Citrus Sinensis ID: 045724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MASKLVLLLVFVLDLILLDSLLLlsrggllydkdiatglgaGSFLFLLISQIVIMAASRCLccgramrpsgARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRymggrnlscetlrkgvfgagAAFVVLTGIISELYYVSysrandgqasynkdtgirmgnl
Flexible Loop (DISEMBL)
MASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYsrandgqasynkdtgirmgnl
Low Complexity Region (SEG)
MASKlvlllvfvldlilldsllllsrggllYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL
Disordered region (IsUnstruct)
****LVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSR*******************
Disordered Region (DISOPRED)
*ASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCC******S*ARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVS**********************
Disordered Region (DISEMBL)
MASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL
Disordered Region (DISPRO)
*ASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRAN*****************
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
255555967	179	conserved hypothetical protein [Ricinus	0.988	0.927	0.646	3e-54
388492496	183	unknown [Medicago truncatula] gi|3885215	1.0	0.918	0.595	8e-53
18407003	180	uncharacterized protein [Arabidopsis tha	0.815	0.761	0.733	1e-52
217071402	183	unknown [Medicago truncatula]	1.0	0.918	0.590	3e-52
21554630	180	unknown [Arabidopsis thaliana]	0.815	0.761	0.726	4e-52
363807072	183	uncharacterized protein LOC100817583 pre	1.0	0.918	0.595	1e-51
297837371	180	hypothetical protein ARALYDRAFT_893423 [	0.815	0.761	0.712	2e-51
255582471	184	conserved hypothetical protein [Ricinus	0.994	0.907	0.532	5e-51
356548763	183	PREDICTED: uncharacterized protein LOC10	0.821	0.754	0.683	2e-50
449446953	184	PREDICTED: uncharacterized protein LOC10	0.994	0.907	0.538	5e-50

>gi|255555967|ref|XP_002519018.1| conserved hypothetical protein [Ricinus communis] gi|223541681|gb|EEF43229.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/181 (64%), Positives = 140/181 (77%), Gaps = 15/181 (8%)

Query: 1   MASKLVLLLVFVLDLILL----------DSLLLLSRGGL---LYDKDIATGLGAGSFLFL 47
           MAS L+L++VFV DLI            ++  +  +G      YD DIATGLG G+ LFL
Sbjct: 1   MASTLLLVIVFVFDLIAFGLAVAAEQRRNTATVQKQGDYNYCQYDSDIATGLGVGALLFL 60

Query: 48  LISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKY 107
           L SQ++IMAASRCLCCGRA+RPSG+R WAIVLFITCWVFF+IAE+CLLA S++NAYHTK+
Sbjct: 61  LASQLLIMAASRCLCCGRAIRPSGSRTWAIVLFITCWVFFIIAEVCLLAASIQNAYHTKF 120

Query: 108 RRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGN 167
             Y+   + +C  LRKGVFGAGAAFV+ TGIISELYYVSYSRAN GQASY +DTG+RMGN
Sbjct: 121 --YLARFSPNCRELRKGVFGAGAAFVIFTGIISELYYVSYSRANGGQASYGRDTGVRMGN 178

Query: 168 L 168
           L
Sbjct: 179 L 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492496|gb|AFK34314.1| unknown [Medicago truncatula] gi|388521539|gb|AFK48831.1| unknown [Medicago truncatula]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 130/183 (71%), Gaps = 15/183 (8%)

Query: 1   MASKLVLLLVFVLDLILLDSLL--------------LLSRGGLLYDKDIATGLGAGSFLF 46
           MAS L+L++VFV DLI     +              +  R    YD DIATGLG GS   
Sbjct: 1   MASSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 47  LLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTK 106
           L+ SQ++IM  +RCLCCGRAMRPSG+R WAI LFIT W+ FLIA  CLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 107 YRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQ-ASYNKDTGIRM 165
           YR  +G R  SC+TLRKGVFGAGAAF+VLTGI+SELYYVS+S+AN+G    Y +DTG+ M
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTM 180

Query: 166 GNL 168
            NL
Sbjct: 181 SNL 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407003|ref|NP_564769.1| uncharacterized protein [Arabidopsis thaliana] gi|16930461|gb|AAL31916.1|AF419584_1 unknown protein [Arabidopsis thaliana] gi|19310519|gb|AAL84993.1| At1g61067/At1g61067 [Arabidopsis thaliana] gi|332195652|gb|AEE33773.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 116/139 (83%), Gaps = 2/139 (1%)

Query: 30  LYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLI 89
           +YDKDIATGLG GSFL LL SQ++IM ASRCLCCGRA+ PSG+R WAI LFIT WVFF I
Sbjct: 44  VYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFI 103

Query: 90  AEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
           A++CLLAGSVRNAYHTKYR Y G  + SC +LRKGVFGAGAAF+VLTGI+SELYYV+ SR
Sbjct: 104 AQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSR 163

Query: 150 ANDGQASYNKDTGIRMGNL 168
           A D Q S  +D GIRM +L
Sbjct: 164 AKDFQPS--RDPGIRMSSL 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071402|gb|ACJ84061.1| unknown [Medicago truncatula]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 129/183 (70%), Gaps = 15/183 (8%)

Query: 1   MASKLVLLLVFVLDLILLDSLL--------------LLSRGGLLYDKDIATGLGAGSFLF 46
           M S L+L++VFV DLI     +              +  R    YD DIATGLG GS   
Sbjct: 1   MVSSLLLVVVFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFI 60

Query: 47  LLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTK 106
           L+ SQ++IM  +RCLCCGRAMRPSG+R WAI LFIT W+ FLIA  CLLAGSV+NAYHTK
Sbjct: 61  LVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTK 120

Query: 107 YRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQ-ASYNKDTGIRM 165
           YR  +G R  SC+TLRKGVFGAGAAF+VLTGI+SELYYVS+S+AN+G    Y +DTG+ M
Sbjct: 121 YRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTM 180

Query: 166 GNL 168
            NL
Sbjct: 181 SNL 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554630|gb|AAM63639.1| unknown [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/139 (72%), Positives = 115/139 (82%), Gaps = 2/139 (1%)

Query: 30  LYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLI 89
           +YDKDIATGLG GSFL LL SQ++IM ASRCLCCGRA+ PSG+R WAI LFIT WVFF I
Sbjct: 44  VYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFI 103

Query: 90  AEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
           A++CLLAGSVRNAYHTKYR Y G  + SC +LRKGVFGAGAAF+VLTGI+SELYYV+ SR
Sbjct: 104 AQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSR 163

Query: 150 ANDGQASYNKDTGIRMGNL 168
             D Q S  +D GIRM +L
Sbjct: 164 TKDFQPS--RDPGIRMSSL 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807072|ref|NP_001242586.1| uncharacterized protein LOC100817583 precursor [Glycine max] gi|255640558|gb|ACU20564.1| unknown [Glycine max]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 127/183 (69%), Gaps = 15/183 (8%)

Query: 1   MASKLVLLLVFVLDLILLDSLLLLS--------------RGGLLYDKDIATGLGAGSFLF 46
           MAS L+L +VFVLDL+     +                 R    YD DIATGLG GS   
Sbjct: 1   MASSLLLAVVFVLDLVAFALAVAAEQRRNTASLNKDSAGRNYCQYDSDIATGLGVGSLFI 60

Query: 47  LLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTK 106
           L+ SQ++IM  +RCL CGRAMRPSG+R W+I LFIT WV F+IA  CLLAGSVRNAYHTK
Sbjct: 61  LVASQVIIMVVTRCLRCGRAMRPSGSRSWSICLFITSWVTFIIAASCLLAGSVRNAYHTK 120

Query: 107 YRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRA-NDGQASYNKDTGIRM 165
           YR  MG R  SC+TLRKGVFGAGAAF+VLTGI SELYYVS+S+A N+G   Y +DTG+RM
Sbjct: 121 YRDLMGERAPSCQTLRKGVFGAGAAFIVLTGITSELYYVSFSKANNNGPPPYARDTGVRM 180

Query: 166 GNL 168
            N 
Sbjct: 181 ANF 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837371|ref|XP_002886567.1| hypothetical protein ARALYDRAFT_893423 [Arabidopsis lyrata subsp. lyrata] gi|297332408|gb|EFH62826.1| hypothetical protein ARALYDRAFT_893423 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 114/139 (82%), Gaps = 2/139 (1%)

Query: 30  LYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLI 89
           +YDKDIATGLG GSFL LL SQ++IM ASRCLCCGRA+ PSG+R WAI LFIT WVFF I
Sbjct: 44  VYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFI 103

Query: 90  AEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
           A++CLLAGSVRNAYHTKY  Y G  + SC +LRKGVFGAGAAF+VLTGI+SELYYV+ SR
Sbjct: 104 AQVCLLAGSVRNAYHTKYHVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSR 163

Query: 150 ANDGQASYNKDTGIRMGNL 168
           A D Q    +D GIRM ++
Sbjct: 164 AKDFQPP--RDPGIRMSSI 180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582471|ref|XP_002532022.1| conserved hypothetical protein [Ricinus communis] gi|223528317|gb|EEF30361.1| conserved hypothetical protein [Ricinus communis]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 97/182 (53%), Positives = 125/182 (68%), Gaps = 15/182 (8%)

Query: 1   MASKLVLLLVFVLDLI---------------LLDSLLLLSRGGLLYDKDIATGLGAGSFL 45
           MASKL+L+ VF+ DLI               ++     ++    +YD DIATG G G+FL
Sbjct: 1   MASKLLLITVFIFDLIAFGLAVAAEQRRSTAVIKQDAEVNYNYCVYDSDIATGYGVGAFL 60

Query: 46  FLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHT 105
           FL++SQ++IM AS+C CCG+A+ P G+R WA++LFITCWVFF IAE+CLLAGSVRNAYHT
Sbjct: 61  FLMLSQVIIMVASQCFCCGKALNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHT 120

Query: 106 KYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRM 165
           KYR         C+ LRKGVFGAGAAF + T I+S+ YYV YS+A DG   Y ++TG+ M
Sbjct: 121 KYRTVFSDNPPDCQMLRKGVFGAGAAFSLFTLIVSQFYYVCYSKARDGFQPYGRETGVPM 180

Query: 166 GN 167
           G 
Sbjct: 181 GT 182

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548763|ref|XP_003542769.1| PREDICTED: uncharacterized protein LOC100792378 [Glycine max]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 110/139 (79%), Gaps = 1/139 (0%)

Query: 31  YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
           YD DIAT LG GSF  L+ SQ++IM  +RCLCCG+AMRPSG+R WAI LFIT WV F IA
Sbjct: 45  YDSDIATNLGVGSFFILVASQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITSWVTFFIA 104

Query: 91  EICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRA 150
             CLLAGSVRNAYHT YR  MG R  SC+TLRKGVFGAGAAF++  GI S+LYYVS+S+A
Sbjct: 105 ASCLLAGSVRNAYHTNYRDLMGERAPSCQTLRKGVFGAGAAFIIFKGITSDLYYVSFSKA 164

Query: 151 -NDGQASYNKDTGIRMGNL 168
            N+G   Y +DTG+RMGNL
Sbjct: 165 NNNGPPPYARDTGVRMGNL 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446953|ref|XP_004141234.1| PREDICTED: uncharacterized protein LOC101208795 [Cucumis sativus] gi|449498665|ref|XP_004160599.1| PREDICTED: uncharacterized protein LOC101224700 [Cucumis sativus]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 123/182 (67%), Gaps = 15/182 (8%)

Query: 1   MASKLVLLLVFVLDLILLDSLLLLSR---------------GGLLYDKDIATGLGAGSFL 45
           MASKL+L++VFVLD+I     +   +                  +YD DI+TG G G+FL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 46  FLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHT 105
            L+ SQ +IMAASRC CCG+++ P G+R WA++LFI CWVFF IAE+CL AGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 106 KYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRM 165
           KYR   G    SC+TLRKGVFGAGAAF+ L  I+SELYYV YS+A +    Y  +TG+ M
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 166 GN 167
           G 
Sbjct: 181 GT 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.809	0.755	0.739	5.1e-51
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.732	0.702	0.629	3.6e-41
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.726	0.697	0.609	6.1e-39
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.75	0.728	0.571	9.2e-36
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.696	0.622	0.458	6.2e-30
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.809	0.676	0.437	4e-26
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.791	0.636	0.338	8.8e-15

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 102/138 (73%), Positives = 115/138 (83%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
             YDKDIATGLG GSFL LL SQ++IM ASRCLCCGRA+ PSG+R WAI LFIT WVFF IA
Sbjct:    45 YDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIA 104

Query:    91 EICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRA 150
             ++CLLAGSVRNAYHTKYR Y G  + SC +LRKGVFGAGAAF+VLTGI+SELYYV+ SRA
Sbjct:   105 QVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRA 164

Query:   151 NDGQASYNKDTGIRMGNL 168
              D Q S  +D GIRM +L
Sbjct:   165 KDFQPS--RDPGIRMSSL 180

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
             Y  DIAT  GAG+F+ L ISQ++IM ASRC CCG+A++P G+R   I+LF+ CWVFFLIA
Sbjct:    46 YGSDIATSYGAGAFVLLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIA 105

Query:    91 EICLLAGSVRNAYHTKYRRYMGGRNL-SCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
             E+CLLAGS+RNAYHT YRR     N  SCE +RKGVF AGA+F + T I+S+ YY+SYSR
Sbjct:   106 EVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSR 165

Query:   150 ANDG 153
             A DG
Sbjct:   166 ARDG 169

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 75/123 (60%), Positives = 95/123 (77%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
             Y  DIAT  GAG+F+ L +SQ++IMAASRC CCG+++ P G+R  AI+LF+ CWVFFLIA
Sbjct:    46 YGTDIATSYGAGAFVLLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIA 105

Query:    91 EICLLAGSVRNAYHTKYRRYMGGRNL-SCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
             E+CLLA S+RNAYHT+YR+     +  SCE +RKGVF AGAAF + T I+S+ YYV YSR
Sbjct:   106 EMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSR 165

Query:   150 AND 152
             A D
Sbjct:   166 ARD 168

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 72/126 (57%), Positives = 87/126 (69%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
             YD D ATG G G+FLF + SQI+IM  SRC CCG+ ++P G+R  A++LFI  W+FFLIA
Sbjct:    46 YDSDRATGYGVGAFLFSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIA 105

Query:    91 EICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRA 150
             EICLLAGSV NAYHTKYR         C+TLRKGVF AGA+FV    I+S+ YY  Y  A
Sbjct:   106 EICLLAGSVENAYHTKYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSA 165

Query:   151 NDGQAS 156
              +   S
Sbjct:   166 AEASLS 171

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 55/120 (45%), Positives = 87/120 (72%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIA 90
             YD D+ATG G G+FLFLL S+ ++M+ ++C+C GR + P   R W+I+ FI+ W+ FL+A
Sbjct:    50 YDSDVATGYGVGAFLFLLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVA 109

Query:    91 EICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRA 150
             E C++AG+ +NAYHTKY   +  +  SC +LRKG+F AGA F+V T +++  YY+ ++++
Sbjct:   110 EACVIAGATKNAYHTKY---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKS 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 60/137 (43%), Positives = 85/137 (62%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAM-RPSGARVWAIVLFITCWVFFLI 89
             Y  + +T  G  +F  LL+SQ V+   ++CLC G+ +   +   VWAIV F+  WV FL 
Sbjct:    47 YGTEASTVYGMSAFGLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLG 106

Query:    90 AEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSR 149
             AE CLL GS RNAYHTK      G+ LSC  L  GVF AGAAF +++ I + LYY+++S+
Sbjct:   107 AEACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSK 166

Query:   150 ANDGQASYNKDTGIRMG 166
             A+ G    +++ GI +G
Sbjct:   167 ADTGGWEKHQNDGINIG 183

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 47/139 (33%), Positives = 71/139 (51%)

Query:    31 YDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVL--FITCWVFFL 88
             Y +  A  LG  S LFL+++QI++  +S C CC +   PS +  W I L  F+  W  F+
Sbjct:    49 YPRSPAFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAPSRSN-WIISLICFVVSWFTFV 107

Query:    89 IAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSY- 147
             IA + LL+G+  N  HT+    M      C  ++ GVF  GA   ++T  +  +YY+   
Sbjct:   108 IAFLVLLSGAALNDEHTE--ESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLT 165

Query:   148 SRANDGQASYNKDTGIRMG 166
             S      A+  + TGI MG
Sbjct:   166 SNKQIVAATTTQGTGIAMG 184


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       142   0.00091  102 3  11 22  0.48    30
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.01u 0.13s 14.14t   Elapsed:  00:00:01
  Total cpu time:  14.01u 0.13s 14.14t   Elapsed:  00:00:01
  Start:  Fri May 10 02:18:28 2013   End:  Fri May 10 02:18:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	9e-30

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score =  104 bits (261), Expect = 9e-30
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 5/99 (5%)

Query: 42  GSFLFLLISQIVIMAASRCLCCGRAMRPS--GARVWAIVLFITCWVFFLIAEICLLAGSV 99
            + +FL ++Q+V      C CCG+A+ P     R  A+V F+  W+ F+IA   LLAG+ 
Sbjct: 1   AAAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAA 60

Query: 100 RNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGI 138
           RNAYHT+Y  +      SC TL+KGVF AGA   +L  +
Sbjct: 61  RNAYHTRYNVHF---RPSCYTLKKGVFAAGAVLSLLAAL 96

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.97
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	89.55
cd07912	418	Tweety_N N-terminal domain of the protein encoded	88.81
PF09788	256	Tmemb_55A: Transmembrane protein 55A; InterPro: IP	85.15
PF05360	53	YiaAB: yiaA/B two helix domain; InterPro: IPR00802	80.62

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.97  E-value=1.5e-31  Score=195.89  Aligned_cols=95  Identities=43%  Similarity=0.820  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCcccccc
Q 045724           42 GSFLFLLISQIVIMAASRCLCCGRAMRP--SGARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCE  119 (168)
Q Consensus        42 ~A~v~Ll~aqvi~~~~~~C~cc~~~~~~--s~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~  119 (168)
                      +|++||+++|+++|+++||+||+++.+|  +++|+++++||++||++|++||++|++|+++|++|+|+++++   +++|+
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~   77 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY   77 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence            4899999999999999999999988766  479999999999999999999999999999999999999875   78999


Q ss_pred             ccccceehhhHHHHHHHHHH
Q 045724          120 TLRKGVFGAGAAFVVLTGII  139 (168)
Q Consensus       120 ~~k~GvFa~aA~l~l~t~~~  139 (168)
                      ++|+|+|++||+|+|+|++|
T Consensus        78 ~~k~GvF~~~a~l~l~t~~f   97 (97)
T PF06749_consen   78 TVKKGVFAGGAVLSLVTALF   97 (97)
T ss_pred             ccCCceeeHhHHHHHHHHhC
Confidence            99999999999999999875

Family members contain a number of conserved cysteine residues.

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=89.55  E-value=1.7  Score=33.90  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             chhHHHHHHHHHHHHHhhheeecCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-ChHHHHHHHH
Q 045724            3 SKLVLLLVFVLDLILLDSLLLLSRGGLLYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSG-ARVWAIVLFI   81 (168)
Q Consensus         3 ~~~v~~vv~~lgliAfiLgik~d~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~~~~C~cc~~~~~~s~-~r~~ai~~~v   81 (168)
                      +-...++.++++..++++|+-. -..|...+-+...|.+.+++++++.=++....=.=..|+ +.++.. +=..+-.+++
T Consensus        65 a~afaIisi~~~~~a~v~g~~~-l~~~~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~~~~~~yg~GF~L~v  142 (155)
T PF07344_consen   65 AQAFAIISIFVYGAAFVLGVLL-LCCCSCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALKSRGYKYGAGFALFV  142 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-CccCCCcccCccHHHHH
Confidence            3456778888889999998820 001344455678889999888877766544433323454 333333 3356788999


Q ss_pred             HHHHHHHHHHHHH
Q 045724           82 TCWVFFLIAEICL   94 (168)
Q Consensus        82 ~SWi~f~iA~~lL   94 (168)
                      .+|+..+++.+.|
T Consensus       143 ~aw~l~~i~ii~L  155 (155)
T PF07344_consen  143 AAWCLDIINIIFL  155 (155)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987754

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=88.81  E-value=2.3  Score=38.82  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=17.7

Q ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHhccccCCC
Q 045724           36 ATGL-GAGSFLFLLISQIVIMAASRCLCCGRA   66 (168)
Q Consensus        36 A~~l-Gi~A~v~Ll~aqvi~~~~~~C~cc~~~   66 (168)
                      |+++ |..|++.+++.=+...+...|.||+++
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~   69 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCDRK   69 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            5555 556666666665666655556544433

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate

Probab=85.15  E-value=2.4  Score=36.32  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=42.6

Q ss_pred             HHHhccccCCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHH
Q 045724           56 AASRCLCCGRAMRPS--GARVWAIVLFITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFV  133 (168)
Q Consensus        56 ~~~~C~cc~~~~~~s--~~r~~ai~~~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~  133 (168)
                      ...+|+.|+|...-+  -.|..+++||+++-+.+++|..+. +|+-..+.+                 +.|++..-..+-
T Consensus       176 tlARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~-----------------~~giY~~wv~~~  237 (256)
T PF09788_consen  176 TLARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT-----------------YGGIYVSWVGLF  237 (256)
T ss_pred             ccccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh-----------------cCcEeHHHHHHH
Confidence            347999998754333  488899999999988866666554 566544311                 346666666665


Q ss_pred             HHHHHH
Q 045724          134 VLTGII  139 (168)
Q Consensus       134 l~t~~~  139 (168)
                      |++.++
T Consensus       238 l~a~~~  243 (256)
T PF09788_consen  238 LIALIC  243 (256)
T ss_pred             HHHHHH
Confidence            555444

>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section

Probab=80.62  E-value=2.4  Score=27.66  Aligned_cols=44  Identities=25%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccccCCccccccccccceehhhHHHHHHHHH
Q 045724           80 FITCWVFFLIAEICLLAGSVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGI  138 (168)
Q Consensus        80 ~v~SWi~f~iA~~lLl~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aA~l~l~t~~  138 (168)
                      ...+|+.|+++..++..|-- |....-              --||.++.+-.+++.++.
T Consensus         2 ~~~~~~~f~i~~~~~~iGl~-~~~~~l--------------~~KGy~~~~~l~~l~s~~   45 (53)
T PF05360_consen    2 VGQSWISFGISIVLMLIGLW-NAPLDL--------------SEKGYYAMGLLFLLFSAF   45 (53)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-hCCCCH--------------HHHHHHHHHHHHHHHHHH
Confidence            46799999999999999986 664432              257888888777776643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00