Citrus Sinensis ID: 045723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MEGLIKGLVDVALGGGRDRDDREEEQRSRDERSRSSWAEVVSGDQDRDAQERRRHSQHNNQWSVQEESQVWQDEGSRPSRRPQKAVDEGHEKNEGFNWNQNNWNREEKREDNNDGWETVGRKPPRRQHKIQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
cccccHHHHHHHccccccccccHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccEEEcEEEEcccccEEEEEEHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEEEEccEEEEEcEEEEEccHHHHHHHHHHHEEEcccccEEEEccEEEEEEEEEEccEEEEEcccccc
ccccHHcEEEEEccccccccccccccccccccccccHHHEEccccccccHccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHcccccccEEEEEcccccccccccccccccHHccccHHHHccHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEcccccEEEccHHHHHHHHHHHcccccEEEEEEccccccccccccEEEEEEEEEccEEEcccEEEEccccHHHEEEHHHHHcccccccEEEEccEEEEEEEEEcccEEEEEcccccc
MEGLIKGLVDValgggrdrddreeeqrsrdersrsswaevvsgdqdrdaqerrrhsqhnnqwsvQEESQVwqdegsrpsrrpqkavdegheknegfnwnqnnwnreekrednndgwetvgrkpprrqhkiqkeqwngykkppneqeysndvqiddtlepsEEELADLSQGCYRLweldsnrlvpgkdyeidcgdgkkayqkddmaqgslfswlsddvfrkptysrfcslldnynpnaghkevvtSEEKQEQAAFIEEISRTAPIKYLHKYLSAkgivsgnyqdFKRTISSLWFDlygrggtsscssaFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAkgnvdyqgyifprrrgqvpdsetqLLTVQFEWNGILKSVsttlvgvspeFEIALYTLCFFvggednyvqlgpypvnikcyrfgdrigsvfpiaen
meglikglvdvalgggrdrddreeeqrsrdersrsswaevvsgdqdrdaqerrrhsqhnnqwsvqeesqvwqdegsrpsrrpqkavdegheknegfnwnqnnwnreekrednndgwetvgrkpprrqhkiqkeqwngykkppneqeysNDVQIDDTLEPSEEELADLSQGCYRLWeldsnrlvpgkDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
MEGLIKGLVDVALGGGrdrddreeeqrsrdersrssWAEVVSGDQDRDAQERRRHSQHNNQWSVQEESQVWQDEGSRPSRRPQKAVDEGHeknegfnwnqnnwnreekreDNNDGWETVGRKPPRRQHKIQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
**********************************************************************************************************************************************************************LSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNA**************AAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPI***
*EGLIKGLVDVA****************************************************************************************************************************************************EEELADLSQGCYRLWELDSNRLVPGKDYEIDC****************LFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGT*SCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
MEGLIKGLVDVALGGG**************************************************************************EKNEGFNWNQNNWNRE*************************KEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
*EGLIKGLVDVALG********************************************************************************************************************************************DTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDG***YQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAE*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEGLIKGLVDVALGGGRDRDDREEEQRSRDERSRSSWAEVVSGDQDRDAQERRRHSQHNNQWSVQEESQVWQDEGSRPSRRPQKAVDEGHEKNEGFNWNQNNWNREEKREDNNDGWETVGRKPPRRQHKIQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLGPYPVNIKCYRFGDRIGSVFPIAEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
Q503V9282 Poly(U)-specific endoribo no no 0.605 0.929 0.400 1e-49
Q8JFY9292 Poly(U)-specific endoribo N/A no 0.602 0.893 0.398 1e-47
B1WBB4292 Poly(U)-specific endoribo N/A no 0.600 0.890 0.396 7e-47
B1H3D5293 Poly(U)-specific endoribo yes no 0.598 0.883 0.388 2e-46
Q1LUM3309 Poly(U)-specific endoribo no no 0.593 0.831 0.393 5e-44
P21128410 Poly(U)-specific endoribo no no 0.570 0.602 0.372 3e-40
Q3V188412 Poly(U)-specific endoribo yes no 0.480 0.504 0.387 7e-39
A6QLQ8413 Poly(U)-specific endoribo yes no 0.570 0.598 0.365 2e-37
A1L237303 Poly(U)-specific endoribo no no 0.600 0.858 0.364 2e-35
Q21109307 Poly(U)-specific endoribo yes no 0.600 0.846 0.328 1e-33
>sp|Q503V9|ENDUB_DANRE Poly(U)-specific endoribonuclease-B OS=Danio rerio GN=endoub PE=2 SV=1 Back     alignment and function desciption
 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/272 (40%), Positives = 153/272 (56%), Gaps = 10/272 (3%)

Query: 166 DLSQGCYRLWELDSNRLVPGKDYEID----CGDGKKAYQKDDMAQGSLFSWLSDDVFRKP 221
           +LS     LW+ D+NRL PG DY I      GD        D A   LFS++ +++F+K 
Sbjct: 7   ELSALIQELWDNDTNRLRPGIDYRISLQGKAGDLAGVPDDSDGAGMPLFSFVDENIFKKE 66

Query: 222 TYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNY 281
           T+  F SLLDNY  + G  E+VT EE+ E   F++ + +T  +K  HKYL  K +   + 
Sbjct: 67  TFLAFISLLDNYESDTGEPEIVTPEEEMENHRFLDSVIKTPTMKIAHKYLVEKRLSPEDT 126

Query: 282 QDFKRTISSLWFDLYGRGGTSSC-SSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKG 340
             FK+ +  +WF+LY R G+S   SS FEHVFVGE +  G   V GFHNW+Q  L+E  G
Sbjct: 127 TGFKQQLYKIWFELYARKGSSKPDSSGFEHVFVGETR--GGHTVIGFHNWIQLYLQEKLG 184

Query: 341 NVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVG 400
           ++DY+GY       Q PD    +L +QF W   +K   +  +GVSPEFE +LYTLCF + 
Sbjct: 185 HIDYKGYSVNANSPQ-PDENKHMLALQFSWKNGIKPKGSIFIGVSPEFEFSLYTLCFLMS 243

Query: 401 -GEDNYVQLGPYPVNIKCYRFGDR-IGSVFPI 430
             E   V    Y V I C+ +  + IG+ +P+
Sbjct: 244 PNERVKVSFNLYDVEIVCHHYNQKHIGTTYPV 275
Endoribonuclease that cleaves single-stranded RNAs at uridylates and releases products that have 2'-3'-cyclic phosphate termini.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q8JFY9|ENDUA_XENLA Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-a PE=1 SV=1 Back     alignment and function description
>sp|B1WBB4|ENDUB_XENLA Poly(U)-specific endoribonuclease-B OS=Xenopus laevis GN=endou-b PE=2 SV=1 Back     alignment and function description
>sp|B1H3D5|ENDOU_XENTR Poly(U)-specific endoribonuclease OS=Xenopus tropicalis GN=endou PE=2 SV=1 Back     alignment and function description
>sp|Q1LUM3|ENDUC_DANRE Poly(U)-specific endoribonuclease-C OS=Danio rerio GN=endouc PE=2 SV=1 Back     alignment and function description
>sp|P21128|ENDOU_HUMAN Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1 SV=2 Back     alignment and function description
>sp|Q3V188|ENDOU_MOUSE Poly(U)-specific endoribonuclease OS=Mus musculus GN=Endou PE=2 SV=1 Back     alignment and function description
>sp|A6QLQ8|ENDOU_BOVIN Poly(U)-specific endoribonuclease OS=Bos taurus GN=ENDOU PE=2 SV=1 Back     alignment and function description
>sp|A1L237|ENDUA_DANRE Poly(U)-specific endoribonuclease-A OS=Danio rerio GN=endoua PE=2 SV=1 Back     alignment and function description
>sp|Q21109|ENDOU_CAEEL Poly(U)-specific endoribonuclease homolog OS=Caenorhabditis elegans GN=K02A11.3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
225427364444 PREDICTED: poly(U)-specific endoribonucl 0.997 0.972 0.715 0.0
147767385492 hypothetical protein VITISV_032501 [Viti 0.997 0.878 0.645 1e-178
255552942434 Placental protein 11 precursor, putative 0.993 0.990 0.724 1e-175
449459026429 PREDICTED: poly(U)-specific endoribonucl 0.976 0.986 0.681 1e-171
356565397397 PREDICTED: poly(U)-specific endoribonucl 0.916 1.0 0.688 1e-160
297800400447 hypothetical protein ARALYDRAFT_915009 [ 0.983 0.953 0.621 1e-154
238480782434 uncharacterized protein [Arabidopsis tha 0.990 0.988 0.630 1e-152
224126407300 predicted protein [Populus trichocarpa] 0.690 0.996 0.826 1e-148
242073874478 hypothetical protein SORBIDRAFT_06g02405 0.981 0.889 0.588 1e-143
223948879474 unknown [Zea mays] gi|414586034|tpg|DAA3 0.995 0.909 0.586 1e-141
>gi|225427364|ref|XP_002282850.1| PREDICTED: poly(U)-specific endoribonuclease-B [Vitis vinifera] gi|297742189|emb|CBI33976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/443 (71%), Positives = 379/443 (85%), Gaps = 11/443 (2%)

Query: 1   MEGLIKGLVDVALG--GGRDRDDREEEQRSRDERSRSSWAEVVSGDQDRDAQER--RRHS 56
           M+GLIKGL+DVALG  G  D  D     ++ DERSRS+W++VVSG++D+  +E   RR  
Sbjct: 1   MDGLIKGLIDVALGAVGNDDDGDHRSGSQNPDERSRSTWSQVVSGEEDKGEEENSGRRQG 60

Query: 57  QHNNQWSVQE----ESQVWQDEGSRPSRRPQKAVDEGHEKNE---GFNWNQNNWNREEKR 109
            H +QW+ +E    +++ W+  GSRPSRRPQKAV EG+EK+E     + NQN W ++E++
Sbjct: 61  HHRSQWNREEGKLGQTEEWEIAGSRPSRRPQKAVHEGYEKDEYGGQHDNNQNYWKQKEEK 120

Query: 110 EDNNDGWETVGRKPPRRQHKIQKEQWNGYKKPPNEQEYSNDVQIDDTLEPSEEELADLSQ 169
           E++NDGWETVG+KPPRR  K++ + WN YK+P + QEYS++++    +EPSEEEL D+SQ
Sbjct: 121 EESNDGWETVGKKPPRRPQKVKMDHWNKYKQPASGQEYSDEIEDGINIEPSEEELDDISQ 180

Query: 170 GCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKPTYSRFCSL 229
            C +LW+LD NRLVPGKDY+IDCG+GKK YQK+DMAQGSLF WL++DVFR+PT+SRFCSL
Sbjct: 181 ACNKLWKLDLNRLVPGKDYQIDCGEGKKVYQKEDMAQGSLFYWLNEDVFRRPTFSRFCSL 240

Query: 230 LDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTIS 289
           LDNYNP+ G+KEV+TSEE+QE+AAFIEEISRTAPIKYL KYLSAKGIVS NYQDFKRT++
Sbjct: 241 LDNYNPHEGYKEVITSEERQEEAAFIEEISRTAPIKYLFKYLSAKGIVSENYQDFKRTMT 300

Query: 290 SLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIF 349
           +LWFDLYGRGGTSSCSSAFEHVFVGEIK  GEQEVSGFHNWLQF LEEAKG VDYQGYIF
Sbjct: 301 NLWFDLYGRGGTSSCSSAFEHVFVGEIKNRGEQEVSGFHNWLQFYLEEAKGRVDYQGYIF 360

Query: 350 PRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGGEDNYVQLG 409
           PRRRGQ PDSETQLLT+QFEWNG+LKSVS+TLVGVSPEFEIALYTLCF+VGGEDN VQLG
Sbjct: 361 PRRRGQTPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEIALYTLCFYVGGEDNQVQLG 420

Query: 410 PYPVNIKCYRFGDRIGSVFPIAE 432
           PYPVNIKCYRFG++IGSVFPIAE
Sbjct: 421 PYPVNIKCYRFGNKIGSVFPIAE 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147767385|emb|CAN62441.1| hypothetical protein VITISV_032501 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552942|ref|XP_002517514.1| Placental protein 11 precursor, putative [Ricinus communis] gi|223543525|gb|EEF45056.1| Placental protein 11 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459026|ref|XP_004147247.1| PREDICTED: poly(U)-specific endoribonuclease-B-like [Cucumis sativus] gi|449519012|ref|XP_004166529.1| PREDICTED: poly(U)-specific endoribonuclease-B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565397|ref|XP_003550927.1| PREDICTED: poly(U)-specific endoribonuclease-B-like [Glycine max] Back     alignment and taxonomy information
>gi|297800400|ref|XP_002868084.1| hypothetical protein ARALYDRAFT_915009 [Arabidopsis lyrata subsp. lyrata] gi|297313920|gb|EFH44343.1| hypothetical protein ARALYDRAFT_915009 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|238480782|ref|NP_193443.3| uncharacterized protein [Arabidopsis thaliana] gi|20260612|gb|AAM13204.1| putative serine protease-like protein [Arabidopsis thaliana] gi|23197988|gb|AAN15521.1| putative serine protease-like protein [Arabidopsis thaliana] gi|332658449|gb|AEE83849.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224126407|ref|XP_002329546.1| predicted protein [Populus trichocarpa] gi|222870255|gb|EEF07386.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242073874|ref|XP_002446873.1| hypothetical protein SORBIDRAFT_06g024050 [Sorghum bicolor] gi|241938056|gb|EES11201.1| hypothetical protein SORBIDRAFT_06g024050 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|223948879|gb|ACN28523.1| unknown [Zea mays] gi|414586034|tpg|DAA36605.1| TPA: hypothetical protein ZEAMMB73_593267 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
ZFIN|ZDB-GENE-030131-3658290 si:dkey-222f8.3 "si:dkey-222f8 0.595 0.889 0.411 7.4e-50
ZFIN|ZDB-GENE-050522-373282 zgc:110053 "zgc:110053" [Danio 0.609 0.936 0.397 1.5e-49
UNIPROTKB|E1C036288 LOC418221 "Uncharacterized pro 0.612 0.920 0.392 2.9e-48
UNIPROTKB|Q8JFY9292 endou-a "Poly(U)-specific endo 0.602 0.893 0.394 5.4e-47
UNIPROTKB|B1WBB4292 endou-b "Poly(U)-specific endo 0.600 0.890 0.392 3e-46
UNIPROTKB|B1H3D5293 endou "Poly(U)-specific endori 0.602 0.890 0.384 3.8e-46
ZFIN|ZDB-GENE-060503-141309 si:dkey-103i16.2 "si:dkey-103i 0.593 0.831 0.393 4.5e-43
UNIPROTKB|P21128410 ENDOU "Poly(U)-specific endori 0.570 0.602 0.372 1.5e-42
RGD|1593011413 Endou "endonuclease, poly(U)-s 0.570 0.598 0.357 3.6e-41
MGI|MGI:97746412 Endou "endonuclease, polyU-spe 0.570 0.599 0.353 5.9e-41
ZFIN|ZDB-GENE-030131-3658 si:dkey-222f8.3 "si:dkey-222f8.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 114/277 (41%), Positives = 161/277 (58%)

Query:   166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKD------DMAQGSLFSWLSDDVFR 219
             +LS     LW+LD NR+ PG+DY+ID   GK  +  +      D A+  LFS ++++  +
Sbjct:    10 ELSNLLNELWKLDVNRMKPGRDYKIDL-QGKAGFVSEGSNSARDCARAPLFSHVNENKLK 68

Query:   220 K-PTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
                TY+ F +LLDNY  + G  E VT EE QE + F++ + +T  +K  H+YL +KG   
Sbjct:    69 SIDTYAYFITLLDNYETSTGVAEQVTKEELQENSLFLDAVLKTEVMKCAHRYLVSKGRAQ 128

Query:   279 GNYQDFKRTISSLWFDLYGR---GGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCL 335
              +   FKR +  +WF LY R   G   SC   FEHVFVGE K    +E+ G HNW+QF  
Sbjct:   129 SDMAQFKRQLYDIWFKLYRRDKSGAEDSCG--FEHVFVGETKHG--REIMGLHNWIQFYN 184

Query:   336 EEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTL 395
              E +  VDY+GY   R +   PD +  +L +QF WNG++K V    +GVSPEFE+ALYT+
Sbjct:   185 LEKQNIVDYKGYK-ARDKKDTPDEDDHVLNLQFSWNGLVKPVGGCFIGVSPEFEVALYTI 243

Query:   396 CFFVGGED--NY-VQLGPYPVNIKCYRFGDRIGSVFP 429
              F + GE   N  V++  Y + I  YRFG  IG+ +P
Sbjct:   244 IFLLSGEHMTNVRVKVDEYLLEIVVYRFGRYIGTSYP 280
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
ZFIN|ZDB-GENE-050522-373 zgc:110053 "zgc:110053" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C036 LOC418221 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8JFY9 endou-a "Poly(U)-specific endoribonuclease-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|B1WBB4 endou-b "Poly(U)-specific endoribonuclease-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|B1H3D5 endou "Poly(U)-specific endoribonuclease" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-141 si:dkey-103i16.2 "si:dkey-103i16.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P21128 ENDOU "Poly(U)-specific endoribonuclease" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1593011 Endou "endonuclease, poly(U)-specific" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:97746 Endou "endonuclease, polyU-specific" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
pfam09412261 pfam09412, XendoU, Endoribonuclease XendoU 1e-138
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.002
>gnl|CDD|220226 pfam09412, XendoU, Endoribonuclease XendoU Back     alignment and domain information 
 Score =  395 bits (1017), Expect = e-138
 Identities = 137/269 (50%), Positives = 173/269 (64%), Gaps = 9/269 (3%)

Query: 162 EELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFRKP 221
              A+LS    +LW+LD NR  PGKDY+++      +  K D+A   LF+++ +   RKP
Sbjct: 1   ATDAELSTLSQKLWDLDENRATPGKDYKLNLQGKTSSSSKTDLAPAPLFTYVDESKLRKP 60

Query: 222 TYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNY 281
           TY+ F +LLDNY  + G  EVVT EEKQEQ AF++EI +T  +KY H+YL +KG+V  + 
Sbjct: 61  TYAAFIALLDNYELDTGVAEVVTPEEKQEQNAFLDEILKTKVMKYAHRYLVSKGLVPSSP 120

Query: 282 QDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGN 341
            +FK+ +  LWF LY RGG    SS FEHVFVGEIK     EVSG HNW+QF LEE KGN
Sbjct: 121 AEFKKLLKELWFGLYSRGGGGLDSSGFEHVFVGEIKN---GEVSGLHNWVQFYLEEKKGN 177

Query: 342 VDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFFVGG 401
           VDY+GYI  R  G        +LTVQF WNG+LK V +  VG SPEFE+ALYT+CF    
Sbjct: 178 VDYKGYIKDRENG-----TDDVLTVQFTWNGLLKPVGSFFVGTSPEFELALYTVCFLARP 232

Query: 402 EDN-YVQLGPYPVNIKCYRFGDRIGSVFP 429
           E    V LG YP+NI   R+G  IGS +P
Sbjct: 233 EKECDVSLGGYPLNIVTIRWGRYIGSAYP 261

This is a family of endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis. XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. Length = 261
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
PF09412265 XendoU: Endoribonuclease XendoU; InterPro: IPR0189 100.0
KOG2849388 consensus Placental protein 11 [General function p 100.0
PF14436128 EndoU_bacteria: Bacterial EndoU nuclease 95.16
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog) Back     alignment and domain information 
Probab=100.00  E-value=1.8e-98  Score=729.92  Aligned_cols=260  Identities=48%  Similarity=0.905  Sum_probs=197.1

Q ss_pred             CCHHHHHHHHHHHHHHhhcccCCCCCCCceEEecCCCcccccCCCcccCCcccccCccccC-chhHHHHHHhhhccCCCC
Q 045723          159 PSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQKDDMAQGSLFSWLSDDVFR-KPTYSRFCSLLDNYNPNA  237 (433)
Q Consensus       159 ~t~~El~~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk~~~~~~D~A~~pLFs~V~e~~~~-~PTy~afiaLlDNY~~~t  237 (433)
                      +|++||+.|+   ++||++|+||++|+.||+||+|..+...+..|.|+.|||++||+++|+ +|||++|++|||||++++
T Consensus         1 ~t~~el~~~~---~~Lw~~D~Nr~~~~~~~~ln~Q~~~~~~~~~D~A~~pLf~~V~~~~~~~~pTy~af~~LlDNY~~~t   77 (265)
T PF09412_consen    1 VTDDELSNLS---QELWDLDENRATPGSDYTLNLQGKTSSSSTVDNAPDPLFTYVNESLLKSKPTYAAFIALLDNYERDT   77 (265)
T ss_dssp             -B-HHHHHHH---HHHHHT-TT---BTTTEEE---SBTT---------S-SEEEE-HHHHTTTSTHHHHHHHHHHTTSSS
T ss_pred             CCHHHHHHHH---HHHHHhhhccCCCCCCEEEecCCCcCCCCCCCCCCCCccccCCHHHhcCCCHHHHHHHHHhcccccc
Confidence            3566666665   699999999999999999999976666677999999999999999999 999999999999999999


Q ss_pred             CCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCCCCCCCCCcceeeeeeee
Q 045723          238 GHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGTSSCSSAFEHVFVGEIK  317 (433)
Q Consensus       238 g~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~g~~dSSGFEHVFVGE~K  317 (433)
                      |++|++|++|++|+++|||+||+|+|||.||+||++||+++.|+.+||++|++|||++|+|+++..||||||||||||+|
T Consensus        78 g~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~iWF~~Y~R~~~~~dSSGFEHVFvGE~k  157 (265)
T PF09412_consen   78 GVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKNIWFGLYSRGSGGLDSSGFEHVFVGEIK  157 (265)
T ss_dssp             STTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHTS-B-SSTTS--B-HHHHHTTS-SS
T ss_pred             CCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCccccCCCCCCCCcccceeeeeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999988899999999999999


Q ss_pred             cCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHHHHHHHhhh
Q 045723          318 QAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF  397 (433)
Q Consensus       318 ~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE~ALYTvCF  397 (433)
                      ++   +|+|||||||||++|++|+|||+||+.++..+. |    .||+|||+|+++.||+||||||||||||||||||||
T Consensus       158 ~~---~V~G~HNWi~fy~~Ek~g~~dY~Gy~~~~~~~~-~----~vlt~qf~w~~~~K~~gs~fiGtSPEfE~ALyT~cF  229 (265)
T PF09412_consen  158 GG---EVSGFHNWIQFYLQEKSGNVDYKGYIKKRDWGD-P----DVLTLQFSWNGYYKPVGSFFIGTSPEFEFALYTVCF  229 (265)
T ss_dssp             TT---S------HHHHHHHHHTTSEEEEEE---SSS--------TEEEEEEEETTBE---EEEE-S--HHHHHHHHHHHH
T ss_pred             CC---eEeeeEHHHHHHHHHhcCCceEEEEEecCCCCC-C----cEEEEEEEECCeeccCCceEecCCHHHHHHHHHHHH
Confidence            63   899999999999999999999999999887654 3    499999999999999999999999999999999999


Q ss_pred             hccCCC-ceEEeCCeeEEEEEEecC---CeEeeecc
Q 045723          398 FVGGED-NYVQLGPYPVNIKCYRFG---DRIGSVFP  429 (433)
Q Consensus       398 l~~~e~-~~v~l~g~~v~I~ty~~g---~~IgSaYP  429 (433)
                      |++++. |+|+|+||+++|+||+++   ++||||||
T Consensus       230 l~~~~~~c~v~l~g~~~~I~ty~~~~~~~~igtaYP  265 (265)
T PF09412_consen  230 LTRPERNCPVSLGGYPVNIQTYTWGYNGRYIGTAYP  265 (265)
T ss_dssp             HT-SSSEEEEEETTEEEEEEE---EEETTEEEEEEE
T ss_pred             hhcCCCceEEEECCEEEEEEEeecCCCCCEEeeeCC
Confidence            998664 999999999999999885   48999999

XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
>KOG2849 consensus Placental protein 11 [General function prediction only] Back     alignment and domain information
>PF14436 EndoU_bacteria: Bacterial EndoU nuclease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
2c1w_A292 The Structure Of Xendou: A Splicing Independent Sno 4e-49
>pdb|2C1W|A Chain A, The Structure Of Xendou: A Splicing Independent Snorna Processing Endoribonuclease Length = 292 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/276 (39%), Positives = 153/276 (55%), Gaps = 15/276 (5%)
Query: 166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFSWLSDDVFR 219
           +LS+    LW+ D NR+  GKDY I    GK  Y      Q  D A   LF ++ ++  +
Sbjct: 11  ELSKLFNELWDADQNRMKSGKDYRISL-QGKAGYVPAGSNQARDSASFPLFQFVDEEKLK 69
Query: 220 -KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
            + T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H YL  K    
Sbjct: 70  SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 129
Query: 279 GNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEE 337
               DFK  + ++WF LY R  G+   S  FEHVFVGE K+   QE+ G HNW+QF L+E
Sbjct: 130 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--QEMMGLHNWVQFYLQE 187
Query: 338 AKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 397
            + N+DY+GY+  R+    PD + Q+L +QF W  ++K V ++ +GVSPEFE ALYT+ F
Sbjct: 188 KRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVF 246
Query: 398 FVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPI 430
               E      V+L  Y + I   R G  IG+ +P+
Sbjct: 247 LASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPV 282

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
2c1w_A292 Endou protein, xendou; nuclease, snoRNA, endoribon 1e-105
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1 Length = 292 Back     alignment and structure
 Score =  313 bits (803), Expect = e-105
 Identities = 110/285 (38%), Positives = 154/285 (54%), Gaps = 18/285 (6%)

Query: 158 EPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAY------QKDDMAQGSLFS 211
                EL+ L      LW+ D NR+  GKDY I    GK  Y      Q  D A   LF 
Sbjct: 6   GQLNHELSKLFN---ELWDADQNRMKSGKDYRISL-QGKAGYVPAGSNQARDSASFPLFQ 61

Query: 212 WLSDD-VFRKPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKY 270
           ++ ++ +  + T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H Y
Sbjct: 62  FVDEEKLKSRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDY 121

Query: 271 LSAKGIVSGNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHN 329
           L  K        DFK  + ++WF LY R  G+   S  FEHVFVGE K+   QE+ G HN
Sbjct: 122 LVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKR--GQEMMGLHN 179

Query: 330 WLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFE 389
           W+QF L+E + N+DY+GY+  + + + PD + Q+L +QF W  ++K V ++ +GVSPEFE
Sbjct: 180 WVQFYLQEKRKNIDYKGYVARQNKSR-PDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFE 238

Query: 390 IALYTLCFFVGGEDN---YVQLGPYPVNIKCYRFGDRIGSVFPIA 431
            ALYT+ F    E      V+L  Y + I   R G  IG+ +P+ 
Sbjct: 239 FALYTIVFLASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPVL 283

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
2c1w_A292 Endou protein, xendou; nuclease, snoRNA, endoribon 100.0
2h85_A347 Putative ORF1AB polyprotein; endoribonuclease, RNA 95.66
>2c1w_A Endou protein, xendou; nuclease, snoRNA, endoribonuclease, splicing independent processing; 2.2A {Xenopus laevis} SCOP: d.294.1.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-100  Score=751.77  Aligned_cols=270  Identities=39%  Similarity=0.714  Sum_probs=245.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhhcccCCCCCCCceEEecCCCc-----ccccCCCcccCCcccccCccccCc-hhHHHHHHhh
Q 045723          157 LEPSEEELADLSQGCYRLWELDSNRLVPGKDYEIDCGDGK-----KAYQKDDMAQGSLFSWLSDDVFRK-PTYSRFCSLL  230 (433)
Q Consensus       157 ~~~t~~El~~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk-----~~~~~~D~A~~pLFs~V~e~~~~~-PTy~afiaLl  230 (433)
                      ..+|++||+.|+   ++||++|+||+.|++||+||+|..+     ++.+..|.||.|||++||+++|++ |||++|++||
T Consensus         5 ~~vtd~el~~l~---~~Lw~~D~Nr~~~~~d~~lnlQ~~~~~~~~~~~~~~D~A~~pLF~~V~~~~l~~~pTy~~f~~Ll   81 (292)
T 2c1w_A            5 RGQLNHELSKLF---NELWDADQNRMKSGKDYRISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKSRKTFATFISLL   81 (292)
T ss_dssp             -CCBCHHHHHHH---HHHHHTCTTCCCBTTTEEECCCSBSSCC---------CCCSCSEEEECHHHHTTTSTHHHHHHHH
T ss_pred             ccCCHHHHHHHH---HHHHHhhcccCCCCCCEEEecCCCccccccccCCCCCCCCCccccccCHHHhcCCCHHHHHHHHH
Confidence            457889888886   5999999999999999999999655     345789999999999999999977 9999999999


Q ss_pred             hccCCCCCCCCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCC-CCCCCCCcc
Q 045723          231 DNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGG-TSSCSSAFE  309 (433)
Q Consensus       231 DNY~~~tg~~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~-g~~dSSGFE  309 (433)
                      |||+++||++|++|++|++|+++|||+||+|+|||.||+||++||++++|+.+||++|++|||++|+|++ +..||||||
T Consensus        82 DNY~~~tg~~E~vT~~E~~E~~~FLd~i~~T~vmk~a~~fL~~kg~~~~d~~~Fk~~L~~iWF~~YsR~~g~~~dSSGFE  161 (292)
T 2c1w_A           82 DNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFE  161 (292)
T ss_dssp             HHHHHCCSCSSCCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHH
T ss_pred             hhhccccCCCCcCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhhhccCCCCCCCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985 478999999


Q ss_pred             eeeeeeeecCCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHH
Q 045723          310 HVFVGEIKQAGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFE  389 (433)
Q Consensus       310 HVFVGE~K~~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE  389 (433)
                      ||||||+|++  ++|+|||||||||++|++|+|||+||+.+.. +..||++++||+|||+|+|+.||+||||||||||||
T Consensus       162 HVFvGE~k~g--~~V~G~HNWi~fY~~Ek~g~idY~Gy~~~~~-~~~~~~~~~vl~~qf~w~g~~K~~gs~fvGtSPEfE  238 (292)
T 2c1w_A          162 HVFVGESKRG--QEMMGLHNWVQFYLQEKRKNIDYKGYVARQN-KSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFE  238 (292)
T ss_dssp             HHTTSCSSSS--CSCCCCCCHHHHHHHHHTTCEEEEEECCCSS-SCCCCTTCSEEEEEEEETTBCCCCEEEECSCCHHHH
T ss_pred             eEEEEEeecC--CEEEEEehHHHHHHHHhcCCCcccceeeccc-ccCCCCCCcEEEEEEEeCCccccccceEeeCChHHH
Confidence            9999999962  4899999999999999999999999997654 356788899999999999999999999999999999


Q ss_pred             HHHHHhhhhccCCC---ceEEeCCeeEEEEEEecCCeEeeecccCC
Q 045723          390 IALYTLCFFVGGED---NYVQLGPYPVNIKCYRFGDRIGSVFPIAE  432 (433)
Q Consensus       390 ~ALYTvCFl~~~e~---~~v~l~g~~v~I~ty~~g~~IgSaYP~~~  432 (433)
                      |||||||||++++.   |+|+|+|++++|+||++|++||||||++.
T Consensus       239 lALYTvCFl~~~~~~~~c~v~l~g~~~~I~ty~~G~~I~sayP~~~  284 (292)
T 2c1w_A          239 FALYTIVFLASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPVLL  284 (292)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             HHHHHHHHhhCCCCCccceEEECCEEEEEEEEeCCCEEEEeccccc
Confidence            99999999999876   99999999999999999999999999864
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48 d.294.1.2 PDB: 2ozk_A 2rhb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d2c1wa1284 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xe 1e-109
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 284 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EndoU-like
superfamily: EndoU-like
family: Eukaryotic EndoU ribonuclease
domain: EndoU
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  322 bits (827), Expect = e-109
 Identities = 105/277 (37%), Positives = 150/277 (54%), Gaps = 13/277 (4%)

Query: 165 ADLSQGCYRLWELDSNRLVPGKDYEIDCGDGKKAYQ-----KDDMAQGSLFSWLSDDVFR 219
            +LS+    LW+ D NR+  GKDY I                 D A   LF ++ ++  +
Sbjct: 5   HELSKLFNELWDADQNRMKSGKDYRISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLK 64

Query: 220 -KPTYSRFCSLLDNYNPNAGHKEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVS 278
            + T++ F SLLDNY  + G  EVVT EE  E   F++ I  T  +K  H YL  K    
Sbjct: 65  SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 124

Query: 279 GNYQDFKRTISSLWFDLYGRG-GTSSCSSAFEHVFVGEIKQAGEQEVSGFHNWLQFCLEE 337
               DFK  + ++WF LY R  G+   S  FEHVFVGE K+   QE+ G HNW+QF L+E
Sbjct: 125 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKRG--QEMMGLHNWVQFYLQE 182

Query: 338 AKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCF 397
            + N+DY+GY+  + + + PD + Q+L +QF W  ++K V ++ +GVSPEFE ALYT+ F
Sbjct: 183 KRKNIDYKGYVARQNKSR-PDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVF 241

Query: 398 FVGGEDN---YVQLGPYPVNIKCYRFGDRIGSVFPIA 431
               E      V+L  Y + I   R G  IG+ +P+ 
Sbjct: 242 LASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPVL 278

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d2c1wa1284 EndoU {African clawed frog (Xenopus laevis) [TaxId 100.0
d2h85a2155 Nsp15, C-terminal domain {SARS coronavirus [TaxId: 96.68
d2gtia2153 Nsp15, C-terminal domain {Murine hepatitis virus, 81.87
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EndoU-like
superfamily: EndoU-like
family: Eukaryotic EndoU ribonuclease
domain: EndoU
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=2.1e-97  Score=723.98  Aligned_cols=263  Identities=40%  Similarity=0.736  Sum_probs=237.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCceEEecCCCcc-----cccCCCcccCCcccccCcccc-CchhHHHHHHhhhccCCCCCC
Q 045723          166 DLSQGCYRLWELDSNRLVPGKDYEIDCGDGKK-----AYQKDDMAQGSLFSWLSDDVF-RKPTYSRFCSLLDNYNPNAGH  239 (433)
Q Consensus       166 ~LS~~~~~Lw~~D~Nr~~pg~dy~I~~q~gk~-----~~~~~D~A~~pLFs~V~e~~~-~~PTy~afiaLlDNY~~~tg~  239 (433)
                      +||.+|++||++|+||+.|++||+||+|..+.     +.+..|.|+.|||++||+.+| ++|||++|++|||||+++||+
T Consensus         6 eLs~i~~~Lw~~D~Nr~~~g~dy~inlqgk~~~~~~~~~~~~D~A~~pLF~~V~e~~l~~~pTy~~f~~LlDNY~~~tg~   85 (284)
T d2c1wa1           6 ELSKLFNELWDADQNRMKSGKDYRISLQGKAGYVPAGSNQARDSASFPLFQFVDEEKLKSRKTFATFISLLDNYEMDTGV   85 (284)
T ss_dssp             HHHHHHHHHHHTCTTCCCBTTTEEECCCSBSSCC---------CCCSCSEEEECHHHHTTTSTHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHhcccccCCCCCCeEEeccCcccccccCCCccccccccchhhhcCHHHhcCCchHHHHHHHhCccccccCC
Confidence            56666789999999999999999999994332     235789999999999998855 589999999999999999999


Q ss_pred             CCcCChHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcccccccCCC-CCCCCCcceeeeeeeec
Q 045723          240 KEVVTSEEKQEQAAFIEEISRTAPIKYLHKYLSAKGIVSGNYQDFKRTISSLWFDLYGRGGT-SSCSSAFEHVFVGEIKQ  318 (433)
Q Consensus       240 ~E~vT~eE~~E~~~FLdai~~T~VMk~a~~fL~~Kg~~~~d~~eFK~~L~~iWF~lYsR~~g-~~dSSGFEHVFVGE~K~  318 (433)
                      +|++|++|++|+++|||+||+|+|||.||+||++||+++.|+.+||++|++|||++|+|++| ..||||||||||||+|+
T Consensus        86 ~E~vT~eE~~E~~~FL~~i~~T~vmk~~~~fL~~kg~~~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHVFvGE~k~  165 (284)
T d2c1wa1          86 AEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAKPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKR  165 (284)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSSCSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHHTTSCSSS
T ss_pred             ccccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceEeeccccC
Confidence            99999999999999999999999999999999999999999999999999999999999865 47999999999999986


Q ss_pred             CCCceeeeehhHHHHHHHHhcCCcceeeeeeccCCCCCCCCCCcEEEEEEEECCeeeeeceEEecCChHHHHHHHHhhhh
Q 045723          319 AGEQEVSGFHNWLQFCLEEAKGNVDYQGYIFPRRRGQVPDSETQLLTVQFEWNGILKSVSTTLVGVSPEFEIALYTLCFF  398 (433)
Q Consensus       319 ~Gg~~VsGfHNWIqFYl~Ek~g~idY~GYi~~~~~g~~pd~~~~vltlqF~W~g~~K~vGS~FIGTSPEFE~ALYTvCFl  398 (433)
                      +  ++|+|||||||||++|++|+|||+||+.+... ..||.+++||+|||+|+|+.||+||||||||||||||||||||+
T Consensus       166 g--~~V~G~HNWi~fy~~Ek~g~vdY~Gy~~~~~~-~~~~~~~~vltiqf~w~g~~K~~gs~FvGtSPEfElAlYTvCFl  242 (284)
T d2c1wa1         166 G--QEMMGLHNWVQFYLQEKRKNIDYKGYVARQNK-SRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVFL  242 (284)
T ss_dssp             S--CSCCCCCCHHHHHHHHHTTCEEEEEECCCSSS-CCCCTTCSEEEEEEEETTBCCCCEEEECSCCHHHHHHHHHHHHH
T ss_pred             C--CcccceehHHHHHHHHHcCCcccccccccccc-CCCCCCCcEEEEEEEecCccccccceEecCCHHHHHHHHHHHHH
Confidence            3  47999999999999999999999999987654 45888999999999999999999999999999999999999999


Q ss_pred             ccCCC-c--eEEeCCeeEEEEEEecCCeEeeecccC
Q 045723          399 VGGED-N--YVQLGPYPVNIKCYRFGDRIGSVFPIA  431 (433)
Q Consensus       399 ~~~e~-~--~v~l~g~~v~I~ty~~g~~IgSaYP~~  431 (433)
                      ++++. |  .|.++++.++|+||+.|++||||||++
T Consensus       243 ~~~~~~~~~~v~~~~~~~~i~~~r~~~~IgtaYP~~  278 (284)
T d2c1wa1         243 ASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPVL  278 (284)
T ss_dssp             TCSSSEEEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             hCCCCCcceEEeeCCEEEEEEEecCCCEEEEECcee
Confidence            98764 6  689999999999999999999999986
>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS coronavirus [TaxId: 227859]} Back     information, alignment and structure
>d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine hepatitis virus, MHV [TaxId: 11138]} Back     information, alignment and structure