Citrus Sinensis ID: 045783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCHSDCDSSSSVIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrrargaatttAATKQLIEPNGSAARNAaaagkepryrgvrkrpwgrfaaeirdpwkkTRVWLGTFDSAEDAARAYDAAARTlrgpkaktnfpihntnvssyypnnnndpfldqrlygsvfhdiqdqqivnpqrpttssmsstvesfsgprpphppqrsanltdgsrryprtppvvpedchsdcdssssvidddgdiaLSSCrksllpfdlnfpplddvdfngdddlqctalcl
Flexible Loop (DISEMBL)
mrrargaatttaatkqliepngsaarnaaaagkepryrgvrkrpwgrfaaeirdpwkktrVWLGTFDSAEDAARAYDAAARtlrgpkaktnfpihNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESfsgprpphppqrsanltdgsrrYPRTPPVVPEDCHSDCDSSSSVIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL
Low Complexity Region (SEG)
MrrargaatttaatKQLIEPNGSaarnaaaaGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSaedaaraydaaarTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPttssmsstvesfsGPRPPHPPQRSANLTDGSRRYPRTPPVVPEdchsdcdssssvidddgdiALSSCRKSllpfdlnfpplddvdfngdddLQCTALCL
Disordered region (IsUnstruct)
***************************************VRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLR****KTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQ***********************************************************************IALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTAL**
Disordered Region (DISOPRED)
***************************************VRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI************************************************************************************************************RKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL
Disordered Region (DISEMBL)
***********AATKQLIEPNG*****************VRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVN*****************************NLTDGSRRYPRT*****************VIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL
Disordered Region (DISPRO)
********************************KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNV********************************************************************************************DDDGDIALSSCRKSLLPFDLNFPPLDDV*FNGDDDLQCTALCL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCHSDCDSSSSVIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q9LDE4	244	Ethylene-responsive trans	yes	no	0.948	0.909	0.578	6e-47
O80339	225	Ethylene-responsive trans	no	no	0.910	0.946	0.617	8e-47
Q9SXS8	225	Ethylene-responsive trans	N/A	no	0.893	0.928	0.572	3e-43
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.282	0.290	0.772	3e-24
O80340	222	Ethylene-responsive trans	no	no	0.337	0.355	0.683	3e-24
Q40477	225	Ethylene-responsive trans	N/A	no	0.290	0.302	0.764	8e-24
Q94ID6	189	Ethylene-responsive trans	no	no	0.264	0.328	0.806	9e-24
Q9FE67	200	Ethylene-responsive trans	no	no	0.397	0.465	0.571	1e-23
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.363	0.346	0.616	3e-23
Q9C5I3	166	Ethylene-responsive trans	no	no	0.286	0.403	0.731	2e-22

>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1

 Score =  187 bits (475), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 148/256 (57%), Positives = 165/256 (64%), Gaps = 34/256 (13%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MR+ RG++    A              A  + KEPRYRGVRKRPWGRFAAEIRDP KK+R
Sbjct: 1   MRKGRGSSVVGPALPV----------TAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSR 50

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI--------------HNTNVSS-YYPN 105
           VWLGTFDSA DAARAYD AAR LRGPKAKTNFPI              HN N+ S     
Sbjct: 51  VWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQ 110

Query: 106 NNNDPFLDQRLYGSV-FHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTD 164
           N  DPF+D RLYG   F + Q QQI++  RP +SSMSSTV+S SGPRP      S+++  
Sbjct: 111 NQIDPFMDHRLYGGGNFQEQQQQQIIS--RPASSSMSSTVKSCSGPRPMEAAAASSSVAK 168

Query: 165 ---GSRRYPRTPPVVPEDCHSDCDSSSSVIDDDGDIALSSC-RKSLLPFDLNFPPLDDVD 220
                +RYPRTPPV PEDCHSDCDSSSSVIDD  DIA SS  RK+   FDLNFPPLD VD
Sbjct: 169 PLHAIKRYPRTPPVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNFPPLDGVD 228

Query: 221 F--NGDDDLQCTALCL 234
               G DDL CT L L
Sbjct: 229 LFAGGIDDLHCTDLRL 244

Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase.
Arabidopsis thaliana (taxid: 3702)

>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1

 Score =  187 bits (474), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 167/246 (67%), Gaps = 33/246 (13%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MRR RG++           P   AA N +   KE R+RGVRKRPWGRFAAEIRDPWKK R
Sbjct: 1   MRRGRGSSAVAG-------PTVVAAINGSV--KEIRFRGVRKRPWGRFAAEIRDPWKKAR 51

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNT---------NVSSYYPNNNNDPF 111
           VWLGTFDSAE+AARAYD+AAR LRGPKAKTNFPI ++         N       N  DPF
Sbjct: 52  VWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPF 111

Query: 112 LDQRLYGSVFHDIQDQ-QIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYP 170
           +D RL    F D Q Q  IVN  RPT+SSMSSTVESFSGPRP      +      ++RYP
Sbjct: 112 MDHRL----FTDHQQQFPIVN--RPTSSSMSSTVESFSGPRP------TTMKPATTKRYP 159

Query: 171 RTPPVVPEDCHSDCDSSSSVIDDDGDIALSSCRKS-LLPFDLNFPPLDDVD-FNGDDDLQ 228
           RTPPVVPEDCHSDCDSSSSVIDDD DIA SS R++    FDLNFPPLD VD FNG DDL 
Sbjct: 160 RTPPVVPEDCHSDCDSSSSVIDDDDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLH 219

Query: 229 CTALCL 234
           CT L L
Sbjct: 220 CTDLRL 225

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXS8|ERF3_TOBAC Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/250 (57%), Positives = 160/250 (64%), Gaps = 41/250 (16%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MRR R AA     T    EPNGS         KE R+RGVRKRPWGRFAAEIRDPWKKTR
Sbjct: 1   MRRGRAAAAPAPVTG---EPNGSGG------SKEIRFRGVRKRPWGRFAAEIRDPWKKTR 51

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI---HNTNVSSYYPNNNNDPFLDQRLY 117
           VWLGTFDSAEDAARAYDAAAR LRGPKAKTNFP+   H+   +  + N NNDPF+D R Y
Sbjct: 52  VWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLPYAHHHQFNQGH-NPNNDPFVDSRFY 110

Query: 118 GSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVP 177
                  QD  I++ QRPT+SSMSSTVESFSGPR   PP      T  SR+Y R+PPVVP
Sbjct: 111 ------PQDNPIIS-QRPTSSSMSSTVESFSGPR--PPPAPRQQTTASSRKYTRSPPVVP 161

Query: 178 ------------EDCHSDCDSSSSVIDDDGDIALSSCRKSLLPFDLNF-PPLDDVDFNGD 224
                          H DC+  +   +D+ +IA SS RK LL FDLN  PP+DD    G 
Sbjct: 162 DDCHSDCDSSSSVVDHGDCEKEND--NDNDNIASSSFRKPLL-FDLNLPPPMDDA---GA 215

Query: 225 DDLQCTALCL 234
           DDL CTALCL
Sbjct: 216 DDLHCTALCL 225

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 58/66 (87%)

Query: 33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNF 92
          KE  YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AAR  RGPKAKTNF
Sbjct: 23 KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 93 PIHNTN 98
          P+ + N
Sbjct: 83 PLPSEN 88

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana sylvestris (taxid: 4096)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 61/79 (77%)

Query: 15 KQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAAR 74
          K  ++P+ +         KE RYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AAR
Sbjct: 3  KMGLKPDPATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAAR 62

Query: 75 AYDAAARTLRGPKAKTNFP 93
          AYD AAR  RG KAKTNFP
Sbjct: 63 AYDTAARDFRGAKAKTNFP 81

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score =  110 bits (275), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 57/68 (83%)

Query: 33  KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNF 92
           KE  YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AAR  RGPKAKTNF
Sbjct: 23  KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 93  PIHNTNVS 100
           P    N S
Sbjct: 83  PSPTENQS 90

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 50/62 (80%), Positives = 54/62 (87%)

Query: 32 GKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTN 91
           +E  YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+ E+AA AYD AAR LRG KAKTN
Sbjct: 7  AREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTN 66

Query: 92 FP 93
          FP
Sbjct: 67 FP 68

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 67/98 (68%), Gaps = 5/98 (5%)

Query: 19  EPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDA 78
           E  G          KE  +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD 
Sbjct: 15  EGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDT 74

Query: 79  AARTLRGPKAKTNFPI--HNTNVSSYYPNNNNDPFLDQ 114
           AAR  RG KAKTNFP+   +T V+       ND ++++
Sbjct: 75  AAREFRGSKAKTNFPLPGESTTVND---GGENDSYVNR 109

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 24  AARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTL 83
           A  +     KE RYRGVR+RPWGR+AAEIRDP KK RVWLG+F++ E+AARAYD+AA   
Sbjct: 40  AVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRF 99

Query: 84  RGPKAKTNFP-IHNTNVSSYYPNNNN 108
           RG KA TNFP I    +SS  P NNN
Sbjct: 100 RGSKATTNFPLIGYYGISSATPVNNN 125

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5I3|ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 55/67 (82%)

Query: 32 GKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTN 91
          G   RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+ E+AARAYD  A   RG KAKTN
Sbjct: 15 GNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTN 74

Query: 92 FPIHNTN 98
          FP +N N
Sbjct: 75 FPCYNIN 81

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
255580742	228	Ethylene-responsive transcription factor	0.961	0.986	0.637	2e-61
297852766	224	ATERF3/ERF3 [Arabidopsis lyrata subsp. l	0.914	0.955	0.602	3e-52
402810641	219	ERF3 [Populus x canadensis]	0.901	0.963	0.630	4e-52
224056353	219	AP2/ERF domain-containing transcription	0.901	0.963	0.630	8e-52
343796218	223	ethylene response factor ERF4 [Solanum t	0.901	0.946	0.585	9e-51
383875204	219	ethylene response factor 7, partial [Dio	0.850	0.908	0.638	4e-50
292668887	230	AP2 domain class transcription factor [M	0.854	0.869	0.687	2e-49
222427671	231	ethylene responsive transcription factor	0.888	0.900	0.662	2e-48
356567314	212	PREDICTED: ethylene-responsive transcrip	0.888	0.981	0.581	5e-48
449463250	275	PREDICTED: ethylene-responsive transcrip	0.888	0.756	0.604	2e-47

>gi|255580742|ref|XP_002531192.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223529194|gb|EEF31169.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/237 (63%), Positives = 166/237 (70%), Gaps = 12/237 (5%)

Query: 1   MRRARGAATTTAATKQLIEPNGSA-ARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKT 59
           MRR RGAA          +PNGSA A      GKEPRYRGVRKRPWGRFAAEIRDPWKKT
Sbjct: 1   MRRGRGAAVAAKQEAA--QPNGSAPAPQNTPNGKEPRYRGVRKRPWGRFAAEIRDPWKKT 58

Query: 60  RVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGS 119
           RVWLGTFDSAEDAARAYD AARTLRGPKAKTNFPI+ + +S +   N  DPF+D      
Sbjct: 59  RVWLGTFDSAEDAARAYDTAARTLRGPKAKTNFPINASQLSPFAYQNPPDPFVDYHHRVF 118

Query: 120 VFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPED 179
             ++  +   VNPQRPT+SS+SSTVESFSGPRPP        +    R +PRTPPVVPED
Sbjct: 119 TTNNGYESHPVNPQRPTSSSLSSTVESFSGPRPP-----PTTVGSQKRHHPRTPPVVPED 173

Query: 180 CHSDCDSSSSVIDDDGDIALSS--CRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
                  SSS + DDGDIA SS  C +  LPFDLNFPPLD VDF G DDLQCTALCL
Sbjct: 174 -CHSDCDSSSSVVDDGDIASSSSLCYRKPLPFDLNFPPLDQVDFAG-DDLQCTALCL 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852766|ref|XP_002894264.1| ATERF3/ERF3 [Arabidopsis lyrata subsp. lyrata] gi|297340106|gb|EFH70523.1| ATERF3/ERF3 [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 162/244 (66%), Gaps = 30/244 (12%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MRR RG++           P   AA N +   KE R+RGVRKRPWGRFAAEIRDPWKK R
Sbjct: 1   MRRGRGSSAVAG-------PTAVAAINGSV--KETRFRGVRKRPWGRFAAEIRDPWKKAR 51

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNN--------DPFL 112
           VWLGTFDSA +AARAYD+AAR LRGPKAKTNFPI  ++ S     N          DPF+
Sbjct: 52  VWLGTFDSAVEAARAYDSAARNLRGPKAKTNFPIDCSSPSPQQRFNQIQNQNQNQVDPFM 111

Query: 113 DQRLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRT 172
           D RLY         QQ     RPT+SSMSSTVESFSGPRP      +      ++RYPRT
Sbjct: 112 DHRLYAD-----HQQQFPIVNRPTSSSMSSTVESFSGPRP------TTMKPATTKRYPRT 160

Query: 173 PPVVPEDCHSDCDSSSSVIDDDGDIALSSCRKS-LLPFDLNFPPLDDVD-FNGDDDLQCT 230
           PPVVPEDCHSDCDSSSSVI DD DIA SS R++    FDLNFPPLDDVD FNG DDL CT
Sbjct: 161 PPVVPEDCHSDCDSSSSVIVDDDDIASSSRRRNPPFQFDLNFPPLDDVDLFNGSDDLHCT 220

Query: 231 ALCL 234
            L L
Sbjct: 221 DLRL 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810641|gb|AFR11378.1| ERF3 [Populus x canadensis]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 145/230 (63%), Positives = 156/230 (67%), Gaps = 19/230 (8%)

Query: 10  TTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 69
           T   TKQ ++PNGSA +N     KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA
Sbjct: 4   TRTTTKQAVDPNGSATQNMLVIAKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 63

Query: 70  EDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNN---DPFLDQRLYGSVFHDIQD 126
           EDAARAYDAAARTLRG KAKTNFP+  TN    + N N    DPFL             D
Sbjct: 64  EDAARAYDAAARTLRGAKAKTNFPLSTTNQLFNHQNQNQSPTDPFL-------------D 110

Query: 127 QQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCH--SDC 184
              +NPQRPT+SS+SSTVESFSGPRPP P   + +     R +PR PPVVPEDCH   D 
Sbjct: 111 HHSINPQRPTSSSLSSTVESFSGPRPPQPTTTTKSGNGPRRTHPRIPPVVPEDCHSDCDS 170

Query: 185 DSSSSVIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
            SS     D    A S CRK  LPFDLNFPPLD VDF   DDL CTALCL
Sbjct: 171 SSSVVDDRDVASAASSLCRKP-LPFDLNFPPLDQVDFGSGDDLHCTALCL 219

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056353|ref|XP_002298817.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|118486075|gb|ABK94881.1| unknown [Populus trichocarpa] gi|222846075|gb|EEE83622.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  209 bits (532), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/230 (63%), Positives = 155/230 (67%), Gaps = 19/230 (8%)

Query: 10  TTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 69
           T   TKQ ++PNGSA +N     KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA
Sbjct: 4   TRTTTKQAVDPNGSATQNMLVIAKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 63

Query: 70  EDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNN---DPFLDQRLYGSVFHDIQD 126
           EDAARAYDAAARTLRG KAKTNFPI  TN    + N N    DPFL             D
Sbjct: 64  EDAARAYDAAARTLRGAKAKTNFPISTTNQLFNHQNQNQSPTDPFL-------------D 110

Query: 127 QQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCH--SDC 184
              +NPQRPT+SS+SSTVESFSGPRPP P   + +     R +PR PPVVPEDCH   D 
Sbjct: 111 HHSINPQRPTSSSLSSTVESFSGPRPPQPTTTTKSGNGPRRSHPRIPPVVPEDCHSDCDS 170

Query: 185 DSSSSVIDDDGDIALSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
            SS     D    A S CRK  LPFDLNFPPLD VD    DDL CTALCL
Sbjct: 171 SSSVVDDRDVASAASSLCRKP-LPFDLNFPPLDQVDLGSGDDLHCTALCL 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343796218|gb|AEM63545.1| ethylene response factor ERF4 [Solanum tuberosum]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 144/246 (58%), Positives = 167/246 (67%), Gaps = 35/246 (14%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MRR R A    AA    ++P+GS   N      E R+RGVRKRPWGRFAAEIRDPWKKTR
Sbjct: 1   MRRGR-ATPAAAAAAAPVKPDGSGGLN------EIRFRGVRKRPWGRFAAEIRDPWKKTR 53

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI------HNTNVSSYYPNNNNDPFLDQ 114
           VWLGTFDSAEDAA+AYD AARTLRGPKAKTNFP+      H  N S     N ND  +D 
Sbjct: 54  VWLGTFDSAEDAAKAYDTAARTLRGPKAKTNFPLPLYSQHHQFNQSL----NRNDRLVDP 109

Query: 115 RLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPP 174
           RLY       Q+  IV  QRPT+S MSSTVESFSGPRPP   Q++A L    R++PR+PP
Sbjct: 110 RLYS------QEAPIVC-QRPTSSGMSSTVESFSGPRPPR--QQTAVLP--LRKHPRSPP 158

Query: 175 VVPEDCHSDCDSSSSVIDD-----DGDIALSSCRKSLLPFDLNF-PPLDDVDFNGDDDLQ 228
           V P+DC SDCDSSSSV++D       D  +SS  ++ LPFDLNF PP+DDV +   +DL 
Sbjct: 159 VEPDDCRSDCDSSSSVVEDGDCEGGNDNIVSSSFRNPLPFDLNFPPPMDDV-YANSNDLY 217

Query: 229 CTALCL 234
           CTALCL
Sbjct: 218 CTALCL 223

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383875204|gb|AFH56414.1| ethylene response factor 7, partial [Diospyros kaki]

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/216 (63%), Positives = 153/216 (70%), Gaps = 17/216 (7%)

Query: 19  EPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDA 78
           E NGS +R+AA   KE R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDSAEDAARAYD+
Sbjct: 21  EANGSGSRSAA---KEVRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDS 77

Query: 79  AARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTS 138
           AAR LRGPKAKTNFP  +     +   N +DP ++ RLY    H   + QIV  QRPTTS
Sbjct: 78  AARALRGPKAKTNFPPSSPFSPFH--QNPSDPMIEHRLYAP--HHFPEHQIVA-QRPTTS 132

Query: 139 SMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCHSDCDSSSSVIDDDGDIA 198
           S+SSTVESFSGPRPP P          +RR+PRTPPV PEDCHSDCDSSSSV+DD     
Sbjct: 133 SLSSTVESFSGPRPPQP-------AVPARRHPRTPPVSPEDCHSDCDSSSSVVDDGDGDI 185

Query: 199 LSSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
            SS  +  LPFDLN PP  D    GDDDL CT L L
Sbjct: 186 ASSSFRKPLPFDLNLPPPSDQ--AGDDDLFCTDLRL 219

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668887|gb|ADE41098.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/208 (68%), Positives = 159/208 (76%), Gaps = 8/208 (3%)

Query: 32  GKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTN 91
           GKE RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAAR LRGPKAKTN
Sbjct: 26  GKEVRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARILRGPKAKTN 85

Query: 92  FPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPR 151
           F I     + Y  NN  DP ++ +L+GS +   QD   V+PQRP +SS+SSTVESFSGPR
Sbjct: 86  FQISCAYPTFY--NNPTDPAIEAKLFGSGY-GFQDHPAVDPQRPASSSLSSTVESFSGPR 142

Query: 152 PPHPPQRSANLTDGSRRYPRTPPVVPEDCHSDCDSSSSVIDDDGD-IALSSCRKSLLPFD 210
           PP      A      +R PRTPPVVPEDCHSDCDSSSSV++DDGD +A SS RK+ LPFD
Sbjct: 143 PPLQSTTVAAELTRRKRQPRTPPVVPEDCHSDCDSSSSVVEDDGDFVASSSFRKAPLPFD 202

Query: 211 LNFPPLD-DVDFNG---DDDLQCTALCL 234
           LNFPPLD D +  G     DL+CTALCL
Sbjct: 203 LNFPPLDVDGEMGGGVDGQDLRCTALCL 230

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222427671|gb|ACM49845.1| ethylene responsive transcription factor 3a [Prunus salicina]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 147/222 (66%), Positives = 164/222 (73%), Gaps = 14/222 (6%)

Query: 19  EPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDA 78
           EP GS    A     E RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDA
Sbjct: 18  EPAGSRPNIA----NEVRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDA 73

Query: 79  AARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLYGSVFHDIQDQQIVNPQRPTTS 138
           AAR LRGPKAKTNFPI       +Y NN  D  ++ +L+GS +   QD  +V+PQRPT+S
Sbjct: 74  AARILRGPKAKTNFPISCAYPPPFY-NNPTDQAIETKLFGSGY-GFQDHPVVDPQRPTSS 131

Query: 139 SMSSTVESFSGPRPPHPPQRSANLTDGSR--RYPRTPPVVPEDCHSDCDSSSSVIDDDGD 196
           S+SSTVESFSGPRP  PPQ +    + SR  R PRTPPVVPEDCHSDCDSSSSV+ DDGD
Sbjct: 132 SLSSTVESFSGPRP--PPQSTTIAAESSRRKRQPRTPPVVPEDCHSDCDSSSSVVLDDGD 189

Query: 197 IALSSC-RKSLLPFDLNFPP---LDDVDFNGDDDLQCTALCL 234
            A SS  RK+LLPFDLNFPP     ++      DL+CTALCL
Sbjct: 190 FAASSSFRKTLLPFDLNFPPLDEEGELGGGDGQDLRCTALCL 231

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567314|ref|XP_003551866.1| PREDICTED: ethylene-responsive transcription factor 3-like [Glycine max]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/232 (58%), Positives = 151/232 (65%), Gaps = 24/232 (10%)

Query: 6   GAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGT 65
           G   T AA  ++ EP      +     KEPRYRGVRKRPWGRFAAEIRDP KK RVWLGT
Sbjct: 2   GRGGTAAAAVEIAEPG-----SRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGT 56

Query: 66  FDSAEDAARAYDAAARTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQRLY--GSVFHD 123
           FD+AE+AARAYD AARTLRGPKAKTNFP+         P  + DPF D R +       D
Sbjct: 57  FDTAEEAARAYDTAARTLRGPKAKTNFPLSP-------PFYHPDPFSDHRYFDGAGAGED 109

Query: 124 IQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVPEDCHSD 183
            QD      +RPT+S MSSTVESFSGPR   P +    +   +RRYPRTPPVVPEDC SD
Sbjct: 110 FQDH-----RRPTSSGMSSTVESFSGPRAAVPAKAPVIV---NRRYPRTPPVVPEDCRSD 161

Query: 184 CDSSSSVIDDDGDIAL-SSCRKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
           CDSSSSV+DD     + SS R+  LPFDLN  PLDD D    DDL CT LCL
Sbjct: 162 CDSSSSVVDDGDGDNVASSFRREPLPFDLNVLPLDDADV-ATDDLFCTVLCL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463250|ref|XP_004149347.1| PREDICTED: ethylene-responsive transcription factor 7-like [Cucumis sativus]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/240 (60%), Positives = 159/240 (66%), Gaps = 32/240 (13%)

Query: 1   MRRARGAATTTAATKQLIEPNGSAARNAAAAGKEPRYRGVRKRPWGRFAAEIRDPWKKTR 60
           MRR RG A      +      GS          + RYRGVRKRPWGRFAAEIRDPWKKTR
Sbjct: 62  MRRGRGPAVVPPPREPPTPTTGS----------DRRYRGVRKRPWGRFAAEIRDPWKKTR 111

Query: 61  VWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHN-TNVSSY--YPNNNNDPFLDQRLY 117
           VWLGTFDSAEDAARAYD AA TLRG KAKTNFP+ N T+   Y  +P N  DPF D R  
Sbjct: 112 VWLGTFDSAEDAARAYDHAAITLRGSKAKTNFPLPNPTSFFDYPPHPVNAPDPFPDPR-- 169

Query: 118 GSVFHDIQDQQIVNPQRPTTSSMSSTVESFSGPRPPHPPQRSANLTDGSRRYPRTPPVVP 177
                     QI    RPT+SS+SSTVESFSGPRPP     +   T  SRRYPRTPP++P
Sbjct: 170 ---------YQI----RPTSSSLSSTVESFSGPRPPSSSLPALTSTSPSRRYPRTPPLLP 216

Query: 178 EDCHSDCDSSSSVIDDDGDIALSSC---RKSLLPFDLNFPPLDDVDFNGDDDLQCTALCL 234
           EDCHSDCDSSSSVIDD  DIA S     +K+ LPFDLN PP D  DF+  DDL+CTALCL
Sbjct: 217 EDCHSDCDSSSSVIDDGDDIASSPVVPRKKTPLPFDLNIPPSDLFDFSS-DDLRCTALCL 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.572	0.595	0.506	6.2e-30
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.606	0.581	0.462	3.9e-28
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.337	0.355	0.544	1.4e-18
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.260	0.322	0.672	2.2e-18
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.286	0.403	0.611	3.6e-18
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.405	0.475	0.447	4.6e-18
TAIR|locus:2024249	245	ERF10 "ERF domain protein 10"	0.324	0.310	0.558	3.2e-17
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.264	0.335	0.645	4.1e-17
UNIPROTKB|Q5MFV2	235	BIERF2 "BTH-induced ERF transc	0.252	0.251	0.627	1.4e-16
TAIR|locus:2031890	328	ESR1 "ENHANCER OF SHOOT REGENE	0.243	0.173	0.578	9.2e-16

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 79/156 (50%), Positives = 87/156 (55%)

Query:    33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             KE R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS              LRGPKAKTNF
Sbjct:    24 KEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNF 83

Query:    93 PIHNT-----NVSSYYPNNNN----DPFLDQRLYGSVFHDIQDQ-QIVNPQRPXXXXXXX 142
             PI ++     N+      N N    DPF+D RL    F D Q Q  IVN  RP       
Sbjct:    84 PIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRL----FTDHQQQFPIVN--RPTSSSMSS 137

Query:   143 XXXXXXGPRPPHPPQRSANLTDGSRRYPRTPPVVPE 178
                   GPRP     + A     ++RYPRTPPVVPE
Sbjct:   138 TVESFSGPRPT--TMKPAT----TKRYPRTPPVVPE 167

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 75/162 (46%), Positives = 84/162 (51%)

Query:    33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             KEPRYRGVRKRPWGRFAAEIRDP KK+RVWLGTFDS              LRGPKAKTNF
Sbjct:    23 KEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNF 82

Query:    93 PI--------------HNTNVSSYYP--NNNNDPFLDQRLYGSV-FHDIQDQQIVNPQRP 135
             PI              HN N+ S  P   N  DPF+D RLYG   F + Q QQI++  RP
Sbjct:    83 PIDCSPSSPLQPLTYLHNQNLCSP-PVIQNQIDPFMDHRLYGGGNFQEQQQQQIIS--RP 139

Query:   136 XXXXXXXXXXXXXGPRPPHPPQRSANLTDGSRRYPRTPPVVP 177
                          GPRP      S+++        R P   P
Sbjct:   140 ASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTPP 181

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/79 (54%), Positives = 49/79 (62%)

Query:    15 KQLIEPNGSXXXXXXXXGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXX 74
             K  ++P+ +         KE RYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+      
Sbjct:     3 KMGLKPDPATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAAR 62

Query:    75 XXXXXXXTLRGPKAKTNFP 93
                      RG KAKTNFP
Sbjct:    63 AYDTAARDFRGAKAKTNFP 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 41/61 (67%), Positives = 44/61 (72%)

Query:    33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             +E  YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+              LRG KAKTNF
Sbjct:     8 REVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNF 67

Query:    93 P 93
             P
Sbjct:    68 P 68

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 41/67 (61%), Positives = 46/67 (68%)

Query:    32 GKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTN 91
             G   RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+               RG KAKTN
Sbjct:    15 GNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTN 74

Query:    92 FPIHNTN 98
             FP +N N
Sbjct:    75 FPCYNIN 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 43/96 (44%), Positives = 54/96 (56%)

Query:    19 EPNGSXXXXXXXXGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXX 78
             E  G          KE  +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+          
Sbjct:    15 EGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDT 74

Query:    79 XXXTLRGPKAKTNFPIHNTNVSSYYPNNNNDPFLDQ 114
                  RG KAKTNFP+   + ++      ND ++++
Sbjct:    75 AAREFRGSKAKTNFPLPGES-TTVNDGGENDSYVNR 109

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2024249 ERF10 "ERF domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/77 (55%), Positives = 49/77 (63%)

Query:    33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             KE RYRGVR+RPWGR+AAEIRDP KK RVWLG+F++               RG KA TNF
Sbjct:    49 KEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108

Query:    93 P-IHNTNVSSYYPNNNN 108
             P I    +SS  P NNN
Sbjct:   109 PLIGYYGISSATPVNNN 125

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/62 (64%), Positives = 43/62 (69%)

Query:    33 KEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             KE RYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNF
Sbjct:    27 KEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86

Query:    93 PI 94
              +
Sbjct:    87 GV 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

UNIPROTKB|Q5MFV2 BIERF2 "BTH-induced ERF transcriptional factor 2" [Oryza sativa Indica Group (taxid:39946)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 37/59 (62%), Positives = 41/59 (69%)

Query:    35 PRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNFP 93
             P YRGVRKRPWGR+AAEIRDP KK+RVWLGT+D+               RG KAKTNFP
Sbjct:    32 PHYRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFP 90

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2031890 ESR1 "ENHANCER OF SHOOT REGENERATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 33/57 (57%), Positives = 37/57 (64%)

Query:    36 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNF 92
             RYRGVR+RPWGR+AAEIRDP  K R WLGTFD+               RG KA+TNF
Sbjct:    56 RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010084 "specification of organ axis polarity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LDE4	ERF83_ARATH	No assigned EC number	0.5781	0.9487	0.9098	yes	no
Q9SXS8	ERF3_TOBAC	No assigned EC number	0.572	0.8931	0.9288	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__4150__AT1G50640.1 annotation not avaliable (224 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	234
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-31
pfam00847	53	pfam00847, AP2, AP2 domain	1e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (292), Expect = 5e-34
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 36 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH 95
          +YRGVR+RPWG++ AEIRDP K  RVWLGTFD+AE+AARAYD AA   RG  A+ NFP  
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 96 NTNV 99
            + 
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (273), Expect = 4e-31
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query: 35 PRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI 94
           +YRGVR+RPWG++ AEIRDP    R+WLGTFD+AE+AARAYD AA  LRG  A  NFP 
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 95 H 95
           
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 68.4 bits (168), Expect = 1e-15
 Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 4/54 (7%)

Query: 35 PRYRGVRKRP-WGRFAAEIRDPW--KKTRVWLGTFDSAEDAARAYDAAARTLRG 85
            Y+GVR    WGR+ AEIRDP   KK R  LGTF + E+AARA  AA   LRG
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
PHA00280	121	putative NHN endonuclease	99.54
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.16

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.2e-21  Score=138.21  Aligned_cols=61  Identities=64%  Similarity=1.123  Sum_probs=57.7

Q ss_pred             CceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 045783           35 PRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH   95 (234)
Q Consensus        35 SryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s   95 (234)
                      |+|+||+++++|||+|+|+.+..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999955599999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=2.8e-21  Score=139.40  Aligned_cols=63  Identities=63%  Similarity=1.102  Sum_probs=60.6

Q ss_pred             ceeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 045783           36 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIHNTN   98 (234)
Q Consensus        36 ryRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s~y~   98 (234)
                      +|+||+++++|||+|+|+++.+++++|||+|+|+||||+|||.++++++|.++.+|||.++|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999998999999999999999999999999999999999999999984

>PHA00280 putative NHN endonuclease

Probab=99.54  E-value=5.7e-15  Score=120.20  Aligned_cols=66  Identities=14%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             CCchhhccccCCCCCceeeeEeCC-CCcEEEEEeCCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 045783           21 NGSAARNAAAAGKEPRYRGVRKRP-WGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAK   89 (234)
Q Consensus        21 ~~s~~~~~~~~~~~SryRGV~~~~-~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~   89 (234)
                      +.+...++.++.|+|+|+||+|++ .|||+|+|+.  +||+++||.|+++|+|+.||+ ++++|||.+|.
T Consensus        53 ~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         53 KENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            344445566788999999999887 6999999999  999999999999999999997 77899999874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.16  E-value=3.4e-11  Score=83.68  Aligned_cols=52  Identities=35%  Similarity=0.461  Sum_probs=45.6

Q ss_pred             CceeeeEeCC-CCcEEEEEeCCC-C--CcccccCCCCCHHHHHHHHHHHHHHhcCC
Q 045783           35 PRYRGVRKRP-WGRFAAEIRDPW-K--KTRVWLGTFDSAEDAARAYDAAARTLRGP   86 (234)
Q Consensus        35 SryRGV~~~~-~GRW~A~I~~~~-~--~k~i~LGtFdT~EEAArAYD~AA~~l~G~   86 (234)
                      |+|+||++++ .++|+|+|++.. +  +++++||.|+++|||+++|+.+.++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999887 699999999832 1  49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		8e-11
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-10

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 32 GKEPRYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKT 90
           K   YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 91 NFPI 94
          NFP+
Sbjct: 61 NFPL 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 37 YRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXTLRGPKAKTNFPI 94
          YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  NFP+
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-36

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  121 bits (306), Expect = 2e-36
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 36 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI 94
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++AEDAA AYD AA  +RG +A  NFP+
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.7
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	84.11

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.3e-24  Score=156.98  Aligned_cols=60  Identities=68%  Similarity=1.189  Sum_probs=57.0

Q ss_pred             ceeeeEeCCCCcEEEEEeCCCC-CcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 045783           36 RYRGVRKRPWGRFAAEIRDPWK-KTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH   95 (234)
Q Consensus        36 ryRGV~~~~~GRW~A~I~~~~~-~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s   95 (234)
                      +||||+++++|||+|+|+++.+ |++||||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999874 78999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.70  E-value=0.063  Score=40.01  Aligned_cols=27  Identities=22%  Similarity=0.195  Sum_probs=21.9

Q ss_pred             CCCCceeeeEeCC-CCcEEEEEeCCCCCcc
Q 045783           32 GKEPRYRGVRKRP-WGRFAAEIRDPWKKTR   60 (234)
Q Consensus        32 ~~~SryRGV~~~~-~GRW~A~I~~~~~~k~   60 (234)
                      ..+|+|+||+|++ .+.|.|.-.+  +|++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            4679999999987 5999999998  5543

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=84.11  E-value=0.2  Score=40.95  Aligned_cols=38  Identities=8%  Similarity=-0.106  Sum_probs=30.0

Q ss_pred             eeeeEeCCCCcEEEEEeCCCCCcccccCCCCCHHHHHHHHH
Q 045783           37 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD   77 (234)
Q Consensus        37 yRGV~~~~~GRW~A~I~~~~~~k~i~LGtFdT~EEAArAYD   77 (234)
                      ++||.+.+.++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            467755224679999988  5 6788999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  107 bits (270), Expect = 2e-31
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 36 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPI 94
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++AEDAA AYD AA  +RG +A  NFP+
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=5.5e-25  Score=157.68  Aligned_cols=60  Identities=67%  Similarity=1.175  Sum_probs=55.8

Q ss_pred             ceeeeEeCCCCcEEEEEeCCC-CCcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 045783           36 RYRGVRKRPWGRFAAEIRDPW-KKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPIH   95 (234)
Q Consensus        36 ryRGV~~~~~GRW~A~I~~~~-~~k~i~LGtFdT~EEAArAYD~AA~~l~G~~A~tNFp~s   95 (234)
                      .||||+++++|||+|+|+++. +++++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999999999999999864 568899999999999999999999999999999999974