Citrus Sinensis ID: 045736

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MNGSITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Secondary Structure (PSIPRED)
cccccccccEEccccccccccHHHHHHHHHHHHHEHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHEHEHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mngsitpsfdipaasrqinlhqpyhcsyrshlrpcfhVYSKILhrktcwnndasenwnqcnnsnesVWWLIPQYALWGVFEAFAMgaledghrpcvqvfraeqfdgehqEECKLKISffnwswrittppsiavEEEAAFTMVGLqeffydhvpTEIRSLGLSLYLSTLGVGSILSSFIISAVEkatggdgrdswfantlnkghldif
Flexible Loop (DISEMBL)
mngsitpsfdipaASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKatggdgrdswfantlnkghldif
Low Complexity Region (SEG)
MNGSITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRslglslylstlgvgsILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Disordered region (IsUnstruct)
***************RQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTL********
Disordered Region (DISOPRED)
MNGSITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFD*******KLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Disordered Region (DISEMBL)
MNGSITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Disordered Region (DISPRO)
****ITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNGSITPSFDIPAASRQINLHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q0WP01	557	Probable peptide/nitrate	yes	no	0.328	0.122	0.666	6e-21
Q9C7U1	555	Probable peptide/nitrate	no	no	0.381	0.142	0.55	2e-19
Q9SK96	564	Probable peptide/nitrate	no	no	0.338	0.124	0.557	5e-17
Q8RX67	538	Probable peptide/nitrate	no	no	0.333	0.128	0.579	2e-16
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.309	0.114	0.617	3e-16
Q9SK99	565	Probable peptide/nitrate	no	no	0.318	0.116	0.594	4e-16
Q8VZE2	557	Probable peptide/nitrate	no	no	0.454	0.168	0.525	5e-16
Q9M1I2	555	Probable peptide/nitrate	no	no	0.381	0.142	0.425	2e-12
Q9SRI2	563	Putative peptide/nitrate	no	no	0.376	0.138	0.430	8e-12
P0CI03	575	Putative peptide/nitrate	no	no	0.381	0.137	0.425	1e-11

>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1

 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
           F MVGLQEFFYD VP E+RS+GL+LYLS  G+G+ LSSF+IS +EKAT   G+ SWFAN 
Sbjct: 459 FAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANN 518

Query: 199 LNKGHLDIF 207
           LN+ HLD F
Sbjct: 519 LNQAHLDYF 527

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 58/80 (72%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  I       FTMVGLQEFFY  VP ++RS+GL+LYLS +G+G+ LSSF++S +E+AT 
Sbjct: 448 PQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVIEEATS 507

Query: 188 GDGRDSWFANTLNKGHLDIF 207
             G+ SWF+N LN+ HLD F
Sbjct: 508 QSGQVSWFSNNLNQAHLDYF 527

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
            F++VG QEFFYD VPTE+RS+GL+L LS +G+ S LS F+I+ +  ATG +G DSWF  
Sbjct: 465 VFSLVGTQEFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNT 524

Query: 198 TLNKGHLDIF 207
            LN+ H+D F
Sbjct: 525 NLNRAHVDYF 534

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 52/69 (75%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
           FTMVGLQEFFY  VP+E+RS+G++L LS  G G+ LSSF+IS ++K T   G+ SWF N 
Sbjct: 440 FTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMISVIDKITNQYGQRSWFDND 499

Query: 199 LNKGHLDIF 207
           L++ HLD F
Sbjct: 500 LDQAHLDYF 508

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 55/68 (80%)

Query: 140 TMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANTL 199
           T+VG+QEFFY  VPTE+RSLGL++YLS +GVGS+LSS +I  ++ ATGGD  +SWF + L
Sbjct: 464 TLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNL 523

Query: 200 NKGHLDIF 207
           N+ HLD F
Sbjct: 524 NRAHLDYF 531

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 52/69 (75%), Gaps = 3/69 (4%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
           F+MVG QEFFYD VPTE+RS+GLSL LS +G+ S LS F+IS ++ ATG DG   WF + 
Sbjct: 470 FSMVGTQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSN 526

Query: 199 LNKGHLDIF 207
           LN+ H+D F
Sbjct: 527 LNRAHVDYF 535

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 68/99 (68%), Gaps = 5/99 (5%)

Query: 109 QEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTL 168
           Q E  L +S   W W I  P  + +     +T+VG+QEFFY  VPTE+RS+GL+LYLS L
Sbjct: 434 QPEATLPMSI--W-WLI--PQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSAL 488

Query: 169 GVGSILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF 207
           GVGS+LSS +IS ++ ATGGD  +SWF + LN+ HLD F
Sbjct: 489 GVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYF 527

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  I V     FT+VG+QE FYD +P  +RS+G ++++S +GVGS +S+ IIS V+  + 
Sbjct: 439 PQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISK 498

Query: 188 GDGRDSWFANTLNKGHLDIF 207
             G + W  N LN+ HLD +
Sbjct: 499 SHGEE-WLVNNLNRAHLDYY 517

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRI2|PTR31_ARATH Putative peptide/nitrate transporter At3g01350 OS=Arabidopsis thaliana GN=At3g01350 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  I +     FT+VG+QEFFY  VP  +R++G +LY S  GVGS +S+ +IS VE  + 
Sbjct: 446 PQYILLGISDIFTVVGMQEFFYSEVPVRMRTMGFALYTSVFGVGSFVSAALISIVEAYSS 505

Query: 188 GDG-RDSWFANTLNKGHLD 205
             G R +WFA+ +++  LD
Sbjct: 506 STGDRQNWFADDMSEARLD 524

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  + +    AFT+VGLQE+FY  VP  +RSLG++ YLS +G  S L++ +I+AV+    
Sbjct: 462 PQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAE 521

Query: 188 GDGRDSWFANTLNKGHLDIF 207
                SWF   LN   LD F
Sbjct: 522 NFSGKSWFGKDLNSSRLDRF 541

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224135663	1099	predicted protein [Populus trichocarpa]	0.294	0.055	0.757	2e-23
224135651	557	proton-dependent oligopeptide transporte	0.391	0.145	0.654	1e-22
147821381	532	hypothetical protein VITISV_031692 [Viti	0.386	0.150	0.65	2e-22
359493464	540	PREDICTED: LOW QUALITY PROTEIN: probable	0.338	0.129	0.714	2e-22
296089512	1046	unnamed protein product [Vitis vinifera]	0.328	0.065	0.724	2e-22
147836333	584	hypothetical protein VITISV_011767 [Viti	0.376	0.133	0.637	7e-22
449488729	1074	PREDICTED: U-box domain-containing prote	0.333	0.064	0.710	9e-22
449451992	1122	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.289	0.053	0.714	1e-21
356543142	560	PREDICTED: probable peptide/nitrate tran	0.294	0.108	0.685	2e-21
356543144	543	PREDICTED: probable peptide/nitrate tran	0.338	0.128	0.685	2e-21

>gi|224135663|ref|XP_002327274.1| predicted protein [Populus trichocarpa] gi|222835644|gb|EEE74079.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 61/70 (87%)

Query: 138  AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
            AFTMVGLQEFFYD VP+++RS+GLSLYLS  GVGS LSSF+IS +EKATGG+GR SWFAN
Sbjct: 1000 AFTMVGLQEFFYDQVPSDLRSVGLSLYLSIFGVGSFLSSFLISIIEKATGGNGRYSWFAN 1059

Query: 198  TLNKGHLDIF 207
             LN+ HLD F
Sbjct: 1060 NLNRAHLDYF 1069

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135651|ref|XP_002327271.1| proton-dependent oligopeptide transporter [Populus trichocarpa] gi|222835641|gb|EEE74076.1| proton-dependent oligopeptide transporter [Populus trichocarpa]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 60/81 (74%)

Query: 127 TPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKAT 186
            P  I       F MVGLQEFFYD VP+E+RS+GLSLYLS  GVGS LSSF+IS +EKAT
Sbjct: 448 VPQYIVYGAADVFAMVGLQEFFYDQVPSELRSVGLSLYLSIFGVGSFLSSFLISGIEKAT 507

Query: 187 GGDGRDSWFANTLNKGHLDIF 207
           GGDG  SWFA+ LN+ HLD F
Sbjct: 508 GGDGHGSWFADNLNRAHLDYF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821381|emb|CAN63511.1| hypothetical protein VITISV_031692 [Vitis vinifera]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 60/80 (75%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  I       FTMVGLQEFFYD VP E+RS+GLSLYLS  GVGS LSS +I+ +EKATG
Sbjct: 423 PQYILFGIADVFTMVGLQEFFYDQVPNELRSVGLSLYLSIFGVGSFLSSLLIAVIEKATG 482

Query: 188 GDGRDSWFANTLNKGHLDIF 207
           GDG+DSWF + LN+ HLD F
Sbjct: 483 GDGQDSWFTDNLNRAHLDYF 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493464|ref|XP_003634603.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 58/70 (82%)

Query: 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
            FTMVGLQEFFYD VP E+RS+GLSLYLS  GVGS LSS +I+ +EKATGGDG+DSWF +
Sbjct: 441 VFTMVGLQEFFYDQVPNELRSVGLSLYLSIFGVGSFLSSLLIAVIEKATGGDGQDSWFTD 500

Query: 198 TLNKGHLDIF 207
            LN+ HLD F
Sbjct: 501 NLNRAHLDYF 510

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089512|emb|CBI39331.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 58/69 (84%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
           FTMVGLQEFFYD VP E+RS+GLSLYLS  GVGS LSS +I+ +EKATGGDG+DSWF + 
Sbjct: 368 FTMVGLQEFFYDQVPNELRSVGLSLYLSIFGVGSFLSSLLIAVIEKATGGDGQDSWFTDN 427

Query: 199 LNKGHLDIF 207
           LN+ HLD F
Sbjct: 428 LNRAHLDYF 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836333|emb|CAN75422.1| hypothetical protein VITISV_011767 [Vitis vinifera]

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 63/80 (78%)

Query: 128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATG 187
           P  I       FT+VGLQEFFYD VPTE+RS+G++LYLS LGVG+ LSSF+ISA+EKATG
Sbjct: 475 PQYILFGVSDVFTIVGLQEFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATG 534

Query: 188 GDGRDSWFANTLNKGHLDIF 207
           GDG+ SWF + LN+ HLD +
Sbjct: 535 GDGQHSWFNDNLNRAHLDXY 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488729|ref|XP_004158155.1| PREDICTED: U-box domain-containing protein 35-like [Cucumis sativus]

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 57/69 (82%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
           FTMVGLQEFFYD VP+ +RS+GLSLYLS  G+G+ LSSF+ISA+EK T GDG+ SWF N 
Sbjct: 201 FTMVGLQEFFYDQVPSGLRSIGLSLYLSIFGIGNFLSSFLISAIEKLTSGDGKQSWFDNN 260

Query: 199 LNKGHLDIF 207
           LNK HLD F
Sbjct: 261 LNKAHLDYF 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451992|ref|XP_004143744.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218147 [Cucumis sativus]

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 58/70 (82%)

Query: 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
           AFTMVGLQEFFYD VP+ +RS+GLSLYLS  G+G+ LSSF+ISA+EK T GDG+ SWF N
Sbjct: 464 AFTMVGLQEFFYDQVPSGLRSIGLSLYLSIFGIGNFLSSFLISAIEKLTSGDGKQSWFDN 523

Query: 198 TLNKGHLDIF 207
            LNK HLD F
Sbjct: 524 NLNKAHLDYF 533

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543142|ref|XP_003540022.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like isoform 1 [Glycine max]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
            FTMVGLQEFFYD VP E+RS+GL+LYLS  GVGS +S F+IS +EK +G DG+DSWFAN
Sbjct: 458 VFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFISGFLISVIEKLSGKDGQDSWFAN 517

Query: 198 TLNKGHLDIF 207
            LNK H+D F
Sbjct: 518 NLNKAHVDYF 527

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543144|ref|XP_003540023.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like isoform 2 [Glycine max]

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 57/70 (81%)

Query: 138 AFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFAN 197
            FTMVGLQEFFYD VP E+RS+GL+LYLS  GVGS +S F+IS +EK +G DG+DSWFAN
Sbjct: 441 VFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFISGFLISVIEKLSGKDGQDSWFAN 500

Query: 198 TLNKGHLDIF 207
            LNK H+D F
Sbjct: 501 NLNKAHVDYF 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	0.333	0.123	0.536	6.6e-26
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.328	0.121	0.455	6.5e-21
TAIR|locus:2030316	538	AT1G72130 [Arabidopsis thalian	0.444	0.171	0.410	8.9e-21
TAIR|locus:2009542	565	AT1G22570 [Arabidopsis thalian	0.318	0.116	0.463	3.7e-20
TAIR|locus:2009472	564	AT1G22550 [Arabidopsis thalian	0.333	0.122	0.449	1.5e-19
TAIR|locus:2206991	555	AT1G72140 [Arabidopsis thalian	0.400	0.149	0.435	2.7e-19
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.400	0.145	0.352	8.1e-16
TAIR|locus:2030326	557	AT1G72120 [Arabidopsis thalian	0.454	0.168	0.404	2.8e-13
TAIR|locus:2065568	575	AT2G37900 [Arabidopsis thalian	0.338	0.121	0.357	2.9e-13
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.381	0.142	0.337	6.5e-13

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
 Identities = 37/69 (53%), Positives = 42/69 (60%)

Query:   139 FTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATGGDGRDSWFANT 198
             F MVGLQEFFYD VP E+R                LSSF+IS +EKAT   G+ SWFAN 
Sbjct:   459 FAMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANN 518

Query:   199 LNKGHLDIF 207
             LN+ HLD F
Sbjct:   519 LNQAHLDYF 527

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
 Identities = 31/68 (45%), Positives = 41/68 (60%)

Query:   140 TMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATGGDGRDSWFANTL 199
             T+VG+QEFFY  VPTE+R               +LSS +I  ++ ATGGD  +SWF + L
Sbjct:   464 TLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNL 523

Query:   200 NKGHLDIF 207
             N+ HLD F
Sbjct:   524 NRAHLDYF 531

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 8.9e-21, Sum P(2) = 8.9e-21
 Identities = 39/95 (41%), Positives = 49/95 (51%)

Query:   113 KLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXX 172
             +L I    W W I  P  +       FTMVGLQEFFY  VP+E+R               
Sbjct:   417 ELSIPMSVW-WLI--PQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGN 473

Query:   173 ILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF 207
              LSSF+IS ++K T   G+ SWF N L++ HLD F
Sbjct:   474 YLSSFMISVIDKITNQYGQRSWFDNDLDQAHLDYF 508

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query:   139 FTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATGGDGRDSWFANT 198
             F+MVG QEFFYD VPTE+R                LS F+IS ++ ATG DG   WF + 
Sbjct:   470 FSMVGTQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG---WFNSN 526

Query:   199 LNKGHLDIF 207
             LN+ H+D F
Sbjct:   527 LNRAHVDYF 535

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 31/69 (44%), Positives = 40/69 (57%)

Query:   139 FTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATGGDGRDSWFANT 198
             F++VG QEFFYD VPTE+R                LS F+I+ +  ATG +G DSWF   
Sbjct:   466 FSLVGTQEFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDSWFNTN 525

Query:   199 LNKGHLDIF 207
             LN+ H+D F
Sbjct:   526 LNRAHVDYF 534

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 37/85 (43%), Positives = 46/85 (54%)

Query:   123 WRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAV 182
             W I  P  I       FTMVGLQEFFY  VP ++R                LSSF++S +
Sbjct:   445 WLI--PQYILFGVSDVFTMVGLQEFFYGEVPPQLRSMGLALYLSIIGIGNFLSSFMVSVI 502

Query:   183 EKATGGDGRDSWFANTLNKGHLDIF 207
             E+AT   G+ SWF+N LN+ HLD F
Sbjct:   503 EEATSQSGQVSWFSNNLNQAHLDYF 527

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
 Identities = 30/85 (35%), Positives = 38/85 (44%)

Query:   123 WRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAV 182
             W++  P    V     FT +G  EFFYD  P  +R                LS+F+++ V
Sbjct:   456 WQV--PQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLV 513

Query:   183 EKATGGDGRDSWFANTLNKGHLDIF 207
              K T   GR  W A  LN GHLD F
Sbjct:   514 TKVTRSGGRPGWIAKNLNNGHLDYF 538

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 40/99 (40%), Positives = 54/99 (54%)

Query:   109 QEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRXXXXXXXXXXX 168
             Q E  L +S   W W I  P  + +     +T+VG+QEFFY  VPTE+R           
Sbjct:   434 QPEATLPMSI--W-WLI--PQYLLLGLADVYTLVGMQEFFYSQVPTELRSIGLALYLSAL 488

Query:   169 XXXXILSSFIISAVEKATGGDGRDSWFANTLNKGHLDIF 207
                 +LSS +IS ++ ATGGD  +SWF + LN+ HLD F
Sbjct:   489 GVGSLLSSLLISLIDLATGGDAGNSWFNSNLNRAHLDYF 527

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2065568 AT2G37900 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
 Identities = 25/70 (35%), Positives = 33/70 (47%)

Query:   138 AFTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATGGDGRDSWFAN 197
             AFT+VGLQE+FY  VP  +R                L++ +I+AV+         SWF  
Sbjct:   472 AFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAENFSGKSWFGK 531

Query:   198 TLNKGHLDIF 207
              LN   LD F
Sbjct:   532 DLNSSRLDRF 541

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query:   128 PPSIAVEEEAAFTMVGLQEFFYDHVPTEIRXXXXXXXXXXXXXXXILSSFIISAVEKATG 187
             P  I V     FT+VG+QE FYD +P  +R                +S+ IIS V+  + 
Sbjct:   439 PQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVGVGSFVSTGIISTVQTISK 498

Query:   188 GDGRDSWFANTLNKGHLDIF 207
               G + W  N LN+ HLD +
Sbjct:   499 SHGEE-WLVNNLNRAHLDYY 517

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.24
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.15
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.06
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.01
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.85
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.82
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.78
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.63
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.17
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.03
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	91.62

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3.6e-36  Score=283.81  Aligned_cols=168  Identities=29%  Similarity=0.417  Sum_probs=145.0

Q ss_pred             CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      |||+++++|+||||+++++..   ++++|+|||+++|   ++||.++++.+.+.+      ||+             ++|
T Consensus       367 mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP---~~~~~t~~~~~~t~l------qri-------------g~G  424 (571)
T KOG1237|consen  367 MDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP---FARKLTGNPFGITPL------QRI-------------GIG  424 (571)
T ss_pred             cCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh---hhhhhcCCCCCCChh------hee-------------ecc
Confidence            899999669999999999964   4999999999999   999999999877766      766             888


Q ss_pred             HHHHHHHHHHhc-C-ccc-ccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccc
Q 045736           78 GVFEAFAMGALE-D-GHR-PCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPT  154 (207)
Q Consensus        78 ~~~~~l~mva~g-g-~~r-~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~  154 (207)
                      +++..++|++.| . ..| ..+..          ......++|++   |  |+|||+++|++|+|..+|++||+|+|+|+
T Consensus       425 ~~~si~sm~~aa~vE~krl~~~~~----------~~~~~~~mSi~---W--~iPQyvLig~~Evf~~vg~lEFfY~qaP~  489 (571)
T KOG1237|consen  425 LVLSILSMAVAGIVEAKRLKTAVS----------LLVETNPMSIL---W--QIPQYVLLGAGEVFTSVGGLEFFYSQAPE  489 (571)
T ss_pred             chHHHHHHHHHHHHHHHHhhhhhh----------ccCCCCCeeHH---H--HHHHHHHHHHHHHHHhhhhHHHhHhhCCH
Confidence            889999999888 3 222 22211          11123456665   8  99999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhcCCCCCCCCCC-CCCCCCcCCCC
Q 045736          155 EIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFA-NTLNKGHLDIF  207 (207)
Q Consensus       155 ~mks~~~al~~~~~~~g~~l~~~lv~~v~~~t~~~~~~~W~~-~~lN~g~Ld~f  207 (207)
                      +|||+++|+|+++.++||+++++++.++++.|++  ..+|++ +|||++|||||
T Consensus       490 sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~F  541 (571)
T KOG1237|consen  490 SMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYF  541 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHH
Confidence            9999999999999999999999999999999976  347999 99999999997

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.24  E-value=3.1e-12  Score=118.59  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=102.1

Q ss_pred             CCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHhH
Q 045736            2 NGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWG   78 (207)
Q Consensus         2 ~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~~   78 (207)
                      ||++. ||++|++.+|+++   ++++.|+++++.+|   +.++...|+.                 ..      ++++++
T Consensus       316 ~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~---l~~~~~~ps~-----------------~~------KFalGl  368 (498)
T COG3104         316 NRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTK---LGRGNKQPST-----------------PI------KFALGL  368 (498)
T ss_pred             ccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhH---hhcCCCCCCc-----------------ch------HHHHHH
Confidence            56655 4999999988774   67999999999999   8776522221                 11      678887


Q ss_pred             HHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736           79 VFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR  157 (207)
Q Consensus        79 ~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk  157 (207)
                      ...++..+.+. ++++..          +.        ....|.+|  ++|.|++++++|.|.++.++|+.++.+|++|+
T Consensus       369 ~l~g~~fl~l~~~~~~~~----------~~--------~~~~s~~~--lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~  428 (498)
T COG3104         369 ILAGLGFLILLLAGIWFG----------GP--------SGLVSVWW--LVLSYVLQSFGELFISPVGLSMVTKLAPPALK  428 (498)
T ss_pred             HHHHHHHHHHHHHHHhhc----------CC--------CCCcCHHH--HHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence            78888777655 322211          10        11124457  99999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHH
Q 045736          158 SLGLSLYLSTLGVGSILSSFIIS  180 (207)
Q Consensus       158 s~~~al~~~~~~~g~~l~~~lv~  180 (207)
                      |..+|+|+++.+.|+.++..+..
T Consensus       429 s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         429 SFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhceecc
Confidence            99999999999999999876555

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.15  E-value=1.2e-11  Score=110.41  Aligned_cols=126  Identities=17%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      ||+.+++.+++|++++|++.   +++++|++|++++|   ++|+..+    .+..      +             ++++|
T Consensus       241 ~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p---~~~~~~~----~~~~------~-------------k~~~G  294 (372)
T PF00854_consen  241 MDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYP---LLRRGIQ----PSPP------Q-------------KFGIG  294 (372)
T ss_dssp             TTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCC---TTTT----------H------H-------------HHHHH
T ss_pred             cccccccccccccchhhhHHHHHHHHHHHHHHHHHhH---Hhhhccc----chhh------h-------------hhhHH
Confidence            68889944999999999885   45999999999999   7772111    1111      2             66888


Q ss_pred             HHHHHHHHHHhc--CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccch
Q 045736           78 GVFEAFAMGALE--DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTE  155 (207)
Q Consensus        78 ~~~~~l~mva~g--g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~  155 (207)
                      .++.+++++..+  +.+|++..    ++-+..++ ....+++.   +|  ++|||++.+++|.    +.+||+|+++|++
T Consensus       295 ~~~~~~~~~~~~~v~~~r~~~~----~~~~~~~~-~~~~~~~~---~~--~~~e~~l~~~g~~----~~~~~a~~~~p~~  360 (372)
T PF00854_consen  295 MVFAILAMFVAAIVEIRRLCYA----QPCGKVSP-WWQVPMYI---FW--LIPEYFLSGTGES----AAYEFAPSRAPSS  360 (372)
T ss_dssp             -HHHHHHHHTTTHHHH---HH--------TT--T-HHHHHHHH---HH--HHHHHTTTTHHHH----HHHHHTTTT-SSS
T ss_pred             HHHHHHHHHHHHHHHhhhhhcc----cccCCCCh-hhHHHHHH---HH--HHHHHHhhHHHHH----HHHHhhHHhhhHH
Confidence            778888887766  34444321    11010000 01111111   23  5555555555555    5667999999999


Q ss_pred             hhhHHHHHHHH
Q 045736          156 IRSLGLSLYLS  166 (207)
Q Consensus       156 mks~~~al~~~  166 (207)
                      |||+.++++.+
T Consensus       361 m~~~~~~~~~~  371 (372)
T PF00854_consen  361 MMGIWFALSAF  371 (372)
T ss_dssp             STHHHHHHH--
T ss_pred             HHHHHHHHhcc
Confidence            99999998765

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.06  E-value=2.1e-10  Score=106.24  Aligned_cols=135  Identities=9%  Similarity=-0.027  Sum_probs=99.5

Q ss_pred             CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      ||++++ +++||++.+++++   ++++.|+++++ ++   .++|..+++.           ...           |+++|
T Consensus       303 ~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~-~~---~l~~~~~~~~-----------~~~-----------k~~~G  355 (475)
T TIGR00924       303 MHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMI-WT---RLGRKGKDPT-----------TPL-----------KFTLG  355 (475)
T ss_pred             cccccc-ceEECHHHHHhhhHHHHHHHHHHHHHH-HH---HHHhCCCCCC-----------cHH-----------HHHHH
Confidence            688888 6999999988875   45888888864 34   3433212111           111           66888


Q ss_pred             HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736           78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI  156 (207)
Q Consensus        78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m  156 (207)
                      .++.++.++.++ .  +..     +++    +     .   ..|++|  ++++|++++++|.+..++..++.++++|+++
T Consensus       356 ~~l~~~~~~~~~~~--~~~-----~~~----~-----~---~~s~~~--~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~  414 (475)
T TIGR00924       356 MLFCGASFLTFAAS--IWF-----ADA----G-----G---LTSPWF--MVLIYLFQTLGELMISPLGLSWWTKIAPQRL  414 (475)
T ss_pred             HHHHHHHHHHHHHH--Hhh-----cCC----C-----C---ccCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence            778877776554 2  100     010    0     0   135667  8999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736          157 RSLGLSLYLSTLGVGSILSSFIISAVE  183 (207)
Q Consensus       157 ks~~~al~~~~~~~g~~l~~~lv~~v~  183 (207)
                      |+..++++.+..++|+++++.+.....
T Consensus       415 ~g~~~g~~~l~~~~g~~l~~~~~~~~~  441 (475)
T TIGR00924       415 MGQMLGMWFLAQAMGSLLGGYLATFGA  441 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988777553

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.01  E-value=2e-10  Score=110.79  Aligned_cols=62  Identities=21%  Similarity=0.424  Sum_probs=56.5

Q ss_pred             cceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHH
Q 045736          116 ISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFII  179 (207)
Q Consensus       116 ~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv  179 (207)
                      .+-.|++|  |+|||++++++|++..++++||+|+|+|++|||+++++|+++.++|+++..++.
T Consensus       560 ~~~~~~~w--q~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~  621 (654)
T TIGR00926       560 VNTVSILW--QIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIA  621 (654)
T ss_pred             CCceeHHH--HHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44467778  999999999999999999999999999999999999999999999999876543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.85  E-value=1.2e-09  Score=103.83  Aligned_cols=77  Identities=32%  Similarity=0.456  Sum_probs=62.6

Q ss_pred             hhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHhHHHHHHHHHHhc-Ccccccchhhhhhcccccchhhhhhcc
Q 045736           38 VYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALWGVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKI  116 (207)
Q Consensus        38 ~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~  116 (207)
                      .....++|++|....   ....|.+++..      |..++  |.+++++++| |++|+|+.++||||||+.++++++.+.
T Consensus       125 a~~~~l~p~~~~~~~---~~~~c~~~s~~------q~~~~--~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~  193 (571)
T KOG1237|consen  125 AMIPALLPFMCKFKP---GGNVCESPSKL------QLAVL--YGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIP  193 (571)
T ss_pred             HHhhhcCCccccCCC---CCCcccCcchH------HHHHH--HHHHHHheeccCCCCCcchhhcccccCccCcchhhCcc
Confidence            444456777761111   12367777777      88888  9999999999 999999999999999999999999999


Q ss_pred             ceeeeehhc
Q 045736          117 SFFNWSWRI  125 (207)
Q Consensus       117 s~Fnw~y~~  125 (207)
                      +||||||+.
T Consensus       194 ~fFnW~yf~  202 (571)
T KOG1237|consen  194 SFFNWFYFS  202 (571)
T ss_pred             cchhHHHHH
Confidence            999999977

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.82  E-value=5.8e-09  Score=97.20  Aligned_cols=136  Identities=10%  Similarity=0.027  Sum_probs=95.6

Q ss_pred             CCCCCCCCcccccccccch---hhhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQIN---LHQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~---~~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      +|+++. |+++||+.+|.+   .++++.|+.++ ++|   .++|...+++   ..      +             ++++|
T Consensus       300 ~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~-l~~---rl~~r~~~~~---~~------~-------------k~~~G  352 (489)
T PRK10207        300 VHHEIL-GFSINPVSFQALNPFWVVVASPILAG-IYT---HLGSKGKDLS---MP------M-------------KFTLG  352 (489)
T ss_pred             cccccc-ceEECHHHHHhHhHHHHHHHHHHHHH-HHH---HHhhCCCCCC---cH------H-------------HHHHH
Confidence            466666 699999999766   45588999875 667   6654332221   10      1             55777


Q ss_pred             HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736           78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI  156 (207)
Q Consensus        78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m  156 (207)
                      +++.++.++.+. .+..          +.+.+.     .   .+.+|  ++++|++.|++|.+..+.++++.++.+|++|
T Consensus       353 ~~l~~~~~~~~~~~~~~----------~~~~~~-----~---~s~~~--~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~  412 (489)
T PRK10207        353 MFLCSLGFLTAAAAGMW----------FADAQG-----L---TSPWF--IVLVYLFQSLGELFISALGLAMIAALVPQHL  412 (489)
T ss_pred             HHHHHHHHHHHHHHHHh----------hcCCCC-----c---cCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence            666666554322 1000          000000     0   13346  7899999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045736          157 RSLGLSLYLSTLGVGSILSSFIISAVE  183 (207)
Q Consensus       157 ks~~~al~~~~~~~g~~l~~~lv~~v~  183 (207)
                      +|.+++++.++.++|+.++..+.+...
T Consensus       413 ~g~~~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        413 MGFILGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999988776553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.78  E-value=7e-09  Score=96.69  Aligned_cols=132  Identities=11%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      +|+++. |+.+|++.+|.++.   +++.|+.+++ ++   ..++   +.+   ..      +             +++++
T Consensus       307 ~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~-~~---~l~~---r~~---~~------~-------------~~~~G  356 (500)
T PRK09584        307 VEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAI-YN---KMGD---RLP---MP------H-------------KFAIG  356 (500)
T ss_pred             cccccc-ceEECHHHHHHHhHHHHHHHHHHHHHH-HH---HhCc---CCC---cH------H-------------HHHHH
Confidence            466777 69999999888754   4778888763 22   2221   111   00      1             56777


Q ss_pred             HHHHHHHHHHhcCcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736           78 GVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR  157 (207)
Q Consensus        78 ~~~~~l~mva~gg~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk  157 (207)
                      .++.++.++.++         ++.+ +.+++        ...|++|  ++++|+++|++|.+..+.++++.++.+|+++|
T Consensus       357 ~~l~~l~f~~l~---------~~~~-~~~~~--------~~vs~~~--~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        357 MVLCSGAFLVLP---------LGAK-FANDA--------GIVSVNW--LIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHHHHHHHH---------HHHH-hcCCC--------CccCHHH--HHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            777777766543         1111 10000        1245567  89999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHh
Q 045736          158 SLGLSLYLSTLGVGSILSSFIISAV  182 (207)
Q Consensus       158 s~~~al~~~~~~~g~~l~~~lv~~v  182 (207)
                      +.++++|.++.++|+++++.+....
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~  441 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLM  441 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998776543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.63  E-value=4.5e-08  Score=91.76  Aligned_cols=136  Identities=10%  Similarity=-0.029  Sum_probs=94.6

Q ss_pred             CCCCCCCCcccccccccchh---hhhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINL---HQPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~---~l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      +||++. ||+||++++|+++   ++++.|++-.+..-   ..+|  ++.+               .++.      |++++
T Consensus       299 vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~---l~~~--~~~~---------------s~~~------Kfa~g  351 (493)
T PRK15462        299 VNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKE---SVAG--NRTV---------------RIWG------KFALG  351 (493)
T ss_pred             ccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHH---HhcC--CCCC---------------CcHH------HHHHH
Confidence            589999 7999999988875   44777776553322   2111  1111               1122      67888


Q ss_pred             HHHHHHHHHHhcCcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchhh
Q 045736           78 GVFEAFAMGALEDGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIR  157 (207)
Q Consensus        78 ~~~~~l~mva~gg~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mk  157 (207)
                      +++.++..+.+.         +++.+.++..      +   .|.+|  ++..|++++++|.+.++.++.+.-+.||++++
T Consensus       352 ~~~~g~~f~~l~---------~~~~~~~~~~------~---~s~~w--l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~  411 (493)
T PRK15462        352 LGLMSAGFCILT---------LSARWSAMYG------H---SSLPL--MVLGLAVMGFAELFIDPVAMSQITRIEIPGVT  411 (493)
T ss_pred             HHHHHHHHHHHH---------HHHhhcCCCC------C---cCHHH--HHHHHHHHHHHHHHHChHHHHHHHHhChHHHH
Confidence            888877765443         1111111110      1   24457  78899999999999999999999999999999


Q ss_pred             hHHHHHHHHhh-hhHHHHHHHHHHHhh
Q 045736          158 SLGLSLYLSTL-GVGSILSSFIISAVE  183 (207)
Q Consensus       158 s~~~al~~~~~-~~g~~l~~~lv~~v~  183 (207)
                      |..|++|.+.. ++|+.+++.+.....
T Consensus       412 g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        412 GVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999854 799999987666553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.17  E-value=1e-06  Score=78.73  Aligned_cols=81  Identities=25%  Similarity=0.384  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhc-CcccccchhhhhhcccccchhhhhhccceeeeehhcccchhhhhhhHHHHhhhhhheeeeccccchh
Q 045736           78 GVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRITTPPSIAVEEEAAFTMVGLQEFFYDHVPTEI  156 (207)
Q Consensus        78 ~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~m  156 (207)
                      .++.+|+++++| |+.|+|++++++|||++++   ..++.++|||||++     +.+|..-.....+.++          
T Consensus        35 ~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F~~fY~~-----in~G~~~~~~~~~~i~----------   96 (372)
T PF00854_consen   35 LFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFFNWFYWG-----INIGSLFSPTLVPYIQ----------   96 (372)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHHHHHHHH-----HHHHHHHHHHCCCHHH----------
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhHHHHHHH-----HhhhhHhhcccchhhc----------
Confidence            339999999999 9999999999999999775   35677999999965     4444333333334333          


Q ss_pred             hhHHHHHHHHhhhhHHHHHH
Q 045736          157 RSLGLSLYLSTLGVGSILSS  176 (207)
Q Consensus       157 ks~~~al~~~~~~~g~~l~~  176 (207)
                      +..+-...+...+++..++.
T Consensus        97 ~~~~~~~~f~i~~~~~~~~~  116 (372)
T PF00854_consen   97 QNYGWFLGFGIPAIGMLLAL  116 (372)
T ss_dssp             HCS-HHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHHHHHHHHH
Confidence            23444444555555555543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.03  E-value=0.0003  Score=68.33  Aligned_cols=63  Identities=19%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CCCCCCCCcccccccccchhh---hhHHhhhcceeccchhhhhhhhcCCCCCCCcCccccccccCCCcchhhhhhHHHHh
Q 045736            1 MNGSITPSFDIPAASRQINLH---QPYHCSYRSHLRPCFHVYSKILHRKTCWNNDASENWNQCNNSNESVWWLIPQYALW   77 (207)
Q Consensus         1 m~~~i~~~~~ip~asl~~~~~---l~~ip~~d~i~~P~~~~~~k~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~q~~i~   77 (207)
                      ||++++ ++++|++++|++..   ++++|++|+.++|   .++|...+.+   .+      +             ++++|
T Consensus       271 m~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp---~l~~~~~~ls---~l------~-------------k~~iG  324 (654)
T TIGR00926       271 MDGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYP---AIAKCGTRFT---SL------R-------------KMAVG  324 (654)
T ss_pred             hcCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHH---HHHhcCCCCC---hH------H-------------HHHHH
Confidence            788888 69999999998864   4999999999999   8877532221   11      2             66888


Q ss_pred             HHHHHHHHHHhc
Q 045736           78 GVFEAFAMGALE   89 (207)
Q Consensus        78 ~~~~~l~mva~g   89 (207)
                      +++++++++.++
T Consensus       325 ~~la~la~~va~  336 (654)
T TIGR00926       325 GLLAALSFFVAA  336 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            888988888776

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=91.62  E-value=0.19  Score=47.48  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             HhHHHHHHHHHHhc-Ccccccchhhhhhcccccchhhhhhccceeeeehhc-----------------ccchhhhhhhHH
Q 045736           76 LWGVFEAFAMGALE-DGHRPCVQVFRAEQFDGEHQEECKLKISFFNWSWRI-----------------TTPPSIAVEEEA  137 (207)
Q Consensus        76 i~~~~~~l~mva~g-g~~r~~~~~~gadqfd~~~~~~~~~~~s~Fnw~y~~-----------------~~p~~~l~g~~e  137 (207)
                      ..+++.++..+++| |..|+|++.+.+|++.++|++    +...|+.+|..                 .......+|+++
T Consensus       117 ~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aa  192 (498)
T COG3104         117 PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAA  192 (498)
T ss_pred             ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            34558899999999 999999999999999988875    44566777854                 122236667777


Q ss_pred             HHhhhhhhee
Q 045736          138 AFTMVGLQEF  147 (207)
Q Consensus       138 ~f~~v~~~ef  147 (207)
                      +-+..|+.-|
T Consensus       193 vGm~~gl~~f  202 (498)
T COG3104         193 VGMIIGLVIF  202 (498)
T ss_pred             HHHHHHHHHH
Confidence            7666666644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2xut_A	524	Proton/peptide symporter family protein; transport	1e-10

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 139 FTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEKATGGDGRDSWFANT 198
                  EF Y   P  ++   +S +  ++ VG++       +V+  T  +         
Sbjct: 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQ---IVQTG 477

Query: 199 LNKGHLDIF 207
           ++     +F
Sbjct: 478 MSVTAFQMF 486

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2xut_A	524	Proton/peptide symporter family protein; transport	95.03

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.03  E-value=0.029  Score=49.73  Aligned_cols=59  Identities=15%  Similarity=0.227  Sum_probs=52.5

Q ss_pred             ccchhhhhhhHHHHhhhhhheeeeccccchhhhHHHHHHHHhhhhHHHHHHHHHHHhhh
Q 045736          126 TTPPSIAVEEEAAFTMVGLQEFFYDHVPTEIRSLGLSLYLSTLGVGSILSSFIISAVEK  184 (207)
Q Consensus       126 ~~p~~~l~g~~e~f~~v~~~ef~y~~aP~~mks~~~al~~~~~~~g~~l~~~lv~~v~~  184 (207)
                      +++.+++.|+++.+..+....+..+.+|+++|+.+++++.....+|+.++..+...+..
T Consensus       408 ~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          408 QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66788999999999999999999999999999999999999999999998877765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00