Consensus       527 ~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~--~ip~~~  585 (636)
T 4eco_A          527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIR--KVNEKI  585 (636)
T ss_dssp             S-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCC--BCCSCC
T ss_pred             C-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEEECCCCcCC--ccCHhH
Confidence            6 7777778888888888      45667776775 7788888888888888885  667654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.51  E-value=7.4e-14  Score=122.87  Aligned_cols=91  Identities=29%  Similarity=0.295  Sum_probs=42.3

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .|.++++|++|++++|.+++..|.    .|..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ++...+.
T Consensus        92 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~  166 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELD  166 (680)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHG
T ss_pred             hhccCCCCCEEECCCCccCccChh----HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhh
Confidence            344444455555554444443333    44444555555555555544444444445555555555555444 2222222


Q ss_pred             --CCCCCCEEeCcCCccC
Q 045715          175 --KLKNLEALDLSSNYYI  190 (199)
Q Consensus       175 --~l~~L~~L~Ls~N~l~  190 (199)
                        .+++|+.|++++|+++
T Consensus       167 ~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          167 IFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             GGTTCEESEEECTTCCCC
T ss_pred             ccccccccEEECCCCccc
Confidence              2344555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=2e-14  Score=115.56  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=47.3

Q ss_pred             cCCccceeccCCCcccccccccccccc--CCCCCCcEEECCCCccCccccccchhhccCC-----CCCCEEEcCCCCCCC
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLF--HPFEELQRLDLPMNWFTGIYENRAYDSFGSL-----RQLKMLNLGNNDFND  142 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~~  142 (199)
                      +.++++|++++|.+...    + +..+  ..+++|++|++++|.+++. |.    .+..+     ++|++|++++|++++
T Consensus        94 l~~L~~L~L~~n~l~~~----~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~----~~~~l~~~~~~~L~~L~L~~N~l~~  163 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGT----A-PPPLLEATGPDLNILNLRNVSWATR-DA----WLAELQQWLKPGLKVLSIAQAHSLN  163 (312)
T ss_dssp             TSCCCEEEEEEEBCBSC----C-CCCSSSCCSCCCSEEEEESCBCSSS-SS----HHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred             cCCccEEEccCCcccch----h-HHHHHHhcCCCccEEEccCCCCcch-hH----HHHHHHHhhcCCCcEEEeeCCCCcc
Confidence            45667777777777641    1 2222  5666666666666666664 44    44333     455555555555554


Q ss_pred             CChhhhcCCCCCCEEecCCCcCCC
Q 045715          143 NILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       143 ~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      ..+..|+.+++|++|+|++|++.+
T Consensus       164 ~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          164 FSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             chHHHhccCCCCCEEECCCCCcCc
Confidence            444445555555555555555433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.50  E-value=8.5e-14  Score=120.24  Aligned_cols=108  Identities=18%  Similarity=0.176  Sum_probs=92.2

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.+++++|.++.     ++.. +  .++|++|++++|.+++..|.    .|..+++|++|+|++|++++..|..|..+++
T Consensus        34 ~~l~ls~~~L~~-----ip~~-~--~~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           34 SMVDYSNRNLTH-----VPKD-L--PPRTKALSLSQNSISELRMP----DISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             CEEECTTSCCCS-----CCTT-S--CTTCCEEECCSSCCCCCCGG----GTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cEEEcCCCCCcc-----CCCC-C--CCCcCEEECCCCCccccChh----hhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            556666677764     3332 2  27999999999999997777    8999999999999999999888999999999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      |++|+|++|+++. +|. .  .+++|++|++++|++++..+|+.
T Consensus       102 L~~L~Ls~N~l~~-lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~  141 (562)
T 3a79_B          102 LEYLDVSHNRLQN-ISC-C--PMASLRHLDLSFNDFDVLPVCKE  141 (562)
T ss_dssp             CCEEECTTSCCCE-ECS-C--CCTTCSEEECCSSCCSBCCCCGG
T ss_pred             CCEEECCCCcCCc-cCc-c--ccccCCEEECCCCCccccCchHh
Confidence            9999999999997 887 3  89999999999999996666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=2.8e-13  Score=108.02  Aligned_cols=101  Identities=34%  Similarity=0.338  Sum_probs=57.0

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|++++|.+..       ...+..+++|++|++++|.+++. +     .+..+++|+.|++++|++++.  ..+..+
T Consensus        91 ~L~~L~l~~n~l~~-------~~~l~~l~~L~~L~L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~--~~l~~l  155 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-------LSSLKDLKKLKSLSLEHNGISDI-N-----GLVHLPQLESLYLGNNKITDI--TVLSRL  155 (291)
T ss_dssp             TCCEEECCSSCCCC-------GGGGTTCTTCCEEECTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             CCCEEECCCCcCCC-------ChhhccCCCCCEEECCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcc--hhhccC
Confidence            34556666665543       22355566666666666666552 2     455556666666666666543  345555


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|++++|.+++ ++.  +..+++|+.|++++|+++
T Consensus       156 ~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          156 TKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             TTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence            666666666666655 332  555666666666666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.47  E-value=5.1e-13  Score=107.35  Aligned_cols=62  Identities=35%  Similarity=0.506  Sum_probs=30.1

Q ss_pred             ccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          124 FGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       124 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+++|++|++++|++++ ++. +..+++|+.|++++|.+++ ++.  +..+++|++|++++|+++
T Consensus       147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCC
T ss_pred             ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccC
Confidence            3444445555555555443 222 4455555555555555544 332  445555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=4.9e-13  Score=105.18  Aligned_cols=102  Identities=26%  Similarity=0.318  Sum_probs=52.8

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +.+++.|++++|.+..     +.+  +..+++|++|++++|++++ +|.     +.. ++|++|++++|++++ + ..+.
T Consensus        62 l~~L~~L~L~~N~i~~-----~~~--l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~-~~l~  125 (263)
T 1xeu_A           62 FTNLKELHLSHNQISD-----LSP--LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-T-DSLI  125 (263)
T ss_dssp             CTTCCEEECCSSCCCC-----CGG--GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-S-GGGT
T ss_pred             CCCCCEEECCCCccCC-----Chh--hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-C-hhhc
Confidence            3455666666666654     222  5566666666666666665 332     122 455555555555543 1 2345


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|+.|+|++|++++ ++  .+..+++|+.|++++|+++
T Consensus       126 ~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             TCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCC
T ss_pred             CcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCc
Confidence            55555555555555554 33  3445555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.46  E-value=2.2e-13  Score=108.72  Aligned_cols=103  Identities=29%  Similarity=0.337  Sum_probs=90.7

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ..++.|++++|.+..       ...+..+++|++|++++|.+++.  .    .+..+++|++|++++|++++..+  +..
T Consensus       112 ~~L~~L~L~~n~i~~-------~~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~--l~~  176 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-------INGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAG  176 (291)
T ss_dssp             TTCCEEECTTSCCCC-------CGGGGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CCCCEEECCCCcCCC-------ChhhcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh--hcC
Confidence            345889999999876       24577899999999999999985  4    78999999999999999996544  899


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|+.|++++|.+++ ++  .+..+++|+.|++++|+++.
T Consensus       177 l~~L~~L~L~~N~i~~-l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCCEEECCSSCCCB-CG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCccCEEECCCCcCCC-Ch--hhccCCCCCEEECcCCcccC
Confidence            9999999999999998 66  48999999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=4.2e-13  Score=121.49  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             CCccceeccCCCccccccccccccccC-------CCCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCCCCCC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFH-------PFEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGNNDFN  141 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~N~l~  141 (199)
                      +.++.|+|++|.+..     ++...+.       ++++|+.|+|++|+++. +|.    .+.  .+++|+.|+|++|+++
T Consensus       697 ~~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~----~l~~~~l~~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          697 SPISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD----DFRATTLPYLSNMDVSYNCFS  766 (876)
T ss_dssp             CCCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCG----GGSTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-chH----HhhhccCCCcCEEEeCCCCCC
Confidence            345778888887763     3333333       23388888888888884 666    665  7888888888888888


Q ss_pred             CCChhhhcCCCCCCEEecCC------CcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          142 DNILPYLNTLTSLTTLNLRY------NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       142 ~~~p~~~~~l~~L~~L~Ls~------N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      + +|..+..+++|+.|+|++      |++.+.+|. .+.++++|+.|+|++|+|.  .+|..++
T Consensus       767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~--~Ip~~l~  826 (876)
T 4ecn_A          767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR--KVDEKLT  826 (876)
T ss_dssp             S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCC--BCCSCCC
T ss_pred             c-cchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCCC--ccCHhhc
Confidence            6 677788888888888866      777776776 7888888888888888885  7776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=3.7e-13  Score=99.62  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             CCCceEecCCC-CCeEEEecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCC
Q 045715           52 DWVGVKCSATT-RRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQL  130 (199)
Q Consensus        52 ~w~gv~C~~~~-~~v~~l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L  130 (199)
                      ....+.|.+.. ..+..--...++.|+|++|.+..     +.+..|..+++|++|+|++|++++..+.    .|..+++|
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L   83 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITK-----LEPGVFDHLVNLQQLYFNSNKLTAIPTG----VFDKLTQL   83 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTC
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccc-----cCHHHhcCCcCCCEEECCCCCCCccChh----HhCCcchh
Confidence            56667776522 12211123678999999999986     6678899999999999999999996555    67899999


Q ss_pred             CEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715          131 KMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       131 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      ++|+|++|++++..+..|..+++|++|+|++|.+..
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999999999997666679999999999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=7.3e-13  Score=106.40  Aligned_cols=101  Identities=25%  Similarity=0.278  Sum_probs=66.2

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|++++|.+..       ...+..+++|++|++++|.+++ ++     .+..+++|++|++++|++++..+  +..+
T Consensus        86 ~L~~L~L~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~--l~~l  150 (308)
T 1h6u_A           86 KITELELSGNPLKN-------VSAIAGLQSIKTLDLTSTQITD-VT-----PLAGLSNLQVLYLDLNQITNISP--LAGL  150 (308)
T ss_dssp             SCCEEECCSCCCSC-------CGGGTTCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             CCCEEEccCCcCCC-------chhhcCCCCCCEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCcCcc--ccCC
Confidence            34556666666544       1245666667777777777665 33     46667777777777777764322  6677


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|++++|.+++ ++.  +..+++|+.|++++|+++
T Consensus       151 ~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          151 TNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             TTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCccC
Confidence            777777777777776 543  677777777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=4.7e-13  Score=114.07  Aligned_cols=109  Identities=24%  Similarity=0.311  Sum_probs=91.9

Q ss_pred             CccceeccCCCccccccccccccccC-CCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFH-PFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      .++.|+|++|.+..     +.+..+. .+++|++|+|++|.+++. |     .+..+++|+.|+|++|++++. |..+..
T Consensus       145 ~L~~L~Ls~N~l~~-----~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  212 (487)
T 3oja_A          145 RVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAFM-GPEFQS  212 (487)
T ss_dssp             SEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCEE-CGGGGG
T ss_pred             CCCEEECCCCCCCC-----cChHHHhhhCCcccEEecCCCccccc-c-----ccccCCCCCEEECCCCCCCCC-CHhHcC
Confidence            34789999999876     3355554 789999999999999985 4     345699999999999999964 445889


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCc
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL  194 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~i  194 (199)
                      +++|+.|+|++|.+++ +|. .+..+++|+.|++++|.++.+.+
T Consensus       213 l~~L~~L~Ls~N~l~~-lp~-~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          213 AAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             GTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCBCHHHH
T ss_pred             CCCccEEEecCCcCcc-cch-hhccCCCCCEEEcCCCCCcCcch
Confidence            9999999999999998 887 79999999999999999973333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.45  E-value=5.7e-14  Score=114.71  Aligned_cols=136  Identities=15%  Similarity=0.212  Sum_probs=97.0

Q ss_pred             CCCCCceEecCCCCCeEEE--e-cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715           50 CDDWVGVKCSATTRRVMQL--S-LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS  126 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l--~-l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  126 (199)
                      | ++..|.|.+.  +++++  + ..++++|+|++|.++.     +++..|.++++|++|+|++|.+.+.+|..   .|.+
T Consensus         9 C-~~~~v~C~~~--~Lt~iP~~l~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~   77 (350)
T 4ay9_X            9 C-SNRVFLCQES--KVTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSN   77 (350)
T ss_dssp             E-ETTEEEEEST--TCCSCCTTCCTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECTT---SBCS
T ss_pred             e-eCCEEEecCC--CCCccCcCcCCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccChh---Hhhc
Confidence            6 8899999753  33333  2 2568999999999986     77788999999999999999987766541   5677


Q ss_pred             CCCCCE-EEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch-------------------------hhccCCC-CC
Q 045715          127 LRQLKM-LNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK-------------------------QGLAKLK-NL  179 (199)
Q Consensus       127 l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-------------------------~~~~~l~-~L  179 (199)
                      ++++++ +.++.|+++...|..|..+++|++|++++|+++. +|.                         ..|..+. .+
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             chhhhhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            777665 5566778876667777888888888888877765 332                         1223332 46


Q ss_pred             CEEeCcCCccCCCCcCCCCC
Q 045715          180 EALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       180 ~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      +.|++++|+|+  .+|...|
T Consensus       157 ~~L~L~~N~i~--~i~~~~f  174 (350)
T 4ay9_X          157 VILWLNKNGIQ--EIHNSAF  174 (350)
T ss_dssp             EEEECCSSCCC--EECTTSS
T ss_pred             hhhcccccccc--CCChhhc
Confidence            67777777777  5555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=1.2e-13  Score=110.94  Aligned_cols=120  Identities=25%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      .++.+++|++++|.+...... .....+..+++|++|++++|.++. ++......+..+++|++|+|++|++++..|..+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGL-MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHH-HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             cCCCCCEEECCCCCCccchhh-hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence            356778888888876431100 112223567777777777777764 222000013566777777777777776666666


Q ss_pred             cCC---CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCc
Q 045715          149 NTL---TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSL  194 (199)
Q Consensus       149 ~~l---~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~i  194 (199)
                      ..+   ++|++|+|++|+++. +|. .+.  ++|+.|+|++|+|++.++
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~~-lp~-~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLEQ-VPK-GLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCCS-CCS-CCC--SCCSCEECCSCCCCSCCC
T ss_pred             HhccCcCcCCEEECCCCCCCc-hhh-hhc--CCCCEEECCCCcCCCCch
Confidence            555   577777777777775 665 342  677777777777774433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.45  E-value=4.1e-13  Score=108.96  Aligned_cols=105  Identities=28%  Similarity=0.375  Sum_probs=73.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +..++.|++++|.+..     +.+  +..+++|++|++++|.+++. +     .+..+++|++|++++|++++.  ..+.
T Consensus       220 ~~~L~~L~l~~n~l~~-----~~~--~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~l~~n~l~~~--~~~~  284 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITD-----LSP--LANLSQLTWLEIGTNQISDI-N-----AVKDLTKLKMLNVGSNQISDI--SVLN  284 (347)
T ss_dssp             CTTCCEEECCSSCCCC-----CGG--GTTCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCCC--GGGG
T ss_pred             CCcCCEEEccCCccCC-----Ccc--hhcCCCCCEEECCCCccCCC-h-----hHhcCCCcCEEEccCCccCCC--hhhc
Confidence            3456778888887765     222  66777788888888877763 2     567777777777777777743  3466


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|+.|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCC
T ss_pred             CCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccc
Confidence            77777777777777776333 36777777777777777777

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.7e-13  Score=122.07  Aligned_cols=169  Identities=15%  Similarity=0.103  Sum_probs=97.8

Q ss_pred             cHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEecCCCCCeEEEecC----------Ccccee
Q 045715            8 LETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLN----------YTTKFN   77 (199)
Q Consensus         8 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~----------~~~~L~   77 (199)
                      .+.+..+|+++..+...+.    . .....|..    ..+... .|.++.+..  .+++.+.+.          .++.++
T Consensus       130 ~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~----~~~~~~-~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~  197 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSK----T-AKKQQPTG----DSTPSG-TATNSAVST--PLTPKIELFANGKDEANQALLQHKK  197 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHH----T-TC-----------------------------------------------------
T ss_pred             cccchhhhhhhhhhccccc----C-cccCCCcC----CCCccc-cCCCceecC--CccceEEeeCCCCCcchhhHhhcCc
Confidence            4456789999998875554    2 23455754    244556 888887754  456666653          235677


Q ss_pred             ccCCCcccccc----ccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           78 YSYNSVYWEGV----LVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        78 ls~N~~~~~~~----~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      |+.|.+.....    ..+.+..|..++.|+.|+|++|.+.. +|.    .+..+++|++|+|++|+++ .+|..|+.+++
T Consensus       198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  271 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN-ISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN  271 (727)
T ss_dssp             ------------------------CCCCCCEEECTTSCCSC-CCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred             cCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC-CCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence            77777654221    12446778899999999999999996 676    7779999999999999999 78999999999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      |++|+|++|.|+. +|. .|..+++|++|+|++|.|+  .+|..|
T Consensus       272 L~~L~Ls~N~l~~-lp~-~~~~l~~L~~L~L~~N~l~--~lp~~~  312 (727)
T 4b8c_D          272 LRVLDLSHNRLTS-LPA-ELGSCFQLKYFYFFDNMVT--TLPWEF  312 (727)
T ss_dssp             CCEEECTTSCCSS-CCS-SGGGGTTCSEEECCSSCCC--CCCSST
T ss_pred             CCEEeCcCCcCCc-cCh-hhcCCCCCCEEECCCCCCC--ccChhh
Confidence            9999999999995 887 7999999999999999998  778764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.44  E-value=7.5e-13  Score=115.66  Aligned_cols=84  Identities=35%  Similarity=0.417  Sum_probs=49.7

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..+++|+.|+|++|.+++.  .    .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.|++ ++  .+..
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~  195 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR--ALAG  195 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--G----GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG--GGTT
T ss_pred             ccCCCccCEEECCCCccCCc--h----hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch--HHcc
Confidence            44455555555555555553  2    45566666666666666664433  5666666666666666665 43  3666


Q ss_pred             CCCCCEEeCcCCccC
Q 045715          176 LKNLEALDLSSNYYI  190 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~  190 (199)
                      +++|+.|+|++|+++
T Consensus       196 l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          196 LKNLDVLELFSQECL  210 (605)
T ss_dssp             CTTCSEEECCSEEEE
T ss_pred             CCCCCEEEccCCcCc
Confidence            666666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.43  E-value=3.2e-13  Score=108.77  Aligned_cols=106  Identities=23%  Similarity=0.304  Sum_probs=90.0

Q ss_pred             CCccceeccCCCcccccccccccccc-CCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLF-HPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ..++.|++++|.+..     +.+..+ ..+++|++|++++|.+++. +     ....+++|++|++++|++++ +|..+.
T Consensus       144 ~~L~~L~Ls~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~-l~~~~~  211 (317)
T 3o53_A          144 SRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIYDV-K-----GQVVFAKLKTLDLSSNKLAF-MGPEFQ  211 (317)
T ss_dssp             SSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTSCCCEE-E-----CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred             CCCCEEECCCCCCCc-----ccHHHHhhccCcCCEEECCCCcCccc-c-----cccccccCCEEECCCCcCCc-chhhhc
Confidence            345789999999876     334444 4789999999999999985 4     34468999999999999995 455589


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|+.|+|++|.++. +|. .+..+++|+.|++++|+++
T Consensus       212 ~l~~L~~L~L~~N~l~~-l~~-~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          212 SAAGVTWISLRNNKLVL-IEK-ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGTTCSEEECTTSCCCE-ECT-TCCCCTTCCEEECTTCCCB
T ss_pred             ccCcccEEECcCCcccc-hhh-HhhcCCCCCEEEccCCCcc
Confidence            99999999999999997 887 7899999999999999997

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=1.2e-12  Score=114.42  Aligned_cols=103  Identities=31%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ..++.|+|++|.+..       ...+..+++|+.|+|++|.+++ ++     .+..+++|+.|+|++|++++.  ..+..
T Consensus        87 ~~L~~L~Ls~N~l~~-------l~~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~  151 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-------LSSLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSR  151 (605)
T ss_dssp             TTCCEEECCSSCCCC-------CTTSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGS
T ss_pred             CCCCEEECcCCCCCC-------ChhhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcc
Confidence            345677777777654       2357778888888888888887 33     678888899999999998864  56888


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|+.|+|++|.+++ +++  +..+++|+.|+|++|+|++
T Consensus       152 l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB
T ss_pred             cCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCC
Confidence            8999999999999988 543  7888999999999998884

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=6.3e-13  Score=108.05  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=87.9

Q ss_pred             CCCCCceEecCC-CC-CeEEE-ecCCccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhcc
Q 045715           50 CDDWVGVKCSAT-TR-RVMQL-SLNYTTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFG  125 (199)
Q Consensus        50 c~~w~gv~C~~~-~~-~v~~l-~l~~~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  125 (199)
                      | .|..|.|.+. .. .+..+ .+.+++.|+|++ |.+..     +++..|..+++|++|+|++|+|++..|.    .|.
T Consensus         8 C-~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~   77 (347)
T 2ifg_A            8 H-GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVKSGLRFVAPD----AFH   77 (347)
T ss_dssp             S-SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCSSCCCEECTT----GGG
T ss_pred             c-cCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCC-----cChhHhccccCCCEEECCCCccceeCHH----Hhc
Confidence            7 8999999764 11 12221 244679999996 99986     6678899999999999999999998887    899


Q ss_pred             CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715          126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       126 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      .+++|++|+|++|+|++..+..|..++ |+.|+|.+|.+..
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999999999999976666676666 9999999999985

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.41  E-value=1.7e-12  Score=102.14  Aligned_cols=105  Identities=24%  Similarity=0.324  Sum_probs=88.8

Q ss_pred             ecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhh
Q 045715           69 SLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYL  148 (199)
Q Consensus        69 ~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  148 (199)
                      .+..++.|++++|.+..     +  ..+..+++|++|++++|.+++ ++     .+..+++|++|++++|++++ +|. +
T Consensus        39 ~l~~L~~L~l~~n~i~~-----l--~~l~~l~~L~~L~L~~N~i~~-~~-----~l~~l~~L~~L~L~~N~l~~-l~~-~  103 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQS-----L--AGMQFFTNLKELHLSHNQISD-LS-----PLKDLTKLEELSVNRNRLKN-LNG-I  103 (263)
T ss_dssp             HHTTCSEEECTTSCCCC-----C--TTGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCSC-CTT-C
T ss_pred             hcCcCcEEECcCCCccc-----c--hHHhhCCCCCEEECCCCccCC-Ch-----hhccCCCCCEEECCCCccCC-cCc-c
Confidence            46778899999998875     3  257889999999999999998 44     47889999999999999985 443 3


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG  192 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~  192 (199)
                      .. ++|+.|+|++|.+++ ++  .+..+++|+.|++++|++++.
T Consensus       104 ~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             CC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC
T ss_pred             cc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC
Confidence            33 899999999999998 65  589999999999999999843

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.39  E-value=3.2e-12  Score=103.64  Aligned_cols=103  Identities=25%  Similarity=0.312  Sum_probs=75.6

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|++++|.+..       ...+..+++|++|++++|.+++. +     .+..+++|++|++++|++++..+..+..+
T Consensus       244 ~L~~L~l~~n~l~~-------~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  310 (347)
T 4fmz_A          244 QLTWLEIGTNQISD-------INAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGL  310 (347)
T ss_dssp             TCCEEECCSSCCCC-------CGGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred             CCCEEECCCCccCC-------ChhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence            44677788777765       23467778888888888888773 3     67778888888888888877777778888


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|++++|++++ +++  +..+++|+.|++++|.|+
T Consensus       311 ~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          311 TNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence            888888888888877 443  667788888888888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=2.8e-12  Score=111.26  Aligned_cols=102  Identities=22%  Similarity=0.185  Sum_probs=88.0

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC-hhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI-LPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~  148 (199)
                      +.+++.|+|++|.+..     + |..+..+++|+.|+|++|.+++ +|     .+..+++|++|+|++|++++.. |..+
T Consensus       462 l~~L~~L~Ls~N~l~~-----l-p~~~~~l~~L~~L~Ls~N~l~~-lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRA-----L-PPALAALRCLEVLQASDNALEN-VD-----GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             GTTCCEEECCSSCCCC-----C-CGGGGGCTTCCEEECCSSCCCC-CG-----GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             cccCcEeecCcccccc-----c-chhhhcCCCCCEEECCCCCCCC-Cc-----ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence            5678999999999974     4 5578899999999999999998 55     6899999999999999999876 9999


Q ss_pred             cCCCCCCEEecCCCcCCCccchh---hccCCCCCCEEeC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQ---GLAKLKNLEALDL  184 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~---~~~~l~~L~~L~L  184 (199)
                      +.+++|+.|+|++|.+++ +|+.   .+..+++|+.|++
T Consensus       530 ~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred             hcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence            999999999999999998 4431   2344899999975

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=3.9e-13  Score=110.88  Aligned_cols=115  Identities=25%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccC----ccccccchhhccCCCCCCEEEcCCCCCCCC----
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFT----GIYENRAYDSFGSLRQLKMLNLGNNDFNDN----  143 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----  143 (199)
                      .++.|++++|.+...+...+.+..+..+++|++|+|++|.++    ..+|.    .+..+++|++|+|++|++++.    
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEECCCCCCchhhHHH
Confidence            345666666666543322233335677888888888888885    44565    778888888888888888754    


Q ss_pred             Chhhhc--CCCCCCEEecCCCcCCC----ccchhhc-cCCCCCCEEeCcCCccCC
Q 045715          144 ILPYLN--TLTSLTTLNLRYNSIEG----SRTKQGL-AKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       144 ~p~~~~--~l~~L~~L~Ls~N~l~~----~ip~~~~-~~l~~L~~L~Ls~N~l~~  191 (199)
                      ++..+.  .+++|+.|+|++|.+++    .+|. .+ .++++|+.|++++|++++
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCc
Confidence            455553  38888888888888887    4665 44 668888899999888874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=8.4e-12  Score=105.56  Aligned_cols=96  Identities=23%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +++++|++++|.+..     +   .+..+++|++|++++|.+++.       .+..+++|++|++++|++++ ++  ++.
T Consensus        64 ~~L~~L~Ls~n~l~~-----~---~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~L~L~~N~l~~-l~--~~~  125 (457)
T 3bz5_A           64 TGLTKLICTSNNITT-----L---DLSQNTNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNKLTK-LD--VSQ  125 (457)
T ss_dssp             TTCSEEECCSSCCSC-----C---CCTTCTTCSEEECCSSCCSCC-------CCTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred             CCCCEEEccCCcCCe-----E---ccccCCCCCEEECcCCCCcee-------ecCCCCcCCEEECCCCcCCe-ec--CCC
Confidence            445566666666554     2   145566666666666666652       24556666666666666664 22  566


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCc
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                      +++|++|++++|++++ ++   +..+++|+.|++++|+
T Consensus       126 l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCS
T ss_pred             CCcCCEEECCCCccce-ec---cccCCcCCEEECCCCC
Confidence            6666666666666666 42   5566666666666663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=4.1e-12  Score=110.26  Aligned_cols=93  Identities=20%  Similarity=0.183  Sum_probs=51.4

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|++++|.+..     ++    ..+++|++|++++|.+++ +|.     +..  +|++|+|++|++++ +|.   .+
T Consensus        81 ~L~~L~Ls~N~l~~-----ip----~~l~~L~~L~Ls~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l  139 (571)
T 3cvr_A           81 QITVLEITQNALIS-----LP----ELPASLEYLDACDNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LP  139 (571)
T ss_dssp             TCSEEECCSSCCSC-----CC----CCCTTCCEEECCSSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CC
T ss_pred             CCCEEECcCCCCcc-----cc----cccCCCCEEEccCCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cC
Confidence            35778888887763     32    235677777777777776 442     222  55566666665554 333   34


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|+.|+|++|.+++ +|.    .+++|+.|+|++|+|+
T Consensus       140 ~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A          140 ALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS
T ss_pred             ccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCC
Confidence            555555555555554 442    2344445555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.32  E-value=1.4e-11  Score=103.98  Aligned_cols=84  Identities=26%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..+++|+.|++++|.+++. +     .+..+++|++|++++|++++..|  +..+++|+.|++++|++++ ++  .+..
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~  351 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDI-S-----PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS--SLAN  351 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCC-G-----GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTT
T ss_pred             ccCCCccCeEEcCCCcccCc-h-----hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-ch--hhcc
Confidence            33444444444444444442 1     23344444444444444443322  3344444444444444444 22  2344


Q ss_pred             CCCCCEEeCcCCccC
Q 045715          176 LKNLEALDLSSNYYI  190 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~  190 (199)
                      +++|+.|++++|+++
T Consensus       352 l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          352 LTNINWLSAGHNQIS  366 (466)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCCCEEeCCCCccC
Confidence            444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.31  E-value=1.6e-11  Score=103.71  Aligned_cols=102  Identities=26%  Similarity=0.286  Sum_probs=84.7

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .++.|++++|.+..     +  ..+..+++|++|++++|.+++..      .+..+++|++|++++|++++.  ..+..+
T Consensus       288 ~L~~L~L~~n~l~~-----~--~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~--~~l~~l  352 (466)
T 1o6v_A          288 ALTNLELNENQLED-----I--SPISNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSDV--SSLANL  352 (466)
T ss_dssp             TCSEEECCSSCCSC-----C--GGGGGCTTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred             ccCeEEcCCCcccC-----c--hhhcCCCCCCEEECcCCcCCCch------hhccCccCCEeECCCCccCCc--hhhccC
Confidence            34566666666654     2  22678999999999999999854      367899999999999999964  578999


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      ++|+.|++++|++++ +++  +..+++|+.|++++|++++
T Consensus       353 ~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          353 TNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCCEEECCSSCCCB-CGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCEEeCCCCccCc-cch--hhcCCCCCEEeccCCcccC
Confidence            999999999999999 443  7899999999999999985

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=3.2e-14  Score=107.15  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +..+++|++++|.+..     ++  .+..+++|++|++++|.++. +|.    .+..+++|++|++++|++++ +| .+.
T Consensus        47 l~~L~~L~ls~n~l~~-----l~--~~~~l~~L~~L~l~~n~l~~-l~~----~~~~~~~L~~L~L~~N~l~~-l~-~~~  112 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-----IS--SLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-LS-GIE  112 (198)
T ss_dssp             TTTCSEEECSEEEESC-----CC--CHHHHTTCCEEEEEEEEECS-CSS----HHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred             CCCCCEEECCCCCCcc-----cc--ccccCCCCCEEECCCCCccc-ccc----hhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence            5678889999988865     32  67788999999999999986 676    77778899999999999985 44 688


Q ss_pred             CCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|++|++++|.+++ ++. ..+..+++|++|++++|+++
T Consensus       113 ~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence            88999999999999987 443 36888999999999999886

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.29  E-value=8.3e-13  Score=106.56  Aligned_cols=87  Identities=22%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC-CCCCC-ChhhhcCCCCCCEEecCCC-cCCCc-cchh
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDN-ILPYLNTLTSLTTLNLRYN-SIEGS-RTKQ  171 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~  171 (199)
                      +..+++|++|++++|.+++..+.    .+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++. 
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-  188 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-  188 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-
T ss_pred             HhhCCCCCEEeCcCcccCHHHHH----HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-
Confidence            44455555555555555544444    4555555555555555 34431 3334445555555555555 55432 222 


Q ss_pred             hccCCC-CCCEEeCcCC
Q 045715          172 GLAKLK-NLEALDLSSN  187 (199)
Q Consensus       172 ~~~~l~-~L~~L~Ls~N  187 (199)
                      .+..++ +|++|++++|
T Consensus       189 ~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          189 AVAHVSETITQLNLSGY  205 (336)
T ss_dssp             HHHHSCTTCCEEECCSC
T ss_pred             HHHhcccCCCEEEeCCC
Confidence            344555 5555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=4e-11  Score=104.03  Aligned_cols=94  Identities=27%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ++++.|++++|.+..     ++.  +..  +|++|++++|.+++ +|     .  .+++|+.|++++|++++ +|.   .
T Consensus       100 ~~L~~L~Ls~N~l~~-----ip~--l~~--~L~~L~Ls~N~l~~-lp-----~--~l~~L~~L~Ls~N~l~~-lp~---~  158 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-----LPE--LPA--SLKHLDVDNNQLTM-LP-----E--LPALLEYINADNNQLTM-LPE---L  158 (571)
T ss_dssp             TTCCEEECCSSCCSC-----CCC--CCT--TCCEEECCSSCCSC-CC-----C--CCTTCCEEECCSSCCSC-CCC---C
T ss_pred             CCCCEEEccCCCCCC-----cch--hhc--CCCEEECCCCcCCC-CC-----C--cCccccEEeCCCCccCc-CCC---c
Confidence            456788888887765     222  333  67777777777766 44     2  35566666666666664 333   3


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +++|++|+|++|.+++ +|.  +.  ++|+.|+|++|+|+
T Consensus       159 l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          159 PTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCS
T ss_pred             CCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCC
Confidence            4556666666666655 553  33  55666666666555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=7.2e-13  Score=106.94  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=44.6

Q ss_pred             CCCCCcEEECCCCccCcc-ccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCC-cCCCc-cchhhcc
Q 045715           98 PFEELQRLDLPMNWFTGI-YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYN-SIEGS-RTKQGLA  174 (199)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-ip~~~~~  174 (199)
                      .+++|++|++++|.+++. ++.    .+..+++|++|++++|++++..+..++.+++|++|++++| .+++. ++. .+.
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~  165 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLS  165 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHH
T ss_pred             cCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHh
Confidence            455555555555555443 333    4455555555555555555444455555555555555555 34431 232 344


Q ss_pred             CCCCCCEEeCcCC-ccC
Q 045715          175 KLKNLEALDLSSN-YYI  190 (199)
Q Consensus       175 ~l~~L~~L~Ls~N-~l~  190 (199)
                      .+++|++|++++| .++
T Consensus       166 ~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HCTTCCEEECCCCTTCC
T ss_pred             cCCCCCEEcCCCCCCcC
Confidence            5555555555555 444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=5.5e-12  Score=103.33  Aligned_cols=118  Identities=24%  Similarity=0.305  Sum_probs=68.4

Q ss_pred             CccceeccCCCccccccccccccccCC-CCCCcEEECCCCccCccccccchhhccCC-CCCCEEEcCCCCCCCCChhhhc
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHP-FEELQRLDLPMNWFTGIYENRAYDSFGSL-RQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      .++.|+|++|.+...+...+ ...+.. .++|++|+|++|.+++..+......+..+ ++|++|++++|++++..+..+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            45667777776665322111 111112 26777777777777765443111123344 6777777877777765554433


Q ss_pred             ----C-CCCCCEEecCCCcCCCc----cchhhccCCC-CCCEEeCcCCccCC
Q 045715          150 ----T-LTSLTTLNLRYNSIEGS----RTKQGLAKLK-NLEALDLSSNYYIH  191 (199)
Q Consensus       150 ----~-l~~L~~L~Ls~N~l~~~----ip~~~~~~l~-~L~~L~Ls~N~l~~  191 (199)
                          . .++|++|+|++|.+++.    ++. .+..++ +|+.|+|++|++++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQ-ILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHH-HHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHH-HHhcCCccccEeeecCCCCch
Confidence                3 25778888888777742    222 344554 78888888887763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.21  E-value=1.6e-11  Score=100.16  Aligned_cols=90  Identities=18%  Similarity=0.198  Sum_probs=76.4

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh-hhhcCCCCCCE-EecCCCcCCCccchhhccCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL-PYLNTLTSLTT-LNLRYNSIEGSRTKQGLAKLK  177 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~  177 (199)
                      +++++|+|++|+|+.+.+.    .|.++++|++|+|++|++.+.+| ..|.++++|+. +.++.|+++. ++++.|..++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            6799999999999986556    79999999999999999976555 46788988775 6677899998 7666899999


Q ss_pred             CCCEEeCcCCccCCCCcCC
Q 045715          178 NLEALDLSSNYYIHGSLEG  196 (199)
Q Consensus       178 ~L~~L~Ls~N~l~~~~ip~  196 (199)
                      +|++|++++|+++  .+|.
T Consensus       105 ~L~~L~l~~n~l~--~~~~  121 (350)
T 4ay9_X          105 NLQYLLISNTGIK--HLPD  121 (350)
T ss_dssp             TCCEEEEEEECCS--SCCC
T ss_pred             ccccccccccccc--cCCc
Confidence            9999999999998  4444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.21  E-value=1.3e-10  Score=98.19  Aligned_cols=83  Identities=25%  Similarity=0.240  Sum_probs=55.2

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..+++|++|++++|.+++ +      .+..+++|+.|++++|++++.   .++.+++|+.|++++|++++ +|   +..
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~  231 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-L------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTP  231 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-C------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTT
T ss_pred             cccCCcCCEEECCCCccce-e------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccc
Confidence            4456666777777776666 2      245566677777777777653   26667777777777777777 55   566


Q ss_pred             CCCCCEEeCcCCccCCC
Q 045715          176 LKNLEALDLSSNYYIHG  192 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~~~  192 (199)
                      +++|+.|++++|++++.
T Consensus       232 l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          232 LTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CTTCSEEECCSSCCSCC
T ss_pred             cCCCCEEEeeCCcCCCc
Confidence            77777777777777743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=8.7e-12  Score=102.78  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=78.4

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCc-----cccccchhhccCCCCCCEEEcCCCCCC----
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTG-----IYENRAYDSFGSLRQLKMLNLGNNDFN----  141 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~~~~~l~~L~~L~Ls~N~l~----  141 (199)
                      +.++.|++++|.+...+...+ ...+..+++|++|++++|.++.     ..+.    .+..+++|++|+|++|+++    
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~  233 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGS  233 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHH
Confidence            455666667766653222101 1345567788888888888772     2343    5677888888888888885    


Q ss_pred             CCChhhhcCCCCCCEEecCCCcCCCc----cchhhc--cCCCCCCEEeCcCCccC
Q 045715          142 DNILPYLNTLTSLTTLNLRYNSIEGS----RTKQGL--AKLKNLEALDLSSNYYI  190 (199)
Q Consensus       142 ~~~p~~~~~l~~L~~L~Ls~N~l~~~----ip~~~~--~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+|..+..+++|+.|+|++|.+++.    ++. .+  +.+++|+.|+|++|.++
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH-HHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHHHccCCCcCEEECCCCCCchhhHHHHHH-HHhhccCCCeEEEECcCCcCC
Confidence            45677778888888888888888763    343 45  34888888888888887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=2.6e-13  Score=102.13  Aligned_cols=87  Identities=26%  Similarity=0.377  Sum_probs=78.7

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .+..+++|++|++++|.+++ +|     .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|  .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccc
Confidence            67889999999999999998 55     6788999999999999999 678878888999999999999998 66  488


Q ss_pred             CCCCCCEEeCcCCccCC
Q 045715          175 KLKNLEALDLSSNYYIH  191 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~~  191 (199)
                      .+++|++|++++|++++
T Consensus       113 ~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHSSEEEESEEECCC
T ss_pred             cCCCCCEEECCCCcCCc
Confidence            89999999999999983

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.15  E-value=2.9e-10  Score=96.04  Aligned_cols=100  Identities=20%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      ++++|++++|.+..     ++  .|..+++|++|++++|++++ +|.    .+   .+|++|++++|++++ +| .++.+
T Consensus       132 ~L~~L~L~~n~l~~-----lp--~~~~l~~L~~L~l~~N~l~~-lp~----~~---~~L~~L~L~~n~l~~-l~-~~~~l  194 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-----LP--ELQNSSFLKIIDVDNNSLKK-LPD----LP---PSLEFIAAGNNQLEE-LP-ELQNL  194 (454)
T ss_dssp             TCCEEECCSSCCSS-----CC--CCTTCTTCCEEECCSSCCSC-CCC----CC---TTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CCCEEECcCCCCCC-----Cc--ccCCCCCCCEEECCCCcCcc-cCC----Cc---ccccEEECcCCcCCc-Cc-cccCC
Confidence            44566666666553     22  36677777777777777776 443    21   245555555555553 33 34444


Q ss_pred             CCCCEEecCCCcCCC-------------------ccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEG-------------------SRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~-------------------~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ++|++|++++|.+++                   .+|  .+..+++|+.|++++|+++
T Consensus       195 ~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          195 PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCC
Confidence            444444444444433                   144  2556666666666666666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.13  E-value=1.1e-11  Score=103.96  Aligned_cols=119  Identities=24%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC-
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT-  150 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-  150 (199)
                      .++.|++++|.+...+...+........++|++|++++|.+++.........+..+++|++|++++|++++..+..+.. 
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  364 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG  364 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence            3455666666554322211211122233577777777777765421101115667788888888888887554444432 


Q ss_pred             ----CCCCCEEecCCCcCCC----ccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 ----LTSLTTLNLRYNSIEG----SRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 ----l~~L~~L~Ls~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                          .++|++|+|++|.+++    .+|. .+..+++|+.|++++|++++
T Consensus       365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          365 LGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCCH
T ss_pred             HcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCCCCH
Confidence                6788899999988885    4665 67778889999999998873

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=3e-11  Score=98.89  Aligned_cols=114  Identities=18%  Similarity=0.227  Sum_probs=88.2

Q ss_pred             CccceeccCCCccccccccccccccCCCC-CCcEEECCCCccCccccccchhhccCC-----CCCCEEEcCCCCCCCCCh
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFE-ELQRLDLPMNWFTGIYENRAYDSFGSL-----RQLKMLNLGNNDFNDNIL  145 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p  145 (199)
                      +++.|++++|.+...+...+ ...|..++ +|++|+|++|.+++..+.    .+..+     ++|++|+|++|++++..+
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCCcCChHHH
Confidence            47889999999876332111 15677888 899999999999987666    55554     899999999999997777


Q ss_pred             hhhc----CC-CCCCEEecCCCcCCCccchhh----ccC-CCCCCEEeCcCCccCC
Q 045715          146 PYLN----TL-TSLTTLNLRYNSIEGSRTKQG----LAK-LKNLEALDLSSNYYIH  191 (199)
Q Consensus       146 ~~~~----~l-~~L~~L~Ls~N~l~~~ip~~~----~~~-l~~L~~L~Ls~N~l~~  191 (199)
                      ..+.    .+ ++|++|+|++|.+++ .+...    +.. .++|++|+|++|.+++
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            6544    44 899999999999988 44323    334 3699999999999984

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.11  E-value=5.9e-10  Score=94.13  Aligned_cols=81  Identities=22%  Similarity=0.201  Sum_probs=54.6

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .+..+++|++|++++|.+++ +|.    .   .++|++|++++|+++ .+| .++.+++|++|++++|++++ +|. .  
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~-l~~----~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~-~--  255 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKK-LPD----L---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD-L--  255 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSS-CCC----C---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS-C--
T ss_pred             cccCCCCCCEEECCCCcCCc-CCC----C---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc-c--
Confidence            46677777777777777776 443    2   246777777777776 455 37777888888888888877 654 2  


Q ss_pred             CCCCCCEEeCcCCccC
Q 045715          175 KLKNLEALDLSSNYYI  190 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~  190 (199)
                       +++|+.|++++|+++
T Consensus       256 -~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          256 -PPSLEALNVRDNYLT  270 (454)
T ss_dssp             -CTTCCEEECCSSCCS
T ss_pred             -ccccCEEECCCCccc
Confidence             356666666666666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.08  E-value=1.5e-11  Score=103.15  Aligned_cols=63  Identities=22%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCcc----ccccchhhccCCCCCCEEEcCCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGI----YENRAYDSFGSLRQLKMLNLGNNDF  140 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~l~~L~~L~Ls~N~l  140 (199)
                      +.|++++|.+...+...+.+..+..+++|++|++++|.++..    ++.    .+..+++|++|++++|.+
T Consensus       230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR----VLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH----HHHHCTTCCEEECTTCCC
T ss_pred             cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH----HHhhCCCcceEECCCCCC
Confidence            445555554443222222222223345555555555555542    222    333344444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=6.5e-10  Score=97.38  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=60.1

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      ++|+.|++++|.+++ +|.       .+++|+.|++++|+++ .+|.   .+++|+.|+|++|+++. +|. .+.++++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~-~l~~l~~L  286 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPE-SLIHLSSE  286 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCG-GGGGSCTT
T ss_pred             CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCH-HHhhcccc
Confidence            567777777777776 443       3467888888888887 3554   56788999999999985 886 78889999


Q ss_pred             CEEeCcCCccCC
Q 045715          180 EALDLSSNYYIH  191 (199)
Q Consensus       180 ~~L~Ls~N~l~~  191 (199)
                      +.|+|++|++++
T Consensus       287 ~~L~L~~N~l~~  298 (622)
T 3g06_A          287 TTVNLEGNPLSE  298 (622)
T ss_dssp             CEEECCSCCCCH
T ss_pred             CEEEecCCCCCC
Confidence            999999998873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.06  E-value=1.5e-11  Score=97.01  Aligned_cols=81  Identities=25%  Similarity=0.288  Sum_probs=57.8

Q ss_pred             CCCCCCcEEECCCCccCcc--ccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCC--CCCEEecCCCcCCCccch--
Q 045715           97 HPFEELQRLDLPMNWFTGI--YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLT--SLTTLNLRYNSIEGSRTK--  170 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~ip~--  170 (199)
                      .++++|+.|+|++|++++.  +|.    .+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+.+|.  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch
Confidence            3577888888888888873  344    566788888888888888754  2333333  788888888888775552  


Q ss_pred             ----hhccCCCCCCEEe
Q 045715          171 ----QGLAKLKNLEALD  183 (199)
Q Consensus       171 ----~~~~~l~~L~~L~  183 (199)
                          ..+..+++|+.||
T Consensus       241 ~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHCTTCCEES
T ss_pred             hHHHHHHHHCcccCeEC
Confidence                1366788888776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.05  E-value=1.5e-09  Score=95.16  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=54.2

Q ss_pred             CCCcEEECCCCccCccccccchhhcc--------------CCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFG--------------SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE  165 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~--------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  165 (199)
                      ++|+.|++++|.+++ +|.. ...+.              .+++|+.|++++|++++ +|   ..+++|+.|+|++|.|+
T Consensus       181 ~~L~~L~Ls~N~l~~-l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          181 SGLQELSVSDNQLAS-LPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCCCCC-CCCc-cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence            666777777777665 3320 00111              12567777777777774 44   44567788888888877


Q ss_pred             CccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          166 GSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       166 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      . +|.    .+++|+.|+|++|+|+  .+|..
T Consensus       255 ~-lp~----~~~~L~~L~Ls~N~L~--~lp~~  279 (622)
T 3g06_A          255 S-LPM----LPSGLLSLSVYRNQLT--RLPES  279 (622)
T ss_dssp             C-CCC----CCTTCCEEECCSSCCC--SCCGG
T ss_pred             c-CCc----ccccCcEEeCCCCCCC--cCCHH
Confidence            6 664    4677888888888887  56654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=7.2e-11  Score=97.37  Aligned_cols=116  Identities=22%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Chhhhc
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLN  149 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~  149 (199)
                      +.|+|++|.+...+...+........+.|+.|+|++|.++..........+..+++|++|+|++|+++..    ++..+.
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence            6778888887654432221111135678999999999887532221111457788899999999998642    244566


Q ss_pred             CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..++|++|+|++|.|+..    +.. .+...++|++|+|++|.|+
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALAR-AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHH-HHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHH-HHHhCCCCCEEeccCCCCC
Confidence            778899999999999762    222 3556788999999999987

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=3.1e-09  Score=85.78  Aligned_cols=92  Identities=20%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             CCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCC-EEecCCCcCCCccchhhccCCC
Q 045715           99 FEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT-TLNLRYNSIEGSRTKQGLAKLK  177 (199)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~ip~~~~~~l~  177 (199)
                      +++|+.++|++|.++.+.+.    .|.++.+|+.++|++| ++...+..|.++++|+ .+++.+ .++. |+...|.+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCc
Confidence            67899999999999986666    8999999999999998 7766667899999999 999988 7776 7777899999


Q ss_pred             CCCEEeCcCCccCCCCcCCCCC
Q 045715          178 NLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       178 ~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      +|+.++++.|.++  .|+...|
T Consensus       298 ~L~~l~l~~n~i~--~I~~~aF  317 (329)
T 3sb4_A          298 NLRYVLATGDKIT--TLGDELF  317 (329)
T ss_dssp             TEEEEEECSSCCC--EECTTTT
T ss_pred             cCCEEEeCCCccC--ccchhhh
Confidence            9999999999998  6766555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=2.4e-09  Score=86.43  Aligned_cols=103  Identities=13%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC-EEEcCCCCCCCCChhhh
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK-MLNLGNNDFNDNILPYL  148 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~  148 (199)
                      ..+++.++++.|++..     ++...|.++++|+.+++++| ++.+.+.    +|.++.+|+ .+++.+ .++...+..|
T Consensus       225 ~~~L~~l~L~~n~i~~-----I~~~aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~~aF  293 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-----IPDFTFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEFGAF  293 (329)
T ss_dssp             CTTCCEEECTTBCCCE-----ECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred             cCCCeEEECCCCCcce-----ecHhhhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEchhhh
Confidence            5678999999988876     77889999999999999998 7876666    899999999 999998 7776667889


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDL  184 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L  184 (199)
                      .++++|+.++++.|.++. ++...|.++++|+.++.
T Consensus       294 ~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred             hCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence            999999999999999998 88778999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=4.2e-10  Score=83.89  Aligned_cols=118  Identities=12%  Similarity=0.036  Sum_probs=86.4

Q ss_pred             CCccceeccCC-CccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Ch
Q 045715           71 NYTTKFNYSYN-SVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----IL  145 (199)
Q Consensus        71 ~~~~~L~ls~N-~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p  145 (199)
                      ..++.|+|++| .+...+...+ ...+...++|++|+|++|.+...-.......+...+.|++|+|++|.++..    +.
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            45677888888 8876554323 344567789999999999998632211112556678999999999999743    34


Q ss_pred             hhhcCCCCCCEEec--CCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          146 PYLNTLTSLTTLNL--RYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       146 ~~~~~l~~L~~L~L--s~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+...++|++|+|  ++|.+...    +.. .+...++|+.|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            45677789999999  88999862    222 4566789999999999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.89  E-value=2.7e-10  Score=93.95  Aligned_cols=115  Identities=20%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhc-cCCCCCCEEEcCCCCCCCC----Chh
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSF-GSLRQLKMLNLGNNDFNDN----ILP  146 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~l~~L~~L~Ls~N~l~~~----~p~  146 (199)
                      .++.|+|++|.+...+..    .....+++|+.|+|++|.++..........+ ...+.|++|+|++|.++..    ++.
T Consensus       102 ~L~~L~Ls~n~l~~~~~~----~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~  177 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLR----TLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME  177 (372)
T ss_dssp             CEEEEECTTCCCCHHHHH----HTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred             CceEEEecCCCCCHHHHH----HHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence            345677777777653331    1122345788899999988764333000122 3467899999999998642    334


Q ss_pred             hhcCCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccCC
Q 045715          147 YLNTLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       147 ~~~~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+..+++|++|+|++|.++..    ++. .+...++|+.|+|++|.|++
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCH
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCH
Confidence            457788999999999998752    232 56778899999999999873

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.83  E-value=4.9e-09  Score=82.56  Aligned_cols=136  Identities=18%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             CCCCCCceEecCCCCCeEEEecCCc------------------cceeccCCCccccccccccccccCCCCCCcE--EECC
Q 045715           49 CCDDWVGVKCSATTRRVMQLSLNYT------------------TKFNYSYNSVYWEGVLVLNMSLFHPFEELQR--LDLP  108 (199)
Q Consensus        49 ~c~~w~gv~C~~~~~~v~~l~l~~~------------------~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~--L~Ls  108 (199)
                      .| .|.|+.|+....+|+.+..++.                  ..+..++|..+.    .++.+.|...+.|..  ++++
T Consensus        77 l~-~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~----~LdLs~l~~dp~L~~~~l~l~  151 (267)
T 3rw6_A           77 LK-AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQ----ALDLKGLRSDPDLVAQNIDVV  151 (267)
T ss_dssp             HH-HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTT----EEECTTGGGCHHHHHTTCCCC
T ss_pred             HH-hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhcc----ccCHHHcCCCcchhhcCcccc
Confidence            46 8999999875556644433221                  122233333322    133444555666666  7788


Q ss_pred             CCccCccccccchhhccCCCCCCEEEcCCCCCCC--CChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcC
Q 045715          109 MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND--NILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS  186 (199)
Q Consensus       109 ~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~  186 (199)
                      .|.... ++.........+++|+.|+|++|++++  .++..+..+++|+.|+|++|+|++.-....+..+ +|+.|+|++
T Consensus       152 ~N~~~~-~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~  229 (267)
T 3rw6_A          152 LNRRSC-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDG  229 (267)
T ss_dssp             TTSHHH-HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTT
T ss_pred             CCHHHH-HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccC
Confidence            885432 222000023568899999999999997  3456778899999999999999983122233444 999999999


Q ss_pred             CccCC
Q 045715          187 NYYIH  191 (199)
Q Consensus       187 N~l~~  191 (199)
                      |.+++
T Consensus       230 Npl~~  234 (267)
T 3rw6_A          230 NSLCD  234 (267)
T ss_dssp             STTGG
T ss_pred             CcCcc
Confidence            99983

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.67  E-value=3.5e-09  Score=91.39  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             cCCCCCCcEEECCCCc--cCccccccchhhcc-CCCCCCEEEcCCCCCCCC-ChhhhcCCCCCCEEecCCCcCCCccchh
Q 045715           96 FHPFEELQRLDLPMNW--FTGIYENRAYDSFG-SLRQLKMLNLGNNDFNDN-ILPYLNTLTSLTTLNLRYNSIEGSRTKQ  171 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~ip~~  171 (199)
                      +..+++|++|+++++.  +++..+.    .+. .+++|++|++++|++++. ++..+..+++|++|+|++|.+++.....
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            4457788888886533  5554333    343 478899999999998753 3455678999999999999987643332


Q ss_pred             hccCCCCCCEEeCcCCccCCC
Q 045715          172 GLAKLKNLEALDLSSNYYIHG  192 (199)
Q Consensus       172 ~~~~l~~L~~L~Ls~N~l~~~  192 (199)
                      .+..+++|+.|+|++|++++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            456789999999999999854

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.52  E-value=9.7e-09  Score=88.58  Aligned_cols=90  Identities=20%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccC-CCCCCEEEcCCCCCCCCChhhh-cCCCCCCEEecCCCcCCCccchhhc
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGS-LRQLKMLNLGNNDFNDNILPYL-NTLTSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      +..+++|+.|++++ .+++....    .+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++......+
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~----~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~  502 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFE----YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA  502 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHH----HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred             HhhCCCccEEeecC-cccHHHHH----HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence            45677888888877 56554443    4544 7889999999999875555444 6688999999999998653332234


Q ss_pred             cCCCCCCEEeCcCCccC
Q 045715          174 AKLKNLEALDLSSNYYI  190 (199)
Q Consensus       174 ~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|+.|++++|+++
T Consensus       503 ~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          503 SKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             GGGGGSSEEEEESSCCB
T ss_pred             HhCCCCCEEeeeCCCCC
Confidence            56889999999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.47  E-value=1.1e-07  Score=70.60  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             ccccCCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCCC----hhhhcCCCCCCEEecCCCcCCCc
Q 045715           93 MSLFHPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI----LPYLNTLTSLTTLNLRYNSIEGS  167 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~  167 (199)
                      ...+...+.|++|+|++| .+...-.......+...++|++|+|++|++....    ...+...++|++|+|++|.|...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345667899999999999 8875322111225677899999999999997432    33455668999999999999862


Q ss_pred             ----cchhhccCCCCCCEEeC--cCCccC
Q 045715          168 ----RTKQGLAKLKNLEALDL--SSNYYI  190 (199)
Q Consensus       168 ----ip~~~~~~l~~L~~L~L--s~N~l~  190 (199)
                          +.. .+...++|++|+|  ++|.|+
T Consensus       109 g~~~l~~-~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          109 GILALVE-ALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHH-GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHH-HHHhCCCceEEEecCCCCCCC
Confidence                233 5777889999999  889987

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.39  E-value=1.1e-06  Score=73.09  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=70.3

Q ss_pred             ccccccCCCCCCcEEECCCCccC-----ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715           91 LNMSLFHPFEELQRLDLPMNWFT-----GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE  165 (199)
Q Consensus        91 l~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  165 (199)
                      +....|.++++|+.+++.+|.+.     .+.+.    .|.++++|+.+.+. +.++......|.++++|+.+.|..| ++
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence            45667788888888888887765     33344    78888888888888 4466555667888889999998655 65


Q ss_pred             CccchhhccCCCCCCEEeCcCCccC
Q 045715          166 GSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       166 ~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      . ++...|.++ +|+.+++.+|.+.
T Consensus       336 ~-I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          336 Q-INFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             E-ECTTSSSSS-CCCEEEECCSSCC
T ss_pred             E-EcHHhCCCC-CCCEEEEcCCCCc
Confidence            5 666678888 8999999988876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.35  E-value=4.4e-07  Score=78.18  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=45.7

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ++++++|+|++|.+...+.. .....+..+++|++|++++|.+++..+......+..+++|++|++++|.+.+ ++..+.
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGK-WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSH-HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             CCCCCEEECccccccCcchh-HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            46778888888876543210 0122334566777777777776632111000134556667777777666543 333344


Q ss_pred             CCCCCCEEec
Q 045715          150 TLTSLTTLNL  159 (199)
Q Consensus       150 ~l~~L~~L~L  159 (199)
                      .+++|+.|++
T Consensus       241 ~~~~L~~L~l  250 (592)
T 3ogk_B          241 AAANLEEFCG  250 (592)
T ss_dssp             HCTTCCEEEE
T ss_pred             hhhHHHhhcc
Confidence            4444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.26  E-value=2.2e-07  Score=80.02  Aligned_cols=61  Identities=30%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             CCCCcEEECCCC-ccCcc-ccccchhhccCCCCCCEEEcCCCCCCCCChhhhc----CCCCCCEEecCCCc
Q 045715           99 FEELQRLDLPMN-WFTGI-YENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN----TLTSLTTLNLRYNS  163 (199)
Q Consensus        99 l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~Ls~N~  163 (199)
                      +++|++|++++| .++.. ++.    .+..+++|++|++++|.+++..+..+.    .+++|++|++++|.
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAA----IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHH----HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             CCCCcEEeCCCcCCCCHHHHHH----HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            455555555555 33221 111    223455555555555555443333222    34455555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.24  E-value=4.6e-07  Score=66.82  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=43.2

Q ss_pred             CCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCC-CCCCChhhhcCC----CCCCEEecCCCc-CCCccchhhcc
Q 045715          101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNND-FNDNILPYLNTL----TSLTTLNLRYNS-IEGSRTKQGLA  174 (199)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~ip~~~~~  174 (199)
                      +|+.||++++.++..--.    .+..+++|++|+|+++. ++..--..++.+    ++|++|+|+++. ++.. -...+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGG
T ss_pred             eEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHh
Confidence            466666666665543222    45566666666666663 443333344443    246666666653 5431 112345


Q ss_pred             CCCCCCEEeCcCC
Q 045715          175 KLKNLEALDLSSN  187 (199)
Q Consensus       175 ~l~~L~~L~Ls~N  187 (199)
                      .+++|++|+++++
T Consensus       137 ~~~~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFRNLKYLFLSDL  149 (176)
T ss_dssp             GCTTCCEEEEESC
T ss_pred             cCCCCCEEECCCC
Confidence            5666666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.13  E-value=7.3e-06  Score=68.01  Aligned_cols=65  Identities=17%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             hccCCCCCCEEEcCCCCCC-----CCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          123 SFGSLRQLKMLNLGNNDFN-----DNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       123 ~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|..+++|+.+.+.+|.+.     ......|.++++|+.+.|.+ .++. ++...|.++++|+.+.|..| ++
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~-I~~~aF~~c~~L~~l~lp~~-l~  335 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRI-LGQGLLGGNRKVTQLTIPAN-VT  335 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCE-ECTTTTTTCCSCCEEEECTT-CC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEE-EhhhhhcCCCCccEEEECcc-cc
Confidence            6777777777777776654     23345677777888888773 4655 66667777888888887554 44

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=5.4e-07  Score=73.94  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=69.1

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCC--CccCccc-cccchhhc--cCCCCCCEEEcCCCCCCCCC
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM--NWFTGIY-ENRAYDSF--GSLRQLKMLNLGNNDFNDNI  144 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~--N~l~~~~-p~~~~~~~--~~l~~L~~L~Ls~N~l~~~~  144 (199)
                      +++++.|++..+.+...+...+   ....+++|+.|+|+.  |...+.. .......+  ..+++|++|+|.+|.++...
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l---~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDI---LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHH---HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHH---HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence            4556666666665544222111   112578888888753  2211110 00000022  24788999999988886433


Q ss_pred             hhhhc---CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          145 LPYLN---TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       145 p~~~~---~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+.   .+++|++|+|+.|.+.+.    ++. .+..+++|+.|+|++|.|+
T Consensus       269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          269 VEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred             HHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence            33332   577899999999988762    222 2345788999999999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=3e-06  Score=62.40  Aligned_cols=85  Identities=9%  Similarity=0.098  Sum_probs=63.2

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCc-cCccccccchhhccCC----CCCCEEEcCCCC-CCCCChh
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNW-FTGIYENRAYDSFGSL----RQLKMLNLGNND-FNDNILP  146 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~  146 (199)
                      ++.||++++.++..|+     ..+..+++|+.|+|+++. +++.--.    .+..+    ++|++|+|+++. ++..--.
T Consensus        63 L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~----~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLE----RLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             EEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHH----HHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             EeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHH----HHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            4566777777776554     235689999999999995 6653222    56654    479999999985 8755556


Q ss_pred             hhcCCCCCCEEecCCCc-CCC
Q 045715          147 YLNTLTSLTTLNLRYNS-IEG  166 (199)
Q Consensus       147 ~~~~l~~L~~L~Ls~N~-l~~  166 (199)
                      .+..+++|+.|+|+++. ++.
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCC
T ss_pred             HHhcCCCCCEEECCCCCCCCc
Confidence            78889999999999986 544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.86  E-value=7.3e-06  Score=61.44  Aligned_cols=116  Identities=11%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             CccceeccCC-CccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh----h
Q 045715           72 YTTKFNYSYN-SVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL----P  146 (199)
Q Consensus        72 ~~~~L~ls~N-~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~  146 (199)
                      .++.|+|++| .+...|...+ ...+..-+.|+.|+|++|.+...-.....+.+..-+.|++|+|++|.|+..-.    .
T Consensus        42 ~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            3466777764 7766554322 34556678999999999999864322111245567889999999999974322    2


Q ss_pred             hhcCCCCCCEEecCCCc---CCC----ccchhhccCCCCCCEEeCcCCcc
Q 045715          147 YLNTLTSLTTLNLRYNS---IEG----SRTKQGLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       147 ~~~~l~~L~~L~Ls~N~---l~~----~ip~~~~~~l~~L~~L~Ls~N~l  189 (199)
                      .+..-+.|+.|+|++|.   +..    .+.. .+..-++|+.|+++.|.+
T Consensus       121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence            34555779999998653   332    1222 466678999999987764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.82  E-value=1.4e-05  Score=65.51  Aligned_cols=88  Identities=17%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             CCCCcEEECCCCccCccccccchhhcc--CCCCCCEEEcCC--CCCCCC-----Chhhh--cCCCCCCEEecCCCcCCCc
Q 045715           99 FEELQRLDLPMNWFTGIYENRAYDSFG--SLRQLKMLNLGN--NDFNDN-----ILPYL--NTLTSLTTLNLRYNSIEGS  167 (199)
Q Consensus        99 l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~  167 (199)
                      +++|+.|+|..+.++.....    .+.  .+++|++|+|+.  |...+.     +...+  ..+++|++|+|++|.+...
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~----~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~  267 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVE----DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV  267 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHH----HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred             CCCCcEEEEecCCCChHHHH----HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence            67778888777766543222    343  688999998853  222111     11222  2578999999999988753


Q ss_pred             cchhhc---cCCCCCCEEeCcCCccCC
Q 045715          168 RTKQGL---AKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       168 ip~~~~---~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+. .+   ..+++|++|+|+.|.|++
T Consensus       268 ~~~-~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          268 VVE-MFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHH-HHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHH-HHHhCccCCCCCEEECCCCCCCh
Confidence            332 22   257899999999999874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.76  E-value=6.1e-05  Score=52.56  Aligned_cols=57  Identities=21%  Similarity=0.155  Sum_probs=44.0

Q ss_pred             cEEECCCCccC-ccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCC
Q 045715          103 QRLDLPMNWFT-GIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIE  165 (199)
Q Consensus       103 ~~L~Ls~N~l~-~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  165 (199)
                      ..++.+++.++ ..+|.    .+  ..+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888887 22665    33  346889999999998666677888889999999998875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.62  E-value=0.00021  Score=58.16  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=61.8

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ...|.+...|+.+.+..+ ++.....    .|..+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++. |....
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a  328 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT-IQVYA  328 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTT
T ss_pred             ccccceeehhcccccccc-ceecccc----ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE-EHHHH
Confidence            445666677777777543 4443333    6778888888888888777555667888888888888654 555 66667


Q ss_pred             ccCCCCCCEEeCcCC
Q 045715          173 LAKLKNLEALDLSSN  187 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N  187 (199)
                      |.++.+|+.+.+..+
T Consensus       329 F~~C~~L~~i~ip~~  343 (379)
T 4h09_A          329 FKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTCTTCCCCCCCTT
T ss_pred             hhCCCCCCEEEECCc
Confidence            888888888877544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.57  E-value=0.0002  Score=49.87  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=33.8

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFN  141 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~  141 (199)
                      ++|++|+|++|+|+.+.+.    .|..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPG----LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTT----TGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChh----hhhhccccCEEEecCCCee
Confidence            4699999999999996666    7889999999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.50  E-value=0.00071  Score=55.49  Aligned_cols=88  Identities=13%  Similarity=0.215  Sum_probs=63.2

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ...|.+.+.|+.+.+. +.++.+-..    +|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++. |....
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~~~a  352 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPES----VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IPESA  352 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CCGGG
T ss_pred             CcccccccccccccCC-CcccccCce----eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-EhHhH
Confidence            4556677778877775 345554444    7888888888888764 55344567888888888888654 555 66667


Q ss_pred             ccCCCCCCEEeCcCCc
Q 045715          173 LAKLKNLEALDLSSNY  188 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~  188 (199)
                      |.++++|+.+++.++.
T Consensus       353 F~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          353 FSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GTTCTTCCEEEESSCH
T ss_pred             hhCCCCCCEEEECCce
Confidence            8888888888887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=0.00013  Score=54.56  Aligned_cols=93  Identities=12%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             ccCCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCC----ChhhhcCCCCCCEEecCCCcCCCc--
Q 045715           95 LFHPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSIEGS--  167 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~--  167 (199)
                      .+.+-+.|+.|+|++| .+...--....+.+..-..|+.|+|++|++...    +...+..-+.|+.|+|++|.|...  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            4456688999999986 776431111223677788999999999999733    233445568899999999999862  


Q ss_pred             --cchhhccCCCCCCEEeCcCCc
Q 045715          168 --RTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       168 --ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                        +-. .+..-+.|+.|+|++|.
T Consensus       116 ~ala~-aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          116 ARLLR-STLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHH-HTTTTCCCSEEECCCCS
T ss_pred             HHHHH-HHhhCCceeEEECCCCc
Confidence              222 46677889999998753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.30  E-value=0.00049  Score=56.49  Aligned_cols=87  Identities=18%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ...|.....|+.+.+..+ ++.+-..    +|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..| ++. |+...
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~a  361 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK-IGANA  361 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTT
T ss_pred             cccccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE-ehHHH
Confidence            345666778888887654 5554444    7888899999998754 65455667889999999999876 665 77778


Q ss_pred             ccCCCCCCEEeCcCC
Q 045715          173 LAKLKNLEALDLSSN  187 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N  187 (199)
                      |.++++|+.+++..+
T Consensus       362 F~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          362 FQGCINLKKVELPKR  376 (394)
T ss_dssp             BTTCTTCCEEEEEGG
T ss_pred             hhCCCCCCEEEECCC
Confidence            999999999988754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.21  E-value=0.001  Score=54.56  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             ccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 045715           91 LNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK  170 (199)
Q Consensus        91 l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  170 (199)
                      +....|.++.+|+.++|..+ ++.+-..    +|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.++....    
T Consensus       302 I~~~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----  371 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEG-ITQILDD----AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----  371 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----
T ss_pred             cCceeecCCCCcCEEEeCCc-ccEehHh----HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----
Confidence            55678889999999999865 6665555    8999999999999765 665567789999999999999876532    


Q ss_pred             hhccCCCCCCEEeCcCCccC
Q 045715          171 QGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       171 ~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      ..+.....|+.+.+..|.+.
T Consensus       372 ~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          372 NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             HTCBCCCCC-----------
T ss_pred             hhhhccCCCCEEEeCCCCEE
Confidence            25777889999988877664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.21  E-value=0.0013  Score=53.49  Aligned_cols=88  Identities=18%  Similarity=0.191  Sum_probs=66.1

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      ...|.....|+.+.+..+ ++.+-..    .|..+.+|+.+.+..+ ++......|.++.+|+.+.+.++.++. |+...
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~----aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~a  305 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSF----LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRV  305 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTT----TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTT
T ss_pred             cccccCCccceEEEcCCC-ccEeCcc----ccceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhh
Confidence            345566677777777665 5554444    7778888888888654 443445578899999999999988887 77778


Q ss_pred             ccCCCCCCEEeCcCC
Q 045715          173 LAKLKNLEALDLSSN  187 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N  187 (199)
                      |.++.+|+.+.|..+
T Consensus       306 F~~c~~L~~i~lp~~  320 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTCTTCCEEECCTT
T ss_pred             hcCCCCCCEEEcCcc
Confidence            999999999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.91  E-value=0.004  Score=50.99  Aligned_cols=92  Identities=18%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ..|.....++.+....+.+.   ..    .|..+.+|+.+.+..+ ++..-...|.++.+|+.++|..+ ++. |+...|
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~---~~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I~~~aF  339 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVP---EK----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-IGKRSF  339 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEEC---TT----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTT
T ss_pred             cccccccccceeccCceeec---cc----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-EhHHhc
Confidence            34444555555554443322   12    6777888999998765 55445667889999999999754 665 777789


Q ss_pred             cCCCCCCEEeCcCCccCCCCcCCCC
Q 045715          174 AKLKNLEALDLSSNYYIHGSLEGNF  198 (199)
Q Consensus       174 ~~l~~L~~L~Ls~N~l~~~~ip~~~  198 (199)
                      .++.+|+.+.+..| ++  .|++.-
T Consensus       340 ~~c~~L~~i~lp~~-l~--~I~~~a  361 (394)
T 4fs7_A          340 RGCTSLSNINFPLS-LR--KIGANA  361 (394)
T ss_dssp             TTCTTCCEECCCTT-CC--EECTTT
T ss_pred             cCCCCCCEEEECcc-cc--EehHHH
Confidence            99999999999876 55  454443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 92  NMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL 151
           ++S     + L  L L  N  + I          SL +L+ L   NN  +D  +  L  L
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDI------SPVSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           T++  L+  +N I        LA L  +  L L+  
Sbjct: 351 TNINWLSAGHNQISDL---TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 7e-07
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 88  VLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY 147
            L L  +       L  L    N      +        +L+ L  L L  N+ +D  +  
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISP 324

Query: 148 LNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
           +++LT L  L    N +        LA L N+  L    N
Sbjct: 325 VSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHN 361

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 9e-06
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 15/69 (21%)

Query: 7  CLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCDD-WVGVKCSATTR-- 63
          C   ++ ALL+IK           +   L SW+       +DCC+  W+GV C   T+  
Sbjct: 3  CNPQDKQALLQIKKDLG-------NPTTLSSWLPT-----TDCCNRTWLGVLCDTDTQTY 50

Query: 64 RVMQLSLNY 72
          RV  L L+ 
Sbjct: 51 RVNNLDLSG 59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 2/138 (1%)

Query: 50  CDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPM 109
            D +       T+  + +  L       ++  ++ +  +    +            +   
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 110 NWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRT 169
                          G  + L  L+L NN     +   L  L  L +LN+ +N++ G   
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 170 KQGLAKLKNLEALDLSSN 187
           +     L+  +    ++N
Sbjct: 286 Q--GGNLQRFDVSAYANN 301

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 101 ELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFND----NILPYLNTLTSLTT 156
           ++Q LD+     +   + R  +    L+Q +++ L +    +    +I   L    +L  
Sbjct: 3   DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 157 LNLRYNSIEGSRTKQGLAKLK----NLEALDLSSNYYIH 191
           LNLR N +        L  L+     ++ L L +     
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-05
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 5/116 (4%)

Query: 76  FNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNL 135
              S N +   GV  L   L  P   L+ L L     +    +    +  +   L+ L+L
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404

Query: 136 GNNDFNDNILPYL-----NTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186
            NN   D  +  L          L  L L           +  A  K+  +L + S
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 5/141 (3%)

Query: 45  MPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQR 104
           +             +           +           +    VL L+++       L  
Sbjct: 90  LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAG 149

Query: 105 LDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSI 164
           L        G  +        +L +L  L   +N  +D  +  L +L +L  ++L+ N I
Sbjct: 150 LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI 207

Query: 165 EGSRTKQGLAKLKNLEALDLS 185
                   LA   NL  + L+
Sbjct: 208 SDV---SPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
           +L     +  G ++  D +      L  +TTL+     +    T +G+  L NL  L+L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 186 SNYYIHGSLEGNFF 199
            N     +   N  
Sbjct: 72  DNQITDLAPLKNLT 85

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 +  LDL  N    +       +  +LR L++L    +D     +  +  L  L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQ--ASDNALENVDGVANLPRLQ 68

Query: 156 TLNLRYNSIEGSRTKQGLAKLKNLEALDLSSN 187
            L L  N ++ S   Q L     L  L+L  N
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 102 LQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY 161
              LDL  N  T I +      F +L+ L  L L NN  +         L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 162 NSIEG 166
           N ++ 
Sbjct: 89  NQLKE 93

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 126 SLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLS 185
           +  +    NL      D +    N L S+  +    + I+     QG+  L N+  L L+
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN 76

Query: 186 SN 187
            N
Sbjct: 77  GN 78

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 109 MNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSR 168
                 +  N+  D     R  K+  L   D   + +  L  LT L  L L  N I    
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS--- 191

Query: 169 TKQGLAKLKNLEALDLSS 186
             + LA LKNL+ L+L S
Sbjct: 192 DLRALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 7e-04
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 128 RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK---QGLAKLKNLEALDL 184
           + LK+  +   D   ++   L    S+  + L  N+I     +   + +A  K+LE  + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 185 SSNYYIHGSLEG 196
           S  +      E 
Sbjct: 67  SDIFTGRVKDEI 78

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 9e-04
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 127 LRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSS 186
           L +     LG  +  D +      L  +TTL      I   ++  G+  L NL  ++ S+
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSN 71

Query: 187 NYYIH 191
           N    
Sbjct: 72  NQLTD 76

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 103 QRLDLPMNWFTGIYENRAYDSFGSL--RQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLR 160
           Q LDL              D  G L  + +       + F D  L    +   +  ++L 
Sbjct: 3   QTLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLS 54

Query: 161 YNSIEGSRTKQGLAKLKNLEALDLSSN 187
            + IE S     L++   L+ L L   
Sbjct: 55  NSVIEVSTLHGILSQCSKLQNLSLEGL 81

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 12/131 (9%)

Query: 36  PSWVGEDDGMPSDCCDDWVGVKCSATTRRVMQLSLNYTTKFNYSYNSVYWEGVLVLNMSL 95
           P      + +           +   +   +      ++       N  Y         SL
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 96  FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLT 155
                 L+ L++  N    +             +L+ L    N   +  +P      +L 
Sbjct: 280 CDLPPSLEELNVSNNKLIEL--------PALPPRLERLIASFNHLAE--VP--ELPQNLK 327

Query: 156 TLNLRYNSIEG 166
            L++ YN +  
Sbjct: 328 QLHVEYNPLRE 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.51
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.28
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.02
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.22

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=4.6e-28  Score=193.52  Aligned_cols=163  Identities=26%  Similarity=0.452  Sum_probs=127.3

Q ss_pred             CCcHHhHHHHHHHHhccccCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCceEecCCC--CCeEEEecCCccceeccCCC
Q 045715            6 GCLETERTALLEIKSFFISVSDIGYDDKILPSWVGEDDGMPSDCCD-DWVGVKCSATT--RRVMQLSLNYTTKFNYSYNS   82 (199)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~c~-~w~gv~C~~~~--~~v~~l~l~~~~~L~ls~N~   82 (199)
                      -|.++|++||++||+++.+|.       .+++|..     .+|||. .|.||+|+...  .||++++|.+        |.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-------~l~sW~~-----~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~--------~~   61 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LN   61 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCT-----TSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-------cCCCCCC-----CCCCCCCcCCCeEEeCCCCcEEEEEEECCC--------CC
Confidence            399999999999999998775       6899986     679993 49999998643  3788777765        33


Q ss_pred             ccccccccccccccCCCCCCcEEECCC-CccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCC
Q 045715           83 VYWEGVLVLNMSLFHPFEELQRLDLPM-NWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRY  161 (199)
Q Consensus        83 ~~~~~~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  161 (199)
                      +..  ...+ +..+.++++|++|+|++ |+++|.+|.    .|+.+++|++|+|++|++.+..+..+..+.+|+.++++.
T Consensus        62 l~g--~~~l-p~~l~~L~~L~~L~Ls~~N~l~g~iP~----~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          62 LPK--PYPI-PSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             CSS--CEEC-CGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             CCC--CCCC-ChHHhcCcccccccccccccccccccc----ccccccccchhhhccccccccccccccchhhhccccccc
Confidence            332  2112 55677888888888886 788887887    888888888888888888877777788888888888888


Q ss_pred             CcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCC
Q 045715          162 NSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGN  197 (199)
Q Consensus       162 N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~  197 (199)
                      |.+.+.+|. .+.+++.|+.+++++|.++ +.+|..
T Consensus       135 N~~~~~~p~-~l~~l~~L~~l~l~~n~l~-~~ip~~  168 (313)
T d1ogqa_         135 NALSGTLPP-SISSLPNLVGITFDGNRIS-GAIPDS  168 (313)
T ss_dssp             SEEESCCCG-GGGGCTTCCEEECCSSCCE-EECCGG
T ss_pred             ccccccCch-hhccCcccceeeccccccc-cccccc
Confidence            888877776 7888888888888888887 445643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.4e-19  Score=134.59  Aligned_cols=131  Identities=27%  Similarity=0.343  Sum_probs=112.1

Q ss_pred             CCCCCceEecCCCCCeEEEec-CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCC
Q 045715           50 CDDWVGVKCSATTRRVMQLSL-NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLR  128 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l~l-~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~  128 (199)
                      | .|..|.|.+...+...-++ .++++|+|++|.++..    +....|..+++|+.|+|++|.+....+.    .|..++
T Consensus         8 C-~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~----~~~~~f~~l~~L~~L~L~~N~i~~~~~~----~~~~~~   78 (192)
T d1w8aa_           8 C-EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGIEPN----AFEGAS   78 (192)
T ss_dssp             E-ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCBCTT----TTTTCT
T ss_pred             E-cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccc----ccccccCCCceEeeeecccccccccccc----cccccc
Confidence            5 7999999764322111123 4789999999999641    4467788999999999999999998887    999999


Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +|++|+|++|+++...+..|.++++|++|+|++|+|++ +|++.|..+++|++|+|++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccccc
Confidence            99999999999998778889999999999999999999 77778999999999999999997

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.9e-17  Score=112.22  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=89.9

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      ++|++++|.++.     +  +.+..+++|++|++++|.++. +|.    .+..+++|++|++++|+++. +| .+..+++
T Consensus         1 R~L~Ls~n~l~~-----l--~~l~~l~~L~~L~ls~N~l~~-lp~----~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTV-----L--CHLEQLLLVTHLDLSHNRLRA-LPP----ALAALRCLEVLQASDNALEN-VD-GVANLPR   66 (124)
T ss_dssp             SEEECTTSCCSS-----C--CCGGGGTTCCEEECCSSCCCC-CCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred             CEEEcCCCCCCC-----C--cccccCCCCCEEECCCCccCc-chh----hhhhhhcccccccccccccc-cC-ccccccc
Confidence            578999999986     3  347889999999999999997 677    89999999999999999994 44 5899999


Q ss_pred             CCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccCC
Q 045715          154 LTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      |+.|++++|+++. ++. ..+..+++|+.|++++|+++.
T Consensus        67 L~~L~l~~N~i~~-~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          67 LQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCeEECCCCccCC-CCCchhhcCCCCCCEEECCCCcCCc
Confidence            9999999999997 542 368899999999999999983

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=1.2e-16  Score=118.35  Aligned_cols=110  Identities=19%  Similarity=0.165  Sum_probs=91.8

Q ss_pred             ceeccCCCccccccccccccccCCCCCCcEEECCCCccCccc-cccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           75 KFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIY-ENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        75 ~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +++.+++.++.     ++.. +  .+.+++|+|++|+|+..+ +.    .|..+++|++|+|++|++....+..|..+++
T Consensus        12 ~v~Cs~~~L~~-----iP~~-l--p~~l~~L~Ls~N~i~~~~~~~----~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          12 TVDCTGRGLKE-----IPRD-I--PLHTTELLLNDNELGRISSDG----LFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             EEECTTSCCSS-----CCSC-C--CTTCSEEECCSCCCCSBCCSC----SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             EEEEeCCCcCc-----cCCC-C--CCCCCEEEeCCCCCccccccc----ccCCCceEeeeeccccccccccccccccccc
Confidence            35556666654     4333 2  268999999999998755 44    7889999999999999999888999999999


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      |++|+|++|+++. +|+..|.++++|++|+|++|+|+  .+|...|
T Consensus        80 L~~L~Ls~N~l~~-l~~~~F~~l~~L~~L~L~~N~l~--~i~~~~f  122 (192)
T d1w8aa_          80 IQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQIS--CVMPGSF  122 (192)
T ss_dssp             CCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCC--EECTTSS
T ss_pred             cceeeeccccccc-cCHHHHhCCCcccccccCCcccc--ccCHHHh
Confidence            9999999999998 77768999999999999999999  6666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.1e-15  Score=115.97  Aligned_cols=98  Identities=26%  Similarity=0.313  Sum_probs=67.5

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .+..+++|++|++++|.+....+.    .+..+.++++|++++|.++...+..+..++.|+.+++++|++++ ++...|.
T Consensus        95 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~  169 (266)
T d1p9ag_          95 LGQTLPALTVLDVSFNRLTSLPLG----ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN  169 (266)
T ss_dssp             CTTTCTTCCEEECCSSCCCCCCSS----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTT
T ss_pred             ccccccccccccccccccceeecc----ccccccccccccccccccceeccccccccccchhcccccccccc-cCccccc
Confidence            344455555555555555544443    55566666667777777765555666777888888888888887 6655678


Q ss_pred             CCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          175 KLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      .+++|++|+|++|+|+  .+|+.+|
T Consensus       170 ~l~~L~~L~Ls~N~L~--~lp~~~~  192 (266)
T d1p9ag_         170 GLENLDTLLLQENSLY--TIPKGFF  192 (266)
T ss_dssp             TCTTCCEEECCSSCCC--CCCTTTT
T ss_pred             cccccceeecccCCCc--ccChhHC
Confidence            8888888888888888  6777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-15  Score=117.06  Aligned_cols=122  Identities=26%  Similarity=0.373  Sum_probs=75.3

Q ss_pred             ceEecCCCCCeEEE--ec-CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCC
Q 045715           55 GVKCSATTRRVMQL--SL-NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLK  131 (199)
Q Consensus        55 gv~C~~~~~~v~~l--~l-~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~  131 (199)
                      -|.|.+..  ++++  ++ .++++|+|++|.++.     +++..|.++++|++|+|++|.++. +|     .+..+++|+
T Consensus        14 ~v~C~~~~--L~~iP~~lp~~l~~L~Ls~N~i~~-----l~~~~f~~l~~L~~L~L~~N~l~~-l~-----~~~~l~~L~   80 (266)
T d1p9ag_          14 EVNCDKRN--LTALPPDLPKDTTILHLSENLLYT-----FSLATLMPYTRLTQLNLDRAELTK-LQ-----VDGTLPVLG   80 (266)
T ss_dssp             EEECTTSC--CSSCCSCCCTTCCEEECTTSCCSE-----EEGGGGTTCTTCCEEECTTSCCCE-EE-----CCSCCTTCC
T ss_pred             EEEccCCC--CCeeCcCcCcCCCEEECcCCcCCC-----cCHHHhhccccccccccccccccc-cc-----ccccccccc
Confidence            36776522  2222  23 357888888888875     556677778888888888888775 33     345667777


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCc-----------------------cchhhccCCCCCCEEeCcCCc
Q 045715          132 MLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGS-----------------------RTKQGLAKLKNLEALDLSSNY  188 (199)
Q Consensus       132 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------------ip~~~~~~l~~L~~L~Ls~N~  188 (199)
                      +|+|++|+++. .+..+..+++|+.|++++|.+...                       +|...+..+++|+.|++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            77777777763 344555555666666655554441                       333344555566666666666


Q ss_pred             cC
Q 045715          189 YI  190 (199)
Q Consensus       189 l~  190 (199)
                      |+
T Consensus       160 l~  161 (266)
T d1p9ag_         160 LT  161 (266)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-15  Score=109.84  Aligned_cols=110  Identities=23%  Similarity=0.178  Sum_probs=90.8

Q ss_pred             EecCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh
Q 045715           68 LSLNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY  147 (199)
Q Consensus        68 l~l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  147 (199)
                      .+...+++|+|++|.++.     + +..+..+++|+.|+|++|.++. ++     .|..+++|++|++++|+++...+..
T Consensus        15 ~n~~~lr~L~L~~n~I~~-----i-~~~~~~l~~L~~L~Ls~N~i~~-l~-----~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-----I-ENLGATLDQFDAIDFSDNEIRK-LD-----GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-----C-CCGGGGTTCCSEEECCSSCCCE-EC-----CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             cCcCcCcEEECCCCCCCc-----c-CccccccccCCEEECCCCCCCc-cC-----CcccCcchhhhhcccccccCCCccc
Confidence            345567889999999876     4 3455678999999999999997 44     6888999999999999998655556


Q ss_pred             hcCCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccC
Q 045715          148 LNTLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       148 ~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +..+++|+.|++++|+++. ++. ..+..+++|++|++++|+++
T Consensus        83 ~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            7789999999999999987 543 36788999999999999997

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.5e-15  Score=115.42  Aligned_cols=107  Identities=25%  Similarity=0.265  Sum_probs=85.0

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCC
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTS  153 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  153 (199)
                      +.++++.|.++.     +++..|..+++|+.|++++|.++...+.    .|.++++|+++++++|++++..|..|..+++
T Consensus       132 ~~l~l~~N~l~~-----i~~~~f~~~~~L~~L~l~~N~l~~l~~~----~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         132 QYLYLQDNALQA-----LPDDTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             CEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             chhhhccccccc-----cChhHhccccchhhcccccCcccccchh----hhccccccchhhhhhccccccChhHhhhhhh
Confidence            456666666654     5566677788888888888888886666    7888888888888888888777888888888


Q ss_pred             CCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          154 LTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       154 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      |++|++++|++.+ ++...|..+++|+.|++++|+++
T Consensus       203 L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         203 LMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccccccccc-ccccccccccccCEEEecCCCCC
Confidence            8888888888888 55557888888888888888876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-14  Score=112.89  Aligned_cols=111  Identities=23%  Similarity=0.206  Sum_probs=94.4

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      +++++|+++.|.+..     +....+...++|+.+++++|.++++.+.    .|..+++|+.|++++|++++..+..|.+
T Consensus       105 ~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~l~l~~N~l~~i~~~----~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         105 GRLHTLHLDRCGLQE-----LGPGLFRGLAALQYLYLQDNALQALPDD----TFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccCCEEecCCccccc-----ccccccchhcccchhhhccccccccChh----HhccccchhhcccccCcccccchhhhcc
Confidence            456788888888765     4466777888999999999999986666    7888999999999999999877888999


Q ss_pred             CCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +++|+.+++++|++++..| ..|.++++|++|++++|++++
T Consensus       176 l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccchhhhhhccccccCh-hHhhhhhhccccccccccccc
Confidence            9999999999999998444 489999999999999999983

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=4.3e-15  Score=117.44  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=85.8

Q ss_pred             ccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhh
Q 045715           93 MSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQG  172 (199)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~  172 (199)
                      +..+..++.++.+++++|.+++.+|     .+..+++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|.  
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--  286 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--  286 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--
T ss_pred             ccccccccccccccccccccccccc-----ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--
Confidence            5566788999999999999998654     788899999999999999999999999999999999999999988884  


Q ss_pred             ccCCCCCCEEeCcCCc-cCCCCcCC
Q 045715          173 LAKLKNLEALDLSSNY-YIHGSLEG  196 (199)
Q Consensus       173 ~~~l~~L~~L~Ls~N~-l~~~~ip~  196 (199)
                      ++++++|+.+++++|+ +.|.++|.
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             cccCCCCCHHHhCCCccccCCCCCC
Confidence            6889999999999997 67667885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=4.6e-14  Score=110.95  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=88.8

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcC
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNT  150 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  150 (199)
                      ++++.|++++|....     ..+..|..++.+++|++++|.+++..+.    .+..+++|++|+|++|+++ .+|..|..
T Consensus       171 ~~L~~L~l~~n~~~~-----~~~~~~~~~~~l~~L~~s~n~l~~~~~~----~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         171 PSLTELHLDGNKITK-----VDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             TTCSEEECTTSCCCE-----ECTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             CccCEEECCCCcCCC-----CChhHhhccccccccccccccccccccc----cccccccceeeeccccccc-cccccccc
Confidence            345667777766654     3456677888888888888888887676    7888888999999998888 56778888


Q ss_pred             CCCCCEEecCCCcCCCccchhhc------cCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          151 LTSLTTLNLRYNSIEGSRTKQGL------AKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       151 l~~L~~L~Ls~N~l~~~ip~~~~------~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      +++|++|+|++|+|+. ++...|      ..+.+|+.|++++|+++...++...|
T Consensus       241 l~~L~~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         241 HKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             CSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             ccCCCEEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            8889999998888887 654333      35678888899988887555654443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=98.43  Aligned_cols=88  Identities=19%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             cCCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           96 FHPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      +..+++|++|++++| .++.+.+.    .|.++++|+.|++++|+++...+..|..+++|++|+|++|+|+. +|...+.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~  101 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             ccCccccCeeecCCCccccccCch----hhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChhhhc
Confidence            344555556666443 35554344    55556666666666666655445555556666666666666654 5543333


Q ss_pred             CCCCCCEEeCcCCcc
Q 045715          175 KLKNLEALDLSSNYY  189 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l  189 (199)
                      . .+|+.|+|++|++
T Consensus       102 ~-~~l~~L~L~~Np~  115 (156)
T d2ifga3         102 G-LSLQELVLSGNPL  115 (156)
T ss_dssp             S-CCCCEEECCSSCC
T ss_pred             c-ccccccccCCCcc
Confidence            2 2456666666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.7e-13  Score=94.35  Aligned_cols=80  Identities=26%  Similarity=0.318  Sum_probs=72.0

Q ss_pred             cEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEE
Q 045715          103 QRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEAL  182 (199)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L  182 (199)
                      ++|+|++|.++. ++     .+..+++|++|++++|+++ .+|..++.+++|++|++++|.|+. +|  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~-l~-----~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-----HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSS-CC-----CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEE
T ss_pred             CEEEcCCCCCCC-Cc-----ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC--ccccccccCeE
Confidence            579999999996 44     6889999999999999998 577789999999999999999998 76  48999999999


Q ss_pred             eCcCCccCCC
Q 045715          183 DLSSNYYIHG  192 (199)
Q Consensus       183 ~Ls~N~l~~~  192 (199)
                      ++++|+|++.
T Consensus        71 ~l~~N~i~~~   80 (124)
T d1dcea3          71 LLCNNRLQQS   80 (124)
T ss_dssp             ECCSSCCCSS
T ss_pred             ECCCCccCCC
Confidence            9999999844

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=2.3e-13  Score=106.82  Aligned_cols=112  Identities=21%  Similarity=0.165  Sum_probs=93.8

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      .++.++++.|.+..     ++.   ..+++|+.|++++|.++...+.    .|..++.+++|++++|.+++..+..+.++
T Consensus       151 ~L~~l~l~~n~l~~-----l~~---~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         151 KLSYIRIADTNITT-----IPQ---GLPPSLTELHLDGNKITKVDAA----SLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             TCCEEECCSSCCCS-----CCS---SCCTTCSEEECTTSCCCEECTG----GGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccCccccccCCccc-----cCc---ccCCccCEEECCCCcCCCCChh----Hhhcccccccccccccccccccccccccc
Confidence            34566777776654     222   2367899999999999988777    89999999999999999998888889999


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      ++|++|+|++|+|+. +|. .+..+++|+.|+|++|+|+  .++...|
T Consensus       219 ~~L~~L~L~~N~L~~-lp~-~l~~l~~L~~L~Ls~N~i~--~i~~~~f  262 (305)
T d1xkua_         219 PHLRELHLNNNKLVK-VPG-GLADHKYIQVVYLHNNNIS--AIGSNDF  262 (305)
T ss_dssp             TTCCEEECCSSCCSS-CCT-TTTTCSSCCEEECCSSCCC--CCCTTSS
T ss_pred             ccceeeecccccccc-ccc-ccccccCCCEEECCCCccC--ccChhhc
Confidence            999999999999997 887 8999999999999999999  5555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=99.51  Aligned_cols=90  Identities=21%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ..|.+..++++|+|++|+|+. ++.    .+..+++|+.|+|++|+++. + +.|..+++|++|++++|+++. ++...+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~-i~~----~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~-l~~~~~   83 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPV-IEN----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLD   83 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred             HhccCcCcCcEEECCCCCCCc-cCc----cccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC-CCcccc
Confidence            346678899999999999998 466    67789999999999999984 3 358899999999999999998 776457


Q ss_pred             cCCCCCCEEeCcCCccCC
Q 045715          174 AKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       174 ~~l~~L~~L~Ls~N~l~~  191 (199)
                      ..+++|++|++++|+|+.
T Consensus        84 ~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          84 QALPDLTELILTNNSLVE  101 (162)
T ss_dssp             HHCTTCCEEECCSCCCCC
T ss_pred             ccccccccceeccccccc
Confidence            789999999999999983

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=6.5e-12  Score=92.88  Aligned_cols=85  Identities=36%  Similarity=0.446  Sum_probs=62.8

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..++.|+.|++++|.+... +     .+..+++|+.|++++|++.. + +.+..+++|+.|++++|++++ ++  .+.+
T Consensus       102 l~~l~~L~~L~l~~~~~~~~-~-----~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~--~l~~  170 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDI-D-----PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK--PLAN  170 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-G-----GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG--GGTT
T ss_pred             cccccccccccccccccccc-c-----ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc--cccC
Confidence            34444555555555444431 1     56778888999999888873 3 357888999999999999988 65  4889


Q ss_pred             CCCCCEEeCcCCccCC
Q 045715          176 LKNLEALDLSSNYYIH  191 (199)
Q Consensus       176 l~~L~~L~Ls~N~l~~  191 (199)
                      +++|+.|++++|++++
T Consensus       171 l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         171 LTTLERLDISSNKVSD  186 (199)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            9999999999999984

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4e-12  Score=90.77  Aligned_cols=92  Identities=17%  Similarity=0.076  Sum_probs=78.8

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCC-CCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKN  178 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  178 (199)
                      ...+.++.+++.+.. .|.    .+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+. +++..|..+++
T Consensus         8 ~~~~~l~c~~~~~~~-~p~----~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~   81 (156)
T d2ifga3           8 HGSSGLRCTRDGALD-SLH----HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPR   81 (156)
T ss_dssp             SSSSCEECCSSCCCT-TTT----TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSC
T ss_pred             CCCCeEEecCCCCcc-Ccc----cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCC-ccccccccccc
Confidence            345668888888887 566    8888999999999766 5887667789999999999999999998 77668999999


Q ss_pred             CCEEeCcCCccCCCCcCCCCC
Q 045715          179 LEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       179 L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      |++|+|++|+|+  .+|...|
T Consensus        82 L~~L~Ls~N~l~--~l~~~~~  100 (156)
T d2ifga3          82 LSRLNLSFNALE--SLSWKTV  100 (156)
T ss_dssp             CCEEECCSSCCS--CCCSTTT
T ss_pred             ccceeccCCCCc--ccChhhh
Confidence            999999999999  6776655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=8.6e-12  Score=93.04  Aligned_cols=64  Identities=41%  Similarity=0.464  Sum_probs=47.0

Q ss_pred             hccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          123 SFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       123 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+..++.++.+++++|.++.  +..+..+++|+++++++|++++ ++  .+.++++|+.|++++|+|++
T Consensus       129 ~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         129 GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccc-cc--cccCCCCCCEEECCCCCCCC
Confidence            34555566666666666653  3345678889999999999887 65  37889999999999999983

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=3.4e-14  Score=105.67  Aligned_cols=106  Identities=25%  Similarity=0.261  Sum_probs=88.6

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      +.+++.|+|++|.+..     +  +.+..+++|++|++++|.++. +|.    .+..+++|++|++++|+++. + +.+.
T Consensus        47 L~~L~~L~Ls~n~I~~-----i--~~l~~l~~L~~L~Ls~N~i~~-i~~----~~~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-----I--SSLSGMENLRILSLGRNLIKK-IEN----LDAVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             TTTCCEEECSEEEESC-----C--CCHHHHTTCCEEECCEEEECS-CSS----HHHHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             ccccceeECcccCCCC-----c--ccccCCccccChhhccccccc-ccc----cccccccccccccccccccc-c-cccc
Confidence            6788999999999875     3  347789999999999999987 555    55566789999999999984 3 4578


Q ss_pred             CCCCCCEEecCCCcCCCccch-hhccCCCCCCEEeCcCCccC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTK-QGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      .+++|+.|++++|+++. ++. ..+..+++|+.|++++|+++
T Consensus       113 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccchhcc-ccccccccCCCccceeecCCCccc
Confidence            88999999999999987 542 36889999999999999886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=1.7e-11  Score=90.54  Aligned_cols=104  Identities=29%  Similarity=0.351  Sum_probs=86.7

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ++++++|++++|.++.     +  ..+..+++|++|++++|.+.. ++     .+..++.|+.|++++|.+...  ..+.
T Consensus        61 l~nL~~L~Ls~N~l~~-----~--~~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~~~~~~~--~~~~  125 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD-----I--TPLKNLTKLVDILMNNNQIAD-IT-----PLANLTNLTGLTLFNNQITDI--DPLK  125 (199)
T ss_dssp             CTTCCEEECCSSCCCC-----C--GGGTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECCSSCCCCC--GGGT
T ss_pred             CCCcCcCccccccccC-----c--ccccCCccccccccccccccc-cc-----ccccccccccccccccccccc--cccc
Confidence            5678899999998865     2  237889999999999998876 43     578899999999999998743  3478


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+++|+.|++++|++.. ++  .+..+++|+.|++++|++++
T Consensus       126 ~l~~L~~L~l~~n~l~~-~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         126 NLTNLNRLELSSNTISD-IS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             TCTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCC
T ss_pred             hhhhhHHhhhhhhhhcc-cc--cccccccccccccccccccC
Confidence            89999999999999987 55  48889999999999999984

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=2.2e-11  Score=90.70  Aligned_cols=104  Identities=29%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             cCCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhc
Q 045715           70 LNYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLN  149 (199)
Q Consensus        70 l~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  149 (199)
                      ++++++|++++|.++.     +  ..+..+++|++|++++|++++ +|     .+..+++|+.|++++|.+..  ...+.
T Consensus        67 l~~L~~L~L~~n~i~~-----l--~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~l~~~~~~~--~~~l~  131 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-----I--KPLANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD--INGLV  131 (210)
T ss_dssp             CTTCCEEECCSSCCCC-----C--GGGTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC--CGGGG
T ss_pred             CCCCCEEeCCCccccC-----c--cccccCccccccccccccccc-cc-----cccccccccccccccccccc--ccccc
Confidence            6678889999998865     2  235788999999999999987 44     67889999999999999873  34578


Q ss_pred             CCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          150 TLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       150 ~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .++.++.++++.|.+++ .+  .+..+++|+.+++++|++++
T Consensus       132 ~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         132 HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccccccc-cc--cccccccccccccccccccc
Confidence            88999999999999987 43  47789999999999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=1.4e-11  Score=98.74  Aligned_cols=81  Identities=30%  Similarity=0.381  Sum_probs=43.9

Q ss_pred             cCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccC
Q 045715           96 FHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAK  175 (199)
Q Consensus        96 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  175 (199)
                      +..++.++.|++++|++++. +     .+..+++|++|++++|++++ ++ .++++++|++|++++|++++ +++  +.+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-----~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~-l~~--l~~  371 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-----PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD-LTP--LAN  371 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-----GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB-CGG--GTT
T ss_pred             cchhcccCeEECCCCCCCCC-c-----ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC-Chh--hcc
Confidence            34445555555555555552 2     34455556666666665552 22 35555666666666666655 432  555


Q ss_pred             CCCCCEEeCcCC
Q 045715          176 LKNLEALDLSSN  187 (199)
Q Consensus       176 l~~L~~L~Ls~N  187 (199)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            556666666555

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.8e-12  Score=95.85  Aligned_cols=106  Identities=16%  Similarity=0.292  Sum_probs=79.6

Q ss_pred             CCCCCceEecCCCCCeEEE--ec-CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccC
Q 045715           50 CDDWVGVKCSATTRRVMQL--SL-NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGS  126 (199)
Q Consensus        50 c~~w~gv~C~~~~~~v~~l--~l-~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  126 (199)
                      | ....|.|.+..  ++++  .+ .++++|++++|.+..     ++...|.++++|++|++++|.+...++..   .|..
T Consensus         8 C-~~~~i~c~~~~--l~~iP~~l~~~l~~L~Ls~n~i~~-----l~~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~   76 (242)
T d1xwdc1           8 C-SNRVFLCQESK--VTEIPSDLPRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEAD---VFSN   76 (242)
T ss_dssp             E-CSSEEEEESCS--CSSCCSCSCSCCSEEEEESCCCCE-----ECTTTTTTCTTCCEEEEESCTTCCEECSS---SEES
T ss_pred             C-cCCEEEEeCCC--CCCcCCCCCCCCCEEECcCCcCCc-----cChhHhhccchhhhhhhccccccceeecc---cccc
Confidence            5 77889997532  2222  22 478999999999976     66778899999999999999988755431   5777


Q ss_pred             CCCCCEEEcC-CCCCCCCChhhhcCCCCCCEEecCCCcCCC
Q 045715          127 LRQLKMLNLG-NNDFNDNILPYLNTLTSLTTLNLRYNSIEG  166 (199)
Q Consensus       127 l~~L~~L~Ls-~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  166 (199)
                      ++.++++.+. .|.+....+..|.++++|+++++++|.+..
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhcc
Confidence            8888888765 466766666777888888888888887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=7.3e-11  Score=94.36  Aligned_cols=110  Identities=22%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             CCccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcccccc----------------chhhccCCCCCCEEE
Q 045715           71 NYTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR----------------AYDSFGSLRQLKMLN  134 (199)
Q Consensus        71 ~~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----------------~~~~~~~l~~L~~L~  134 (199)
                      ..++.+++++|.+..       ...+..+++|++|++++|.+++..+-.                ....+..+++++.|+
T Consensus       241 ~~L~~L~l~~n~l~~-------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~  313 (384)
T d2omza2         241 TNLTDLDLANNQISN-------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  313 (384)
T ss_dssp             TTCSEEECCSSCCCC-------CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             cccchhccccCccCC-------CCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEE
Confidence            445778888887764       223566777777777777776532210                012467788999999


Q ss_pred             cCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCCC
Q 045715          135 LGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHG  192 (199)
Q Consensus       135 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~  192 (199)
                      +++|++++..  .+..+++|++|++++|++++ ++  .+.++++|++|++++|+|++.
T Consensus       314 ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~--~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         314 LYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS--SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch--hHcCCCCCCEEECCCCcCCCC
Confidence            9999998643  37889999999999999998 65  589999999999999999943

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=2.1e-10  Score=86.01  Aligned_cols=107  Identities=27%  Similarity=0.319  Sum_probs=74.0

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCcccccc----------------chhhccCCCCCCEEEcC
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR----------------AYDSFGSLRQLKMLNLG  136 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----------------~~~~~~~l~~L~~L~Ls  136 (199)
                      ++.+++++|.++.       ...+..++.|+.++++++...+..+-.                ....+..+++|+.|+++
T Consensus        87 l~~l~~~~n~~~~-------i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  159 (227)
T d1h6ua2          87 ITELELSGNPLKN-------VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG  159 (227)
T ss_dssp             CCEEECCSCCCSC-------CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccc-------cccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccc
Confidence            3556666666543       223556666777777666655432210                01245677889999999


Q ss_pred             CCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          137 NNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       137 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      +|+++..  ..++++++|+.|+|++|++++ ++  .+.++++|++|+|++|++++
T Consensus       160 ~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~--~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         160 NAQVSDL--TPLANLSKLTTLKADDNKISD-IS--PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             SSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECTTSCCCB
T ss_pred             ccccccc--hhhcccccceecccCCCccCC-Ch--hhcCCCCCCEEECcCCcCCC
Confidence            9988743  337888999999999999887 65  37888999999999999884

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.14  E-value=1.4e-10  Score=86.98  Aligned_cols=81  Identities=25%  Similarity=0.349  Sum_probs=69.7

Q ss_pred             ccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           95 LFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      .+...++|+.|++++|.+.+. +     .+..+++|++|++++|++++ ++ .+.++++|++|+|++|++++ +++  +.
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~-~-----~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~--l~  214 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDL-T-----PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP--LA  214 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-G-----GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG--GT
T ss_pred             hhccccccccccccccccccc-h-----hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc--cc
Confidence            356778899999999998863 2     67889999999999999985 43 38899999999999999998 764  88


Q ss_pred             CCCCCCEEeCcC
Q 045715          175 KLKNLEALDLSS  186 (199)
Q Consensus       175 ~l~~L~~L~Ls~  186 (199)
                      ++++|+.|++++
T Consensus       215 ~l~~L~~L~lsn  226 (227)
T d1h6ua2         215 NTSNLFIVTLTN  226 (227)
T ss_dssp             TCTTCCEEEEEE
T ss_pred             cCCCCCEEEeeC
Confidence            999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.02  E-value=2.2e-12  Score=95.65  Aligned_cols=88  Identities=26%  Similarity=0.377  Sum_probs=75.7

Q ss_pred             cccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhc
Q 045715           94 SLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGL  173 (199)
Q Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  173 (199)
                      ..+..+++|++|+|++|.|+. ++     .+..+++|++|+|++|+++ .++..+..+++|+.|++++|+++. ++  .+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-----~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~--~~  111 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GI  111 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-----CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH--HH
T ss_pred             hHHhcccccceeECcccCCCC-cc-----cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc--cc
Confidence            457789999999999999997 44     6888999999999999998 456655666789999999999997 64  47


Q ss_pred             cCCCCCCEEeCcCCccCC
Q 045715          174 AKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       174 ~~l~~L~~L~Ls~N~l~~  191 (199)
                      ..+++|+.|++++|+|++
T Consensus       112 ~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHHSSEEEESEEECCC
T ss_pred             cccccccccccccchhcc
Confidence            889999999999999983

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.3e-09  Score=82.09  Aligned_cols=67  Identities=19%  Similarity=0.075  Sum_probs=44.0

Q ss_pred             CCCEEEcCCCCCCCCChhhhcCCCCCCEE-ecCCCcCCCccchhhccCCCCCCEEeCcCCccCCCCcCCCCC
Q 045715          129 QLKMLNLGNNDFNDNILPYLNTLTSLTTL-NLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIHGSLEGNFF  199 (199)
Q Consensus       129 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~~~ip~~~f  199 (199)
                      .++.|++++|+++...+..+ ..++++.+ ++++|+++. +|...|.++++|+.|++++|+|+  .+|...|
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~-l~~~~f~~l~~L~~L~Ls~N~l~--~l~~~~~  221 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIH--SLPSYGL  221 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCC-CCTTTTTTSCCCSEEECTTSCCC--CCCSSSC
T ss_pred             cceeeecccccccccccccc-cchhhhcccccccccccc-ccHHHhcCCCCCCEEECCCCcCC--ccCHHHH
Confidence            56777888887774333333 34444444 567777776 77656778888888888888887  5555433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=9.8e-09  Score=80.46  Aligned_cols=95  Identities=20%  Similarity=0.173  Sum_probs=72.7

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCC
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTL  151 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  151 (199)
                      +++.|+|++|.++.     + |+   -+++|++|++++|+|+. +|.    .   +.+|+.|++++|+++. ++. +  .
T Consensus        39 ~l~~LdLs~~~L~~-----l-p~---~~~~L~~L~Ls~N~l~~-lp~----~---~~~L~~L~l~~n~l~~-l~~-l--p   97 (353)
T d1jl5a_          39 QAHELELNNLGLSS-----L-PE---LPPHLESLVASCNSLTE-LPE----L---PQSLKSLLVDNNNLKA-LSD-L--P   97 (353)
T ss_dssp             TCSEEECTTSCCSC-----C-CS---CCTTCSEEECCSSCCSS-CCC----C---CTTCCEEECCSSCCSC-CCS-C--C
T ss_pred             CCCEEEeCCCCCCC-----C-CC---CCCCCCEEECCCCCCcc-ccc----c---hhhhhhhhhhhcccch-hhh-h--c
Confidence            45667777777754     3 22   25789999999999996 675    4   4578999999999873 332 1  1


Q ss_pred             CCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccC
Q 045715          152 TSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       152 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +.|++|++++|.++. +|.  ++.+++|++|++++|.++
T Consensus        98 ~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccc-ccc--hhhhccceeecccccccc
Confidence            469999999999987 774  678999999999999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.5e-10  Score=91.14  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             ccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCC----hhhh
Q 045715           73 TTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNI----LPYL  148 (199)
Q Consensus        73 ~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~  148 (199)
                      ++.||+++|+++..++.    ..+..+++++.|+|++|.++..........+..+++|++|+|++|+++...    ...+
T Consensus         4 l~~ld~~~~~i~~~~~~----~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWA----ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEESCCCCHHHHH----HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCEEEeeCCcCChHHHH----HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            46788999999875542    334557889999999999874321111115678899999999999986321    1222


Q ss_pred             c-CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          149 N-TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~-~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      . ...+|++|+|++|.++..    ++. .+..+++|+.|++++|.++
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccch
Confidence            2 235799999999998762    232 5778899999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=3.8e-09  Score=83.72  Aligned_cols=118  Identities=25%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             CccceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhh----
Q 045715           72 YTTKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPY----  147 (199)
Q Consensus        72 ~~~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----  147 (199)
                      .++.|++++|.+...+...+....+...++|+.|++++|.++..........+...++|++|+|++|.+++.-...    
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            3467888888877654432334456678889999999998765321111125677889999999999987543332    


Q ss_pred             hcC--CCCCCEEecCCCcCCCc----cchhhc-cCCCCCCEEeCcCCccC
Q 045715          148 LNT--LTSLTTLNLRYNSIEGS----RTKQGL-AKLKNLEALDLSSNYYI  190 (199)
Q Consensus       148 ~~~--l~~L~~L~Ls~N~l~~~----ip~~~~-~~l~~L~~L~Ls~N~l~  190 (199)
                      +..  .+.|++|++++|.++..    +.. .+ .++++|++|+|++|++.
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSC
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHH-HHHccCCCCCEEECCCCcCC
Confidence            322  36799999999988752    222 23 25788999999999986

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.5e-09  Score=73.70  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             ccCCCCCCcEEECCCCccCccc--cccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccch--
Q 045715           95 LFHPFEELQRLDLPMNWFTGIY--ENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTK--  170 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~--  170 (199)
                      .+..++.|++|+|++|+++...  +.    .+..+++|+.|+|++|+++...+-.+.....|+.|++++|++......  
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~----~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGT----HHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHH----HHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3456889999999999999743  33    567899999999999999854333444556799999999999874331  


Q ss_pred             ----hhccCCCCCCEEeCcCCcc
Q 045715          171 ----QGLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       171 ----~~~~~l~~L~~L~Ls~N~l  189 (199)
                          ..+..+|+|+.||  ++.+
T Consensus       136 ~y~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         136 TYISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHHHTTSTTCCEET--TEEC
T ss_pred             hHHHHHHHHCCCCCEEC--cCCC
Confidence                1367799999886  4444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.8e-09  Score=77.05  Aligned_cols=68  Identities=25%  Similarity=0.185  Sum_probs=55.4

Q ss_pred             hccCCCCCCEEEcCCCCCCCCC--hhhhcCCCCCCEEecCCCcCCCccchhhccCCCCCCEEeCcCCccCC
Q 045715          123 SFGSLRQLKMLNLGNNDFNDNI--LPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNLEALDLSSNYYIH  191 (199)
Q Consensus       123 ~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~Ls~N~l~~  191 (199)
                      .+..++.|++|+|++|+++..-  +..+..+++|+.|+|++|.|+. ++.-.+.....|+.|++++|+++.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCc
Confidence            4567899999999999998543  3457789999999999999998 554344455679999999999973

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.9e-08  Score=81.26  Aligned_cols=116  Identities=24%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCC----Chhhhc
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLN  149 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~  149 (199)
                      +.+++++|.+...+...+..........|+.+++++|.++..........+...++|++|+|++|+++..    ++..+.
T Consensus       286 ~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  365 (460)
T d1z7xw1         286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG  365 (460)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             cccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh
Confidence            4455555555432221111111122345666666666655432110001223345566666666666422    122222


Q ss_pred             -CCCCCCEEecCCCcCCCc----cchhhccCCCCCCEEeCcCCccC
Q 045715          150 -TLTSLTTLNLRYNSIEGS----RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       150 -~l~~L~~L~Ls~N~l~~~----ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                       ..+.|++|+|++|.|+..    ++. .+..+++|++|+|++|+|+
T Consensus       366 ~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         366 QPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSSCC
T ss_pred             cccCCCCEEECCCCCCChHHHHHHHH-HHhcCCCCCEEECCCCcCC
Confidence             344566666666666531    222 3445566666666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.46  E-value=5.6e-08  Score=76.73  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             cceeccCCCccccccccccccccCCCCCCcEEECCCCccCcccccc-chhhccCCCCCCEEEcCCCCCCCC----Chhhh
Q 045715           74 TKFNYSYNSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENR-AYDSFGSLRQLKMLNLGNNDFNDN----ILPYL  148 (199)
Q Consensus        74 ~~L~ls~N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~  148 (199)
                      +.++++.|.+...+...+ ...+...+.|+.|++++|.++...... ....+..+++|+.|+|++|.++..    +...+
T Consensus       161 ~~l~l~~n~i~~~~~~~l-~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         161 RSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             CEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             ceeecccccccccccccc-cchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc
Confidence            455666666654333212 223455678999999999887521000 011467788899999999998532    23456


Q ss_pred             cCCCCCCEEecCCCcCCCccch---hhcc--CCCCCCEEeCcCCccC
Q 045715          149 NTLTSLTTLNLRYNSIEGSRTK---QGLA--KLKNLEALDLSSNYYI  190 (199)
Q Consensus       149 ~~l~~L~~L~Ls~N~l~~~ip~---~~~~--~l~~L~~L~Ls~N~l~  190 (199)
                      ..+++|++|+|++|.+++.-..   ..+.  ..+.|++|++++|+|+
T Consensus       240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            7888999999999998762111   0222  2467999999999886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.45  E-value=5.2e-07  Score=70.26  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=63.2

Q ss_pred             CCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCChhhhcCCCCCCEEecCCCcCCCccchhhccCCCCC
Q 045715          100 EELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLAKLKNL  179 (199)
Q Consensus       100 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L  179 (199)
                      .++++|||++|.++. +|+    .   +++|++|++++|+++ .+|..   +.+|+.|++++|.++. ++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~-lp~----~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE----L---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS----C---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCC-CCC----C---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh--h--cccc
Confidence            368899999999987 675    3   468999999999999 56754   4579999999999987 653  2  2469


Q ss_pred             CEEeCcCCccCCCCcCC
Q 045715          180 EALDLSSNYYIHGSLEG  196 (199)
Q Consensus       180 ~~L~Ls~N~l~~~~ip~  196 (199)
                      ++|++++|.++  .+|.
T Consensus       101 ~~L~L~~n~l~--~lp~  115 (353)
T d1jl5a_         101 EYLGVSNNQLE--KLPE  115 (353)
T ss_dssp             CEEECCSSCCS--SCCC
T ss_pred             ccccccccccc--cccc
Confidence            99999999998  5554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3e-07  Score=70.88  Aligned_cols=62  Identities=18%  Similarity=0.195  Sum_probs=42.1

Q ss_pred             cCCCCCCEEEcCCC-CCCCCChhhhcCCCCCCEEecCCC-cCCCccchhhccCCCCCCEEeCcCC
Q 045715          125 GSLRQLKMLNLGNN-DFNDNILPYLNTLTSLTTLNLRYN-SIEGSRTKQGLAKLKNLEALDLSSN  187 (199)
Q Consensus       125 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~ip~~~~~~l~~L~~L~Ls~N  187 (199)
                      ..+++|++|++++| .+++.....+.++++|++|+|+++ .+++.... .++++++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            45677888888775 456556666777778888888773 56553333 5667778888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9.8e-07  Score=67.88  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             CCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCC-CCCCCChhhhcCCCCCCEEecCCCcCCCccchhhcc
Q 045715           97 HPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNN-DFNDNILPYLNTLTSLTTLNLRYNSIEGSRTKQGLA  174 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  174 (199)
                      ..+++|++|++++| .+++....    .+..+++|++|+++++ .+++.....++++++|+.|+++++--.+.++. ...
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~----~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~-l~~  246 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL-LKE  246 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHH-HHH
T ss_pred             cccccccccccccccCCCchhhh----hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHH-HHH
Confidence            45789999999986 47765555    8889999999999995 67766667788999999999998732222322 234


Q ss_pred             CCCCCCEEeCcCCccCCCCcC
Q 045715          175 KLKNLEALDLSSNYYIHGSLE  195 (199)
Q Consensus       175 ~l~~L~~L~Ls~N~l~~~~ip  195 (199)
                      .+++|+   +..+++++...|
T Consensus       247 ~lp~L~---i~~~~ls~~~~~  264 (284)
T d2astb2         247 ALPHLQ---INCSHFTTIARP  264 (284)
T ss_dssp             HSTTSE---ESCCCSCCTTCS
T ss_pred             hCcccc---ccCccCCCCCCC
Confidence            566655   567777754434

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.20  E-value=5.3e-07  Score=64.09  Aligned_cols=117  Identities=11%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             CCccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh----
Q 045715           71 NYTTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL----  145 (199)
Q Consensus        71 ~~~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----  145 (199)
                      +.++.|+|++ +.+...+...+ ...+...+.|++|+|++|.+...........+...+.|++|+|++|.++..-.    
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            3456666665 34554443222 33456778899999999998753322111245667889999999999974322    


Q ss_pred             hhhcCCCCCCEEecCCCcCCCccc-------hhhccCCCCCCEEeCcCCcc
Q 045715          146 PYLNTLTSLTTLNLRYNSIEGSRT-------KQGLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       146 ~~~~~l~~L~~L~Ls~N~l~~~ip-------~~~~~~l~~L~~L~Ls~N~l  189 (199)
                      ..+...++|++|++++|.+.. +.       ...+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~-~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSV-LGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCC-CCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCC-ccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            245667889999999987654 21       11355678999999877643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=2.8e-06  Score=60.16  Aligned_cols=93  Identities=11%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             CCCCCCcEEECCCC-ccCccccccchhhccCCCCCCEEEcCCCCCCCC----ChhhhcCCCCCCEEecCCCcCCCc----
Q 045715           97 HPFEELQRLDLPMN-WFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDN----ILPYLNTLTSLTTLNLRYNSIEGS----  167 (199)
Q Consensus        97 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----  167 (199)
                      .+.++|+.|+|+++ .++...-......+...+.|++|+|++|.++..    +...+...+.|+.|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45689999999974 565431111223677788999999999999632    223455678999999999999862    


Q ss_pred             cchhhccCCCCCCEEeCcCCccC
Q 045715          168 RTKQGLAKLKNLEALDLSSNYYI  190 (199)
Q Consensus       168 ip~~~~~~l~~L~~L~Ls~N~l~  190 (199)
                      +-. .+...++|++|++++|.+.
T Consensus        92 l~~-aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLR-STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHH-HTTTTCCCSEEECCCCSSC
T ss_pred             HHH-HHHhCCcCCEEECCCCcCC
Confidence            122 4677889999999999776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.79  E-value=3.8e-06  Score=59.27  Aligned_cols=116  Identities=12%  Similarity=0.034  Sum_probs=75.5

Q ss_pred             CccceeccC-CCccccccccccccccCCCCCCcEEECCCCccCccccccchhhccCCCCCCEEEcCCCCCCCCCh----h
Q 045715           72 YTTKFNYSY-NSVYWEGVLVLNMSLFHPFEELQRLDLPMNWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL----P  146 (199)
Q Consensus        72 ~~~~L~ls~-N~~~~~~~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~  146 (199)
                      .++.|++++ +.++..+...+ ...+...++|++|++++|.++..........+...++++.+++++|.++....    .
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCcEEEcCCCCCCCHHHHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            445555554 44554443222 33456788999999999998764322122356677899999999999864322    3


Q ss_pred             hhcCCCCCCEEec--CCCcCCC----ccchhhccCCCCCCEEeCcCCcc
Q 045715          147 YLNTLTSLTTLNL--RYNSIEG----SRTKQGLAKLKNLEALDLSSNYY  189 (199)
Q Consensus       147 ~~~~l~~L~~L~L--s~N~l~~----~ip~~~~~~l~~L~~L~Ls~N~l  189 (199)
                      .+...++|+.++|  +.|.+..    .+.. .+...++|+.|+++.+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            4567788987655  5667754    1222 456788999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.22  E-value=0.00011  Score=51.35  Aligned_cols=95  Identities=18%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             ccCCCCCCcEEECCC-CccCccccccchhhccCCCCCCEEEcCCCCCCCCCh----hhhcCCCCCCEEecCCCcCCCc--
Q 045715           95 LFHPFEELQRLDLPM-NWFTGIYENRAYDSFGSLRQLKMLNLGNNDFNDNIL----PYLNTLTSLTTLNLRYNSIEGS--  167 (199)
Q Consensus        95 ~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~--  167 (199)
                      ...+.+.|++|++++ +.++...-......+...++|++|++++|.++....    ..+...++++.++++.|.+...  
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345678999999997 556543221122356788999999999999974322    2345678999999999998752  


Q ss_pred             --cchhhccCCCCCCEEeCc--CCccC
Q 045715          168 --RTKQGLAKLKNLEALDLS--SNYYI  190 (199)
Q Consensus       168 --ip~~~~~~l~~L~~L~Ls--~N~l~  190 (199)
                        +.. .+...++|+.++|+  +|.+.
T Consensus        92 ~~l~~-~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          92 LALVE-ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHH-GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHH-HHHhCccccEEeeccCCCcCc
Confidence              222 46778899976664  56664