Citrus Sinensis ID: 045735

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MERDILMVESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
cccccccccccccccHHHHHHHHHcccHHHHHHHccccccHHHHcccHHHHHHHHHccccccEEEEEEEccccccccEEEcEEccccccccccccccccccccccEEEEcEEEcEEEEEEcccEEEEEEcccccEEEcccccccccccccccccEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEccccccccccccccccEEEEccEEEEEEEEccccEEEEEEEccccEEEEEccccccccccccEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccEEEEEEEcccEEEEEEccEEEEEEccccEEEEEEEEccEEEEEEEEEcccccccccEEEccccccccccccc
ccccccHccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEccccccEEEEccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccccEEEcccccccccccccEEEEEEEEEEccccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEEccEEEEEEEEccccccccEEEEEEccEEEEEccccEEEEEcccccEEEEEEEcccccEEEEEcccEEEEcccccccccccEEEEEEccc
MERDILMVesnadlpaDAIIEMLLRLPVKSLIRYRSVCKSWyiltksprfihkhqrkdhntrLLVYCTfedendrnlemSYFTFFLDEKLIDlstkrldnppimpvgfvgpyeGIFCLMNGNKYISLWNLATQELRrlpkcraslpphttihnssagfgldivsnDYKLVLILTLLDTKIDFYYDFSHIAVYNlstdswrgfrgfklgrdyvcgridstywnGVCYWLAREEGENHVIISFDLSDEVIQEiespctpelthgplglydnslsLIALDEIKKCYQLWVLKercwikqftigpfieaynplglwkngeiflessdgqlllydpnaqEMRDLGLRGLWFYVHCFRESLLSIKREGkllggfdipwhilgve
merdilmvesnadlpadAIIEMLLRLPVKSLIRYRSVCKSWYILtksprfihkhqrkdhntrLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYnlstdswrgfRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREgkllggfdipwhilgve
MERDILMVESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
***********ADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILG**
****************DAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
MERDILMVESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
*****L*VESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
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MERDILMVESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGENHVIISFDLSDEVIQEIESPCTPELTHGPLGLYDNSLSLIALDEIKKCYQLWVLKERCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLRGLWFYVHCFRESLLSIKREGKLLGGFDIPWHILGVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.873 0.772 0.261 2e-18
Q9LPW2416 Putative F-box/kelch-repe no no 0.756 0.687 0.268 4e-14
Q9SFC7417 F-box protein At3g07870 O no no 0.862 0.781 0.252 2e-13
Q9LU24360 Putative F-box protein At no no 0.648 0.680 0.250 5e-12
Q9SS35389 Putative F-box protein At no no 0.801 0.778 0.248 9e-12
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.809 0.740 0.234 3e-11
O49421411 F-box protein At4g19940 O no no 0.846 0.778 0.238 4e-11
Q9C9Y4369 F-box protein At3g08750 O no no 0.634 0.650 0.263 5e-11
Q9CAE7370 Putative F-box protein At no no 0.621 0.635 0.267 6e-11
Q9LUP7381 Putative F-box protein At no no 0.568 0.564 0.260 1e-10
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 169/398 (42%), Gaps = 68/398 (17%)

Query: 14  LPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKH-------------QRK--- 57
           LP + I E+LLRLP KS+ R+R V K +  L+  P F   H              RK   
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 58  -DHNTRLLVYCTFED------ENDRNLEMSYFTFFLDEKLIDLSTKRL-DNPPIMP---- 105
             HN   L + +  D        + N  +        E + +     L D+  +M     
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNA 155

Query: 106 -------VGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPKC-RASLPPHTTIHNSSAG 157
                  V  VG   G+ C+  G   + L+N  T + +RLP+  R     +   +  + G
Sbjct: 156 KSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYG 215

Query: 158 FGLDIVSNDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRID 217
           FG D +++DYKLV ++   +  +D        +VY+L  DSWR  R   L  ++  G   
Sbjct: 216 FGFDGLTDDYKLVKLVATSEDILD-------ASVYSLKADSWR--RICNLNYEHNDGSYT 266

Query: 218 S-TYWNGVCYWLAREEGENH-VIISFDLSDEVIQEIESP-----CTPELTHGPLGLYDNS 270
           S  ++NG  +W+  E   N  V+++FD+  E  +E+  P     C+   ++  +G  +  
Sbjct: 267 SGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGR 326

Query: 271 LSLIALDEIKKCY----QLWVLKERCWIKQFT---IGPFIEAYNPLGLWKNGEIFLESSD 323
           L +     +  CY     +WV+ E    K ++   I     +  PL   KN E  L   D
Sbjct: 327 LCV-----VNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVLLELD 381

Query: 324 GQLLLYDPNAQEMRDLGLRGL----WFYVHCFRESLLS 357
           G L+LY+       +LG+ G+     F  + + ESL+S
Sbjct: 382 GDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLIS 419

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9C9Y4|FB136_ARATH F-box protein At3g08750 OS=Arabidopsis thaliana GN=At3g08750 PE=2 SV=1 Back     alignment and function description
>sp|Q9CAE7|FB138_ARATH Putative F-box protein At3g10430 OS=Arabidopsis thaliana GN=At3g10430 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUP7|FB154_ARATH Putative F-box protein At3g17500 OS=Arabidopsis thaliana GN=At3g17500 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
224119696367 predicted protein [Populus trichocarpa] 0.891 0.918 0.369 8e-48
224133722443 predicted protein [Populus trichocarpa] 0.917 0.783 0.320 1e-37
224117590441 f-box family protein [Populus trichocarp 0.854 0.732 0.340 2e-36
38229883374 S locus F-box (SLF)-S4D protein [Antirrh 0.883 0.893 0.299 3e-29
296090345423 unnamed protein product [Vitis vinifera] 0.875 0.782 0.307 7e-29
45934825389 S1-locus linked F-box protein [Petunia i 0.912 0.886 0.305 2e-28
252968180389 Sv-SLF protein [Petunia x hybrida] gi|28 0.880 0.856 0.309 2e-28
148923046392 class S F-box protein [Nicotiana alata] 0.912 0.880 0.302 2e-28
148923040388 class S F-box protein [Nicotiana alata] 0.886 0.863 0.307 3e-28
148923036382 class S F-box protein [Nicotiana alata] 0.899 0.890 0.281 4e-28
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 203/368 (55%), Gaps = 31/368 (8%)

Query: 6   LMVESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIHKHQRKDHNTRLLV 65
           +  E+   LP D IIE+L  LPVK+L++++ VCKSWY +  S  FI  H    +N     
Sbjct: 1   MATENGCLLPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSG 60

Query: 66  YCTFEDENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYI 125
           +        + LE+     F DE L DLS + LD PPI      GP  GIF + + +   
Sbjct: 61  HLLAHFVCPQLLEL-----FQDESLTDLSHQGLD-PPIRG-RLCGPCNGIFYVDSEDSSG 113

Query: 126 S-LWNLATQELRRLP---KCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKID 181
           S LWN AT+E + LP   + ++SLP +   +  S GFG D V+NDYK+V+I        +
Sbjct: 114 SGLWNPATKEFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRE--SYTRE 168

Query: 182 FY---YDFSHIAVYNLSTDSWRGF----RGFKLGRDYVCGRIDSTYWNGVCYWLAREEGE 234
           +Y   +  S + VY L TDSWR +    +G+ L  +Y    +D     GV YW A     
Sbjct: 169 YYLEKFPSSLVIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVD-----GVYYWQAGHGVH 223

Query: 235 NHVIISFDLSDEVIQEIESPCTPELTHGP-LGLYDNSLSLIALDEIKKCYQLWVLKERCW 293
            +VI+SF+++ +  QEI+ P   +  +   L LY +S++   +  ++K   +WVL E CW
Sbjct: 224 MNVILSFNMATDAFQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCW 283

Query: 294 IKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNAQEMRDLGLR--GLWFYVHCF 351
           I+QF   P +E  NP+  WKNG + L+S + QL+LYD N QE++DL  +  G+ + +  +
Sbjct: 284 IRQFKSRPLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVY 343

Query: 352 RESLLSIK 359
           RESL+SIK
Sbjct: 344 RESLVSIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38229883|emb|CAD56660.1| S locus F-box (SLF)-S4D protein [Antirrhinum hispanicum] Back     alignment and taxonomy information
>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|45934825|gb|AAS79484.1| S1-locus linked F-box protein [Petunia integrifolia subsp. inflata] Back     alignment and taxonomy information
>gi|252968180|emb|CAZ68198.1| Sv-SLF protein [Petunia x hybrida] gi|289919126|gb|ADD21615.1| S-locus F-box protein [Petunia x hybrida] gi|311334659|dbj|BAJ24849.1| S-locus linked F-box protein type-1 [Petunia x hybrida] Back     alignment and taxonomy information
>gi|148923046|gb|ABR18787.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|148923040|gb|ABR18784.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|148923036|gb|ABR18782.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.637 0.564 0.283 1.1e-20
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.761 0.692 0.273 2.2e-15
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.751 0.681 0.267 1.5e-14
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.642 0.656 0.284 4.4e-13
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.558 0.579 0.252 6.6e-13
TAIR|locus:2076309389 AT3G10240 "AT3G10240" [Arabido 0.825 0.802 0.263 1.3e-11
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.608 0.589 0.271 4.7e-11
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.859 0.905 0.242 1.4e-10
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.722 0.664 0.241 1.4e-10
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.722 0.661 0.252 1.5e-10
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 219 (82.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 76/268 (28%), Positives = 123/268 (45%)

Query:   106 VGFVGPYEGIFCLMNGNKYISLWNLATQELRRLPK-CRASLPPHTTIHNSSAGFGLDIVS 164
             V  VG   G+ C+  G   + L+N  T + +RLP+  R     +   +  + GFG D ++
Sbjct:   163 VEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLT 222

Query:   165 NDYKLVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDS-TYWNG 223
             +DYKLV ++   +  +D        +VY+L  DSWR  R   L  ++  G   S  ++NG
Sbjct:   223 DDYKLVKLVATSEDILD-------ASVYSLKADSWR--RICNLNYEHNDGSYTSGVHFNG 273

Query:   224 VCYWLAREEGENH-VIISFDLSDEVIQEIESPCTPE-LTHGPLGLYDNSLSLIALDEIKK 281
               +W+  E   N  V+++FD+  E  +E+  P   E  +H        SL+   L  +  
Sbjct:   274 AIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNG-RLCVVNS 332

Query:   282 CYQ----LWVLKE----RCWIKQFTIGPFIEAYNPLGLWKNGEIFLESSDGQLLLYDPNA 333
             CY     +WV+ E    + W  +  I     +  PL   KN E  L   DG L+LY+   
Sbjct:   333 CYDVHDDIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFET 391

Query:   334 QEMRDLGLRGL----WFYVHCFRESLLS 357
                 +LG+ G+     F  + + ESL+S
Sbjct:   392 NASSNLGICGVKLSDGFEANTYVESLIS 419
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-15
pfam0064648 pfam00646, F-box, F-box domain 1e-04
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 4e-04
pfam1293747 pfam12937, F-box-like, F-box-like 0.001
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 28/240 (11%)

Query: 109 VGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYK 168
           V P +G+ C   G + + +WN +T + R LP         +   + +   G D +   YK
Sbjct: 1   VVPCDGLICFSYGKRLV-VWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYK 56

Query: 169 LVLILTLLDTKIDFYYDFSHIAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWL 228
           ++       +      + S   VY L ++SWR           +  R      NGV Y+L
Sbjct: 57  VLCF-----SDRSGNRNQSEHQVYTLGSNSWRTIE-CSPPHHPLKSR--GVCINGVLYYL 108

Query: 229 AREEGENH--VIISFDLSDEVIQE-IESPCTPELTHGPLGL--YDNSLSLIALDEIKKCY 283
           A     N    I+SFD+S E  +E I  PC    +   L L  Y   L+++   +    +
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF 168

Query: 284 QLWVLK---ERCWIKQFTIGP-----FIEAYNPLGLWKNGEIFLESSDGQ---LLLYDPN 332
            LWVL    ++ W K FT+        ++     G    GEI L   D     +  Y+  
Sbjct: 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.65
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.61
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.41
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.93
PHA02713557 hypothetical protein; Provisional 98.87
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.78
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.7
PHA02790480 Kelch-like protein; Provisional 98.69
PHA03098534 kelch-like protein; Provisional 98.66
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.62
PLN02153341 epithiospecifier protein 98.59
PHA02713557 hypothetical protein; Provisional 98.59
PLN02193470 nitrile-specifier protein 98.51
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.44
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.42
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.29
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.14
PLN02193470 nitrile-specifier protein 98.07
PHA03098534 kelch-like protein; Provisional 98.04
PLN02153341 epithiospecifier protein 98.02
PHA02790480 Kelch-like protein; Provisional 97.85
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.78
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.75
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.71
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.55
KOG4693392 consensus Uncharacterized conserved protein, conta 97.34
KOG1230 521 consensus Protein containing repeated kelch motifs 96.94
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.09
KOG2997366 consensus F-box protein FBX9 [General function pre 96.06
KOG4693392 consensus Uncharacterized conserved protein, conta 96.05
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 95.67
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 94.63
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.41
smart00284255 OLF Olfactomedin-like domains. 93.41
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 93.12
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 93.08
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.9
KOG1230 521 consensus Protein containing repeated kelch motifs 92.24
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 92.2
PF1396450 Kelch_6: Kelch motif 92.15
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 90.48
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 89.73
PF1396450 Kelch_6: Kelch motif 88.8
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 88.14
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 87.45
KOG0310 487 consensus Conserved WD40 repeat-containing protein 86.68
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 86.26
KOG4341483 consensus F-box protein containing LRR [General fu 86.15
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 85.84
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 83.26
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 81.21
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 80.95
COG3055381 Uncharacterized protein conserved in bacteria [Fun 80.71
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 80.65
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=2.9e-34  Score=254.75  Aligned_cols=214  Identities=26%  Similarity=0.417  Sum_probs=162.5

Q ss_pred             eecccceEEEEeCCceEEEEeccccceecCCCCcCCCCCCcccccceeEEeecCCCCCEEEEEEEEEeecCcCCccccee
Q 045735          109 VGPYEGIFCLMNGNKYISLWNLATQELRRLPKCRASLPPHTTIHNSSAGFGLDIVSNDYKLVLILTLLDTKIDFYYDFSH  188 (378)
Q Consensus       109 ~~s~~GLll~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  188 (378)
                      ++|||||||+.....+ +||||+||+++.||+++....   .......+||||+.+++||||++......     .....
T Consensus         1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~---~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS---NKESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSE   71 (230)
T ss_pred             CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc---ccccceEEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence            4799999999887777 999999999999997654211   11122689999999999999999653211     13578


Q ss_pred             EEEEEcCCCCcccccCCCCCCCccccCCCceEECceEEEEeeecCCc--cEEEEEECCCceee-eeCCCCCCCC--Cccc
Q 045735          189 IAVYNLSTDSWRGFRGFKLGRDYVCGRIDSTYWNGVCYWLAREEGEN--HVIISFDLSDEVIQ-EIESPCTPEL--THGP  263 (378)
Q Consensus       189 ~~vyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~--~~il~fD~~~e~~~-~i~~P~~~~~--~~~~  263 (378)
                      ++||++++++||.++..+   +.......+|++||++||+.......  ..|++||+++|+|+ .+++|.....  ....
T Consensus        72 ~~Vys~~~~~Wr~~~~~~---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSP---PHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEEEeCCCCccccccCC---CCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            999999999999998422   21111225999999999999765422  37999999999999 5999976532  1367


Q ss_pred             EEEECCeEEEEEecCCCCEEEEEEEcC---CeeEEEEEEcC--CCcc---eeceEEEECCeEEEEeeC--CE-EEEEeCC
Q 045735          264 LGLYDNSLSLIALDEIKKCYQLWVLKE---RCWIKQFTIGP--FIEA---YNPLGLWKNGEIFLESSD--GQ-LLLYDPN  332 (378)
Q Consensus       264 l~~~~g~L~~~~~~~~~~~~~IW~L~~---~~W~~~~~i~~--~~~~---~~~~~~~~~g~ill~~~~--~~-~~~yd~~  332 (378)
                      |++++|+||++........++||+|++   .+|+++++|+.  ...+   ..|+++..+|+|++....  +. +++||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            999999999987643345699999997   67999999983  2222   347888889999998653  34 9999998


Q ss_pred             CC
Q 045735          333 AQ  334 (378)
Q Consensus       333 t~  334 (378)
                      |+
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
 Score = 40.7 bits (94), Expect = 5e-04
 Identities = 42/239 (17%), Positives = 68/239 (28%), Gaps = 35/239 (14%)

Query: 12  ADLPADAIIEMLLRLPVKSLIRY-RSVCKSWYILTKSPRFIHKHQRKDHNTRLLVYCTFE 70
           A+LP   ++ +L  LP   L++  R VC  W  L           +++            
Sbjct: 52  AELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVP----EGSA 107

Query: 71  DENDRNLEMSYFTFFLDEKLIDLSTKRLDNPPIMPVGFVGPYEGIFCLMNGNKYISLWNL 130
           DE   + +  YF       L+       D      V   G     + +        +   
Sbjct: 108 DEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGD---GWKVEELPGDNGVEFT 164

Query: 131 ATQELRR-----LPKCRASLPPHTTIHNSSA----GFGLDIVSNDY---------KLVLI 172
               +++        CR +                     IV  D+            L 
Sbjct: 165 QDDSVKKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELT 224

Query: 173 LTLLDTKIDFYYDFSHIAVYNLSTDSWRG----FRGFKLGRDYVC----GRIDSTYWNG 223
           + LL    D   +F+   V      SW      F  +  G  +V     G+ DS YW G
Sbjct: 225 VRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQ-DSVYWKG 282
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.12
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.08
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.06
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.05
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.04
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.99
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.98
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.94
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.84
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.81
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.8
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.79
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.78
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.69
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.63
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.61
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.61
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.49
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.42
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.4
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.01
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.68
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.6
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.5
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.43
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.11
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.43
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 95.05
3jrp_A379 Fusion protein of protein transport protein SEC13 93.58
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 93.21
3jro_A 753 Fusion protein of protein transport protein SEC13 92.08
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 89.31
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 88.75
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 88.21
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.41
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 85.84
2qc5_A 300 Streptogramin B lactonase; beta propeller, lyase; 85.78
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 85.15
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.96
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 83.99
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 83.68
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 83.49
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 83.46
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 82.79
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 81.94
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 81.44
3jrp_A 379 Fusion protein of protein transport protein SEC13 81.04
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 80.61
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
Probab=99.12  E-value=2.1e-11  Score=80.50  Aligned_cols=45  Identities=24%  Similarity=0.487  Sum_probs=39.4

Q ss_pred             cccCCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHHHH
Q 045735            8 VESNADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRFIH   52 (378)
Q Consensus         8 ~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F~~   52 (378)
                      ...+..||+|++.+||++||++++.++++|||+|+.++.++.|.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            344889999999999999999999999999999999999988744
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 3e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 3e-04
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 0.001
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 13 DLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRF 50
           LP + ++ +   L +  L++   VCK WY L      
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.65
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.44
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.3
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.24
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.21
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.39
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.1
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 91.72
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 82.18
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 81.8
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.1e-13  Score=80.53  Aligned_cols=40  Identities=25%  Similarity=0.578  Sum_probs=37.6

Q ss_pred             CCCCcHHHHHHHHhcCCccccchhhccccchhhhhCCHHH
Q 045735           11 NADLPADAIIEMLLRLPVKSLIRYRSVCKSWYILTKSPRF   50 (378)
Q Consensus        11 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~p~F   50 (378)
                      |+.||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure