Citrus Sinensis ID: 045775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENGNI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccEEEEccHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccEEEEcccHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MNATYIISIARKLGcsifllpediTEVNQKMILTLTASIMHWFMkqpveekasgisdsengsqsetisnstlddsasdssieengni
Flexible Loop (DISEMBL)
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGisdsengsqsetisnstlddsasdssieengni
Low Complexity Region (SEG)
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENGNI
Disordered region (IsUnstruct)
***TYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMK******************************************
Disordered Region (DISOPRED)
**ATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH**********************************************
Disordered Region (DISEMBL)
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVE**************************************
Disordered Region (DISPRO)
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ*****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSENGSQSETISNSTLDDSASDSSIEENGNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q9FKI0	687	Fimbrin-like protein 2 OS	no	no	0.908	0.114	0.547	1e-16
Q9FJ70	714	Putative fimbrin-like pro	no	no	0.528	0.064	0.782	1e-16
Q7G188	687	Fimbrin-1 OS=Arabidopsis	no	no	0.528	0.066	0.760	1e-14
Q61233	627	Plastin-2 OS=Mus musculus	yes	no	0.517	0.071	0.511	2e-07
Q6P698	624	Plastin-2 OS=Danio rerio	no	no	0.517	0.072	0.466	1e-06
Q99K51	630	Plastin-3 OS=Mus musculus	no	no	0.482	0.066	0.444	2e-06
O88818	630	Plastin-3 OS=Cricetulus g	no	no	0.482	0.066	0.444	3e-06
P13797	630	Plastin-3 OS=Homo sapiens	yes	no	0.482	0.066	0.444	3e-06
A7E3Q8	630	Plastin-3 OS=Bos taurus G	no	no	0.482	0.066	0.444	3e-06
P13796	627	Plastin-2 OS=Homo sapiens	no	no	0.517	0.071	0.511	3e-06

>sp|Q9FKI0|FIMB2_ARATH Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 5/84 (5%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKAS----GIS 56
           +NATYIIS+ARKLGCSIFLLPEDI EVNQKM+L L ASIM+W ++Q  + +++       
Sbjct: 578 LNATYIISVARKLGCSIFLLPEDIIEVNQKMMLILAASIMYWSLQQQSDTESTVSEDATD 637

Query: 57  DSENGSQSETISNSTLDDSASDSS 80
           D +  S +  ISN ++ D AS+SS
Sbjct: 638 DGDANSVAGEISNLSI-DGASESS 660

Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ70|FIMB3_ARATH Putative fimbrin-like protein 3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 43/46 (93%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W ++Q
Sbjct: 579 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQQ 624

Cross-links actin filaments (F-actin). Stabilizes and prevents F-actin depolymerization mediated by profilin. May regulate actin cytoarchitecture, cell cycle, cell division, cell elongation and cytoplasmic tractus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7G188|FIMB1_ARATH Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 43/46 (93%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 578 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 623

Cross-links actin filaments (F-actin) in a calcium independent manner. Stabilizes and prevents F-actin depolymerization mediated by profilin. Key regulator of actin cytoarchitecture, probably involved in cell cycle, cell division, cell elongation and cytoplasmic tractus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q61233|PLSL_MOUSE Plastin-2 OS=Mus musculus GN=Lcp1 PE=1 SV=4

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct: 582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

Actin-binding protein. Plays a role in the activation of T-cells in response to costimulation through TCR/CD3 and CD2 or CD28. Modulates the cell surface expression of IL2RA/CD25 and CD69.

Mus musculus (taxid: 10090)

>sp|Q6P698|PLSL_DANRE Plastin-2 OS=Danio rerio GN=lcp1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y IS+ARK+G  ++ LPED+ EV  KM++T+ A +M   M++
Sbjct: 579 NAKYAISMARKIGARVYALPEDLVEVKPKMVMTVFACLMARGMRR 623

Actin-binding protein. Plays a role in the activation of T-cells.

Danio rerio (taxid: 7955)

>sp|Q99K51|PLST_MOUSE Plastin-3 OS=Mus musculus GN=Pls3 PE=1 SV=3

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 585 NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 629

Actin-bundling protein.

Mus musculus (taxid: 10090)

>sp|O88818|PLST_CRIGR Plastin-3 OS=Cricetulus griseus GN=PLS3 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 585 NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 629

Actin-bundling protein.

Cricetulus griseus (taxid: 10029)

>sp|P13797|PLST_HUMAN Plastin-3 OS=Homo sapiens GN=PLS3 PE=1 SV=4

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 585 NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 629

Actin-bundling protein found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodia.

Homo sapiens (taxid: 9606)

>sp|A7E3Q8|PLST_BOVIN Plastin-3 OS=Bos taurus GN=PLS3 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 585 NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 629

Actin-bundling protein.

Bos taurus (taxid: 9913)

>sp|P13796|PLSL_HUMAN Plastin-2 OS=Homo sapiens GN=LCP1 PE=1 SV=6

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct: 582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

Actin-binding protein. Plays a role in the activation of T-cells in response to costimulation through TCR/CD3 and CD2 or CD28. Modulates the cell surface expression of IL2RA/CD25 and CD69.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
359494770	289	PREDICTED: fimbrin-like protein 2-like [	0.977	0.294	0.894	9e-38
147840522	652	hypothetical protein VITISV_022639 [Viti	0.977	0.130	0.894	2e-37
297742835	87	unnamed protein product [Vitis vinifera]	0.977	0.977	0.894	2e-37
356527290	665	PREDICTED: fimbrin-like protein 2-like [	1.0	0.130	0.827	6e-34
255572648	660	fimbrin, putative [Ricinus communis] gi|	0.931	0.122	0.829	2e-32
224065468	660	predicted protein [Populus trichocarpa]	0.931	0.122	0.806	2e-31
357505051	663	Fimbrin [Medicago truncatula] gi|3554978	0.919	0.120	0.813	3e-28
356504430	666	PREDICTED: fimbrin-like protein 2-like [	1.0	0.130	0.827	2e-27
449465292	666	PREDICTED: fimbrin-like protein 2-like [	1.0	0.130	0.827	2e-27
357513165	666	Fimbrin [Medicago truncatula] gi|3555208	1.0	0.130	0.829	2e-27

>gi|359494770|ref|XP_003634837.1| PREDICTED: fimbrin-like protein 2-like [Vitis vinifera]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 83/85 (97%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
           MNA+YIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+KQPVEE+ SG SDSEN
Sbjct: 203 MNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKQPVEERPSGASDSEN 262

Query: 61  GSQSETISNSTLDDSASDSSIEENG 85
           GSQSETISNST+DD+AS+SSIEENG
Sbjct: 263 GSQSETISNSTMDDTASESSIEENG 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840522|emb|CAN70564.1| hypothetical protein VITISV_022639 [Vitis vinifera]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 83/85 (97%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
           MNA+YIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+KQPVEE+ SG SDSEN
Sbjct: 566 MNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKQPVEERPSGASDSEN 625

Query: 61  GSQSETISNSTLDDSASDSSIEENG 85
           GSQSETISNST+DD+AS+SSIEENG
Sbjct: 626 GSQSETISNSTMDDTASESSIEENG 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742835|emb|CBI35589.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/85 (89%), Positives = 83/85 (97%)

Query: 1  MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
          MNA+YIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+KQPVEE+ SG SDSEN
Sbjct: 1  MNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKQPVEERPSGASDSEN 60

Query: 61 GSQSETISNSTLDDSASDSSIEENG 85
          GSQSETISNST+DD+AS+SSIEENG
Sbjct: 61 GSQSETISNSTMDDTASESSIEENG 85

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527290|ref|XP_003532244.1| PREDICTED: fimbrin-like protein 2-like [Glycine max]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 79/87 (90%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
           MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+K P+EE+    SDSE+
Sbjct: 579 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPLEERTVANSDSES 638

Query: 61  GSQSETISNSTLDDSASDSSIEENGNI 87
           GSQ ET SNSTLDDSASDSS EENG++
Sbjct: 639 GSQLETTSNSTLDDSASDSSTEENGSM 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572648|ref|XP_002527257.1| fimbrin, putative [Ricinus communis] gi|223533350|gb|EEF35101.1| fimbrin, putative [Ricinus communis]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 81/88 (92%), Gaps = 7/88 (7%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKAS-GISDSE 59
           MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+KQPVE+KAS GISD  
Sbjct: 579 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKQPVEDKASAGISD-- 636

Query: 60  NGSQSETISNSTLDDSASDSSIEENGNI 87
               SETISNST+DDSAS+SS+EENG++
Sbjct: 637 ----SETISNSTVDDSASESSLEENGHL 660

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065468|ref|XP_002301825.1| predicted protein [Populus trichocarpa] gi|222843551|gb|EEE81098.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 80/88 (90%), Gaps = 7/88 (7%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPV-EEKASGISDSE 59
           MNATYIISIARKLGCSIFLLPED+TEVNQKMILTLTASIM+W++KQPV ++K+SG SD  
Sbjct: 579 MNATYIISIARKLGCSIFLLPEDLTEVNQKMILTLTASIMYWYLKQPVDQDKSSGTSD-- 636

Query: 60  NGSQSETISNSTLDDSASDSSIEENGNI 87
               SETISNSTLDDSAS+SSIEENGN+
Sbjct: 637 ----SETISNSTLDDSASESSIEENGNL 660

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505051|ref|XP_003622814.1| Fimbrin [Medicago truncatula] gi|355497829|gb|AES79032.1| Fimbrin [Medicago truncatula]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 74/86 (86%), Gaps = 6/86 (6%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQP--VEEKASGISDS 58
           MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+K P  VEE+ S  SD 
Sbjct: 581 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEERTS--SDC 638

Query: 59  ENGSQSETISNSTLDDSASDSSIEEN 84
           E  SQ ETISNSTLDDSASD S E+N
Sbjct: 639 E--SQVETISNSTLDDSASDFSAEDN 662

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504430|ref|XP_003520999.1| PREDICTED: fimbrin-like protein 2-like [Glycine max]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 78/87 (89%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
           MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM W +K P EE+  G SD+E+
Sbjct: 580 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWCLKHPREERTVGTSDNES 639

Query: 61  GSQSETISNSTLDDSASDSSIEENGNI 87
           GSQ ET SNSTLDDSASDSSI+ENGN+
Sbjct: 640 GSQLETTSNSTLDDSASDSSIDENGNM 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465292|ref|XP_004150362.1| PREDICTED: fimbrin-like protein 2-like [Cucumis sativus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 79/87 (90%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
           MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM+WF+KQ  ++KAS  SDSEN
Sbjct: 580 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKQGGDDKASVSSDSEN 639

Query: 61  GSQSETISNSTLDDSASDSSIEENGNI 87
            SQSE ISNST DDSAS+SS +ENGN+
Sbjct: 640 SSQSEAISNSTTDDSASESSADENGNM 666

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513165|ref|XP_003626871.1| Fimbrin [Medicago truncatula] gi|355520893|gb|AET01347.1| Fimbrin [Medicago truncatula]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/88 (82%), Positives = 79/88 (89%), Gaps = 1/88 (1%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEK-ASGISDSE 59
           MNA+YIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM WF+K P EE+   G SDSE
Sbjct: 579 MNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWFLKHPHEERTVGGTSDSE 638

Query: 60  NGSQSETISNSTLDDSASDSSIEENGNI 87
           +GSQ ET SNSTLDDSASDSSI+ENGN+
Sbjct: 639 SGSQLETTSNSTLDDSASDSSIDENGNM 666

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:2166096	654	AT5G48460 [Arabidopsis thalian	0.850	0.113	0.698	1.9e-21
TAIR|locus:2049158	652	AT2G04750 "AT2G04750" [Arabido	0.896	0.119	0.576	4.1e-18
TAIR|locus:2173867	714	AT5G55400 [Arabidopsis thalian	0.919	0.112	0.55	1.7e-17
TAIR|locus:2116382	687	FIM1 "fimbrin 1" [Arabidopsis	0.908	0.114	0.542	5e-16
TAIR|locus:2177291	687	FIM5 "FIMBRIN5" [Arabidopsis t	0.908	0.114	0.547	5e-16
UNIPROTKB|B4DUA0	196	LCP1 "Plastin-2" [Homo sapiens	0.517	0.229	0.511	1.4e-07
UNIPROTKB|F1MYX5	627	LCP1 "Uncharacterized protein"	0.517	0.071	0.511	2e-06
UNIPROTKB|E2QWN7	627	LCP1 "Uncharacterized protein"	0.517	0.071	0.511	2e-06
UNIPROTKB|P13796	627	LCP1 "Plastin-2" [Homo sapiens	0.517	0.071	0.511	2e-06
MGI|MGI:104808	627	Lcp1 "lymphocyte cytosolic pro	0.517	0.071	0.511	2e-06

TAIR|locus:2166096 AT5G48460 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 58/83 (69%), Positives = 63/83 (75%)

Query:     1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVE-EKASGISDSE 59
             MNATY+ISIARKLGCSIFLLPEDI EVNQKM+LTLTASIM+W +KQP+   K  G  DS 
Sbjct:   580 MNATYVISIARKLGCSIFLLPEDIIEVNQKMMLTLTASIMYWTLKQPLHLNKPIGSPDSH 639

Query:    60 NGSQSETISNSTLDDSASDSSIE 82
             NGS         LDDS SDSSIE
Sbjct:   640 NGS--------LLDDSTSDSSIE 654

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2049158 AT2G04750 "AT2G04750" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.1e-18, P = 4.1e-18
 Identities = 45/78 (57%), Positives = 61/78 (78%)

Query:     1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
             +NATYIIS+ARKLGCSIFLLPEDI EVNQ+M+L L ASIM+W ++Q  + +++   D++ 
Sbjct:   574 LNATYIISVARKLGCSIFLLPEDILEVNQRMMLILAASIMNWSLQQQSDTESTVSDDTDV 633

Query:    61 GSQSETISNSTLDDSASD 78
              S +E ISN + DD +SD
Sbjct:   634 SSVTEEISNLSTDDGSSD 651

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2173867 AT5G55400 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 44/80 (55%), Positives = 58/80 (72%)

Query:     1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
             +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W ++Q      S  S S++
Sbjct:   579 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQQQSSSSESSSSSSDS 638

Query:    61 GSQSETISNSTLDDSASDSS 80
              S   T +  T   +++D+S
Sbjct:   639 SSTHSTTTTCTSTCTSTDAS 658

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2116382 FIM1 "fimbrin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 45/83 (54%), Positives = 56/83 (67%)

Query:     1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSEN 60
             +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++   E     SDS +
Sbjct:   578 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQRHSRES----SDSSS 633

Query:    61 GSQSETISNSTLDDSASDSSIEE 83
                + T   ST    A   + EE
Sbjct:   634 TQSTTTTCTSTASSPAPSVTEEE 656

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007623 "circadian rhythm" evidence=IEP

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

TAIR|locus:2177291 FIM5 "FIMBRIN5" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.0e-16, P = 5.0e-16
 Identities = 46/84 (54%), Positives = 61/84 (72%)

Query:     1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKAS----GIS 56
             +NATYIIS+ARKLGCSIFLLPEDI EVNQKM+L L ASIM+W ++Q  + +++       
Sbjct:   578 LNATYIISVARKLGCSIFLLPEDIIEVNQKMMLILAASIMYWSLQQQSDTESTVSEDATD 637

Query:    57 DSENGSQSETISNSTLDDSASDSS 80
             D +  S +  ISN ++D  AS+SS
Sbjct:   638 DGDANSVAGEISNLSID-GASESS 660

GO:0003779 "actin binding" evidence=IEA

GO:0009846 "pollen germination" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

UNIPROTKB|B4DUA0 LCP1 "Plastin-2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query:     2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
             NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct:   151 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 195

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1MYX5 LCP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query:     2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
             NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct:   582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033157 "regulation of intracellular protein transport" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002286 "T cell activation involved in immune response" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2QWN7 LCP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query:     2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
             NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct:   582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033157 "regulation of intracellular protein transport" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0002286 "T cell activation involved in immune response" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P13796 LCP1 "Plastin-2" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query:     2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
             NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct:   582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

GO:0042802 "identical protein binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0051017 "actin filament bundle assembly" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0031100 "organ regeneration" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0003779 "actin binding" evidence=NAS

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0033157 "regulation of intracellular protein transport" evidence=IDA

GO:0002286 "T cell activation involved in immune response" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

MGI|MGI:104808 Lcp1 "lymphocyte cytosolic protein 1" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query:     2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
             NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct:   582 NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 626

GO:0001726 "ruffle" evidence=IDA

GO:0001891 "phagocytic cup" evidence=IDA

GO:0002286 "T cell activation involved in immune response" evidence=ISO

GO:0003779 "actin binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0033157 "regulation of intracellular protein transport" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IDA

GO:0051017 "actin filament bundle assembly" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00012772001 SubName- Full=Chromosome undetermined scaffold_3487, whole genome shotgun sequence; (87 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	9e-09
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	9e-06
smart00033	101	smart00033, CH, Calponin homology domain	3e-04

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 47.7 bits (114), Expect = 9e-09
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 2   NATYIISIA-RKLGCSIFLLPEDITE-VNQKMILTLTASIMHWFM 44
           N    +  A +KLG    L PED+ E  N+K++LTL A +   F 
Sbjct: 60  NLNLALEFAEKKLGVPKVLEPEDLVEDGNEKLVLTLLAQLFRRFE 104

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 40.0 bits (94), Expect = 9e-06
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 2   NATYIISIARKLGCSIFLL-PEDITE-VNQKMILTLTASIMHWF 43
           N    ++ A KLG  +     ED+ E  ++K++L L  S++  F
Sbjct: 63  NINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 1  MNATYIISIARKLGCSIFLL-PEDITEVNQKMILTLTASIM 40
           N    +S A KLG  + L  PED+ E   K+IL +  +++
Sbjct: 60 ENINLALSFAEKLGGKVVLFEPEDLVEGP-KLILGVIWTLI 99

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG0046	627	consensus Ca2+-binding actin-bundling protein (fim	99.91
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	98.83
smart00033	103	CH Calponin homology domain. Actin binding domains	97.98
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	97.73
cd00014	107	CH Calponin homology domain; actin-binding domain	97.42
KOG0046	627	consensus Ca2+-binding actin-bundling protein (fim	95.14

>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]

Probab=99.91  E-value=1.4e-25  Score=189.47  Aligned_cols=48  Identities=58%  Similarity=0.937  Sum_probs=46.4

Q ss_pred             CCchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcCCc
Q 045775            1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPV   48 (87)
Q Consensus         1 ~NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~~~   48 (87)
                      +||||||||||||||+||+|||||||||||||||||||||+|++++..
T Consensus       573 ~NAkYaIS~ARKiGa~IyaLPEDIvEV~pKMvltvfA~lM~~~~~~~~  620 (627)
T KOG0046|consen  573 LNAKYAISVARKLGASIYALPEDIVEVNPKMVLTVFASLMAWSLQRQS  620 (627)
T ss_pred             hcchhhHhHHHhhCceEEeccHHHhhhchhhhHHHHHHHHHhcccccc
Confidence            599999999999999999999999999999999999999999999874

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=98.83  E-value=9.8e-10  Score=93.72  Aligned_cols=41  Identities=44%  Similarity=0.657  Sum_probs=39.7

Q ss_pred             CCch-hhhh--hhhhhcceEEecchhhhhhchhh-hHHHHHHHHH
Q 045775            1 MNAT-YIIS--IARKLGCSIFLLPEDITEVNQKM-ILTLTASIMH   41 (87)
Q Consensus         1 ~NAk-yaIS--iARKlGa~IfllpEDIveVk~KM-imT~~AsLM~   41 (87)
                      +||| |+||  ++||+||.||+|||||+.|||++ |+|||+|||+
T Consensus       567 ad~rsl~is~~ilRs~~aii~~lpe~in~~r~~Ldvltfi~slma  611 (612)
T COG5069         567 ADARSLAISSKILRSLGAIIKFLPEDINGVRPRLDVLTFIESLMA  611 (612)
T ss_pred             hhhhhhhccHHHHHHhhhHheechhhhcccCccchHHHHHHHHhc
Confidence            4899 9999  99999999999999999999999 9999999996

>smart00033 CH Calponin homology domain

Probab=97.98  E-value=6e-06  Score=50.92  Aligned_cols=41  Identities=34%  Similarity=0.497  Sum_probs=36.8

Q ss_pred             CCchhhhhhhhhhcc-eEEecchhhhhhchhhhHHHHHHHHHH
Q 045775            1 MNATYIISIARKLGC-SIFLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         1 ~NAkyaISiARKlGa-~IfllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      .|..++++.++++|. .+.+-||||++.+ |+++.++.+||.+
T Consensus        62 ~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~~l~~~  103 (103)
T smart00033       62 ENINLALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIWTLILL  103 (103)
T ss_pred             HhHHHHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHHHHHhC
Confidence            488999999999997 5688899999988 9999999999864

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=97.73  E-value=1.9e-05  Score=49.23  Aligned_cols=42  Identities=29%  Similarity=0.523  Sum_probs=37.5

Q ss_pred             Cchhhhhhhhh-hcceEEecchhhh-hhchhhhHHHHHHHHHHh
Q 045775            2 NATYIISIARK-LGCSIFLLPEDIT-EVNQKMILTLTASIMHWF   43 (87)
Q Consensus         2 NAkyaISiARK-lGa~IfllpEDIv-eVk~KMimT~~AsLM~~~   43 (87)
                      |++++++.+++ +|.....-|+||+ +.+.+.||.++..||.+-
T Consensus        64 Ni~~~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~  107 (108)
T PF00307_consen   64 NIELALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYF  107 (108)
T ss_dssp             HHHHHHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            78999999999 9999999999999 999999999999999763

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=97.42  E-value=8.9e-05  Score=46.26  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=38.7

Q ss_pred             CCchhhhhhhhhhcceEE-ecchhhh-hhchhhhHHHHHHHHHH
Q 045775            1 MNATYIISIARKLGCSIF-LLPEDIT-EVNQKMILTLTASIMHW   42 (87)
Q Consensus         1 ~NAkyaISiARKlGa~If-llpEDIv-eVk~KMimT~~AsLM~~   42 (87)
                      .|.++++..++++|.... +-|+||+ +.+.|.||+++.+|+..
T Consensus        62 ~Ni~~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~  105 (107)
T cd00014          62 ENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRK  105 (107)
T ss_pred             HHHHHHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHh
Confidence            388999999999999999 8999999 99999999999998864

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]

Probab=95.14  E-value=0.012  Score=51.33  Aligned_cols=40  Identities=30%  Similarity=0.535  Sum_probs=36.5

Q ss_pred             chhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHH
Q 045775            3 ATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         3 AkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      |...+.-|+|+||+=|+.|.|||+.+||+-+-|+|-|+..
T Consensus       325 A~~vLq~Aekl~Cr~~ltp~dvV~G~~kLNLAFVA~lFn~  364 (627)
T KOG0046|consen  325 AELVLQQAEKLDCRRYLTPTDVVAGNPKLNLAFVANLFNT  364 (627)
T ss_pred             HHHHHHHHHhcCCccccCHHHHhcCCchhhHHHHHHhccc
Confidence            5667888999999999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
3byh_B	231	Model Of Actin-Fimbrin Abd2 Complex Length = 231		5e-17
1pxy_A	506	Crystal Structure Of The Actin-Crosslinking Core Of		2e-16
2d85_A	124	Solution Structure Of The Fourth Ch Domain From Hum		6e-09
1wjo_A	124	Solution Structure Of The Forth Ch Domain From Huma		5e-08
1rt8_A	513	Crystal Structure Of The Actin-Crosslinking Core Of		2e-06

>pdb|3BYH|B Chain B, Model Of Actin-Fimbrin Abd2 Complex Length = 231

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 186 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 231

>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Arabidopsis Fimbrin Length = 506

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 461 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 506

>pdb|2D85|A Chain A, Solution Structure Of The Fourth Ch Domain From Human L- Plastin Length = 124

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y IS+ARK+G  ++ LPED+ EVN KM++T+ A +M   MK+
Sbjct: 73  NAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKR 117

>pdb|1WJO|A Chain A, Solution Structure Of The Forth Ch Domain From Human Plastin 3 T-Isoform Length = 124

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 73  NAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 117

>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Schizosaccharomyces Pombe Fimbrin Length = 513

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM 40
           NA   ISIARKLG  IF+LPEDI  V  +++L    S+M
Sbjct: 473 NARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLM 511

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	7e-18
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	3e-16
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	5e-05
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	9e-14
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	2e-05
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	3e-09
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	2e-07
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	3e-07
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	5e-07
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	2e-04

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Length = 124

 Score = 71.2 bits (174), Expect = 7e-18
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASG 54
            NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+ V   +SG
Sbjct: 72  NNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR-VSGPSSG 124

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 70.9 bits (173), Expect = 3e-16
 Identities = 35/46 (76%), Positives = 43/46 (93%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 461 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 506

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWF 43
            A  ++S A ++ C  +L  E+I E +  + L   A I H  
Sbjct: 212 RAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHER 253

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 63.6 bits (154), Expect = 9e-14
 Identities = 21/41 (51%), Positives = 26/41 (63%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH 41
            NA   ISIARKLG  IF+LPEDI  V  +++L    S+M 
Sbjct: 472 QNARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLMA 512

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEE 50
            A  ++  A KL C  +L P  +   N K+ L   A + +         
Sbjct: 221 RAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLN 269

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH 41
            A  ++  A KLGC  F+ P D+   N K+ L   A++ +
Sbjct: 236 RAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN 275

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 2   NATYIISIA-RKLGCSIFLLPEDITEVN--QKMILTLTASIMHWFMKQPVEE 50
              +  +IA  +LG    L PED+      +K IL    S+     +Q   E
Sbjct: 195 RLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQQVSIE 246

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 2   NATYIISIARK-LGCSIFLLPEDITEVN--QKMILTLTASIMH 41
           NA   +  A   LG    + PE+I + N  +  ++T  +    
Sbjct: 227 NAREAMQQADDWLGIPQVITPEEIVDPNVDKHSVMTYLSQFPK 269

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 2   NATYIISIARK-LGCSIFLLPEDITEVN--QKMILTLTASIMH 41
           NA   +  A   LG    + PE+I   +  +  ++T  +    
Sbjct: 200 NAREAVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPK 242

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 2   NATYIISIA-RKLGCSIFLLPEDITEVN--QKMILTLTASIMHWFMKQPVEEK 51
           N     S+A R LG +  L PED+      +K I+T  +S+     + P  ++
Sbjct: 192 NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRVPGAQE 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	99.85
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.19
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.15
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.1
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	98.95
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	98.88
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	98.82
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	98.82
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	98.79
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	98.78
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	98.75
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	98.74
1wyl_A	116	NEDD9 interacting protein with calponin homology a	98.66
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.64
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	98.52
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	98.52
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	98.51
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	98.44
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	98.02
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	98.0
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	97.95
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	96.95
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	96.08
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	95.25
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	95.04
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	94.49
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	94.32
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	93.83
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	93.79
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	93.32
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	92.08
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	91.37

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=99.85  E-value=9.2e-23  Score=141.55  Aligned_cols=48  Identities=42%  Similarity=0.686  Sum_probs=45.8

Q ss_pred             CCchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcCCc
Q 045775            1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPV   48 (87)
Q Consensus         1 ~NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~~~   48 (87)
                      .|||||||+|||+||++|++||||||||||||||||||||.+++++..
T Consensus        72 ~Na~~ais~ArklG~~~~l~pEDIve~~pK~ilt~va~l~~~~~~~~~  119 (124)
T 1wjo_A           72 NNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRVS  119 (124)
T ss_dssp             HHHHHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHhcCcchhhHHHHHHHHHHHhhccC
Confidence            499999999999999999999999999999999999999999998763

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.19  E-value=4.2e-12  Score=93.33  Aligned_cols=39  Identities=33%  Similarity=0.603  Sum_probs=38.4

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHH
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM   40 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM   40 (87)
                      ||+||+++|||+|+..|+.||||++.++||||||+|+||
T Consensus       236 n~~~a~~~A~~lGi~~~l~peDi~~~~~k~i~tyva~Lf  274 (275)
T 1aoa_A          236 RAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLF  274 (275)
T ss_dssp             HHHHHHHHHTTTTCCCSCCHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcCCHHHcCCCChhHHHHHHHHHh
Confidence            899999999999999999999999999999999999997

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.15  E-value=7.4e-12  Score=99.16  Aligned_cols=41  Identities=51%  Similarity=0.789  Sum_probs=39.8

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHH
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      |++||+++|||+|+..|+.||||++++||||||++++||.+
T Consensus       473 n~~~af~~A~~lGi~~~l~peDi~~~~pksi~tyva~l~~~  513 (513)
T 1rt8_A          473 NARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLMAV  513 (513)
T ss_dssp             HHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCccCCHHHhcCCCcccHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999974

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.10  E-value=2.4e-11  Score=95.88  Aligned_cols=45  Identities=78%  Similarity=1.215  Sum_probs=43.4

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcC
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~   46 (87)
                      |++||+++|||+|+..|+.||||+++++|||||++++||.+.++|
T Consensus       462 N~~~a~~~a~~lGi~~~l~peDi~~~d~ksi~tyv~~l~~~~~~~  506 (506)
T 1pxy_A          462 NATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR  506 (506)
T ss_dssp             HHHHHHHHHHHHTCCCCCCHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCCcCCHHHccCCChhHHHHHHHHHHHHHhhC
Confidence            899999999999999999999999999999999999999998864

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=76.37  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             CCchhhhhhhhhhcceEEecchhhhhh---chhhhHHHHHHHHHHhhc
Q 045775            1 MNATYIISIARKLGCSIFLLPEDITEV---NQKMILTLTASIMHWFMK   45 (87)
Q Consensus         1 ~NAkyaISiARKlGa~IfllpEDIveV---k~KMimT~~AsLM~~~~~   45 (87)
                      .|+++|+++|||||+..|+.||||+++   ++|+|||++++|+.....
T Consensus        67 ~n~~~af~~a~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~~f~~  114 (119)
T 2d89_A           67 ENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSS  114 (119)
T ss_dssp             HHHHHHHHHHHHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHHHccC
Confidence            389999999999999999999999975   899999999999977544

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=98.88  E-value=5.1e-10  Score=80.87  Aligned_cols=44  Identities=30%  Similarity=0.418  Sum_probs=39.9

Q ss_pred             Cchhhhhhhhh-hcceEEecchhhhhhch--hhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIARK-LGCSIFLLPEDITEVNQ--KMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiARK-lGa~IfllpEDIveVk~--KMimT~~AsLM~~~~~   45 (87)
                      |++||+++|+| +|+..|+.||||++++|  |+|||++++||..-..
T Consensus       192 n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~tyva~l~~~~~~  238 (245)
T 1sh5_A          192 NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPR  238 (245)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHHHHHcCC
Confidence            89999999997 99999999999998866  9999999999987554

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=98.82  E-value=1.2e-09  Score=80.14  Aligned_cols=46  Identities=28%  Similarity=0.352  Sum_probs=41.1

Q ss_pred             Cchhhhhhhhh-hcceEEecchhhhhh-ch--hhhHHHHHHHHHHhhcCC
Q 045775            2 NATYIISIARK-LGCSIFLLPEDITEV-NQ--KMILTLTASIMHWFMKQP   47 (87)
Q Consensus         2 NAkyaISiARK-lGa~IfllpEDIveV-k~--KMimT~~AsLM~~~~~~~   47 (87)
                      |++||+++|+| +|+..|+.||||+++ +|  |+|||++++|+.......
T Consensus       199 n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~~~  248 (254)
T 1wku_A          199 NLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAE  248 (254)
T ss_dssp             HHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhccc
Confidence            89999999998 999999999999998 35  999999999999876654

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=98.82  E-value=9.3e-10  Score=83.97  Aligned_cols=42  Identities=33%  Similarity=0.424  Sum_probs=38.9

Q ss_pred             CCchhhhhhh-hhhcceEEecchhhhhhch--hhhHHHHHHHHHH
Q 045775            1 MNATYIISIA-RKLGCSIFLLPEDITEVNQ--KMILTLTASIMHW   42 (87)
Q Consensus         1 ~NAkyaISiA-RKlGa~IfllpEDIveVk~--KMimT~~AsLM~~   42 (87)
                      .|++||+++| |++|+..|+.||||+..+|  |+|||++++||..
T Consensus       247 ~N~~~Af~~Ae~~LGi~~ll~pEDi~~~~pDeksimtyvs~ly~~  291 (296)
T 3f7p_A          247 ENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDA  291 (296)
T ss_dssp             HHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCccCCHHHhcCCCCcHHHHHHHHHHHHHH
Confidence            3899999999 8999999999999999877  9999999999865

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=98.79  E-value=7e-10  Score=85.12  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=43.3

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhhhch--hhhHHHHHHHHHHhhcCCc
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITEVNQ--KMILTLTASIMHWFMKQPV   48 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIveVk~--KMimT~~AsLM~~~~~~~~   48 (87)
                      .|++||+++||| +|+..|+.||||+..+|  |+|||+++++|...+++..
T Consensus       196 ~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDeksimtYvs~~~~~~~~~~~  246 (347)
T 4b7l_A          196 DNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGA  246 (347)
T ss_dssp             HHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHTTGGGCCCCTTC
T ss_pred             HHHHHHHHHHHHhcCCCcccCHHHcCCCCCChhHHHHHHHHHhhhccCccc
Confidence            389999999998 99999999999997777  9999999999998877643

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=98.78  E-value=1.8e-09  Score=85.23  Aligned_cols=45  Identities=27%  Similarity=0.403  Sum_probs=42.1

Q ss_pred             CCchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhc
Q 045775            1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMK   45 (87)
Q Consensus         1 ~NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~   45 (87)
                      .||+||+++|+|+|+..|+.||||++++||+||||+++||.....
T Consensus       211 ~n~~~a~~~a~~lGi~~~l~peDi~~~~~k~v~tyva~l~~~~~~  255 (506)
T 1pxy_A          211 ERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHERNG  255 (506)
T ss_dssp             HHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHcCCCCcCCHHHHhcCChhHHHHHHHHHhhhcCC
Confidence            389999999999999999999999999999999999999988544

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=98.75  E-value=1.5e-09  Score=78.92  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             Cchhhhhhhhh-hcceEEecchhhhh--hchhhhHHHHHHHHHH
Q 045775            2 NATYIISIARK-LGCSIFLLPEDITE--VNQKMILTLTASIMHW   42 (87)
Q Consensus         2 NAkyaISiARK-lGa~IfllpEDIve--Vk~KMimT~~AsLM~~   42 (87)
                      |++||+++|+| +|+..|+.||||++  ++.|+|||+++.++..
T Consensus       200 n~~~a~~~A~~~lGi~~~l~peDi~~~~~d~ksi~tyvs~~~~~  243 (245)
T 2wa7_A          200 NAREAVQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKA  243 (245)
T ss_dssp             HHHHHHHHHHHHSCCCCSSCHHHHTCTTCCHHHHHHHHTHHHHC
T ss_pred             HHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHHhcc
Confidence            89999999999 99999999999999  8889999999998754

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=98.74  E-value=2.4e-09  Score=77.76  Aligned_cols=44  Identities=30%  Similarity=0.402  Sum_probs=40.5

Q ss_pred             Cchhhhhhhh-hhcceEEecchhhhhhch--hhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIAR-KLGCSIFLLPEDITEVNQ--KMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiAR-KlGa~IfllpEDIveVk~--KMimT~~AsLM~~~~~   45 (87)
                      |+++|+++|+ ++|+..|+.||||++.+|  |+|||++++||..-..
T Consensus       195 n~~~a~~~A~~~lGi~~~l~peDi~~~~pD~k~i~tyva~l~~~~~~  241 (246)
T 1dxx_A          195 RLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQ  241 (246)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHhCCCCccCCHHHhhcCCCcHHHHHHHHHHHHHHccC
Confidence            7899999998 899999999999999999  9999999999976443

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=98.66  E-value=8.4e-09  Score=68.93  Aligned_cols=45  Identities=9%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhhh-chhhhHHHHHHHHHHhhc
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITEV-NQKMILTLTASIMHWFMK   45 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIveV-k~KMimT~~AsLM~~~~~   45 (87)
                      .|+++|+++|+| +|+..++-||||+.. ++|.|||++++|+.....
T Consensus        65 ~n~~~af~~Ae~~lgi~~lL~peD~~~~~d~ksv~tYvs~l~~~~~~  111 (116)
T 1wyl_A           65 EATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSAFKS  111 (116)
T ss_dssp             HHHHHHHHHHHHTTCCCCCSCHHHHHHTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHcCCccccCHHHHhcCCchhHHHHHHHHHHHHccC
Confidence            389999999998 999999999999996 999999999999976544

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.64  E-value=6.1e-09  Score=83.85  Aligned_cols=47  Identities=30%  Similarity=0.339  Sum_probs=42.1

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhhh-ch--hhhHHHHHHHHHHhhcCC
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITEV-NQ--KMILTLTASIMHWFMKQP   47 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIveV-k~--KMimT~~AsLM~~~~~~~   47 (87)
                      .|++||+++|+| +||..|+.|||||++ +|  |+|||++++||.......
T Consensus       179 ~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~~~~~  229 (863)
T 1sjj_A          179 TNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQ  229 (863)
T ss_dssp             GGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTTTCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence            489999999998 999999999999998 56  999999999998866543

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=98.52  E-value=3.2e-08  Score=66.66  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhh---hchhhhHHHHHHHHHHhhcC
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITE---VNQKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIve---Vk~KMimT~~AsLM~~~~~~   46 (87)
                      .|+++|+++|+| +|+..++-||||++   +..|.|||++++|+......
T Consensus        67 ~n~~~af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~~~~~  116 (121)
T 2d88_A           67 KNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDS  116 (121)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHcccC
Confidence            389999999985 99999999999997   58899999999999876553

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=98.52  E-value=5.4e-08  Score=66.37  Aligned_cols=46  Identities=20%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhhhc---hhhhHHHHHHHHHHhhcC
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITEVN---QKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIveVk---~KMimT~~AsLM~~~~~~   46 (87)
                      .|+++|+++|+| +|+..|+-||||++++   .|.|||+++.|+..-.++
T Consensus        65 ~n~~~af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~~  114 (128)
T 2d87_A           65 QNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQK  114 (128)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHHhhc
Confidence            389999999998 8999999999999887   799999999999876544

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=98.51  E-value=8.8e-09  Score=77.49  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=37.6

Q ss_pred             CCchhhhhhhhh-hcceEEecchhhhh--hchhhhHHHHHHHHH
Q 045775            1 MNATYIISIARK-LGCSIFLLPEDITE--VNQKMILTLTASIMH   41 (87)
Q Consensus         1 ~NAkyaISiARK-lGa~IfllpEDIve--Vk~KMimT~~AsLM~   41 (87)
                      .|++||+++|+| +|+..|+.||||++  +.+|+|||++++++.
T Consensus       226 ~n~~~Af~~Ae~~lGi~~ll~peDiv~~~pD~ksimtYvs~~~~  269 (272)
T 3hoc_A          226 TNAREAMQQADDWLGIPQVITPEEIVDPNVDKHSVMTYLSQFPK  269 (272)
T ss_dssp             HHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHHhCCCCccCCHHHhccCCCChHHHHHHHHHhhc
Confidence            389999999999 99999999999999  999999999998654

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.44  E-value=6.1e-08  Score=76.79  Aligned_cols=45  Identities=24%  Similarity=0.373  Sum_probs=42.2

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcC
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~   46 (87)
                      |+++|+++|+|+|+..|+-||||++.++|++||++++||......
T Consensus       221 n~~~a~~~a~~lgi~~~l~peDi~~~~~k~il~yva~l~~~~~~~  265 (513)
T 1rt8_A          221 RAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGL  265 (513)
T ss_dssp             HHHHHHHHHHTTTCCCSCCHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHcCCCccCCHHHhcCCCHHHHHHHHHHHHhhhccc
Confidence            899999999999999999999999999999999999999886543

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=98.02  E-value=2.2e-06  Score=56.57  Aligned_cols=43  Identities=33%  Similarity=0.512  Sum_probs=37.8

Q ss_pred             Cchhhhhhhh-hhcceEEecchhhhhhc--hhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIAR-KLGCSIFLLPEDITEVN--QKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiAR-KlGa~IfllpEDIveVk--~KMimT~~AsLM~~~~   44 (87)
                      |+++|+++|. ++|+.-++-||||+.-+  .|.|||++++|+....
T Consensus        62 n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksi~tYvs~~~~~f~  107 (109)
T 1bkr_A           62 NLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFS  107 (109)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCccCCHHHccCCCCcHHHHHHHHHHHHHHhh
Confidence            8999999996 89999999999998745  5999999999987643

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=98.00  E-value=2.4e-06  Score=57.98  Aligned_cols=46  Identities=33%  Similarity=0.494  Sum_probs=40.5

Q ss_pred             Cchhhhhhhh-hhcceEEecchhhhhhc--hhhhHHHHHHHHHHhhcCC
Q 045775            2 NATYIISIAR-KLGCSIFLLPEDITEVN--QKMILTLTASIMHWFMKQP   47 (87)
Q Consensus         2 NAkyaISiAR-KlGa~IfllpEDIveVk--~KMimT~~AsLM~~~~~~~   47 (87)
                      |+++|+++|. ++|+.-++-||||+.-+  .|.|||+++.|+......+
T Consensus        66 n~~~af~~Ae~~Lgi~~ll~~eDv~~~~pDeksimtYvs~l~~~~~~~~  114 (127)
T 1wyq_A           66 NLQNAFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMK  114 (127)
T ss_dssp             HHHHHHHHHHHTTCCCCCSCTTTSCSSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHhccCCCcHHHHHHHHHHHHHHhhcCC
Confidence            8899999997 89999999999997644  5999999999998876654

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=97.95  E-value=3.4e-06  Score=56.50  Aligned_cols=44  Identities=25%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             Cchhhhhhhh-hhcceEEecchhhhhh--chhhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIAR-KLGCSIFLLPEDITEV--NQKMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiAR-KlGa~IfllpEDIveV--k~KMimT~~AsLM~~~~~   45 (87)
                      |+++|+++|. ++|+.-++-|||++.-  ..|.|||++++|+.....
T Consensus        67 n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksvmtYvs~l~~~~~~  113 (118)
T 1bhd_A           67 RLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVLPQ  113 (118)
T ss_dssp             HHHHHHHHHHHHHCCCCCSCHHHHHTSCCCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHhhcCCCcHHHHHHHHHHHHHHCcC
Confidence            7899999996 9999999999999865  449999999999876543

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=96.95  E-value=0.00036  Score=47.28  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=39.1

Q ss_pred             Cchhhhhhhhhhcce-EEecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCS-IFLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~-IfllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+|+..+++.|+. +.+-|||||+.++|++|-++-+||....
T Consensus        85 Nv~~aL~~lk~~gi~l~~I~~~DIvdGn~kliLgLiW~li~~~~  128 (131)
T 2vzc_A           85 NVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYR  128 (131)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCcCCCCHHHhhCCCHHhHHHHHHHHHHHHh
Confidence            889999999999997 5899999999999999999999987643

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.08  E-value=0.0032  Score=41.75  Aligned_cols=44  Identities=27%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~~   45 (87)
                      |..+++..+++.|+.+ -+-|+||++-++|+||-++-+||.....
T Consensus        81 Nv~~aL~~~~~~gv~~~~i~~~DI~dgn~~~iL~Llw~L~r~~q~  125 (129)
T 2yrn_A           81 NIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQ  125 (129)
T ss_dssp             HHHHHHHHHHHHTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCCcccCCChhhhhcCCHhHHHHHHHHHHHHHhh
Confidence            7788999999999884 6789999999999999999999855443

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=95.25  E-value=0.0089  Score=43.65  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             CchhhhhhhhhhcceEE-ecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSIF-LLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~If-llpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+++..+++.|+.+- +-|+||++.++|++|-++=.||...+
T Consensus        96 Nv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLlw~li~~~~  139 (275)
T 1aoa_A           96 NLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGL  139 (275)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccCCCHHHHHcCcHHHHHHHHHHHHHHhh
Confidence            77899999999999864 68999999999999999999986543

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=95.04  E-value=0.013  Score=42.36  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             CchhhhhhhhhhcceEE-ecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSIF-LLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~If-llpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+++..+++.|+.+. +-|+||++.++|+||-++=.||....
T Consensus        82 Nv~~aL~~~k~~g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~  125 (245)
T 2wa7_A           82 NVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS  125 (245)
T ss_dssp             HHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccCCCHHHhhCCCHHHHHHHHHHHHHHHc
Confidence            78899999999999854 67999999999999999999987654

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=94.49  E-value=0.02  Score=42.95  Aligned_cols=43  Identities=16%  Similarity=0.246  Sum_probs=38.6

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+++..+++.|+.+ -+-|+|||+.++|+||-++=+||....
T Consensus       109 Nv~~aL~~lk~~gv~lvnI~~~DIvdGn~kliLgLlW~Li~~~~  152 (272)
T 3hoc_A          109 NVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYS  152 (272)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhcCCHHHHHHHHHHHHHHHh
Confidence            7889999999999986 478999999999999999999987654

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=94.32  E-value=0.022  Score=41.50  Aligned_cols=43  Identities=23%  Similarity=0.303  Sum_probs=37.9

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+++..+++.|+.+ -+-|+||++.++|++|-++-.||....
T Consensus        87 Ni~~aL~~~k~~gv~lv~I~~~DIvdG~~kliLgLlW~li~~~~  130 (254)
T 1wku_A           87 NVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFA  130 (254)
T ss_dssp             HHHHHHHHHHTTTCCCCSCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCccCCCHHHHhccchHHHHHHHHHHHHHHh
Confidence            7789999999999985 478999999999999999998887654

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=93.83  E-value=0.025  Score=40.74  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=36.6

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHH
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      |..+++..+++.|+.+ -+-|+||++.++|++|-++=.||..
T Consensus        76 Nv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liL~Llw~li~~  117 (246)
T 1dxx_A           76 NVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILH  117 (246)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccccCCHHHhhcccHHHHHHHHHHHHHH
Confidence            7889999999999974 5789999999999999999888764

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=93.79  E-value=0.034  Score=39.82  Aligned_cols=44  Identities=23%  Similarity=0.287  Sum_probs=38.5

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~~   45 (87)
                      |..+++..+++.|+.+ -+-++||++.++|++|-++=.||....-
T Consensus        76 Nv~~aL~~~k~~g~~l~~I~~~DIvdg~~k~iLgLlw~li~~~~i  120 (245)
T 1sh5_A           76 NVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQI  120 (245)
T ss_dssp             HHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCCcccCCChHhhhcccHHHHHHHHHHHHHhhcc
Confidence            7789999999999874 5789999999999999999999876543

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=93.32  E-value=0.034  Score=44.88  Aligned_cols=43  Identities=23%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             CchhhhhhhhhhcceEE-ecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSIF-LLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~If-llpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+++..++..|+.+. +-|+|||+.++|+||-++-.||....
T Consensus        68 N~~~~l~~~~~~g~~~~~i~~~di~~g~~~~~l~l~w~l~~~~~  111 (863)
T 1sjj_A           68 NVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFA  111 (863)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCSHHHHTTCHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHcCCccCCCChHHhhcCCHHHHHHHHHHHHHHHh
Confidence            78899999999999864 88999999999999999999886544

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=92.08  E-value=0.07  Score=40.76  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+|+..+++.|+.+ =+-++||++-++|+||-++=.||....
T Consensus        79 Nv~~al~~~~~~g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~  122 (347)
T 4b7l_A           79 NVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYS  122 (347)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCcchhhcCCHhhHHHHHHHHHHHHh
Confidence            7889999999999985 578999999999999999999997654

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=91.37  E-value=0.099  Score=39.71  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |..+|+..++..|+.+ =+-++|||+-++|+||-++=+||....
T Consensus       132 Nvn~aL~~lk~~gv~lv~I~~~DIvdGn~kliLgLlW~Li~~~~  175 (296)
T 3f7p_A          132 NVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ  175 (296)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCccccCCChhhhhccchHHHHHHHHHhhcccc
Confidence            7889999999999875 467999999999999999999997644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	2e-15
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	4e-07
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-11
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	6e-07
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	4e-11
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	2e-09

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 66.9 bits (163), Expect = 2e-15
 Identities = 35/46 (76%), Positives = 43/46 (93%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
           +NATYI+S+ARKLGCS+FLLPEDI EVNQKMIL LTASIM+W +++
Sbjct: 455 LNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR 500

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.8 bits (103), Expect = 4e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKAS 53
            A  ++S A ++ C  +L  E+I E +  + L   A I H       + K +
Sbjct: 206 RAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHERNGLNKDGKYA 257

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 56.6 bits (136), Expect = 1e-11
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM 40
           NA   ISIARKLG  IF+LPEDI  V  +++L    S+M
Sbjct: 465 NARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLM 503

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.1 bits (101), Expect = 6e-07
 Identities = 13/76 (17%), Positives = 24/76 (31%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPVEEKASGISDSENG 61
            A  ++  A KL C  +L P  +   N K+ L   A + +         +          
Sbjct: 213 RAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFD 272

Query: 62  SQSETISNSTLDDSAS 77
           ++ E  +        S
Sbjct: 273 AEGEREARVFTLWLNS 288

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-11
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 1   MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ 46
            NA Y +S+AR++G  ++ LPED+ EV  KM++T+ A +M   MK+
Sbjct: 72  NNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKR 117

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-09
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 2   NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMH 41
            A  ++  A KLGC  F+ P D+   N K+ L   A++ +
Sbjct: 77  RAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLFN 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.49
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	99.32
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.22
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.82
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.08
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	98.07
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.67
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	97.35
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	96.73
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.55
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	96.32

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-15  Score=99.01  Aligned_cols=48  Identities=42%  Similarity=0.686  Sum_probs=45.7

Q ss_pred             CCchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcCCc
Q 045775            1 MNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQPV   48 (87)
Q Consensus         1 ~NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~~~   48 (87)
                      .|++||+++|||+|+.+|+.||||++.|+||||+|+++||.+++++..
T Consensus        72 ~N~~~al~~~~~lgi~~~i~~eDI~~gn~k~iL~~i~~L~~~~~~~~~  119 (124)
T d1wjoa_          72 NNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRVS  119 (124)
T ss_dssp             HHHHHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHhCCcccCCHHHccCCCchHHHHHHHHHHHHHhhccC
Confidence            399999999999999999999999999999999999999999998764

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=2.1e-13  Score=106.70  Aligned_cols=45  Identities=78%  Similarity=1.215  Sum_probs=43.8

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcC
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~   46 (87)
                      |++|+|++|||+|+..|+.||||+++++|||||++||||+++++|
T Consensus       456 N~~~a~~~a~~lGip~ll~peDv~~~deksv~tyvs~l~~~~l~~  500 (500)
T d1pxya_         456 NATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWSLQR  500 (500)
T ss_dssp             HHHHHHHHHHHHTCCCCCCHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCccCCHHHCCCCCcchhHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999875

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1e-12  Score=101.96  Aligned_cols=41  Identities=51%  Similarity=0.789  Sum_probs=39.7

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHH
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      |++||+++|||+|+..|+.||||++++||||||+++|||+.
T Consensus       465 n~~~a~~~A~~lgi~~ll~peDi~~~~~ksimtyvssL~~~  505 (505)
T d1rt8a_         465 NARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIGSLMAV  505 (505)
T ss_dssp             HHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCccCCHHHcCCCCcchhHHhhhHHhcC
Confidence            89999999999999999999999999999999999999963

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.5e-10  Score=71.01  Aligned_cols=39  Identities=33%  Similarity=0.603  Sum_probs=37.8

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHH
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIM   40 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM   40 (87)
                      ||++++..+|++|...++-||||++.++|+||+|+++|+
T Consensus        77 n~~~~l~~~~~lgi~~~i~~eDIv~gn~k~iL~lv~~Lf  115 (116)
T d1aoaa2          77 RAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANLF  115 (116)
T ss_dssp             HHHHHHHHHTTTTCCCSCCHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcCcCHHhCcCCCHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999986

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=5e-07  Score=70.08  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=41.7

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhhcC
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFMKQ   46 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~~~   46 (87)
                      ||++++..|+|+|+.-|+-||||++.+||++|+|+|+|+......
T Consensus       206 ~~~~a~~~a~~lgip~~l~peDI~~~~~k~~l~~va~lf~~~p~~  250 (500)
T d1pxya_         206 RAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHERNGL  250 (500)
T ss_dssp             HHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCCccCCHHHhcCCcHHHHHHHHHHHHHhcccc
Confidence            799999999999999999999999999999999999999765443

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.07  E-value=5.1e-07  Score=69.53  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=40.6

Q ss_pred             CchhhhhhhhhhcceEEecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~IfllpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      ||++|+..|+|+|+.-|+-||||+..++|++|||+|+|+...-
T Consensus       213 n~~~a~~~ae~lgi~~~l~p~Div~~~~k~~l~~va~l~~~~p  255 (505)
T d1rt8a_         213 RAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTHP  255 (505)
T ss_dssp             HHHHHHHHHHTTTCCCSCCHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCccCCHHHhcCCChhhHHHHHHHHhhcCC
Confidence            8999999999999999999999999999999999999997644

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7.7e-06  Score=53.33  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=40.3

Q ss_pred             CchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHHhhc
Q 045775            2 NATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHWFMK   45 (87)
Q Consensus         2 NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~~~~   45 (87)
                      |.++++..++++|+.+ .+-|+||++.++|+||.|+-+||...+-
T Consensus        76 N~~~~L~~~k~~gi~l~~i~~~DIvdG~~k~iL~Lvw~li~~~~~  120 (131)
T d1aoaa1          76 NLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLLWQIIKIGLF  120 (131)
T ss_dssp             HHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCChhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            8899999999999996 5889999999999999999999987654

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.5e-06  Score=51.55  Aligned_cols=42  Identities=19%  Similarity=0.226  Sum_probs=38.5

Q ss_pred             CCchhhhhhhhhhcceE-EecchhhhhhchhhhHHHHHHHHHH
Q 045775            1 MNATYIISIARKLGCSI-FLLPEDITEVNQKMILTLTASIMHW   42 (87)
Q Consensus         1 ~NAkyaISiARKlGa~I-fllpEDIveVk~KMimT~~AsLM~~   42 (87)
                      .|+.+|+..+++.|+.+ .+.|+||++.+.|+||.|+.+||..
T Consensus        67 ~N~~~aL~~~k~~~~~~~~i~~~dI~~Gn~k~iL~llw~l~~~  109 (111)
T d1dxxa1          67 NNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILH  109 (111)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcccCCCHHHHHcCCHHHHHHHHHHHHHH
Confidence            38899999999999985 6899999999999999999999875

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.7e-05  Score=48.33  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=39.2

Q ss_pred             CchhhhhhhhhhcceEE-ecchhhhhhchhhhHHHHHHHHHHhh
Q 045775            2 NATYIISIARKLGCSIF-LLPEDITEVNQKMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiARKlGa~If-llpEDIveVk~KMimT~~AsLM~~~~   44 (87)
                      |.++|+..++..|+.+. +-||||++.++|+||-|+.+|+....
T Consensus        69 N~~~aL~~~~~~~~~l~~i~~~dI~~Gn~k~iL~llw~L~~~~~  112 (120)
T d1sh5a1          69 NVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQ  112 (120)
T ss_dssp             HHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccccCCcHHhhccCcHHHHHHHHHHHHHHhc
Confidence            88999999999998876 99999999999999999999997654

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0003  Score=44.85  Aligned_cols=40  Identities=35%  Similarity=0.492  Sum_probs=35.5

Q ss_pred             Cchhhhhhh-hhhcceEEecchhhhhhch--hhhHHHHHHHHH
Q 045775            2 NATYIISIA-RKLGCSIFLLPEDITEVNQ--KMILTLTASIMH   41 (87)
Q Consensus         2 NAkyaISiA-RKlGa~IfllpEDIveVk~--KMimT~~AsLM~   41 (87)
                      |.++|+++| +++|...++-|||++..+|  |-|||+++.|..
T Consensus        65 ~~~~a~~~Ae~~lgip~ll~~eD~~~~~pD~~sv~~Yvs~ly~  107 (110)
T d1sh5a2          65 NLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYD  107 (110)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCHHHHccCCCcHHHHHHHHHHHHH
Confidence            778999999 8899999999999988764  889999998853

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00039  Score=45.31  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=36.9

Q ss_pred             Cchhhhhhh-hhhcceEEecchhhhhhch--hhhHHHHHHHHHHh
Q 045775            2 NATYIISIA-RKLGCSIFLLPEDITEVNQ--KMILTLTASIMHWF   43 (87)
Q Consensus         2 NAkyaISiA-RKlGa~IfllpEDIveVk~--KMimT~~AsLM~~~   43 (87)
                      |++.|+++| +++|+.-++-||||+.-+|  |-||++++.|...-
T Consensus        76 ~~~~a~~~Ae~~lgip~ll~~~d~~~~~pD~ksi~~Yvs~l~~~~  120 (127)
T d1dxxa2          76 RLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVL  120 (127)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCCCCcCCHHHhccCCCcHHHHHHHHHHHHHHc
Confidence            678999999 7899999999999988776  99999999887643

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00086  Score=42.10  Aligned_cols=43  Identities=33%  Similarity=0.506  Sum_probs=37.2

Q ss_pred             Cchhhhhhh-hhhcceEEecchhhhhhch--hhhHHHHHHHHHHhh
Q 045775            2 NATYIISIA-RKLGCSIFLLPEDITEVNQ--KMILTLTASIMHWFM   44 (87)
Q Consensus         2 NAkyaISiA-RKlGa~IfllpEDIveVk~--KMimT~~AsLM~~~~   44 (87)
                      |.++++.+| +++|+.-++-|||++.-+|  |-|||+++.|+..-.
T Consensus        61 ~~~~a~~~ae~~lgip~ll~~ed~~~~~pD~~si~~Yvs~~~~~f~  106 (108)
T d1bkra_          61 NLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFS  106 (108)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCcCCHHhccCCCCcHHHHHHHHHHHHHHHh
Confidence            678899999 6699999999999987765  999999999987644

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00089  Score=42.14  Aligned_cols=40  Identities=28%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             Cchhhhhhh-hhhcceEEecchhhhhhc--hhhhHHHHHHHHH
Q 045775            2 NATYIISIA-RKLGCSIFLLPEDITEVN--QKMILTLTASIMH   41 (87)
Q Consensus         2 NAkyaISiA-RKlGa~IfllpEDIveVk--~KMimT~~AsLM~   41 (87)
                      |.++|+.+| +++|+..++-|||++.-+  .|-|||+++.|..
T Consensus        64 ~~~~af~~a~~~lgip~ll~~~D~~~~~pD~~si~~Yvs~~y~  106 (108)
T d1bhda_          64 RLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFE  106 (108)
T ss_dssp             HHHHHHHHHHHHHCCCCCSCHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHhccCCCcHHHHHHHHHHHHH
Confidence            678999999 669999999999998766  4999999998753