Citrus Sinensis ID: 045784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE
Secondary Structure (PSIPRED)
cEEEEEEEccEEEEEEEccccccccccHHHHHHccEEcccccEEEEcEEEEEEEEEEccEEEEEEEEEEcccccEEEEcHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccEEEEEEEEccccccHccHHHHHHccEEEEcccEEEcccEcccEEEEEEcEEEEEEEEEEEcccccEEEcHHHHHHccccc
Coil and Loop (DISEMBL)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLqgvplivdfyllpfegydvvldtqwlstfglie
Flexible Loop (DISEMBL)
mirvigrlvhkvvtvlidsrrthnfvRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE
Low Complexity Region (SEG)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE
Disordered region (IsUnstruct)
**RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI*
Disordered Region (DISOPRED)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVA**ERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGL**
Disordered Region (DISEMBL)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE
Disordered Region (DISPRO)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
218197921	402	hypothetical protein OsI_22431 [Oryza sa	0.855	0.191	0.436	4e-11
147783182	1360	hypothetical protein VITISV_039388 [Viti	0.988	0.065	0.39	8e-11
147802351	439	hypothetical protein VITISV_013625 [Viti	0.988	0.202	0.393	2e-10
89887334	1359	polyprotein [Primula vulgaris]	0.977	0.064	0.387	3e-10
115487072	461	Os12g0121200 [Oryza sativa Japonica Grou	0.955	0.186	0.375	7e-10
242095940	1437	hypothetical protein SORBIDRAFT_10g02001	0.866	0.054	0.409	8e-10
440577416	267	PH01B031C15.22 [Phyllostachys edulis]	0.833	0.280	0.411	3e-09
356569674	1433	PREDICTED: uncharacterized protein LOC10	0.966	0.060	0.381	6e-09
147767540	1133	hypothetical protein VITISV_006396 [Viti	0.8	0.063	0.426	7e-09
147843077	1366	hypothetical protein VITISV_044100 [Viti	0.977	0.064	0.336	1e-08

>gi|218197921|gb|EEC80348.1| hypothetical protein OsI_22431 [Oryza sativa Indica Group]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 13  VTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPL 62
           ++ L+DS  TH FV  E A +L          NVMVA+G++ +S G C    IK+     
Sbjct: 184 MSALVDSGSTHTFVATEAARRLGLSPTTKSGLNVMVANGDQVTSSGICSGIPIKIDSEDF 243

Query: 63  IVDFYLLPFEGYDVVLDTQWLSTFGLI 89
           I+D Y++P EGYDVVL  QWL T G I
Sbjct: 244 IIDCYVIPLEGYDVVLGVQWLRTLGPI 270

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783182|emb|CAN68669.1| hypothetical protein VITISV_039388 [Vitis vinifera]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 2   IRVIGRLVHKVVTVLIDSRRTHNFVRQELAV-----------KLNVMVASGERFSSLGTC 50
           I V+G+L +K V VLID   THNF+ Q + V           K  VMVA+ E+    G C
Sbjct: 364 ICVMGKLKNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVANREKIECAGQC 423

Query: 51  LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
               + +QG  +  D+Y+LP     +VL  QWL T G IE
Sbjct: 424 RSLTLTIQGYSVTADYYILPVAACQLVLGVQWLETLGPIE 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802351|emb|CAN77123.1| hypothetical protein VITISV_013625 [Vitis vinifera]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 2   IRVIGRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCL 51
           +RV+GRL +K +TVLID   THNF+ Q +            K+ V+VA+ E    +G  L
Sbjct: 275 LRVLGRLKNKYLTVLIDDNNTHNFIDQIVVSRFGLLVVREKKIQVVVANQEWIECMGQFL 334

Query: 52  QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
              + +Q +P+  D+Y+LP     VVL  QWL T G IE
Sbjct: 335 GLTLIIQEIPVTADYYILPMAACQVVLGVQWLETLGSIE 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89887334|gb|ABD78322.1| polyprotein [Primula vulgaris]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 10/98 (10%)

Query: 2   IRVIGRLVHKVVTVLIDSRRTHNFVRQELA--VKLN--------VMVASGERFSSLGTCL 51
           IR +G+L  + V++L+DS  THNF+  +    +KL+        V +A+G++  S GTC 
Sbjct: 291 IRFVGKLKGQKVSILVDSGSTHNFIDPKWVPLLKLSNVQSDIMEVKIANGDKIKSSGTCE 350

Query: 52  QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
           +  + +Q     VDF LLP  GYD+VL   WLS  G+I
Sbjct: 351 KVKLLIQENQFEVDFLLLPLVGYDLVLGVHWLSQLGVI 388

Source: Primula vulgaris

Species: Primula vulgaris

Genus: Primula

Family: Primulaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115487072|ref|NP_001066023.1| Os12g0121200 [Oryza sativa Japonica Group] gi|113648530|dbj|BAF29042.1| Os12g0121200, partial [Oryza sativa Japonica Group]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 2  IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
          I+V  RL  + +  L+DS  THNF+   +A +          L+V VA+G+R  S G C 
Sbjct: 2  IKVWARLGSQELVALLDSGSTHNFINDAIAHQAGVPLQRRPGLSVAVANGDRVPSPGRCP 61

Query: 52 QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
             + +      +DFY LP  GYD+VL  QWL T G
Sbjct: 62 PQRVSIGSHEFDIDFYALPLGGYDIVLGAQWLGTLG 97

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095940|ref|XP_002438460.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor] gi|241916683|gb|EER89827.1| hypothetical protein SORBIDRAFT_10g020018 [Sorghum bicolor]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 13  VTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPL 62
           +T L+D+  THNF+ +  A +          L   VA+GER +  G   Q  I + G   
Sbjct: 348 LTALLDTGSTHNFIAETAATRTGLPVLADPRLTATVANGERIACPGVLRQAPIIIDGEGF 407

Query: 63  IVDFYLLPFEGYDVVLDTQWLSTFGLIE 90
            VD Y+LP  GYD+VL TQWL T G IE
Sbjct: 408 CVDLYVLPLAGYDLVLGTQWLVTLGRIE 435

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440577416|emb|CCI55439.1| PH01B031C15.22 [Phyllostachys edulis]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 15  VLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCLQTLIKLQGVPLIV 64
            L+DS  THNFV  EL  +          L+V VA+G+  +S G C  TLI +     I+
Sbjct: 77  ALVDSGSTHNFVAAELVARVGLSLTPRTGLSVAVANGDHVTSGGICRATLISIDKEDFIL 136

Query: 65  DFYLLPFEGYDVVLDTQWLSTFGLI 89
           DF  +P +G+DVVL  QWL + G I
Sbjct: 137 DFLTIPLDGFDVVLGVQWLGSLGPI 161

Source: Phyllostachys edulis

Species: Phyllostachys edulis

Genus: Phyllostachys

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569674|ref|XP_003553022.1| PREDICTED: uncharacterized protein LOC100788433 [Glycine max]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 3   RVIGRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCLQ 52
           R+ G + H  +TVLIDS  THNF++  LA            L V+V +G   +    C  
Sbjct: 351 RLFGYINHTRITVLIDSGSTHNFLQPRLATFLHLPTVPTNPLRVLVGNGAVLTCTHLCPD 410

Query: 53  TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
           T I LQ     + F+LLP  G DV+L  QWL   G I
Sbjct: 411 TTISLQSHHFTLTFHLLPISGADVILGIQWLKLLGPI 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767540|emb|CAN66709.1| hypothetical protein VITISV_006396 [Vitis vinifera]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 6    GRLVHKVVTVLIDSRRTHNFVRQELAV----------KLNVMVASGERFSSLGTCLQTLI 55
            G  + + + VLIDS  THNF+   +A           K+ VMVASGE+  SLG+C    +
Sbjct: 1052 GSFLFQPMEVLIDSGSTHNFISVLVAECVGFNLKQDRKMEVMVASGEKLVSLGSCSNVQL 1111

Query: 56   KLQGVPLIVDFYLLPFEGYDVV 77
            KLQ V ++V F +LP E +DVV
Sbjct: 1112 KLQKVTIVVKFLVLPLEDFDVV 1133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843077|emb|CAN83300.1| hypothetical protein VITISV_044100 [Vitis vinifera]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 2   IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVK----------LNVMVASGERFSSLGTCL 51
           +R +G +  + V +L+D+  THNF+   +  +          L+V VA+G+   S G+C 
Sbjct: 329 MRFLGHICGRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCA 388

Query: 52  QTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
              + +QG    +DFY+L   G D+VL  QWL T G I
Sbjct: 389 AVPLHMQGNLYTIDFYILTLGGCDIVLGVQWLQTLGPI 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2091793	421	AT3G29750 [Arabidopsis thalian	0.877	0.187	0.391	3.6e-05

TAIR|locus:2091793 AT3G29750 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 36/92 (39%), Positives = 46/92 (50%)

Query:     8 LVHKVVTVLIDSRRTHNFVRQELAVKLNV--------MVASGER--FSSLGTCLQTLIKL 57
             L HKVV V IDS  T NF+  ELA  L +         V  G+R    S+GTCL   + +
Sbjct:   131 LDHKVV-VAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWV 189

Query:    58 QGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG 87
             Q V +  +F LL       DV+L  +WLS  G
Sbjct:   190 QEVEITENFLLLDLAKTDVDVILGYEWLSKLG 221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.39    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  101 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.51u 0.18s 8.69t   Elapsed:  00:00:00
  Total cpu time:  8.51u 0.18s 8.69t   Elapsed:  00:00:00
  Start:  Fri May 10 05:14:12 2013   End:  Fri May 10 05:14:12 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00008595001 SubName- Full=Chromosome chr6 scaffold_202, whole genome shotgun sequence; (150 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
cd00303	92	cd00303, retropepsin_like, Retropepsins; pepsin-li	1e-11
pfam08284	135	pfam08284, RVP_2, Retroviral aspartyl protease	6e-06

>gnl|CDD|133136 cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases

 Score = 55.0 bits (133), Expect = 1e-11
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 4  VIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN-----------VMVASGERFSSLGTCLQ 52
          + G++    V  L+DS  + NF+ + LA KL            V  A+G    +LG  L 
Sbjct: 1  LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKTLGVILP 60

Query: 53 TLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL 83
            I + G    VDFY+L    YDV+L   WL
Sbjct: 61 VTIGIGGKTFTVDFYVLDLLSYDVILGRPWL 91

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 92

>gnl|CDD|116868 pfam08284, RVP_2, Retroviral aspartyl protease

 Score = 41.3 bits (97), Expect = 6e-06
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 8   LVHKV-VTVLIDSRRTHNFVRQELA-------VKLNV--MVAS-GERFSSLGTCLQTLIK 56
           LV+ +  TVL DS  +H+F+ Q            L    +V S G   ++   C    I+
Sbjct: 27  LVNSIPATVLFDSGASHSFISQAFVGRHGLPLEALRTPMLVHSPGGDMTATHRCPSVNIE 86

Query: 57  LQGVPLIVDFYLLPFEGYDVVLDTQWLSTF 86
           +QGV    +  LL  +  DV+L   WL+  
Sbjct: 87  IQGVDFPANLILLDSKDLDVILGMDWLAQH 116

Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	99.96
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	99.93
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	99.88
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	99.84
cd05480	103	NRIP_C NRIP_C; putative nuclear receptor interacti	99.78
PF13650	90	Asp_protease_2: Aspartyl protease	99.76
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	99.74
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	99.74
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	99.69
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	99.67
cd00303	92	retropepsin_like Retropepsins; pepsin-like asparta	99.63
KOG0012	380	consensus DNA damage inducible protein [Replicatio	99.52
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	99.5
PF02160	201	Peptidase_A3: Cauliflower mosaic virus peptidase (	99.5
TIGR03698	107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	99.48
PF12384	177	Peptidase_A2B: Ty3 transposon peptidase; InterPro:	99.48
cd06094	89	RP_Saci_like RP_Saci_like, retropepsin family. Ret	99.35
COG3577	215	Predicted aspartyl protease [General function pred	99.34
cd05481	93	retropepsin_like_LTR_1 Retropepsins_like_LTR; peps	99.29
cd05482	87	HIV_retropepsin_like Retropepsins, pepsin-like asp	98.74
COG5550	125	Predicted aspartyl protease [Posttranslational mod	98.38
PF05585	164	DUF1758: Putative peptidase (DUF1758); InterPro: I	98.29
PF05618	138	Zn_protease: Putative ATP-dependant zinc protease;	97.56
PF12382	137	Peptidase_A2E: Retrotransposon peptidase; InterPro	97.13
COG4067	162	Uncharacterized protein conserved in archaea [Post	97.12
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	96.15
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	95.9
PF03539	163	Spuma_A9PTase: Spumavirus aspartic protease (A9);	95.38
cd05477	318	gastricsin Gastricsins, asparate proteases produce	95.38
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	95.2
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	95.17
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	95.09
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	94.91
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	94.7
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	94.63
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	94.63
PTZ00147	453	plasmepsin-1; Provisional	94.52
PTZ00013	450	plasmepsin 4 (PM4); Provisional	94.45
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	94.44
PTZ00147	453	plasmepsin-1; Provisional	94.39
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	93.76
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	93.33
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	93.32
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	92.9
cd05487	326	renin_like Renin stimulates production of angioten	92.47
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	92.03
PTZ00013	450	plasmepsin 4 (PM4); Provisional	91.49
cd05477	318	gastricsin Gastricsins, asparate proteases produce	91.12
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	90.97
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	90.84
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	90.13
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	89.62
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	89.36
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	89.36
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	89.24
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	89.2
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	88.73
PTZ00165	482	aspartyl protease; Provisional	88.09
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	88.04

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=99.96  E-value=9.6e-29  Score=156.56  Aligned_cols=89  Identities=33%  Similarity=0.567  Sum_probs=79.4

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhhee---------eEEe-cCCCeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL---------NVMV-ASGERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l---------~v~~-a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      +|+....|+++|+.+||||||||||||+++|+++         .+.+ ++|+...+.+.|..+++.++++.+..+|.|++
T Consensus        21 vi~g~~~I~~~~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~~~~~~~~~~~i~g~~~~~dl~vl~  100 (135)
T PF08284_consen   21 VITGTFLINSIPASVLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINCEGVCPDVPLSIQGHEFVVDLLVLD  100 (135)
T ss_pred             eEEEEEEeccEEEEEEEecCCCcEEccHHHHHhcCCEEEEccCeeEEecccccccccceeeeEEEEECCeEEEeeeEEec
Confidence            3677889999999999999999999999999998         2222 45666777888999999999999999999999


Q ss_pred             CCCceEEeCcchhhhcCCC
Q 045784           71 FEGYDVVLDTQWLSTFGLI   89 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p~   89 (90)
                      +.++|+|||||||++|+|+
T Consensus       101 l~~~DvILGm~WL~~~~~~  119 (135)
T PF08284_consen  101 LGGYDVILGMDWLKKHNPV  119 (135)
T ss_pred             ccceeeEeccchHHhCCCE
Confidence            9999999999999999984

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=99.93  E-value=1.2e-25  Score=140.39  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhheee----------EEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN----------VMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~----------v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      .|+++++|||+++.+|+||||++|||++++|+++.          +.+++++.....+.+..+++++++..+..+|.|+|
T Consensus        16 ~~~v~~~Ing~~~~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~~~~~Vl~   95 (124)
T cd05479          16 MLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQVKIGNLFLPCSFTVLE   95 (124)
T ss_pred             EEEEEEEECCEEEEEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEEeEEEEEEEEECCEEeeeEEEEEC
Confidence            37899999999999999999999999999999982          34455344566778888899999999999999999


Q ss_pred             CCCceEEeCcchhhhcCC
Q 045784           71 FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p   88 (90)
                      ..++|+|||||||++++.
T Consensus        96 ~~~~d~ILG~d~L~~~~~  113 (124)
T cd05479          96 DDDVDFLIGLDMLKRHQC  113 (124)
T ss_pred             CCCcCEEecHHHHHhCCe
Confidence            999999999999999985

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=99.88  E-value=3.6e-22  Score=118.36  Aligned_cols=81  Identities=21%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccHHhhhee----------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCC
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPF   71 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~   71 (90)
                      +++++.|||+++.+|+||||++|+|+++.++++          .++.|||+.+.+.|.+ .+++.+++..+..+|+|++.
T Consensus         1 ~~~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~~~G~~-~~~v~~~~~~~~~~~~v~~~   79 (91)
T cd05484           1 KTVTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLSVLGQI-LVTVKYGGKTKVLTLYVVKN   79 (91)
T ss_pred             CEEEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEeeEeEEE-EEEEEECCEEEEEEEEEEEC
Confidence            368999999999999999999999999999877          7889999999999988 78999999999999999999


Q ss_pred             CCceEEeCcchhh
Q 045784           72 EGYDVVLDTQWLS   84 (90)
Q Consensus        72 ~~~dvILG~~wL~   84 (90)
                      . ++.|||++||.
T Consensus        80 ~-~~~lLG~~wl~   91 (91)
T cd05484          80 E-GLNLLGRDWLD   91 (91)
T ss_pred             C-CCCccChhhcC
Confidence            8 99999999985

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.84  E-value=2.4e-20  Score=116.51  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhheeeE---------EecCC-CeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNV---------MVASG-ERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~v---------~~a~G-~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      +++|++++||++++|++||||.+|.||+++|+|+++         ..+-| +.....|+++.+++.+++..+++.|.|++
T Consensus        24 mLyI~~~ing~~vkA~VDtGAQ~tims~~~a~r~gL~~lid~r~~g~a~GvG~~~i~G~Ih~~~l~ig~~~~~~s~~Vle  103 (124)
T PF09668_consen   24 MLYINCKINGVPVKAFVDTGAQSTIMSKSCAERCGLMRLIDKRFAGVAKGVGTQKILGRIHSVQLKIGGLFFPCSFTVLE  103 (124)
T ss_dssp             --EEEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEEGGG-EE-------EEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred             eEEEEEEECCEEEEEEEeCCCCccccCHHHHHHcCChhhccccccccccCCCcCceeEEEEEEEEEECCEEEEEEEEEeC
Confidence            368999999999999999999999999999999811         11222 44567789999999999999999999999


Q ss_pred             CCCceEEeCcchhhhcCC
Q 045784           71 FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p   88 (90)
                      -...|++||.|||++|+-
T Consensus       104 ~~~~d~llGld~L~~~~c  121 (124)
T PF09668_consen  104 DQDVDLLLGLDMLKRHKC  121 (124)
T ss_dssp             TSSSSEEEEHHHHHHTT-
T ss_pred             CCCcceeeeHHHHHHhCc
Confidence            889999999999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein

Probab=99.78  E-value=1.8e-18  Score=103.77  Aligned_cols=85  Identities=14%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhheeeEE----------ecC--CCeeeeeceeeeeEEEEeceeEEeeEEEcCC
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVM----------VAS--GERFSSLGTCLQTLIKLQGVPLIVDFYLLPF   71 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~v~----------~a~--G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~   71 (90)
                      +.+++||+|++|++||||.++.||+++|+|+.+.          .|-  |++..+.|+++.+++.+++..+++.|.|++.
T Consensus         1 vnCk~nG~~vkAfVDsGaQ~timS~~caercgL~r~v~~~r~~g~A~gvgt~~kiiGrih~~~ikig~~~~~CSftVld~   80 (103)
T cd05480           1 VSCQCAGKELRALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEAPSLPTSVKVIGQIERLVLQLGQLTVECSAQVVDD   80 (103)
T ss_pred             CceeECCEEEEEEEecCCchhhcCHHHHHHcChHhhhhhccccccccCCCcceeEeeEEEEEEEEeCCEEeeEEEEEEcC
Confidence            4689999999999999999999999999999221          122  4456788999999999999999999999999


Q ss_pred             CCceEEeCcchhhhcCC
Q 045784           72 EGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        72 ~~~dvILG~~wL~~~~p   88 (90)
                      ...|++||.|-|++|+-
T Consensus        81 ~~~d~llGLdmLkrhqc   97 (103)
T cd05480          81 NEKNFSLGLQTLKSLKC   97 (103)
T ss_pred             CCcceEeeHHHHhhcce
Confidence            99999999999999973

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>PF13650 Asp_protease_2: Aspartyl protease

Probab=99.76  E-value=1.9e-17  Score=96.46  Aligned_cols=77  Identities=27%  Similarity=0.304  Sum_probs=64.4

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee-----------eEEecCCCeeeeeceeeeeEEEEeceeE-EeeEEEcC-
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVPL-IVDFYLLP-   70 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~-~~~~~v~~-   70 (90)
                      |++++||+++.+|+||||+.++|++++++++           .+..++|+.....+...  .+++++..+ ..++.+.+ 
T Consensus         1 V~v~vng~~~~~liDTGa~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~i~ig~~~~~~~~~~v~~~   78 (90)
T PF13650_consen    1 VPVKVNGKPVRFLIDTGASISVISRSLAKKLGLKPRPKSVPISVSGAGGSVTVYRGRVD--SITIGGITLKNVPFLVVDL   78 (90)
T ss_pred             CEEEECCEEEEEEEcCCCCcEEECHHHHHHcCCCCcCCceeEEEEeCCCCEEEEEEEEE--EEEECCEEEEeEEEEEECC
Confidence            5789999999999999999999999999998           34567787444344443  688999887 57999999 


Q ss_pred             CCCceEEeCcch
Q 045784           71 FEGYDVVLDTQW   82 (90)
Q Consensus        71 ~~~~dvILG~~w   82 (90)
                      ...+|.|||+||
T Consensus        79 ~~~~~~iLG~df   90 (90)
T PF13650_consen   79 GDPIDGILGMDF   90 (90)
T ss_pred             CCCCEEEeCCcC
Confidence            667999999998

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=99.74  E-value=2.6e-17  Score=102.48  Aligned_cols=86  Identities=20%  Similarity=0.243  Sum_probs=70.1

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccHHhhhee-----------eEEecCCCeeeeeceeeeeEEEEeceeEE-eeEEEc
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVPLI-VDFYLL   69 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-~~~~v~   69 (90)
                      ++++++|||+++.+|+||||++++|++++|+++           .+..|||......  ..--.+++++..+. .++.|+
T Consensus        12 ~~v~~~InG~~~~flVDTGAs~t~is~~~A~~Lgl~~~~~~~~~~~~ta~G~~~~~~--~~l~~l~iG~~~~~nv~~~v~   89 (121)
T TIGR02281        12 FYATGRVNGRNVRFLVDTGATSVALNEEDAQRLGLDLNRLGYTVTVSTANGQIKAAR--VTLDRVAIGGIVVNDVDAMVA   89 (121)
T ss_pred             EEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCcccCCceEEEEeCCCcEEEEE--EEeCEEEECCEEEeCcEEEEe
Confidence            789999999999999999999999999999999           3456677643222  22235889999877 789999


Q ss_pred             CCCC-ceEEeCcchhhhcCCC
Q 045784           70 PFEG-YDVVLDTQWLSTFGLI   89 (90)
Q Consensus        70 ~~~~-~dvILG~~wL~~~~p~   89 (90)
                      |... .+.+|||+||+++.++
T Consensus        90 ~~~~~~~~LLGm~fL~~~~~~  110 (121)
T TIGR02281        90 EGGALSESLLGMSFLNRLSRF  110 (121)
T ss_pred             CCCcCCceEcCHHHHhccccE
Confidence            9874 5899999999998754

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.74  E-value=2.7e-17  Score=98.38  Aligned_cols=83  Identities=20%  Similarity=0.301  Sum_probs=72.4

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee--------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCc
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL--------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGY   74 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l--------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~   74 (90)
                      +++.++||+++.|||||||+.|+|+++.+.+.        .+..++|.. ...+.. .+++.+++..+...|+|.+....
T Consensus         7 ~i~v~i~g~~i~~LlDTGA~vsiI~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~-~~~v~~~~~~~~~~~~v~~~~~~   84 (100)
T PF00077_consen    7 YITVKINGKKIKALLDTGADVSIISEKDWKKLGPPPKTSITVRGAGGSS-SILGST-TVEVKIGGKEFNHTFLVVPDLPM   84 (100)
T ss_dssp             EEEEEETTEEEEEEEETTBSSEEESSGGSSSTSSEEEEEEEEEETTEEE-EEEEEE-EEEEEETTEEEEEEEEESSTCSS
T ss_pred             eEEEeECCEEEEEEEecCCCcceecccccccccccccCCceeccCCCcc-eeeeEE-EEEEEEECccceEEEEecCCCCC
Confidence            57899999999999999999999999999877        566677776 555554 68899999999999999998778


Q ss_pred             eEEeCcchhhhcCC
Q 045784           75 DVVLDTQWLSTFGL   88 (90)
Q Consensus        75 dvILG~~wL~~~~p   88 (90)
                      | |||.|||++++.
T Consensus        85 ~-ILG~D~L~~~~~   97 (100)
T PF00077_consen   85 N-ILGRDFLKKLNA   97 (100)
T ss_dssp             E-EEEHHHHTTTTC
T ss_pred             C-EeChhHHHHcCC
Confidence            8 999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=99.69  E-value=4.5e-16  Score=91.43  Aligned_cols=82  Identities=23%  Similarity=0.297  Sum_probs=68.2

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhhee----------eEEecCCCeeeeeceeeeeEEEEeceeEE-eeEEEc
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPLI-VDFYLL   69 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-~~~~v~   69 (90)
                      .+.+++++|++++.+|+||||+.++|++++++++          .+..++|........  --++.+++..+. ..+.++
T Consensus         2 ~~~v~v~i~~~~~~~llDTGa~~s~i~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~--~~~i~ig~~~~~~~~~~v~   79 (96)
T cd05483           2 HFVVPVTINGQPVRFLLDTGASTTVISEELAERLGLPLTLGGKVTVQTANGRVRAARVR--LDSLQIGGITLRNVPAVVL   79 (96)
T ss_pred             cEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCccCCCcEEEEecCCCccceEEE--cceEEECCcEEeccEEEEe
Confidence            3789999999999999999999999999999976          455566765544433  346889999876 689999


Q ss_pred             CCCC--ceEEeCcchhh
Q 045784           70 PFEG--YDVVLDTQWLS   84 (90)
Q Consensus        70 ~~~~--~dvILG~~wL~   84 (90)
                      +...  .|.|||+|||+
T Consensus        80 d~~~~~~~gIlG~d~l~   96 (96)
T cd05483          80 PGDALGVDGLLGMDFLR   96 (96)
T ss_pred             CCcccCCceEeChHHhC
Confidence            9987  99999999985

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=99.67  E-value=5.8e-16  Score=91.02  Aligned_cols=79  Identities=24%  Similarity=0.305  Sum_probs=62.5

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee-------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceE
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDV   76 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dv   76 (90)
                      +.++|||+|+.+|+||||+.+.|+++.++++       .+..++|..........+ .+.+++++....+.+.+- ..+.
T Consensus         1 ~~v~InG~~~~fLvDTGA~~tii~~~~a~~~~~~~~~~~v~gagG~~~~~v~~~~~-~v~vg~~~~~~~~~v~~~-~~~~   78 (86)
T cd06095           1 VTITVEGVPIVFLVDTGATHSVLKSDLGPKQELSTTSVLIRGVSGQSQQPVTTYRT-LVDLGGHTVSHSFLVVPN-CPDP   78 (86)
T ss_pred             CEEEECCEEEEEEEECCCCeEEECHHHhhhccCCCCcEEEEeCCCcccccEEEeee-EEEECCEEEEEEEEEEcC-CCCc
Confidence            4689999999999999999999999999984       677788865111111111 588999999988988884 3699


Q ss_pred             EeCcchhh
Q 045784           77 VLDTQWLS   84 (90)
Q Consensus        77 ILG~~wL~   84 (90)
                      |||||||+
T Consensus        79 lLG~dfL~   86 (86)
T cd06095          79 LLGRDLLS   86 (86)
T ss_pred             EechhhcC
Confidence            99999985

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases

Probab=99.63  E-value=8.8e-15  Score=81.96  Aligned_cols=81  Identities=37%  Similarity=0.619  Sum_probs=67.1

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee-----------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCC
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFE   72 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~   72 (90)
                      +.+.++|+++.+|+|+||++++++.++++++           .+..++|......+.+..+.+.+++..+...|.+.+..
T Consensus         1 ~~~~~~~~~~~~liDtgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   80 (92)
T cd00303           1 LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLDLL   80 (92)
T ss_pred             CEEEECCEEEEEEEcCCCcccccCHHHHHHcCCCcccCCCceEEEecCCCEeccCcEEEEEEEEeCCEEEEEEEEEEcCC
Confidence            3577899999999999999999999999875           33455565555444445678888899999999999999


Q ss_pred             CceEEeCcchhh
Q 045784           73 GYDVVLDTQWLS   84 (90)
Q Consensus        73 ~~dvILG~~wL~   84 (90)
                      .+|+|||++||+
T Consensus        81 ~~~~ilG~~~l~   92 (92)
T cd00303          81 SYDVILGRPWLE   92 (92)
T ss_pred             CcCEEecccccC
Confidence            999999999985

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=99.52  E-value=2.7e-14  Score=101.67  Aligned_cols=88  Identities=18%  Similarity=0.177  Sum_probs=77.4

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhheeeEE---------ecC-CCeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVM---------VAS-GERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~v~---------~a~-G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      +++|.++|||+|++|++||||..+.||.+||+|+.+.         .|- .....+.|+++.+.+++++..+.+.|.|++
T Consensus       235 ML~iN~~ing~~VKAfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~Ih~~~lki~~~~l~c~ftV~d  314 (380)
T KOG0012|consen  235 MLYINCEINGVPVKAFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGRIHQAQLKIEDLYLPCSFTVLD  314 (380)
T ss_pred             EEEEEEEECCEEEEEEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccceeEEEEEEeccEeeccceEEec
Confidence            3689999999999999999999999999999999221         122 235677889999999999999999999999


Q ss_pred             CCCceEEeCcchhhhcCC
Q 045784           71 FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p   88 (90)
                      -...|+.||.+-|++|+-
T Consensus       315 ~~~~d~llGLd~Lrr~~c  332 (380)
T KOG0012|consen  315 RRDMDLLLGLDMLRRHQC  332 (380)
T ss_pred             CCCcchhhhHHHHHhccc
Confidence            999999999999999973

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=99.50  E-value=6.3e-14  Score=79.99  Aligned_cols=51  Identities=29%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhhee-----------eEEecCCCeeeeeceee
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCL   51 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-----------~v~~a~G~~~~~~~~~~   51 (90)
                      +|++++.|+|+++.+|+||||++|||++++|+++           .+++|||+...+.+...
T Consensus         8 ~~~v~~~I~g~~~~alvDtGat~~fis~~~a~rLgl~~~~~~~~~~v~~a~g~~~~~~g~~~   69 (72)
T PF13975_consen    8 LMYVPVSIGGVQVKALVDTGATHNFISESLAKRLGLPLEKPPSPIRVKLANGSVIEIRGVAE   69 (72)
T ss_pred             EEEEEEEECCEEEEEEEeCCCcceecCHHHHHHhCCCcccCCCCEEEEECCCCccccceEEE
Confidence            4889999999999999999999999999999998           67889998887766554

>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.50  E-value=2e-13  Score=91.24  Aligned_cols=79  Identities=13%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             EEEEEEEcCCCCcccccHHhhhe-----e----eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeCcc
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVK-----L----NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQ   81 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~-----l----~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG~~   81 (90)
                      ..+.+++||||+.+.+++...-.     .    .++.||++......++.+..+.++++.|..++.-.--.+.|+|||++
T Consensus        19 ~~~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~~~~i~~~~~~~~i~I~~~~F~IP~iYq~~~g~d~IlG~N   98 (201)
T PF02160_consen   19 FNYHCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGSIIQINKKAKNGKIQIADKIFRIPTIYQQESGIDIILGNN   98 (201)
T ss_pred             EEEEEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCCceEEEEEecCceEEEccEEEeccEEEEecCCCCEEecch
Confidence            66789999999999988776633     2    78899999888889999999999999999887666668999999999


Q ss_pred             hhhhcCCC
Q 045784           82 WLSTFGLI   89 (90)
Q Consensus        82 wL~~~~p~   89 (90)
                      |++.++|.
T Consensus        99 F~r~y~Pf  106 (201)
T PF02160_consen   99 FLRLYEPF  106 (201)
T ss_pred             HHHhcCCc
Confidence            99999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family

Probab=99.48  E-value=6.8e-13  Score=81.00  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=60.9

Q ss_pred             EEEEEEEcCCCCccc-ccHHhhhee--------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeCcc
Q 045784           11 KVVTVLIDSRRTHNF-VRQELAVKL--------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQ   81 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~-i~~~~a~~l--------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG~~   81 (90)
                      .++.+|+||||+..+ ++++.|+++        .+.+|||+.....-  ....+.+++.+....+.+.+..+ +.+|||.
T Consensus        15 ~~v~~LVDTGat~~~~l~~~~a~~lgl~~~~~~~~~tA~G~~~~~~v--~~~~v~igg~~~~~~v~~~~~~~-~~LLG~~   91 (107)
T TIGR03698        15 MEVRALVDTGFSGFLLVPPDIVNKLGLPELDQRRVYLADGREVLTDV--AKASIIINGLEIDAFVESLGYVD-EPLLGTE   91 (107)
T ss_pred             eEEEEEEECCCCeEEecCHHHHHHcCCCcccCcEEEecCCcEEEEEE--EEEEEEECCEEEEEEEEecCCCC-ccEecHH
Confidence            489999999999998 999999999        77889997655442  34578889988766666666655 8999999


Q ss_pred             hhhhcCC
Q 045784           82 WLSTFGL   88 (90)
Q Consensus        82 wL~~~~p   88 (90)
                      ||++++.
T Consensus        92 ~L~~l~l   98 (107)
T TIGR03698        92 LLEGLGI   98 (107)
T ss_pred             HHhhCCE
Confidence            9999874

Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.

>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.48  E-value=4e-13  Score=87.14  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=71.4

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhheeeEEec----------C-CCeeeeeceeeeeEEEEeceeEEeeEEEc
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVA----------S-GERFSSLGTCLQTLIKLQGVPLIVDFYLL   69 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~v~~a----------~-G~~~~~~~~~~~~~i~i~~~~~~~~~~v~   69 (90)
                      |..+.-.++|.++.+|+||||-.|||+.+.+++|.+...          . +....+.. ...+++.+++..+...++|+
T Consensus        34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~di~~kL~L~~~~app~~fRG~vs~~~~~tsE-Av~ld~~i~n~~i~i~aYV~  112 (177)
T PF12384_consen   34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSDIVEKLELPTHDAPPFRFRGFVSGESATTSE-AVTLDFYIDNKLIDIAAYVT  112 (177)
T ss_pred             EEEEEEeecCcEEEEEEeCCCccceeehhhHHhhCCccccCCCEEEeeeccCCceEEEE-eEEEEEEECCeEEEEEEEEe
Confidence            346778899999999999999999999999999933322          2 23333333 34688999999999999999


Q ss_pred             CCCCceEEeCcchhhhcCC
Q 045784           70 PFEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        70 ~~~~~dvILG~~wL~~~~p   88 (90)
                      +..++|+|+|.|.|++|..
T Consensus       113 d~m~~dlIIGnPiL~ryp~  131 (177)
T PF12384_consen  113 DNMDHDLIIGNPILDRYPT  131 (177)
T ss_pred             ccCCcceEeccHHHhhhHH
Confidence            9999999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].

>cd06094 RP_Saci_like RP_Saci_like, retropepsin family

Probab=99.35  E-value=5.3e-12  Score=74.64  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=63.8

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee------eEEecCCCeeeeeceeeeeEEEEece-eEEeeEEEcCCCCceEEeCcchh
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL------NVMVASGERFSSLGTCLQTLIKLQGV-PLIVDFYLLPFEGYDVVLDTQWL   83 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l------~v~~a~G~~~~~~~~~~~~~i~i~~~-~~~~~~~v~~~~~~dvILG~~wL   83 (90)
                      -...+|+||||.+|.|.+...++.      .++.|||+.+.+.|.. .+.+.+|.. ++.-.|.|.+..  ..|||.|||
T Consensus         8 s~~~fLVDTGA~vSviP~~~~~~~~~~~~~~l~AANgt~I~tyG~~-~l~ldlGlrr~~~w~FvvAdv~--~pIlGaDfL   84 (89)
T cd06094           8 SGLRFLVDTGAAVSVLPASSTKKSLKPSPLTLQAANGTPIATYGTR-SLTLDLGLRRPFAWNFVVADVP--HPILGADFL   84 (89)
T ss_pred             CCcEEEEeCCCceEeeccccccccccCCceEEEeCCCCeEeeeeeE-EEEEEcCCCcEEeEEEEEcCCC--cceecHHHH
Confidence            346899999999999999998883      7889999999999865 678888875 799999998875  479999999


Q ss_pred             hhcC
Q 045784           84 STFG   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      ++|+
T Consensus        85 ~~~~   88 (89)
T cd06094          85 QHYG   88 (89)
T ss_pred             HHcC
Confidence            9986

Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified

>COG3577 Predicted aspartyl protease [General function prediction only]

Probab=99.34  E-value=3.8e-12  Score=85.12  Aligned_cols=85  Identities=22%  Similarity=0.253  Sum_probs=70.3

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccHHhhhee-----------eEEecCCCeeeeeceeeeeEEEEeceeEE-eeEEEc
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-----------NVMVASGERFSSLGTCLQTLIKLQGVPLI-VDFYLL   69 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-~~~~v~   69 (90)
                      |...++|||+++.+|+|||||.-.++++-|+|+           .+.+|||+.....-..  -.+.|++.+.. .+..|.
T Consensus       106 F~a~~~VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~l~y~~~v~TANG~~~AA~V~L--d~v~IG~I~~~nV~A~V~  183 (215)
T COG3577         106 FEANGRVNGKKVDFLVDTGATSVALNEEDARRLGIDLNSLDYTITVSTANGRARAAPVTL--DRVQIGGIRVKNVDAMVA  183 (215)
T ss_pred             EEEEEEECCEEEEEEEecCcceeecCHHHHHHhCCCccccCCceEEEccCCccccceEEe--eeEEEccEEEcCchhhee
Confidence            568899999999999999999999999999999           6788999765443333  25788888876 688999


Q ss_pred             CCCC-ceEEeCcchhhhcCC
Q 045784           70 PFEG-YDVVLDTQWLSTFGL   88 (90)
Q Consensus        70 ~~~~-~dvILG~~wL~~~~p   88 (90)
                      +.+. -...|||+||++.+-
T Consensus       184 ~~g~L~~sLLGMSfL~rL~~  203 (215)
T COG3577         184 EDGALDESLLGMSFLNRLSG  203 (215)
T ss_pred             cCCccchhhhhHHHHhhccc
Confidence            7664 669999999998763

>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats

Probab=99.29  E-value=4e-11  Score=71.54  Aligned_cols=74  Identities=15%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             EEECC-EEEEEEEcCCCCcccccHHhhhee-------------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCC
Q 045784            6 GRLVH-KVVTVLIDSRRTHNFVRQELAVKL-------------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPF   71 (90)
Q Consensus         6 ~~i~~-~~~~aLiDsGA~~~~i~~~~a~~l-------------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~   71 (90)
                      -.+|+ +++++++||||+.|.|+.+..+++             .++.+||+.+...|.+ .+++.+++..+..+|+|++.
T Consensus         3 ~~i~g~~~v~~~vDtGA~vnllp~~~~~~l~~~~~~~L~~t~~~L~~~~g~~~~~~G~~-~~~v~~~~~~~~~~f~Vvd~   81 (93)
T cd05481           3 MKINGKQSVKFQLDTGATCNVLPLRWLKSLTPDKDPELRPSPVRLTAYGGSTIPVEGGV-KLKCRYRNPKYNLTFQVVKE   81 (93)
T ss_pred             eEeCCceeEEEEEecCCEEEeccHHHHhhhccCCCCcCccCCeEEEeeCCCEeeeeEEE-EEEEEECCcEEEEEEEEECC
Confidence            46788 999999999999999999999875             5888999999999884 78999999999999999997


Q ss_pred             CCceEEeCcc
Q 045784           72 EGYDVVLDTQ   81 (90)
Q Consensus        72 ~~~dvILG~~   81 (90)
                      .+. -|||.+
T Consensus        82 ~~~-~lLG~~   90 (93)
T cd05481          82 EGP-PLLGAK   90 (93)
T ss_pred             CCC-ceEccc
Confidence            744 445653

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi

>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases

Probab=98.74  E-value=1.7e-07  Score=55.42  Aligned_cols=78  Identities=13%  Similarity=0.062  Sum_probs=57.6

Q ss_pred             EEEECCEEEEEEEcCCCCcccccHHhhhee--------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceE
Q 045784            5 IGRLVHKVVTVLIDSRRTHNFVRQELAVKL--------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDV   76 (90)
Q Consensus         5 ~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l--------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dv   76 (90)
                      ..+++|++..+|+||||..++|++....+.        .+.-..| ..... ....+.+++.++.....+.+.+.....-
T Consensus         2 ~~~i~g~~~~~llDTGAd~Tvi~~~~~p~~w~~~~~~~~i~GIGG-~~~~~-~~~~v~i~i~~~~~~g~vlv~~~~~P~n   79 (87)
T cd05482           2 TLYINGKLFEGLLDTGADVSIIAENDWPKNWPIQPAPSNLTGIGG-AITPS-QSSVLLLEIDGEGHLGTILVYVLSLPVN   79 (87)
T ss_pred             EEEECCEEEEEEEccCCCCeEEcccccCCCCccCCCCeEEEeccc-eEEEE-EEeeEEEEEcCCeEEEEEEEccCCCccc
Confidence            467899999999999999999998766543        2333333 22222 2336789999998889999998745567


Q ss_pred             EeCcchhh
Q 045784           77 VLDTQWLS   84 (90)
Q Consensus        77 ILG~~wL~   84 (90)
                      |+|.|.|+
T Consensus        80 llGRd~L~   87 (87)
T cd05482          80 LWGRDILS   87 (87)
T ss_pred             EEccccCC
Confidence            89999874

This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro

>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.7e-06  Score=53.99  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=55.9

Q ss_pred             EEEEEcCCCC-cccccHHhhhee--------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeCcchh
Q 045784           13 VTVLIDSRRT-HNFVRQELAVKL--------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL   83 (90)
Q Consensus        13 ~~aLiDsGA~-~~~i~~~~a~~l--------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG~~wL   83 (90)
                      ..+|||||++ --.++++.|+++        ++..++|+...+.  .....++++|.+...-..+.+....+ ++|++||
T Consensus        27 ~~~LiDTGFtg~lvlp~~vaek~~~~~~~~~~~~~a~~~~v~t~--V~~~~iki~g~e~~~~Vl~s~~~~~~-liG~~~l  103 (125)
T COG5550          27 YDELIDTGFTGYLVLPPQVAEKLGLPLFSTIRIVLADGGVVKTS--VALATIKIDGVEKVAFVLASDNLPEP-LIGVNLL  103 (125)
T ss_pred             eeeEEecCCceeEEeCHHHHHhcCCCccCChhhhhhcCCEEEEE--EEEEEEEECCEEEEEEEEccCCCccc-chhhhhh
Confidence            3359999999 788999999999        4556776655442  44567889998877777777777777 9999999


Q ss_pred             hhcC
Q 045784           84 STFG   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      +..+
T Consensus       104 k~l~  107 (125)
T COG5550         104 KLLG  107 (125)
T ss_pred             hhcc
Confidence            9765

>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []

Probab=98.29  E-value=3e-06  Score=54.74  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      -+++.+|+||||+.|||++++|+++
T Consensus        10 ~~~~~~LlDsGSq~SfIt~~la~~L   34 (164)
T PF05585_consen   10 QVEARALLDSGSQRSFITESLANKL   34 (164)
T ss_pred             EEEEEEEEecCCchhHHhHHHHHHh
Confidence            3678899999999999999999999

However, it seems likely that these proteins act as aspartic peptidases.

>PF05618 Zn_protease: Putative ATP-dependant zinc protease; InterPro: IPR008503 This family consists of several hypothetical proteins from different archaeal and bacterial species

Probab=97.56  E-value=0.00043  Score=44.06  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee------eEEe-----c--CCCeeeee------------------ceeeeeEEEEe
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL------NVMV-----A--SGERFSSL------------------GTCLQTLIKLQ   58 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l------~v~~-----a--~G~~~~~~------------------~~~~~~~i~i~   58 (90)
                      |..+.|-+||||..|-|+..=.+.+      .|+.     .  .+....+.                  ..+-+..+.++
T Consensus        14 ~~~~~aKiDTGA~tSSLhA~~I~~ferdg~~~VrF~~~~~~~~~~~~~~~e~p~~~~~~Ik~s~g~~e~R~VV~~~~~lg   93 (138)
T PF05618_consen   14 GLTIKAKIDTGAKTSSLHATDIEEFERDGEKWVRFTVHDPDNEEKEGVTFEAPVVRRRKIKSSNGESERRPVVETTLCLG   93 (138)
T ss_dssp             TEEEEEEE-TT-SSEEEE-EEEEEEEETTEEEEEE----EEEETTEEEEEEEEEECEEE---------CCEEEEEEEEET
T ss_pred             CCEEEEEEcCCCcccceeecceEEeeeCCceEEEEecccccCCCcceEEEEEEeEeEEEEEcCCCceeEeeEEEEEEEEC
Confidence            5568999999999999988777765      2222     1  11111111                  12235678899


Q ss_pred             ceeEEeeEEEcCC--CCceEEeC-cchhhhc
Q 045784           59 GVPLIVDFYLLPF--EGYDVVLD-TQWLSTF   86 (90)
Q Consensus        59 ~~~~~~~~~v~~~--~~~dvILG-~~wL~~~   86 (90)
                      +..+..+|.+.+=  ..|+++|| ..||+..
T Consensus        94 ~~~~~~e~tL~dR~~m~yp~LlGrR~~l~~~  124 (138)
T PF05618_consen   94 GKTWKIEFTLTDRSNMKYPMLLGRRNFLRGR  124 (138)
T ss_dssp             TEEEEEEEEEE-S--SS-SEEE-HHHHHHTT
T ss_pred             CEEEEEEEEEcCCCcCcCCEEEEehHHhcCC
Confidence            9999999999985  45999999 9998753

; PDB: 2PMA_B.

>PF12382 Peptidase_A2E: Retrotransposon peptidase; InterPro: IPR024648 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.0017  Score=39.53  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=42.2

Q ss_pred             EEEEEEcCCCCcccccHHhhheeeEEe--------cCC-CeeeeeceeeeeEEEEeceeEEeeEEEcCCCCc
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKLNVMV--------ASG-ERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGY   74 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l~v~~--------a~G-~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~   74 (90)
                      .+..|||+||..|.|.++.++.+.+..        .+| -+-.+..+...+.+.++|.....+|+|..--..
T Consensus        47 sipclidtgaq~niiteetvrahklptrpw~~sviyggvyp~kinrkt~kl~i~lngisikteflvvkkfsh  118 (137)
T PF12382_consen   47 SIPCLIDTGAQVNIITEETVRAHKLPTRPWSQSVIYGGVYPNKINRKTIKLNINLNGISIKTEFLVVKKFSH  118 (137)
T ss_pred             cceeEEccCceeeeeehhhhhhccCCCCcchhheEeccccccccccceEEEEEEecceEEEEEEEEEEeccC
Confidence            356899999999999999998872221        111 111222233456678889999999998864433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This entry represents a small family of fungal retroviral aspartyl peptidases.

>COG4067 Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.0022  Score=41.60  Aligned_cols=76  Identities=22%  Similarity=0.276  Sum_probs=54.9

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee---------------------------------eEEecCCCeeeeeceeeeeEEEE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL---------------------------------NVMVASGERFSSLGTCLQTLIKL   57 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l---------------------------------~v~~a~G~~~~~~~~~~~~~i~i   57 (90)
                      ....|-+||||..|-++..=...+                                 .++-++|...+. ..+-...+.+
T Consensus        38 ~~~kAkiDTGA~TSsL~A~dI~~fkRdGe~WVRF~~~~~~~~~~~~~~~e~pvi~~ikvR~s~~~~~e~-RpVV~~~l~l  116 (162)
T COG4067          38 IQLKAKIDTGAVTSSLSASDIERFKRDGERWVRFRLADTDNLDQRSEECEAPVIRKIKVRSSSGSRAER-RPVVRLTLCL  116 (162)
T ss_pred             ceeeeeecccceeeeEEeecceeeeeCCceEEEEEeecccCccccceeeccceEEEEEEecCCCCcccc-ccEEEEEEee
Confidence            557899999999999998777666                                 112233332221 1233467889


Q ss_pred             eceeEEeeEEEcCCC--CceEEeCcchhhhcC
Q 045784           58 QGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG   87 (90)
Q Consensus        58 ~~~~~~~~~~v~~~~--~~dvILG~~wL~~~~   87 (90)
                      |+...+.+|...+-.  .|+++||.-+|++..
T Consensus       117 G~~~~~~E~tLtDR~~m~Yp~LlGrk~l~~~~  148 (162)
T COG4067         117 GGRILPIEFTLTDRSNMRYPVLLGRKALRHFG  148 (162)
T ss_pred             CCeeeeEEEEeecccccccceEecHHHHhhCC
Confidence            999999999999854  599999999999843

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=96.15  E-value=0.043  Score=37.57  Aligned_cols=71  Identities=15%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             EEEEEcCCCCcccccHHhhheeeEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCC-CCceEEeCcchhhhcC
Q 045784           13 VTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPF-EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~-~~~dvILG~~wL~~~~   87 (90)
                      ..+++|||++..++.++....+.+...+|........-  .-+.. +....+ +-.++. .....|||.+||+.+.
T Consensus       177 ~~ai~DTGTs~~~lp~~~~P~i~~~f~~~~~~~i~~~~--y~~~~-~~~~~C-~~~~~~~~~~~~ilG~~fl~~~~  248 (265)
T cd05476         177 GGTIIDSGTTLTYLPDPAYPDLTLHFDGGADLELPPEN--YFVDV-GEGVVC-LAILSSSSGGVSILGNIQQQNFL  248 (265)
T ss_pred             CcEEEeCCCcceEcCccccCCEEEEECCCCEEEeCccc--EEEEC-CCCCEE-EEEecCCCCCcEEEChhhcccEE
Confidence            34899999999999999887677777766544433211  11111 111122 122232 3456899999999864

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=95.90  E-value=0.0093  Score=41.11  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=20.9

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ....++||||++..++.++.++++
T Consensus       197 ~~~~~iiDSGTs~~~lP~~~~~~l  220 (278)
T cd06097         197 SGFSAIADTGTTLILLPDAIVEAY  220 (278)
T ss_pred             CCceEEeecCCchhcCCHHHHHHH
Confidence            456799999999999999888877

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>PF03539 Spuma_A9PTase: Spumavirus aspartic protease (A9); InterPro: IPR001641 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.38  E-value=0.27  Score=31.90  Aligned_cols=73  Identities=15%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             ECCEEEEEEEcCCCCcccccHHhhhee------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEe---
Q 045784            8 LVHKVVTVLIDSRRTHNFVRQELAVKL------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVL---   78 (90)
Q Consensus         8 i~~~~~~aLiDsGA~~~~i~~~~a~~l------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvIL---   78 (90)
                      +.|..+.+.-||||+...|.+.|...-      .+..-.|++..   .+.-+++.++|+...++..--++   |.+|   
T Consensus         1 ikg~~l~~~wDsga~ITCiP~~fl~~E~Pi~~~~i~Tihg~~~~---~vYYl~fKi~grkv~aEVi~s~~---dy~li~p   74 (163)
T PF03539_consen    1 IKGTKLKGHWDSGAQITCIPESFLEEEQPIGKTLIKTIHGEKEQ---DVYYLTFKINGRKVEAEVIASPY---DYILISP   74 (163)
T ss_dssp             ETTEEEEEEE-TT-SSEEEEGGGTTT---SEEEEEE-SS-EEEE---EEEEEEEEESS-EEEEEEEEESS---SSEEE-T
T ss_pred             CCCceeeEEecCCCeEEEccHHHhCccccccceEEEEecCceec---cEEEEEEEEcCeEEEEEEecCcc---ceEEEcc
Confidence            457788999999999999999998876      45555665443   33457899999988888776653   3222   


Q ss_pred             -Ccchhhhc
Q 045784           79 -DTQWLSTF   86 (90)
Q Consensus        79 -G~~wL~~~   86 (90)
                       -.||+++.
T Consensus        75 ~diPw~~~~   83 (163)
T PF03539_consen   75 SDIPWYKKK   83 (163)
T ss_dssp             TT-HHHHS-
T ss_pred             cccccccCC
Confidence             34677654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A9 (spumapepsin family, clan AA). Foamy viruses are single-stranded enveloped retroviruses that have been noted to infect monkeys, cats and humans. In the human virus, the aspartic protease is encoded by the retroviral gag gene [], and in monkeys by the pol gene []. At present, the virus has not been proven to cause any particular disease. However, studies have shown Human foamy virus causes neurological disorders in infected mice []. It is not clear whether the Foamy virus/spumavirus proteases share a common evolutionary origin with other aspartic proteases. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 2JYS_A.

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=95.38  E-value=0.13  Score=36.05  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             EEEEcCCCCcccccHHhhhee----eEEe-cCCC-eeeeec--eeeeeEEEEeceeEEee-------------EEEcCC-
Q 045784           14 TVLIDSRRTHNFVRQELAVKL----NVMV-ASGE-RFSSLG--TCLQTLIKLQGVPLIVD-------------FYLLPF-   71 (90)
Q Consensus        14 ~aLiDsGA~~~~i~~~~a~~l----~v~~-a~G~-~~~~~~--~~~~~~i~i~~~~~~~~-------------~~v~~~-   71 (90)
                      .+++|||++..++.++..+++    .... ..|. ...|..  ..+.+.+.+++.++...             +-+.+. 
T Consensus       203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~~~~C~~~i~~~~  282 (318)
T cd05477         203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQNNGYCTVGIEPTY  282 (318)
T ss_pred             eeeECCCCccEECCHHHHHHHHHHhCCccccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecCCCeEEEEEEecc
Confidence            589999999999999999988    1111 1122 223321  12456677777655432             112111 


Q ss_pred             -----CCceEEeCcchhhhcCC
Q 045784           72 -----EGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        72 -----~~~dvILG~~wL~~~~p   88 (90)
                           +....|||.+||+.+..
T Consensus       283 ~~~~~~~~~~ilG~~fl~~~y~  304 (318)
T cd05477         283 LPSQNGQPLWILGDVFLRQYYS  304 (318)
T ss_pred             cCCCCCCceEEEcHHHhhheEE
Confidence                 12458999999998753

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=95.20  E-value=0.063  Score=37.06  Aligned_cols=76  Identities=11%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             EEEEEEcCCCCcccccHHhhhee----eEE-ecCCCeeeeece--eeeeEEEEeceeEE-----------------eeEE
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL----NVM-VASGERFSSLGT--CLQTLIKLQGVPLI-----------------VDFY   67 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l----~v~-~a~G~~~~~~~~--~~~~~i~i~~~~~~-----------------~~~~   67 (90)
                      +..|++|||++...+..+..+++    ... ..+.-.+.|...  .+.+.+.+++..+.                 +-+.
T Consensus       199 ~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~  278 (317)
T PF00026_consen  199 GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLG  278 (317)
T ss_dssp             EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEES
T ss_pred             ceeeecccccccccccchhhHHHHhhhcccccceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEee
Confidence            46899999999999999999988    111 111112232211  23444455443321                 2222


Q ss_pred             EcC----CCCceEEeCcchhhhcC
Q 045784           68 LLP----FEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 v~~----~~~~dvILG~~wL~~~~   87 (90)
                      +.+    ......|||++||+++-
T Consensus       279 i~~~~~~~~~~~~iLG~~fl~~~y  302 (317)
T PF00026_consen  279 IQPMDSSDDSDDWILGSPFLRNYY  302 (317)
T ss_dssp             EEEESSTTSSSEEEEEHHHHTTEE
T ss_pred             eecccccccCCceEecHHHhhceE
Confidence            222    34578999999999864

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=95.17  E-value=0.16  Score=35.72  Aligned_cols=83  Identities=11%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             EEECCEEE------EEEEcCCCCcccccHHhhhee----eEEe-cCCC-eeeeec--eeeeeEEEEeceeEEee------
Q 045784            6 GRLVHKVV------TVLIDSRRTHNFVRQELAVKL----NVMV-ASGE-RFSSLG--TCLQTLIKLQGVPLIVD------   65 (90)
Q Consensus         6 ~~i~~~~~------~aLiDsGA~~~~i~~~~a~~l----~v~~-a~G~-~~~~~~--~~~~~~i~i~~~~~~~~------   65 (90)
                      ..+|++.+      .+++|||++..++.++..+++    .... .+|. .+.|..  ..+.+.+.+++..+..+      
T Consensus       194 v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~  273 (317)
T cd05478         194 VTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYIL  273 (317)
T ss_pred             EEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHHhCCccccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHhee
Confidence            46777655      589999999999999998887    1111 1222 233332  23456677777655422      


Q ss_pred             -------EEEcCCC-CceEEeCcchhhhcCC
Q 045784           66 -------FYLLPFE-GYDVVLDTQWLSTFGL   88 (90)
Q Consensus        66 -------~~v~~~~-~~dvILG~~wL~~~~p   88 (90)
                             ..+.+.. ....|||-.||+.+..
T Consensus       274 ~~~~~C~~~~~~~~~~~~~IlG~~fl~~~y~  304 (317)
T cd05478         274 QDQGSCTSGFQSMGLGELWILGDVFIRQYYS  304 (317)
T ss_pred             cCCCEEeEEEEeCCCCCeEEechHHhcceEE
Confidence                   1222322 2458999999998653

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=95.09  E-value=0.044  Score=38.74  Aligned_cols=72  Identities=14%  Similarity=0.080  Sum_probs=40.9

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee-------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeCcchh
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL-------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWL   83 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l-------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG~~wL   83 (90)
                      ....+++|||.+..++.++..+++       .+...+|..+.....  +.-+...+..  + +.......--.|||-+||
T Consensus       230 ~~~~aivDSGTs~~~lp~~~~~~l~~~~P~i~~~f~~g~~~~i~p~--~y~~~~~~~~--c-~~~~~~~~~~~ILG~~fl  304 (326)
T cd06096         230 KGLGMLVDSGSTLSHFPEDLYNKINNFFPTITIIFENNLKIDWKPS--SYLYKKESFW--C-KGGEKSVSNKPILGASFF  304 (326)
T ss_pred             cCCCEEEeCCCCcccCCHHHHHHHHhhcCcEEEEEcCCcEEEECHH--HhccccCCce--E-EEEEecCCCceEEChHHh
Confidence            345689999999999999999987       334444444432211  1111111111  1 111122223579999999


Q ss_pred             hhcC
Q 045784           84 STFG   87 (90)
Q Consensus        84 ~~~~   87 (90)
                      +.+-
T Consensus       305 r~~y  308 (326)
T cd06096         305 KNKQ  308 (326)
T ss_pred             cCcE
Confidence            9864

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=94.91  E-value=0.12  Score=35.66  Aligned_cols=77  Identities=16%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee----eEEecC--C-Ceeeeecee-eeeEEEEeceeEEee-----------------
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL----NVMVAS--G-ERFSSLGTC-LQTLIKLQGVPLIVD-----------------   65 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l----~v~~a~--G-~~~~~~~~~-~~~~i~i~~~~~~~~-----------------   65 (90)
                      ....+++|||++..++.++..+++    ......  + ....|.... +.+.+.+++..+..+                 
T Consensus       177 ~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~  256 (295)
T cd05474         177 KNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGDGA  256 (295)
T ss_pred             CCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCCCC
Confidence            446899999999999999999988    111111  1 112221111 356666666444321                 


Q ss_pred             --EEEcCCCCceEEeCcchhhhcC
Q 045784           66 --FYLLPFEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 --~~v~~~~~~dvILG~~wL~~~~   87 (90)
                        +.+.+......|||..||+.+.
T Consensus       257 C~~~i~~~~~~~~iLG~~fl~~~y  280 (295)
T cd05474         257 CYLGIQPSTSDYNILGDTFLRSAY  280 (295)
T ss_pred             eEEEEEeCCCCcEEeChHHhhcEE
Confidence              2222333245899999999874

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=94.70  E-value=0.6  Score=32.10  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=49.5

Q ss_pred             EEEEEECC--EEEEEEEcCCCCcccccHHhhheeeEEecCCCeeeeeceeeeeEEEEeceeEE-eeEEEcC-CCCceEEe
Q 045784            3 RVIGRLVH--KVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGVPLI-VDFYLLP-FEGYDVVL   78 (90)
Q Consensus         3 ~v~~~i~~--~~~~aLiDsGA~~~~i~~~~a~~l~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-~~~~v~~-~~~~dvIL   78 (90)
                      .++..|..  ++..+++||||+..++.     ...+..++|...  .|....=.+.+++.... ..|-+.. ....|-||
T Consensus         4 ~~~i~iGtp~q~~~v~~DTgS~~~wv~-----~~~~~Y~~g~~~--~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~Gil   76 (295)
T cd05474           4 SAELSVGTPPQKVTVLLDTGSSDLWVP-----DFSISYGDGTSA--SGTWGTDTVSIGGATVKNLQFAVANSTSSDVGVL   76 (295)
T ss_pred             EEEEEECCCCcEEEEEEeCCCCcceee-----eeEEEeccCCcE--EEEEEEEEEEECCeEecceEEEEEecCCCCccee
Confidence            46677776  99999999999999999     457777776433  23333335667766543 3454443 34588888


Q ss_pred             Ccch
Q 045784           79 DTQW   82 (90)
Q Consensus        79 G~~w   82 (90)
                      |..+
T Consensus        77 GLg~   80 (295)
T cd05474          77 GIGL   80 (295)
T ss_pred             eECC
Confidence            8765

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=94.63  E-value=0.21  Score=35.08  Aligned_cols=75  Identities=12%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             EEEEcCCCCcccccHHhhhee----eEEecCCC-eeeeec--eeeeeEEEEeceeEEee---EEE--------------c
Q 045784           14 TVLIDSRRTHNFVRQELAVKL----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIVD---FYL--------------L   69 (90)
Q Consensus        14 ~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---~~v--------------~   69 (90)
                      .+++|||++..++.++..+++    .....+|. ...|..  ..+.+.+.+++..+...   +.+              .
T Consensus       200 ~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~  279 (316)
T cd05486         200 QAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQ  279 (316)
T ss_pred             EEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEE
Confidence            699999999999999988777    22222332 223332  23456777777654421   111              1


Q ss_pred             CC-----CCceEEeCcchhhhcCC
Q 045784           70 PF-----EGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        70 ~~-----~~~dvILG~~wL~~~~p   88 (90)
                      .+     .+...|||-.||+++-.
T Consensus       280 ~~~~~~~~~~~~ILGd~flr~~y~  303 (316)
T cd05486         280 GLDIPPPAGPLWILGDVFIRQYYS  303 (316)
T ss_pred             ECCCCCCCCCeEEEchHHhcceEE
Confidence            11     12247999999998753

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=94.63  E-value=0.32  Score=33.51  Aligned_cols=78  Identities=17%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHh-------hhee-----------------eEEecCCCeeeeeceeeeeEEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQEL-------AVKL-----------------NVMVASGERFSSLGTCLQTLIK   56 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~-------a~~l-----------------~v~~a~G~~~~~~~~~~~~~i~   56 (90)
                      .++..|.  .++..+++|||++..++...-       ..+.                 .+..++|.   ..|....=.+.
T Consensus         3 ~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~---~~G~~~~D~v~   79 (317)
T PF00026_consen    3 YINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGS---VSGNLVSDTVS   79 (317)
T ss_dssp             EEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEE---EEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcc---cccccccceEe
Confidence            5677787  899999999999998887421       1111                 23334443   33444444677


Q ss_pred             EeceeEE-eeEEEcCC--------CCceEEeCcchh
Q 045784           57 LQGVPLI-VDFYLLPF--------EGYDVVLDTQWL   83 (90)
Q Consensus        57 i~~~~~~-~~~~v~~~--------~~~dvILG~~wL   83 (90)
                      +++.... ..|.....        ..+|-|||+.+-
T Consensus        80 ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~  115 (317)
T PF00026_consen   80 IGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFP  115 (317)
T ss_dssp             ETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSG
T ss_pred             eeeccccccceeccccccccccccccccccccccCC
Confidence            7877655 45544433        347888888753

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>PTZ00147 plasmepsin-1; Provisional

Probab=94.52  E-value=0.34  Score=36.34  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=45.3

Q ss_pred             EEEEEEcCCCCcccccHHhhhee--eE---Eec-CCC-eeeee-ceeeeeEEEEeceeEEee---------------E--
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL--NV---MVA-SGE-RFSSL-GTCLQTLIKLQGVPLIVD---------------F--   66 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l--~v---~~a-~G~-~~~~~-~~~~~~~i~i~~~~~~~~---------------~--   66 (90)
                      ...|++|||.+..++.++.++++  .+   ... .+. ...|. ...+.+.+.+++..+..+               +  
T Consensus       332 ~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~  411 (453)
T PTZ00147        332 KANVIVDSGTSVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCML  411 (453)
T ss_pred             ceeEEECCCCchhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheeccccCCCcEEEE
Confidence            46799999999999999998877  11   111 111 12332 223456666666544211               1  


Q ss_pred             EEcC--CCCceEEeCcchhhhcCC
Q 045784           67 YLLP--FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        67 ~v~~--~~~~dvILG~~wL~~~~p   88 (90)
                      -+.+  ......|||..||+++-.
T Consensus       412 ~i~~~~~~~~~~ILGd~FLr~~Yt  435 (453)
T PTZ00147        412 NIIPIDLEKNTFILGDPFMRKYFT  435 (453)
T ss_pred             EEEECCCCCCCEEECHHHhccEEE
Confidence            1222  222357999999998753

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=94.45  E-value=0.49  Score=35.46  Aligned_cols=76  Identities=17%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             EEEEEC--CEEEEEEEcCCCCcccccHHhhhe--------e---------------eEEecCCCeeeeeceeeeeEEEEe
Q 045784            4 VIGRLV--HKVVTVLIDSRRTHNFVRQELAVK--------L---------------NVMVASGERFSSLGTCLQTLIKLQ   58 (90)
Q Consensus         4 v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~~--------l---------------~v~~a~G~~~~~~~~~~~~~i~i~   58 (90)
                      .+..|.  .++..+++||||+..++...-...        .               .+..++|.   ..|....=.+.++
T Consensus       141 ~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gs---v~G~~~~Dtv~iG  217 (450)
T PTZ00013        141 GEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT---VKGFFSKDLVTLG  217 (450)
T ss_pred             EEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCce---EEEEEEEEEEEEC
Confidence            345555  799999999999999986432211        0               23344443   2344333356777


Q ss_pred             ceeEEeeEEEc-C---------CCCceEEeCcch
Q 045784           59 GVPLIVDFYLL-P---------FEGYDVVLDTQW   82 (90)
Q Consensus        59 ~~~~~~~~~v~-~---------~~~~dvILG~~w   82 (90)
                      +......|... +         ...+|-|||+.|
T Consensus       218 ~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~  251 (450)
T PTZ00013        218 HLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGW  251 (450)
T ss_pred             CEEEccEEEEEEeccccccceecccccceecccC
Confidence            76655444332 1         124789999976

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=94.44  E-value=0.36  Score=34.17  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             EEEEEcCCCCcccccHHhhhee----e-EEecCCC-eeeeec--eeeeeEEEEeceeEEee---EE--------------
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL----N-VMVASGE-RFSSLG--TCLQTLIKLQGVPLIVD---FY--------------   67 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l----~-v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---~~--------------   67 (90)
                      ..+++|||++..++.++.++.+    . ....++. .+.|..  ..+.+.+.++++.+..+   +.              
T Consensus       211 ~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~  290 (329)
T cd05485         211 CQAIADTGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSG  290 (329)
T ss_pred             cEEEEccCCcceeCCHHHHHHHHHHhCCccccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeee
Confidence            3699999999999999988877    1 1112221 123321  22456677777655422   11              


Q ss_pred             EcC-----CCCceEEeCcchhhhcCC
Q 045784           68 LLP-----FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        68 v~~-----~~~~dvILG~~wL~~~~p   88 (90)
                      +.+     ..+...|||..||+.+-.
T Consensus       291 ~~~~~~~~~~~~~~IlG~~fl~~~y~  316 (329)
T cd05485         291 FMGIDIPPPAGPLWILGDVFIGKYYT  316 (329)
T ss_pred             EEECcCCCCCCCeEEEchHHhccceE
Confidence            111     112358999999998753

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>PTZ00147 plasmepsin-1; Provisional

Probab=94.39  E-value=0.56  Score=35.19  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             EEEEEC--CEEEEEEEcCCCCcccccHHhhh------e--e---------------eEEecCCCeeeeeceeeeeEEEEe
Q 045784            4 VIGRLV--HKVVTVLIDSRRTHNFVRQELAV------K--L---------------NVMVASGERFSSLGTCLQTLIKLQ   58 (90)
Q Consensus         4 v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~------~--l---------------~v~~a~G~~~~~~~~~~~~~i~i~   58 (90)
                      .+..|.  .++..+++||||+..++...-..      .  .               .+...+|.   ..|....=.+.++
T Consensus       142 ~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~Gs---vsG~~~~DtVtiG  218 (453)
T PTZ00147        142 GEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGT---VSGFFSKDLVTIG  218 (453)
T ss_pred             EEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCCC---EEEEEEEEEEEEC
Confidence            455665  78999999999999998643211      0  0               34445553   2344433356777


Q ss_pred             ceeEEeeEEEcC----------CCCceEEeCcch
Q 045784           59 GVPLIVDFYLLP----------FEGYDVVLDTQW   82 (90)
Q Consensus        59 ~~~~~~~~~v~~----------~~~~dvILG~~w   82 (90)
                      +...+..|....          ....|-|||+.|
T Consensus       219 ~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~  252 (453)
T PTZ00147        219 NLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGW  252 (453)
T ss_pred             CEEEEEEEEEEEeccCcccccccccccceecccC
Confidence            766554443321          124789999987

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=93.76  E-value=0.44  Score=33.53  Aligned_cols=22  Identities=9%  Similarity=0.087  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcccccHHhhhee
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..|++|||++..+..+++++++
T Consensus       211 ~~aivDTGTs~~~lP~~~~~~i  232 (317)
T cd06098         211 CAAIADSGTSLLAGPTTIVTQI  232 (317)
T ss_pred             cEEEEecCCcceeCCHHHHHhh
Confidence            4699999999999999998876

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=93.33  E-value=0.091  Score=35.57  Aligned_cols=25  Identities=8%  Similarity=0.069  Sum_probs=22.5

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .....++||||++..++.++..+++
T Consensus       200 ~~~~~~iiDsGt~~~~lp~~~~~~l  224 (283)
T cd05471         200 SGGGGAIVDSGTSLIYLPSSVYDAI  224 (283)
T ss_pred             CCCcEEEEecCCCCEeCCHHHHHHH
Confidence            3467899999999999999999988

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=93.32  E-value=0.36  Score=33.98  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=44.9

Q ss_pred             EEEEEcCCCCcccccHHhhhee--eEE--e-cCCC-eeeeec--eeeeeEEEEeceeEEee---E----------EEcC-
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL--NVM--V-ASGE-RFSSLG--TCLQTLIKLQGVPLIVD---F----------YLLP-   70 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l--~v~--~-a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---~----------~v~~-   70 (90)
                      ..+++|||++..++.++.++.+  .+.  . .++. .+.|..  ..+.+.+.+++..+...   +          .+.+ 
T Consensus       206 ~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~~~~~~  285 (320)
T cd05488         206 TGAAIDTGTSLIALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVSGSCISAFTGM  285 (320)
T ss_pred             CeEEEcCCcccccCCHHHHHHHHHHhCCccccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCCCeEEEEEEEC
Confidence            4689999999999999998887  111  1 1221 123321  13456677777655422   1          1111 


Q ss_pred             -C---CCceEEeCcchhhhcC
Q 045784           71 -F---EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        71 -~---~~~dvILG~~wL~~~~   87 (90)
                       .   .+...|||..||+.+-
T Consensus       286 ~~~~~~~~~~ilG~~fl~~~y  306 (320)
T cd05488         286 DFPEPVGPLAIVGDAFLRKYY  306 (320)
T ss_pred             cCCCCCCCeEEEchHHhhheE
Confidence             1   1235899999998764

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=92.90  E-value=1.3  Score=30.49  Aligned_cols=27  Identities=7%  Similarity=0.080  Sum_probs=22.1

Q ss_pred             EEEEEECC--EEEEEEEcCCCCcccccHH
Q 045784            3 RVIGRLVH--KVVTVLIDSRRTHNFVRQE   29 (90)
Q Consensus         3 ~v~~~i~~--~~~~aLiDsGA~~~~i~~~   29 (90)
                      .++..|++  ++..+++||||+..++..+
T Consensus         2 ~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~   30 (278)
T cd06097           2 LTPVKIGTPPQTLNLDLDTGSSDLWVFSS   30 (278)
T ss_pred             eeeEEECCCCcEEEEEEeCCCCceeEeeC
Confidence            35667777  9999999999999988644

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=92.47  E-value=2.4  Score=29.91  Aligned_cols=26  Identities=12%  Similarity=0.054  Sum_probs=21.4

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++|||++..++..
T Consensus        10 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~   37 (326)
T cd05487          10 YGEIGIGTPPQTFKVVFDTGSSNLWVPS   37 (326)
T ss_pred             EEEEEECCCCcEEEEEEeCCccceEEcc
Confidence            4556666  7999999999999999963

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=92.03  E-value=0.67  Score=32.57  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=44.7

Q ss_pred             EEEEEcCCCCcccccHHhhhee-----eEEecCCC-eeeeec--eeeeeEEEEeceeEEee---EE--------------
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL-----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIVD---FY--------------   67 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---~~--------------   67 (90)
                      ..|+||||++..++.++.++++     .....+|. .+.|..  ..+.+.+.+++..+..+   ++              
T Consensus       207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~  286 (325)
T cd05490         207 CEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSG  286 (325)
T ss_pred             CEEEECCCCccccCCHHHHHHHHHHhCCccccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeE
Confidence            4799999999999999988877     11111221 233321  22446666776644321   11              


Q ss_pred             Ec--CC---CCceEEeCcchhhhcCC
Q 045784           68 LL--PF---EGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        68 v~--~~---~~~dvILG~~wL~~~~p   88 (90)
                      +.  +.   .+...|||..||+++-.
T Consensus       287 ~~~~~~~~~~~~~~ilGd~flr~~y~  312 (325)
T cd05490         287 FMGLDIPPPAGPLWILGDVFIGRYYT  312 (325)
T ss_pred             EEECCCCCCCCceEEEChHhheeeEE
Confidence            11  11   12357999999998743

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=91.49  E-value=0.8  Score=34.36  Aligned_cols=76  Identities=16%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             EEEEEEcCCCCcccccHHhhhee--eEEe----cCCC-eeeee-ceeeeeEEEEeceeEEe-----------------eE
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL--NVMV----ASGE-RFSSL-GTCLQTLIKLQGVPLIV-----------------DF   66 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l--~v~~----a~G~-~~~~~-~~~~~~~i~i~~~~~~~-----------------~~   66 (90)
                      ...|++|||++..++.++.++++  .+..    ..+. ...|. ...+.+.+.+++..+..                 -+
T Consensus       331 ~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~  410 (450)
T PTZ00013        331 KANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMI  410 (450)
T ss_pred             ccceEECCCCccccCCHHHHHHHHHHhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHHHheehhccCCCCeeEE
Confidence            35699999999999999988877  2211    1111 12232 12344556666544321                 12


Q ss_pred             EEcCC--CCceEEeCcchhhhcC
Q 045784           67 YLLPF--EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        67 ~v~~~--~~~dvILG~~wL~~~~   87 (90)
                      .+.+.  .+...|||-.||+++-
T Consensus       411 ~i~~~~~~~~~~ILGd~FLr~~Y  433 (450)
T PTZ00013        411 TMLPVDIDDNTFILGDPFMRKYF  433 (450)
T ss_pred             EEEECCCCCCCEEECHHHhccEE
Confidence            22222  2235899999999864

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=91.12  E-value=3  Score=29.18  Aligned_cols=26  Identities=15%  Similarity=0.046  Sum_probs=21.2

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..+..|.  .+++.+++||||+..++..
T Consensus         5 ~~~i~iGtP~q~~~v~~DTGS~~~wv~~   32 (318)
T cd05477           5 YGEISIGTPPQNFLVLFDTGSSNLWVPS   32 (318)
T ss_pred             EEEEEECCCCcEEEEEEeCCCccEEEcc
Confidence            4556666  4899999999999999874

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=90.97  E-value=2  Score=29.38  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=46.5

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHhhheeeEEecCCCeeeeeceeeeeEEEEece--eEE-eeEEEcCC------
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGV--PLI-VDFYLLPF------   71 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~~l~v~~a~G~~~~~~~~~~~~~i~i~~~--~~~-~~~~v~~~------   71 (90)
                      .++..|.  .++..+++||||+..++..   ....+...+|+..  .|....=.+.+++.  ... ..|-+...      
T Consensus         3 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~---~~~~~~Y~dg~~~--~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~   77 (265)
T cd05476           3 LVTLSIGTPPQPFSLIVDTGSDLTWTQC---CSYEYSYGDGSST--SGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSF   77 (265)
T ss_pred             EEEEecCCCCcceEEEecCCCCCEEEcC---CceEeEeCCCcee--eeeEEEEEEEecCCCCccCCEEEEecccccCCcc
Confidence            4556666  6899999999999999864   3345566655433  33333335666665  222 33444432      


Q ss_pred             CCceEEeCcch
Q 045784           72 EGYDVVLDTQW   82 (90)
Q Consensus        72 ~~~dvILG~~w   82 (90)
                      ...|-|||+.+
T Consensus        78 ~~~~GIlGLg~   88 (265)
T cd05476          78 GGADGILGLGR   88 (265)
T ss_pred             CCCCEEEECCC
Confidence            24889999875

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=90.84  E-value=3.1  Score=29.80  Aligned_cols=27  Identities=11%  Similarity=0.107  Sum_probs=21.5

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQE   29 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~   29 (90)
                      .++..|.  .++..+++||||+..++..+
T Consensus         5 ~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~   33 (364)
T cd05473           5 YIEMLIGTPPQKLNILVDTGSSNFAVAAA   33 (364)
T ss_pred             EEEEEecCCCceEEEEEecCCcceEEEcC
Confidence            4556666  58999999999999988654

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=90.13  E-value=0.31  Score=28.65  Aligned_cols=26  Identities=15%  Similarity=0.110  Sum_probs=21.0

Q ss_pred             EEEECC--EEEEEEEcCCCCcccccHHh
Q 045784            5 IGRLVH--KVVTVLIDSRRTHNFVRQEL   30 (90)
Q Consensus         5 ~~~i~~--~~~~aLiDsGA~~~~i~~~~   30 (90)
                      +..|..  +++.+++||||+..++..+-
T Consensus         2 ~i~vGtP~q~~~~~~DTGSs~~Wv~~~~   29 (109)
T cd05470           2 EIGIGTPPQTFNVLLDTGSSNLWVPSVD   29 (109)
T ss_pred             EEEeCCCCceEEEEEeCCCCCEEEeCCC
Confidence            456665  99999999999998887653

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=89.62  E-value=2.9  Score=28.99  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=45.8

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHhhheeeEEecCCCeeeeeceeeeeEEEEece-eEE-eeEEEcCC-----CC
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFSSLGTCLQTLIKLQGV-PLI-VDFYLLPF-----EG   73 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~~l~v~~a~G~~~~~~~~~~~~~i~i~~~-~~~-~~~~v~~~-----~~   73 (90)
                      .++..|.  .++..+++||||+..++..+-.....+...+|...  .|....=++.+++. ..+ ..|-+...     ..
T Consensus         3 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~~~i~Yg~Gs~~--~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~   80 (299)
T cd05472           3 VVTVGLGTPARDQTVIVDTGSDLTWVQCQPCCLYQVSYGDGSYT--TGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGG   80 (299)
T ss_pred             EEEEecCCCCcceEEEecCCCCcccccCCCCCeeeeEeCCCceE--EEEEEEEEEEeCCCCccCCEEEECCccCCCccCC
Confidence            4556666  58999999999999998432112336677777643  23332224555654 322 23333321     14


Q ss_pred             ceEEeCcch
Q 045784           74 YDVVLDTQW   82 (90)
Q Consensus        74 ~dvILG~~w   82 (90)
                      .|-|||+.+
T Consensus        81 ~~GilGLg~   89 (299)
T cd05472          81 AAGLLGLGR   89 (299)
T ss_pred             CCEEEECCC
Confidence            788999875

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=89.36  E-value=5.7  Score=27.91  Aligned_cols=26  Identities=15%  Similarity=0.103  Sum_probs=21.1

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|+  .++..+++|||++..++..
T Consensus        12 ~~~i~iGtp~q~~~v~~DTGSs~~wv~~   39 (320)
T cd05488          12 FTDITLGTPPQKFKVILDTGSSNLWVPS   39 (320)
T ss_pred             EEEEEECCCCcEEEEEEecCCcceEEEc
Confidence            4566666  5999999999999998864

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=89.36  E-value=3.7  Score=28.76  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=20.0

Q ss_pred             EEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            4 VIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         4 v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .+..|.  .++..+++||||+..++..
T Consensus         3 ~~i~iGtP~Q~~~v~~DTGSs~~Wv~s   29 (316)
T cd05486           3 GQISIGTPPQNFTVIFDTGSSNLWVPS   29 (316)
T ss_pred             EEEEECCCCcEEEEEEcCCCccEEEec
Confidence            455565  6889999999999998864

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=89.24  E-value=5  Score=28.15  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=20.6

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCccccc
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVR   27 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~   27 (90)
                      .++..|.  .++..+++||||+..++.
T Consensus         8 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~   34 (325)
T cd05490           8 YGEIGIGTPPQTFTVVFDTGSSNLWVP   34 (325)
T ss_pred             EEEEEECCCCcEEEEEEeCCCccEEEE
Confidence            4566776  489999999999999985

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=89.20  E-value=5.1  Score=28.13  Aligned_cols=26  Identities=15%  Similarity=0.057  Sum_probs=21.2

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++||||+..++..
T Consensus        12 ~~~i~iGtP~Q~~~v~~DTGSs~lWv~~   39 (317)
T cd06098          12 FGEIGIGTPPQKFTVIFDTGSSNLWVPS   39 (317)
T ss_pred             EEEEEECCCCeEEEEEECCCccceEEec
Confidence            4566676  6899999999999988865

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=88.73  E-value=5.9  Score=27.21  Aligned_cols=41  Identities=15%  Similarity=0.117  Sum_probs=27.6

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHH-----hhheeeEEecCCCe
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQE-----LAVKLNVMVASGER   43 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~-----~a~~l~v~~a~G~~   43 (90)
                      .++..|.  .++..+++||||+..++.-+     +.....+..++|+.
T Consensus         4 ~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c~c~~~i~Ygd~~~   51 (273)
T cd05475           4 YVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGCQCDYEIEYADGGS   51 (273)
T ss_pred             EEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCCcCccEeEeCCCCc
Confidence            4556666  78999999999999999531     11223666665543

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PTZ00165 aspartyl protease; Provisional

Probab=88.09  E-value=2.8  Score=31.77  Aligned_cols=23  Identities=13%  Similarity=-0.008  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcccccHHhhhee
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ...|++|||++.....++.++++
T Consensus       327 ~~~aIiDTGTSli~lP~~~~~~i  349 (482)
T PTZ00165        327 KCKAAIDTGSSLITGPSSVINPL  349 (482)
T ss_pred             ceEEEEcCCCccEeCCHHHHHHH
Confidence            34699999999999999998877

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=88.04  E-value=5.9  Score=27.74  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=21.0

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++||||+..++..
T Consensus        12 ~~~i~vGtp~q~~~v~~DTGS~~~wv~~   39 (317)
T cd05478          12 YGTISIGTPPQDFTVIFDTGSSNLWVPS   39 (317)
T ss_pred             EEEEEeCCCCcEEEEEEeCCCccEEEec
Confidence            3456666  5899999999999999864

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	8e-08
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	2e-04

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Length = 148

 Score = 45.9 bits (108), Expect = 8e-08
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 1   MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERF----------SSLGTC 50
           M+ +  ++    +   +DS      + Q  A + N+M     R+            +G  
Sbjct: 24  MLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRV 83

Query: 51  LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFG 87
               I+++G  L   F +L  +  D++L    L    
Sbjct: 84  HLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQ 120

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Length = 148

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 1   MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNVMVASGERFS----------SLGTC 50
           M+ +   + +  V   +D+      +   LA K  +     +RF            +G  
Sbjct: 26  MLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRI 85

Query: 51  LQTLIKLQGVPLIVDFYLLPFEGYDVVLDTQWLSTFGLI 89
            Q  +K++   +   F +L     DV++    L      
Sbjct: 86  HQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLAC 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	99.9
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	99.82
3slz_A	132	GAG-Pro-POL polyprotein; beta sheet and dimer, pro	99.24
1fmb_A	104	EIAV protease; hydrolase (acid proteinase), RNA-di	99.13
3ec0_A	99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	99.02
2hs1_A	99	HIV-1 protease; ultra-high resolution active site	99.0
2hah_A	116	Protease, retropepsin; retroviral, aspartyl, hydro	98.95
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	98.6
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	98.17
2rsp_A	124	RSV protease; hydrolase(aspartyl proteinase); 2.00	98.0
2pma_A	146	Uncharacterized protein; APC86035.2, protein LPG00	97.98
3sqf_A	114	Protease; folded monomer, retropepsin, D-type retr	97.96
3liy_A	116	Protease; hydrolase, hydrolase-hydrolase inhibitor	97.7
2jys_A	107	Protease/reverse transcriptase; retroviral proteas	97.0
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	95.2
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	95.18
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	95.08
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	95.02
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	95.01
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	94.86
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	94.69
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	94.63
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	94.48
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	94.44
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	94.36
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	93.99
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	93.91
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	93.88
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	93.71
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	93.68
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	93.51
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	93.43
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	93.27
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	92.94
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	92.72
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	92.47
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	92.44
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	92.3
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	92.16
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	92.04
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	92.02
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	92.02
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	91.88
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	91.88
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	91.85
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	91.7
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	91.65
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	91.65
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	91.29
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	91.14
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	91.12
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	91.12
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	90.97
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	90.95
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	90.65
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	90.5
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	89.81
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	89.65
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	89.54
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	88.56
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	81.95
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	81.73
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	81.4
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	81.21
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	80.64

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=132.64  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             CEEEEEEECCEEEEEEEcCCCCcccccHHhhheeeE----------EecCCCeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            1 MIRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLNV----------MVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         1 ~~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~v----------~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      +++++++|||++++||+||||++++|++++|+++.+          ..+..+...+.+.+...++++++..+.++|.|++
T Consensus        24 ~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~Vle  103 (148)
T 3s8i_A           24 MLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILE  103 (148)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred             EEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEEEeC
Confidence            478999999999999999999999999999999922          2222223455677778899999999999999999


Q ss_pred             CCCceEEeCcchhhhcCC
Q 045784           71 FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p   88 (90)
                      ...+|+|||||||++++.
T Consensus       104 ~~~~d~LLGmD~L~~~~~  121 (148)
T 3s8i_A          104 DQPMDMLLGLDMLRRHQC  121 (148)
T ss_dssp             TCSSSEEECHHHHHHTTC
T ss_pred             CCCcCeeccHHHHHhCCE
Confidence            999999999999999984

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4e-20  Score=116.77  Aligned_cols=85  Identities=18%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccHHhhheee--------EE-ecCC--CeeeeeceeeeeEEEEeceeEEeeEEEcC
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQELAVKLN--------VM-VASG--ERFSSLGTCLQTLIKLQGVPLIVDFYLLP   70 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l~--------v~-~a~G--~~~~~~~~~~~~~i~i~~~~~~~~~~v~~   70 (90)
                      ++++++|||+++.+|+||||++++|++++|+++.        +. .++|  +. ...+.+...++.+++..+..+|.|++
T Consensus        27 ~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~-~~~~~~~~~~i~ig~~~~~~~~~vl~  105 (148)
T 2i1a_A           27 LYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTG-KIIGRIHQAQVKIETQYIPCSFTVLD  105 (148)
T ss_dssp             CEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC------------CEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCc-ccccEEEEEEEEECCEEeceeEEEec
Confidence            6899999999999999999999999999999982        22 2332  21 22344555689999999999999999


Q ss_pred             CCCceEEeCcchhhhcCC
Q 045784           71 FEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~p   88 (90)
                       .++|.|||||||++++.
T Consensus       106 -~~~d~iLG~d~L~~~~~  122 (148)
T 2i1a_A          106 -TDIDVLIGLDMLKRHLA  122 (148)
T ss_dssp             -SSCSEEECHHHHHHTTC
T ss_pred             -CCCCeEecHHHHhhCCE
Confidence             77999999999999874

>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*

Probab=99.24  E-value=5e-11  Score=74.42  Aligned_cols=83  Identities=18%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee----eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEe
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL----NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVL   78 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvIL   78 (90)
                      .+.++|||+++.+|+||||+.+.+++.-+..-    .+..++|...  ......++++++++.....+.|.+- ...-||
T Consensus        24 ~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p~~~~p~~I~GiGG~i~--vr~~~~i~IeI~g~~~~~~~lV~~~-tPvnLL  100 (132)
T 3slz_A           24 RITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKR--YRWTTDRKVHLATGKVTHSFLHVPD-CPYPLL  100 (132)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEECSCCCSEEEEEEEEECSSCEEE--EEEECCEEEEETTEEEEECCEECTT-SSSCEE
T ss_pred             EEEEEECCEEEEEEEeCCCCeEEEccccCCCCCCceEEEccCCEEE--EEEEeeeEEEECCeeecceEEEECC-CCccEE
Confidence            46799999999999999999999998776622    4556777543  2223346789999988888877532 245789


Q ss_pred             CcchhhhcCC
Q 045784           79 DTQWLSTFGL   88 (90)
Q Consensus        79 G~~wL~~~~p   88 (90)
                      |+|||++++-
T Consensus       101 Grd~Ltqlg~  110 (132)
T 3slz_A          101 GRDLLTKLKA  110 (132)
T ss_dssp             CHHHHHHHTC
T ss_pred             CHhhHhhCCc
Confidence            9999999863

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*

Probab=99.13  E-value=7.8e-10  Score=66.47  Aligned_cols=82  Identities=15%  Similarity=0.186  Sum_probs=63.5

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee---------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL---------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEG   73 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l---------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~   73 (90)
                      .+..+|+|++..||+||||..++++++.+.++         ....+-|+.+...  ...+++++.++.....++|.+.  
T Consensus        10 ~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~GiGG~i~v~--~~~i~i~i~g~~~~gtvlv~~t--   85 (104)
T 1fmb_A           10 TTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETF--STPVTIKKKGRHIKTRMLVADI--   85 (104)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEETTEEECCE--EEEEEEEETTEEEEEEEEEESC--
T ss_pred             EEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEeCCCeEEee--EeeeEEEECCeEEEEEEEECCC--
Confidence            57899999999999999999999997666542         2223346655555  5678999999998888888663  


Q ss_pred             ceEEeCcchhhhcCC
Q 045784           74 YDVVLDTQWLSTFGL   88 (90)
Q Consensus        74 ~dvILG~~wL~~~~p   88 (90)
                      ..=|+|.|||.+.+-
T Consensus        86 p~niiGRd~L~qlg~  100 (104)
T 1fmb_A           86 PVTILGRDILQDLGA  100 (104)
T ss_dssp             SSCEECHHHHHHTTC
T ss_pred             CCCEecHhHHhhcCc
Confidence            346899999998763

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...

Probab=99.02  E-value=4.4e-09  Score=62.62  Aligned_cols=82  Identities=12%  Similarity=0.054  Sum_probs=60.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee---eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL---NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l---~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+|||++..||+||||.++.+++.-....   ....+-|+.+.... ..++++++.++.....++|-|.  .-=|+|
T Consensus        10 ~vti~I~Gq~~e~LLDTGAD~TVl~~~~~Pg~w~pk~igGiGG~i~v~q-y~~i~iei~g~~~~gtvlV~~t--PvniiG   86 (99)
T 3ec0_A           10 VVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKE-YKNVEIEVLNKKVRATIMTGDT--PINIFG   86 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEESSCCCCSCCEEEEEEETTEEEEEEE-EEEEEEEETTEEEEEEEEEECC--SSCEEC
T ss_pred             eEEEEECCEEEEEEEecCCCceEEcCcccCCCCCceEEEecCCcEeeeE-EeeEEEEECCeEEEEEEEeCCC--CcCeee
Confidence            46789999999999999999999975322222   34445566565544 4568899999998888888553  235789


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .|+|.+.+
T Consensus        87 RnlLtqlG   94 (99)
T 3ec0_A           87 RNILTALG   94 (99)
T ss_dssp             HHHHHHHT
T ss_pred             hhhHhhcC
Confidence            99999875

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...

Probab=99.00  E-value=6.9e-09  Score=61.81  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=61.6

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee---eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL---NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l---~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+|+|++..||+||||..+++++.-...-   ....+.|+.+... ...++++++.++.....++|.|.. . =|+|
T Consensus        10 ~vtvkI~Gq~~eaLLDTGAD~TVl~~~~~p~~wkpk~igGiGG~i~v~-qy~qi~iei~g~~~~gtvlV~~tP-v-niiG   86 (99)
T 2hs1_A           10 LVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVR-QYDQIIIEIAGHKAIGTVLVGPTP-V-NIIG   86 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSEEESCCSSCCCCEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEESCCS-S-CEEC
T ss_pred             EEEEEECCEEEEEEeccCCCcEEEecccCCCCCCCcEEEeCCCcEeee-EeccEEEEEeCCEEEEEEEeCCCc-c-Cchh
Confidence            46789999999999999999999996544333   3334446555543 445788999999988888885543 3 4789


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .|||.+.+
T Consensus        87 Rd~Ltqlg   94 (99)
T 2hs1_A           87 RNLLTQIG   94 (99)
T ss_dssp             HHHHTTTT
T ss_pred             HhHHHHcC
Confidence            99998875

>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*

Probab=98.95  E-value=1.9e-08  Score=61.43  Aligned_cols=82  Identities=7%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             EEECCEEEEEEEcCCCCcccccHHhh---hee---eE-EecCCCeeeeeceeeeeEEEEecee-----EEeeEEEcC-CC
Q 045784            6 GRLVHKVVTVLIDSRRTHNFVRQELA---VKL---NV-MVASGERFSSLGTCLQTLIKLQGVP-----LIVDFYLLP-FE   72 (90)
Q Consensus         6 ~~i~~~~~~aLiDsGA~~~~i~~~~a---~~l---~v-~~a~G~~~~~~~~~~~~~i~i~~~~-----~~~~~~v~~-~~   72 (90)
                      .+|+|++..||+||||..+++++.-.   ...   .. ..+-|+.+... ...++++++.++.     ....++|.| ..
T Consensus        18 ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~p~~wkpk~~igGiGG~i~v~-qy~qv~iei~g~~~~~~~~~gtvlV~p~tP   96 (116)
T 2hah_A           18 IFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGT-NYINVHLEIRDENYKTQCIFGNVCVLEDNS   96 (116)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEGGGCCCTTCEEEEEEEEEETTEEEEEE-EEEEEEEEECCTTSCCEEEEEEEEEETTCC
T ss_pred             EEECCEEEEEEecCCCCcEEEcccccccCCCCCCCceEEecCCCceeee-EEccEEEEEeCCCCCcceeEEEEEECCCCC
Confidence            89999999999999999999998666   333   33 33446555443 4456788888877     777888888 43


Q ss_pred             CceEEeCcchhhhcCC
Q 045784           73 GYDVVLDTQWLSTFGL   88 (90)
Q Consensus        73 ~~dvILG~~wL~~~~p   88 (90)
                      ..-=|+|.|+|.+.+-
T Consensus        97 ~~vniiGRd~Ltqlg~  112 (116)
T 2hah_A           97 TPVNILGRDNMIKFNI  112 (116)
T ss_dssp             CSSEEECHHHHTTTTC
T ss_pred             ccccEecHHHHhHcCC
Confidence            2235789999998763

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=98.60  E-value=5.6e-07  Score=59.61  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=58.7

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhh-ee--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAV-KL--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~-~l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+|+|++..||+||||+++.+++--.. +-  .....-|..+... ....+++++.++.....++|-+.  ..=|+|
T Consensus        10 ~vtv~I~Gq~~e~LLDTGAD~TVl~~~~lpg~w~pk~igGIGG~i~vr-qy~~i~iei~g~~~~gtvlVg~t--PvnIiG   86 (203)
T 3ka2_A           10 LVTIRIGGQLKEALLDTGADDTVIEELNLPGXWKPKLIGGIAGFIKVR-QYDQIPVEIXGHKAIGTVLVGPT--PVNIIG   86 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEECSCCCSSCEEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEESCC--SSCEEC
T ss_pred             eEEEEECCEEEEEEEecCCCceEEecccCCCCCCceEEEEccCcEEEE-EEcceeEEEcCeEEEEEEeeCCC--CcCccc
Confidence            578999999999999999999999842111 11  2233335444432 34468899999998888888653  444899


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .|.|.+.+
T Consensus        87 Rd~LtqlG   94 (203)
T 3ka2_A           87 RNLLTQIG   94 (203)
T ss_dssp             HHHHTTTT
T ss_pred             hhhhhhcC
Confidence            99999876

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=98.17  E-value=2.5e-05  Score=51.69  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhe-e--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVK-L--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~-l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+++|++..+|+||||.++.+++--... -  +..-.-|.-+... ...++++++.++.....++|-|.  .-=|+|
T Consensus       114 ~~~iki~Gq~~e~LlDTGAD~TVl~~~~lpg~w~pk~igGiGg~i~v~-qy~~i~iei~g~~~~~tvlVgpt--PvniiG  190 (203)
T 3ka2_A          114 LVTIRIGGQLKEALLDTGADDTVIEELNLPGXWKPKLIGGIGGFIKVR-QYDQIPVEIXGHKAIGTVLVGPT--PVNIIG  190 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEECSCCCCSCCEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEESCC--SSCEEC
T ss_pred             cEEEEECCEEEeeeecccCCceeeecccCCCCCCceEEeeccceEEEE-EeccEEEEECCeEEEEEEEECCC--CcCeec
Confidence            3678999999999999999999997422211 1  2222335444332 33567889999988888888764  445679


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .|.|.+.+
T Consensus       191 Rn~LtqlG  198 (203)
T 3ka2_A          191 RNLLTQIG  198 (203)
T ss_dssp             HHHHGGGT
T ss_pred             hhhHHHhC
Confidence            99999876

>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*

Probab=98.00  E-value=1.4e-05  Score=49.19  Aligned_cols=79  Identities=18%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             ECCEEEEEEEcCCCCcccccHHhhhee-eEE------ecC-CCeeeeeceee-eeEEEEece--eEEeeEEEcCCC--Cc
Q 045784            8 LVHKVVTVLIDSRRTHNFVRQELAVKL-NVM------VAS-GERFSSLGTCL-QTLIKLQGV--PLIVDFYLLPFE--GY   74 (90)
Q Consensus         8 i~~~~~~aLiDsGA~~~~i~~~~a~~l-~v~------~a~-G~~~~~~~~~~-~~~i~i~~~--~~~~~~~v~~~~--~~   74 (90)
                      ++|+...||+||||..+++++.-...- +..      +.+ |+.+... ... .+++++.++  .....+.|.|..  ..
T Consensus        27 i~gq~~eaLLDTGAD~TVl~~~~lP~~W~k~~~~~~~igGIGG~i~v~-qy~~~i~iei~g~~g~~~~tvlV~P~~~~tP  105 (124)
T 2rsp_A           27 QRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMR-KSRDMIELGVINRDGSLERPLLLFPAVAMVR  105 (124)
T ss_dssp             CSEEEEEEEECTTCSSCEEETTTSCTTSCEEECC---------CCCEE-EESSCEEEEEECTTSCBCCCEEECCEEESCS
T ss_pred             CCCEEEEEEecCCCCcEEEecccCCCcceeeccccceeeecCceEeeE-EeCCceEEEEeCCCCcEEEEEEECcCCCCCc
Confidence            899999999999999999986444222 211      111 2222222 233 567777776  555667777731  12


Q ss_pred             eEEeCcchhhhcC
Q 045784           75 DVVLDTQWLSTFG   87 (90)
Q Consensus        75 dvILG~~wL~~~~   87 (90)
                      -=|+|.|.|.+.+
T Consensus       106 vnIiGRdlLtqlG  118 (124)
T 2rsp_A          106 GSILGRDCLQGLG  118 (124)
T ss_dssp             SEEECHHHHHHTT
T ss_pred             eeEECHhHHhhCC
Confidence            3578999999876

>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3

Probab=97.98  E-value=4.2e-05  Score=48.25  Aligned_cols=77  Identities=14%  Similarity=0.083  Sum_probs=53.5

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee--------eE---------------------EecCCCe-------eeeeceeeee
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL--------NV---------------------MVASGER-------FSSLGTCLQT   53 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l--------~v---------------------~~a~G~~-------~~~~~~~~~~   53 (90)
                      |.++.|-|||||..|-|+..-.+.+        ..                     +-.+|..       -.....+-..
T Consensus        17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV~~   96 (146)
T 2pma_A           17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLL   96 (146)
T ss_dssp             TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEEEE
T ss_pred             CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEEEE
Confidence            6779999999999999998877654        11                     1122320       0111223356


Q ss_pred             EEEEeceeEEeeEEEcCC--CCceEEeCcchhhhc
Q 045784           54 LIKLQGVPLIVDFYLLPF--EGYDVVLDTQWLSTF   86 (90)
Q Consensus        54 ~i~i~~~~~~~~~~v~~~--~~~dvILG~~wL~~~   86 (90)
                      .+.+|+.....+|.+.+=  ..|+++||.+||++.
T Consensus        97 ~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~  131 (146)
T 2pma_A           97 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDF  131 (146)
T ss_dssp             EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHT
T ss_pred             EEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhC
Confidence            788999999999999985  459999999999764

>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A

Probab=97.96  E-value=3.3e-05  Score=46.86  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee-eE----EecC--CCeeeeeceeeeeEEE--EeceeEEeeEEEcCCCCc
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-NV----MVAS--GERFSSLGTCLQTLIK--LQGVPLIVDFYLLPFEGY   74 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-~v----~~a~--G~~~~~~~~~~~~~i~--i~~~~~~~~~~v~~~~~~   74 (90)
                      +..+|+|++..||+||||..+.++..-.... +-    +.-.  |+.+.... ......+  +.++.-....+|.+-...
T Consensus        12 vti~I~Gq~~eaLLDTGADdTVi~~~~lpg~W~p~~~~k~igGIGG~i~v~q-y~~~~~~~~i~g~k~i~tvlV~~ptPv   90 (114)
T 3sqf_A           12 LTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQ-SSKYLTWRDKENNSGLIKPFVIPNLPV   90 (114)
T ss_dssp             EEEEETTEEEEEEECTTCSSCEEEGGGSCTTSCEEECCCCCTTCCGGGCCEE-ESSCEEEECTTCCEEEECCEEETTCSS
T ss_pred             EEEEECCEEEEEEEccCCCceEEecccCCCCcccCcCceEEEeccceEEEEE-eccceEEEecCCCEEEEEEEECCCCcc
Confidence            6789999999999999999999986544322 22    1111  33332221 1122222  566665555566532233


Q ss_pred             eEEeCcchhhhcC
Q 045784           75 DVVLDTQWLSTFG   87 (90)
Q Consensus        75 dvILG~~wL~~~~   87 (90)
                      + |+|.|-|.+.+
T Consensus        91 N-IiGRn~LtqlG  102 (114)
T 3sqf_A           91 N-LWGRDLLSQMK  102 (114)
T ss_dssp             C-EECHHHHTTSC
T ss_pred             c-EEchhhHhhcC
Confidence            3 57999998875

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*

Probab=97.70  E-value=0.00012  Score=44.40  Aligned_cols=85  Identities=9%  Similarity=0.106  Sum_probs=50.7

Q ss_pred             EEEEEC-----CEEEEEEEcCCCCcccccHHhhhee-eE----EecCCCeeeeeceeeeeEEEEec----eeEEeeEEEc
Q 045784            4 VIGRLV-----HKVVTVLIDSRRTHNFVRQELAVKL-NV----MVASGERFSSLGTCLQTLIKLQG----VPLIVDFYLL   69 (90)
Q Consensus         4 v~~~i~-----~~~~~aLiDsGA~~~~i~~~~a~~l-~v----~~a~G~~~~~~~~~~~~~i~i~~----~~~~~~~~v~   69 (90)
                      +..+|+     |+...||+||||..+.+.+.-.... +.    .+..++..........+++.+..    .+.......+
T Consensus        13 vtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lPg~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpfr~~pv~l~~~lv   92 (116)
T 3liy_A           13 IKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLV   92 (116)
T ss_dssp             EEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSCTTCCEEECCEEETTEEESSSEEEESSCEEEECTTCCSCEEESSCEE
T ss_pred             EEEEEccccCCCeEeEEEeccCCCccEEecccCCCCCcccccceEeecccceeeeEecCCCeEEEeccCCcceeeceEEE
Confidence            577899     9999999999999999997655544 33    12222222222233445555553    2222222223


Q ss_pred             CCCCceEEeCcchhhhcCC
Q 045784           70 PFEGYDVVLDTQWLSTFGL   88 (90)
Q Consensus        70 ~~~~~dvILG~~wL~~~~p   88 (90)
                      +....=-|+|.|-|++.+.
T Consensus        93 ~~~~~w~iigRd~l~q~q~  111 (116)
T 3liy_A           93 DTKNNWAIIGRDALQQCQG  111 (116)
T ss_dssp             ETTSCCCEECHHHHHHTTC
T ss_pred             cCCCceeEechhHHhhhcc
Confidence            3333446789999998764

>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}

Probab=97.00  E-value=0.018  Score=33.74  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee------eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEE
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL------NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVV   77 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvI   77 (90)
                      +.+.+.|..+.+.-||||+...|.+.|...-      .++.-.|++..   ...-++++++|+...++..--+++ |=+|
T Consensus        10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E~PI~~~~I~TIHG~k~q---~vYYl~fKv~GRKveaEVi~sp~d-Yvli   85 (107)
T 2jys_A           10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKTIHGEKQQ---DVYYLTFKVQGRKVEAEVLASPYD-YILL   85 (107)
T ss_dssp             EEEEETTEEEEEEECTTCSSEEEEGGGTTTCCCSEEEEEECSSCEEEE---EEEEEEEEESSCEEEEEEEEESSS-SEEE
T ss_pred             eeEEEeCcEEEEEecCCCeEEEcchHHhcccccccceEEEEecCceec---eEEEEEEEEcCeEEEEEEecCccc-EEEE
Confidence            5678999999999999999999999998876      45666676543   234578999999988887766532 1111


Q ss_pred             e--Ccchhhhc
Q 045784           78 L--DTQWLSTF   86 (90)
Q Consensus        78 L--G~~wL~~~   86 (90)
                      -  -.||+++.
T Consensus        86 ~P~DiPW~~~~   96 (107)
T 2jys_A           86 NPSDVPWLMKK   96 (107)
T ss_dssp             CTTTCHHHHSC
T ss_pred             cCcCccccccC
Confidence            1  35787654

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=95.20  E-value=0.064  Score=35.07  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             EEEEEcCCCCcccccHHhhhee-----eEEecCCC-eeeeec--eeeeeEEEEeceeEEe---------------eEE--
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL-----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIV---------------DFY--   67 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~---------------~~~--   67 (90)
                      ..+++|||++..++.++.++++     .....+|. .+.|..  ..+.+.+.+++..+..               .+.  
T Consensus       121 ~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~  200 (241)
T 1lya_B          121 CEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSG  200 (241)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHHHHHTCEEEETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEES
T ss_pred             CEEEEECCCccccCCHHHHHHHHHHhCCeeccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEE
Confidence            5799999999999999999888     11112232 233321  2345666666654421               122  


Q ss_pred             EcCC-----CCceEEeCcchhhhcC
Q 045784           68 LLPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 v~~~-----~~~dvILG~~wL~~~~   87 (90)
                      +.+.     .+...|||..||+.+.
T Consensus       201 ~~~~~~~~~~~~~~ilG~~fl~~~y  225 (241)
T 1lya_B          201 FMGMDIPPPSGPLWILGDVFIGRYY  225 (241)
T ss_dssp             EEECCCCTTTCCCEEECHHHHTTEE
T ss_pred             EEecccCCCCCCeEEechHHhcceE
Confidence            2222     2346899999999764

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=95.18  E-value=0.063  Score=36.91  Aligned_cols=82  Identities=7%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             EEECCEE-----EEEEEcCCCCcccccHHhhhee-----eEEecCCC----eeeeec--eeeeeEEEEeceeEEee----
Q 045784            6 GRLVHKV-----VTVLIDSRRTHNFVRQELAVKL-----NVMVASGE----RFSSLG--TCLQTLIKLQGVPLIVD----   65 (90)
Q Consensus         6 ~~i~~~~-----~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~----~~~~~~--~~~~~~i~i~~~~~~~~----   65 (90)
                      ..++++.     ..+++|||++..++.++.++++     .....+|.    .+.|..  ..+.+.+.+++..+..+    
T Consensus       202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y  281 (330)
T 1yg9_A          202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYY  281 (330)
T ss_dssp             EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHH
T ss_pred             EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHh
Confidence            3566655     4699999999999999999988     11222341    233332  24567788887665431    


Q ss_pred             -------EE--EcCC-CCceEEeCcchhhhcC
Q 045784           66 -------FY--LLPF-EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 -------~~--v~~~-~~~dvILG~~wL~~~~   87 (90)
                             +.  +.+. .+...|||..||+.+.
T Consensus       282 ~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y  313 (330)
T 1yg9_A          282 IQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYY  313 (330)
T ss_dssp             EEEETTEEEESEEEETTCSSEEECHHHHTTEE
T ss_pred             cccCCCcEEEEEEeCCCCCeEEecHHHhhheE
Confidence                   11  2221 2345899999999864

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=95.08  E-value=0.02  Score=39.35  Aligned_cols=76  Identities=9%  Similarity=-0.023  Sum_probs=43.9

Q ss_pred             EEEEEEcCCCCcccccHH----hhhee--eEEecCCCeeeeece-eeeeEEEEeceeEEee------------EE--EcC
Q 045784           12 VVTVLIDSRRTHNFVRQE----LAVKL--NVMVASGERFSSLGT-CLQTLIKLQGVPLIVD------------FY--LLP   70 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~----~a~~l--~v~~a~G~~~~~~~~-~~~~~i~i~~~~~~~~------------~~--v~~   70 (90)
                      +..+++|||++..++.++    +++.+  .+..++.-.+.|... .+.+.+.+++..+..+            +.  +.+
T Consensus       212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~C~~~i~~  291 (325)
T 2apr_A          212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQGQCIAGFGY  291 (325)
T ss_dssp             CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEECSCGGGCCCEEEEETTEEEEECGGGGEEEEETTEEEESEEE
T ss_pred             CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHEEEcCCCCeEEEEEEc
Confidence            457999999999999999    55555  222121122333322 3556677765433211            11  111


Q ss_pred             CCCceEEeCcchhhhcC
Q 045784           71 FEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        71 ~~~~dvILG~~wL~~~~   87 (90)
                      ......|||..||+.+.
T Consensus       292 ~~~~~~iLG~~fl~~~y  308 (325)
T 2apr_A          292 GNWGFAIIGDTFLKNNY  308 (325)
T ss_dssp             ESSSSEEECHHHHTTEE
T ss_pred             CCCCCEEECHHHhcceE
Confidence            22345899999999764

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=95.02  E-value=0.098  Score=37.88  Aligned_cols=82  Identities=12%  Similarity=0.129  Sum_probs=51.7

Q ss_pred             EEECC---EEEEEEEcCCCCcccccHHhhhee----eEEe-c-CCC-eeeee-ceeeeeEEEEeceeEEee---E-----
Q 045784            6 GRLVH---KVVTVLIDSRRTHNFVRQELAVKL----NVMV-A-SGE-RFSSL-GTCLQTLIKLQGVPLIVD---F-----   66 (90)
Q Consensus         6 ~~i~~---~~~~aLiDsGA~~~~i~~~~a~~l----~v~~-a-~G~-~~~~~-~~~~~~~i~i~~~~~~~~---~-----   66 (90)
                      ..+++   ....+++|||++..++.++.++++    .... . .|. .+.|. ...+.+.+.+++..+..+   +     
T Consensus       322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi~~~~  401 (451)
T 3qvc_A          322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYLEPLE  401 (451)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHEEECT
T ss_pred             EEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHheeecc
Confidence            45555   467899999999999999999988    1111 1 222 23443 233566777777655431   1     


Q ss_pred             ---------EEcCCC--CceEEeCcchhhhcC
Q 045784           67 ---------YLLPFE--GYDVVLDTQWLSTFG   87 (90)
Q Consensus        67 ---------~v~~~~--~~dvILG~~wL~~~~   87 (90)
                               .+.+..  +...|||..||+.+.
T Consensus       402 ~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Y  433 (451)
T 3qvc_A          402 NIFSALCMLNIVPIDLEKNTFVLGDPFMRKYF  433 (451)
T ss_dssp             TTSTTEEEECEEECCCSTTEEEECHHHHHHEE
T ss_pred             cCCCCeEEEEEEeCCCCCCCEEECHHHhhcEE
Confidence                     122222  356899999999864

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=95.01  E-value=0.069  Score=36.49  Aligned_cols=82  Identities=9%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             EEECCEEE------EEEEcCCCCcccccHHhhhee-----eEEecCCC-eeeee--ceeeeeEEEEeceeEEee------
Q 045784            6 GRLVHKVV------TVLIDSRRTHNFVRQELAVKL-----NVMVASGE-RFSSL--GTCLQTLIKLQGVPLIVD------   65 (90)
Q Consensus         6 ~~i~~~~~------~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~-~~~~~--~~~~~~~i~i~~~~~~~~------   65 (90)
                      ..++++.+      .+++|||++..++.++.++++     .....+|. .+.|.  ...+.+.+.+++..+...      
T Consensus       198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~  277 (323)
T 3cms_A          198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTS  277 (323)
T ss_dssp             EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEE
T ss_pred             EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcEEEECCCCccCceEEEEECCEEEEECHHHhcc
Confidence            35666654      699999999999999999887     11112222 12232  123456777777655321      


Q ss_pred             -----EE--EcCC-CCceEEeCcchhhhcC
Q 045784           66 -----FY--LLPF-EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 -----~~--v~~~-~~~dvILG~~wL~~~~   87 (90)
                           +.  +.+. .+...|||..||+.+.
T Consensus       278 ~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y  307 (323)
T 3cms_A          278 QDQGFCTSGFQSENHSQKWILGDVFIREYY  307 (323)
T ss_dssp             EETTEEEESEEEC---CCEEECHHHHTTEE
T ss_pred             CCCCEEEEEEEeCCCCCcEEECHHHhhceE
Confidence                 22  2233 2356899999999764

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=94.86  E-value=0.087  Score=35.95  Aligned_cols=82  Identities=9%  Similarity=0.032  Sum_probs=50.9

Q ss_pred             EEECCEE-----EEEEEcCCCCcccccHHhhhee----eEEecCCC-eeeeec--eeeeeEEEEeceeEEe---------
Q 045784            6 GRLVHKV-----VTVLIDSRRTHNFVRQELAVKL----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIV---------   64 (90)
Q Consensus         6 ~~i~~~~-----~~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~---------   64 (90)
                      ..++++.     ..+++|||++..++.++.++++    .....+|. ...|..  ..+.+.+.+++..+..         
T Consensus       197 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~  276 (324)
T 1am5_A          197 ITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD  276 (324)
T ss_dssp             EEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES
T ss_pred             EEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCcccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC
Confidence            3466655     5799999999999999998887    11122332 122321  2355777777765532         


Q ss_pred             --eEE--EcCC-----CCceEEeCcchhhhcC
Q 045784           65 --DFY--LLPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        65 --~~~--v~~~-----~~~dvILG~~wL~~~~   87 (90)
                        .+.  +.+.     .+...|||..||+.+.
T Consensus       277 ~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y  308 (324)
T 1am5_A          277 QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY  308 (324)
T ss_dssp             SSCEEECEEECCSCCSSSCEEEECHHHHHHEE
T ss_pred             CCeEEEEEEECccCCCCCCcEEEChHHhccEE
Confidence              121  2222     2356899999999864

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=94.69  E-value=0.22  Score=34.90  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             EEECCE---EEEEEEcCCCCcccccHHhhhee----eE--EecCCC-eeeeec-eeeeeEEEEeceeEEe----------
Q 045784            6 GRLVHK---VVTVLIDSRRTHNFVRQELAVKL----NV--MVASGE-RFSSLG-TCLQTLIKLQGVPLIV----------   64 (90)
Q Consensus         6 ~~i~~~---~~~aLiDsGA~~~~i~~~~a~~l----~v--~~a~G~-~~~~~~-~~~~~~i~i~~~~~~~----------   64 (90)
                      ..++++   ...|++|||.+..++.++.++++    ..  ...+|. ...|.. ..+.+.+.++|..+..          
T Consensus       247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi~~~~  326 (375)
T 1miq_A          247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPIL  326 (375)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSEEESS
T ss_pred             EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCcccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhEeecc
Confidence            567774   56899999999999999999888    11  112232 123322 2345566666544321          


Q ss_pred             -----eEE--EcCCC--CceEEeCcchhhhcC
Q 045784           65 -----DFY--LLPFE--GYDVVLDTQWLSTFG   87 (90)
Q Consensus        65 -----~~~--v~~~~--~~dvILG~~wL~~~~   87 (90)
                           .+.  +.+..  ....|||..||+.+.
T Consensus       327 ~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~y  358 (375)
T 1miq_A          327 EVDDTLCMITMLPVDIDSNTFILGDPFMRKYF  358 (375)
T ss_dssp             SSSCSEEEESEEECCSSSSEEEECHHHHHHEE
T ss_pred             CCCCCeEEEEEEECCCCCCcEEECHHHhccEE
Confidence                 111  22222  246899999999764

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=94.63  E-value=0.032  Score=38.26  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=47.9

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--eE---Ee--cCCC-eeeeeceeeeeEEEEeceeEEee-------------EE--
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--NV---MV--ASGE-RFSSLGTCLQTLIKLQGVPLIVD-------------FY--   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~v---~~--a~G~-~~~~~~~~~~~~i~i~~~~~~~~-------------~~--   67 (90)
                      ....+++|||.+..++.++.++++  .+   ..  .+|. .+.|....+.+.+.+++..+..+             +.  
T Consensus       207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~~~  286 (323)
T 1izd_A          207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGG  286 (323)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEEEES
T ss_pred             CCceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeEEEE
Confidence            456799999999999999998887  21   11  1221 23343334567777777654321             11  


Q ss_pred             EcCCC-CceEEeCcchhhhcC
Q 045784           68 LLPFE-GYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 v~~~~-~~dvILG~~wL~~~~   87 (90)
                      +.+.. ....|||..||+.+.
T Consensus       287 i~~~~~~~~~IlG~~fl~~~y  307 (323)
T 1izd_A          287 IQSNSGIGFSIFGDVFLKSQY  307 (323)
T ss_dssp             EEECTTTSSEEECHHHHTTEE
T ss_pred             EEcCCCCCcEEEChHHhcCEE
Confidence            22222 245899999999764

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=94.48  E-value=0.18  Score=34.19  Aligned_cols=81  Identities=9%  Similarity=0.087  Sum_probs=49.3

Q ss_pred             EECCEE------EEEEEcCCCCcccccHHhhhee----eEEe-cCCC-eeeeec--eeeeeEEEEeceeEEee-------
Q 045784            7 RLVHKV------VTVLIDSRRTHNFVRQELAVKL----NVMV-ASGE-RFSSLG--TCLQTLIKLQGVPLIVD-------   65 (90)
Q Consensus         7 ~i~~~~------~~aLiDsGA~~~~i~~~~a~~l----~v~~-a~G~-~~~~~~--~~~~~~i~i~~~~~~~~-------   65 (90)
                      .++++.      ..+++|||++..++.++.++++    .... .+|. .+.|..  ..+.+.+.+++..+...       
T Consensus       196 ~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~  275 (320)
T 4aa9_A          196 TINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSK  275 (320)
T ss_dssp             EETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEE
T ss_pred             EECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccC
Confidence            456654      4799999999999999999888    1111 2232 223322  23456777777654321       


Q ss_pred             ----EE--EcC-CCCceEEeCcchhhhcC
Q 045784           66 ----FY--LLP-FEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 ----~~--v~~-~~~~dvILG~~wL~~~~   87 (90)
                          +.  +.+ ..+...|||..||+.+.
T Consensus       276 ~~~~C~~~i~~~~~~~~~ilG~~fl~~~y  304 (320)
T 4aa9_A          276 DQGFCTSGFQGDNNSELWILGDVFIREYY  304 (320)
T ss_dssp             ETTEEEESEEEETTCCCEEECHHHHTTEE
T ss_pred             CCCeEEEEEEcCCCCCcEEEChHHhcceE
Confidence                11  112 12245899999999864

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=94.44  E-value=0.058  Score=36.91  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             EEEEEcCCCCcccccHHhhhee-----eEEecCCC-eeeeec--eeeeeEEEEeceeEEee-----------EE--EcCC
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL-----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIVD-----------FY--LLPF   71 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~-----------~~--v~~~   71 (90)
                      ..+++|||++..++.++.++++     .....+|. ...|..  ..+.+.+.+++..+...           +.  +.+.
T Consensus       212 ~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~~~~~~  291 (329)
T 1htr_B          212 CQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNGYCTVGVEPT  291 (329)
T ss_dssp             EEEEECTTCCSEEEEGGGHHHHHHHHTCEECTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECSSCEEESEEEE
T ss_pred             ceEEEecCCccEECCHHHHHHHHHHhCCeecCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEEEEEEC
Confidence            5799999999999999999888     11122332 233322  23556777777655321           11  2221


Q ss_pred             -----CCc-eEEeCcchhhhcC
Q 045784           72 -----EGY-DVVLDTQWLSTFG   87 (90)
Q Consensus        72 -----~~~-dvILG~~wL~~~~   87 (90)
                           .+. ..|||..||+.+.
T Consensus       292 ~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T 1htr_B          292 YLSSQNGQPLWILGDVFLRSYY  313 (329)
T ss_dssp             CCCCTTSSCEEEECHHHHTTEE
T ss_pred             CCCCCCCCceEEEChHHhccEE
Confidence                 133 6899999999764

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=94.36  E-value=0.2  Score=34.18  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             EEECCEEE-----EEEEcCCCCcccccHHhhhee----eE-EecCCC-eeeeec--eeeeeEEEEeceeEEee-------
Q 045784            6 GRLVHKVV-----TVLIDSRRTHNFVRQELAVKL----NV-MVASGE-RFSSLG--TCLQTLIKLQGVPLIVD-------   65 (90)
Q Consensus         6 ~~i~~~~~-----~aLiDsGA~~~~i~~~~a~~l----~v-~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~-------   65 (90)
                      ..++++.+     .+++|||++..++.++.++++    .. .-.+|. .+.|..  ..+.+.+.+++..+...       
T Consensus       201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~  280 (329)
T 1dpj_A          201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLE  280 (329)
T ss_dssp             EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEE
T ss_pred             EEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEec
Confidence            34566544     599999999999999999888    11 112222 123322  23456677776544321       


Q ss_pred             ----EE--EcCC-----CCceEEeCcchhhhcC
Q 045784           66 ----FY--LLPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 ----~~--v~~~-----~~~dvILG~~wL~~~~   87 (90)
                          +.  +.+.     .+...|||..||+.+.
T Consensus       281 ~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T 1dpj_A          281 VSGSCISAITPMDFPEPVGPLAIVGDAFLRKYY  313 (329)
T ss_dssp             ETTEEEECEEECCCCTTTCSEEEECHHHHTTEE
T ss_pred             CCCEEEEEEEecccCCCCCCcEEEChHHhcceE
Confidence                11  2222     2356899999999764

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=93.99  E-value=0.21  Score=34.16  Aligned_cols=75  Identities=13%  Similarity=0.064  Sum_probs=46.7

Q ss_pred             EEEEEcCCCCcccccHHhhhee-----eEEecCCCeeeeec--eeeeeEEEEeceeEEee---E------------E--E
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL-----NVMVASGERFSSLG--TCLQTLIKLQGVPLIVD---F------------Y--L   68 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~~~~~~~--~~~~~~i~i~~~~~~~~---~------------~--v   68 (90)
                      ..+++|||.+..++.++.++++     .....+|-.+.|..  ..+.+.+.+++..+...   +            .  +
T Consensus       221 ~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i  300 (341)
T 3k1w_A          221 CLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAI  300 (341)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHHHHHTCEECSSCEEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEBSE
T ss_pred             CEEEEECCCChhcCCHHHHHHHHHHcCCeecCCCeEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCeEEeEE
Confidence            5799999999999999999888     11222342233332  23456777777654321   1            1  1


Q ss_pred             cCC-----CCceEEeCcchhhhcC
Q 045784           69 LPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        69 ~~~-----~~~dvILG~~wL~~~~   87 (90)
                      .+.     .+...|||..||+.+.
T Consensus       301 ~~~~~~~~~~~~~iLG~~fl~~~y  324 (341)
T 3k1w_A          301 HAMDIPPPTGPTWALGATFIRKFY  324 (341)
T ss_dssp             EECCCCTTTCSCEEECHHHHTTEE
T ss_pred             EecccCCCCCCeEEEChHHhcceE
Confidence            111     1345899999999864

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=93.91  E-value=0.14  Score=35.18  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=24.0

Q ss_pred             EEECC-EEE----EEEEcCCCCcccccHHhhhee
Q 045784            6 GRLVH-KVV----TVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         6 ~~i~~-~~~----~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..+++ +.+    .+++|||.+..++.++.++++
T Consensus       195 i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l  228 (340)
T 1wkr_A          195 IRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY  228 (340)
T ss_dssp             EEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred             EEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence            45666 443    799999999999999999887

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=93.88  E-value=0.38  Score=34.76  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHHhh------hee-----------------eEEecCCCeeeeeceeeeeEEE
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQELA------VKL-----------------NVMVASGERFSSLGTCLQTLIK   56 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a------~~l-----------------~v~~a~G~~~~~~~~~~~~~i~   56 (90)
                      ..++..|+  .++..+++||||+..++...-.      ...                 .+..++|.   ..|....=.+.
T Consensus       139 Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs---~~G~~~~Dtv~  215 (451)
T 3qvc_A          139 SFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT---ISGIFSKDLVT  215 (451)
T ss_dssp             EEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE---EEEEEEEEEEE
T ss_pred             EEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE---EEEEEEEEEEE
Confidence            35667787  7999999999999998865322      111                 33444443   33433333566


Q ss_pred             EeceeEEeeEEEcCC----------CCceEEeCcch
Q 045784           57 LQGVPLIVDFYLLPF----------EGYDVVLDTQW   82 (90)
Q Consensus        57 i~~~~~~~~~~v~~~----------~~~dvILG~~w   82 (90)
                      +++......|-+...          ..+|-|||+.+
T Consensus       216 igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~  251 (451)
T 3qvc_A          216 IGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW  251 (451)
T ss_dssp             ETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred             ECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence            777665544544432          34789999876

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=93.71  E-value=0.12  Score=35.41  Aligned_cols=77  Identities=10%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--eE---Ee--cCCC-eeeeeceeeeeEEEEeceeEEee--------------EE-
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--NV---MV--ASGE-RFSSLGTCLQTLIKLQGVPLIVD--------------FY-   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~v---~~--a~G~-~~~~~~~~~~~~i~i~~~~~~~~--------------~~-   67 (90)
                      .+..+++|||.+..++.++.++++  .+   ..  .+|. .+.|....+.+.+.+++..+..+              +. 
T Consensus       206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~C~~  285 (323)
T 1bxo_A          206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLG  285 (323)
T ss_dssp             EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSCEEE
T ss_pred             CCceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCeEEE
Confidence            456899999999999999998877  11   11  1221 23343334566777777654321              11 


Q ss_pred             -EcCCC-CceEEeCcchhhhcC
Q 045784           68 -LLPFE-GYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 -v~~~~-~~dvILG~~wL~~~~   87 (90)
                       +.+.. ....|||..||+.+.
T Consensus       286 ~i~~~~~~~~~ILG~~fl~~~y  307 (323)
T 1bxo_A          286 GIQSNSGIGFSIFGDIFLKSQY  307 (323)
T ss_dssp             SEEECTTCSSEEECHHHHTTEE
T ss_pred             EEECCCCCCcEEEChHHHcCEE
Confidence             11222 235899999999764

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=93.68  E-value=0.42  Score=34.64  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHhh------he--e---------------eEEecCCCeeeeeceeeeeEEEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQELA------VK--L---------------NVMVASGERFSSLGTCLQTLIKL   57 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a------~~--l---------------~v~~a~G~~~~~~~~~~~~~i~i   57 (90)
                      .++..|+  .++..+++||||+..++...-.      ..  .               .+..++|.   ..|....=.+.+
T Consensus       141 ~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs---~~G~~~~Dtv~i  217 (453)
T 2bju_A          141 YGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT---VSGFFSKDLVTV  217 (453)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE---EEEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC---eEEEEEEEEEEE
Confidence            4567777  8999999999999998854321      11  0               34445554   234443335667


Q ss_pred             eceeEEeeEEEcCC----------CCceEEeCcch
Q 045784           58 QGVPLIVDFYLLPF----------EGYDVVLDTQW   82 (90)
Q Consensus        58 ~~~~~~~~~~v~~~----------~~~dvILG~~w   82 (90)
                      ++......|-+...          ..+|-|||+.|
T Consensus       218 g~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~  252 (453)
T 2bju_A          218 GNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW  252 (453)
T ss_dssp             TTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred             eCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence            77655544444321          24799999876

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=93.51  E-value=0.96  Score=31.86  Aligned_cols=78  Identities=14%  Similarity=0.207  Sum_probs=47.6

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHhh--------he--e---------------eEEecCCCeeeeeceeeeeEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQELA--------VK--L---------------NVMVASGERFSSLGTCLQTLI   55 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a--------~~--l---------------~v~~a~G~~~~~~~~~~~~~i   55 (90)
                      .++..|.  .++..+++||||+..++...-.        ..  +               .+...+|.   ..|....=.+
T Consensus        64 ~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~Dtv  140 (383)
T 2x0b_A           64 YGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT---VSGFLSQDII  140 (383)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE---EEEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc---EEEEEEeeEE
Confidence            4566676  6999999999999998854322        11  1               34445554   2344433356


Q ss_pred             EEeceeEEeeEEEcC--------CCCceEEeCcchh
Q 045784           56 KLQGVPLIVDFYLLP--------FEGYDVVLDTQWL   83 (90)
Q Consensus        56 ~i~~~~~~~~~~v~~--------~~~~dvILG~~wL   83 (90)
                      .+++......|-+..        ...+|-|||+.|=
T Consensus       141 ~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~~  176 (383)
T 2x0b_A          141 TVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFI  176 (383)
T ss_dssp             EETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSCG
T ss_pred             EEcCceEEEEEEEEEecCCcccccCCCceEeccCCC
Confidence            677765544443332        2358999998763

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=93.43  E-value=0.91  Score=31.66  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=48.2

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHHhhhe--------e---------------eEEecCCCeeeeeceeeeeEEE
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQELAVK--------L---------------NVMVASGERFSSLGTCLQTLIK   56 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~~--------l---------------~v~~a~G~~~~~~~~~~~~~i~   56 (90)
                      ...+..|.  .++..+++||||+..++.......        .               .+...+|.   ..|....=.+.
T Consensus        58 Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~Dtv~  134 (370)
T 3psg_A           58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS---MTGILGYDTVQ  134 (370)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE---EEEEEEEEEEE
T ss_pred             EEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce---EEEEEEEEEEe
Confidence            34667777  499999999999999886432211        0               34445554   23444333567


Q ss_pred             EeceeEE-eeEEEcCC--------CCceEEeCcch
Q 045784           57 LQGVPLI-VDFYLLPF--------EGYDVVLDTQW   82 (90)
Q Consensus        57 i~~~~~~-~~~~v~~~--------~~~dvILG~~w   82 (90)
                      +++.... ..|-+...        ..+|-|||+.|
T Consensus       135 ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~  169 (370)
T 3psg_A          135 VGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY  169 (370)
T ss_dssp             ETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             eCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence            7776654 34544432        23799999976

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=93.27  E-value=0.65  Score=31.75  Aligned_cols=77  Identities=17%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHHhhhee-------------eEEecCCCeeeeeceeeeeEEEEeceeEE-ee
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQELAVKL-------------NVMVASGERFSSLGTCLQTLIKLQGVPLI-VD   65 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~~l-------------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-~~   65 (90)
                      ..++..|.  .++..+++||||+..++..+  ..+             .+...+|.   ..|....=.+.+++.... ..
T Consensus        14 Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs---~~G~~~~Dtv~~g~~~v~~~~   88 (340)
T 1wkr_A           14 YVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS---FSGTEYTDTVTLGSLTIPKQS   88 (340)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE---EEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE---EEEEEEEEEEEECCEEEcceE
Confidence            35677788  89999999999999988642  111             44555664   234443334566664432 22


Q ss_pred             EEEcC----CCCceEEeCcchh
Q 045784           66 FYLLP----FEGYDVVLDTQWL   83 (90)
Q Consensus        66 ~~v~~----~~~~dvILG~~wL   83 (90)
                      |-+..    ...+|-|||+.+-
T Consensus        89 fg~~~~~~~~~~~~GilGLg~~  110 (340)
T 1wkr_A           89 IGVASRDSGFDGVDGILGVGPV  110 (340)
T ss_dssp             EEEEEEEESCTTCSEEEECSCG
T ss_pred             EEEEEccCCCcCCCcEEECCcc
Confidence            32221    2368999998763

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=92.94  E-value=0.9  Score=30.91  Aligned_cols=27  Identities=7%  Similarity=-0.021  Sum_probs=23.0

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|..++..+++||||+..++..
T Consensus        17 Y~~~i~iG~Q~~~v~~DTGSs~lWv~~   43 (323)
T 1bxo_A           17 YITPVTIGGTTLNLNFDTGSADLWVFS   43 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred             EEEEEEECCEEEEEEEeCCCcceEEec
Confidence            356778889999999999999998854

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=92.72  E-value=1  Score=30.66  Aligned_cols=27  Identities=7%  Similarity=-0.029  Sum_probs=23.0

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|..++..+++||||+..++..
T Consensus        17 Y~~~i~iG~q~~~v~~DTGSs~lWv~~   43 (323)
T 1izd_A           17 YITQVTVGDDTLGLDFDTGSADLWVFS   43 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred             EEEEEEECCEEEEEEEcCCCcceEEec
Confidence            356778889999999999999998854

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=92.47  E-value=0.59  Score=32.19  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             EEECCEE------EEEEEcCCCCcccccHHhhhee----eEEecCCC-eeeeec--eeeeeEEEEeceeEEe--------
Q 045784            6 GRLVHKV------VTVLIDSRRTHNFVRQELAVKL----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIV--------   64 (90)
Q Consensus         6 ~~i~~~~------~~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~--------   64 (90)
                      ..++++.      ..+++|||++..++.++.++++    ......|. .+.|..  ..+.+.+.+++..+..        
T Consensus       210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~  289 (351)
T 1tzs_A          210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLL  289 (351)
T ss_dssp             EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSSSEEECGGGGGGSCCEEEEETTEEEEECTTTSEEC
T ss_pred             EEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCcccCCeEEEeCCCCccCCcEEEEECCEEEEECHHHhEee
Confidence            4566665      4799999999999999999887    11111122 122321  2345666666654421        


Q ss_pred             -------eEE--EcCC-----CCceEEeCcchhhhcC
Q 045784           65 -------DFY--LLPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        65 -------~~~--v~~~-----~~~dvILG~~wL~~~~   87 (90)
                             .+.  +.+.     .+...|||..||+.+.
T Consensus       290 ~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y  326 (351)
T 1tzs_A          290 DFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY  326 (351)
T ss_dssp             C-----CCEEESEEECCCCTTTCSCEEECHHHHHHEE
T ss_pred             ccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheE
Confidence                   111  2221     2346899999999864

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=92.44  E-value=0.34  Score=35.08  Aligned_cols=82  Identities=7%  Similarity=0.036  Sum_probs=49.2

Q ss_pred             EEECC---EEEEEEEcCCCCcccccHHhhhee-----eEEecCC-C-eeeeec-eeeeeEEEEeceeEEee---------
Q 045784            6 GRLVH---KVVTVLIDSRRTHNFVRQELAVKL-----NVMVASG-E-RFSSLG-TCLQTLIKLQGVPLIVD---------   65 (90)
Q Consensus         6 ~~i~~---~~~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G-~-~~~~~~-~~~~~~i~i~~~~~~~~---------   65 (90)
                      ..+++   ....+++|||++..++.++.++++     .....+| . ...|.. ..+.+.+.++|..+..+         
T Consensus       323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi~~~~  402 (453)
T 2bju_A          323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIE  402 (453)
T ss_dssp             EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTSSCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHEEECT
T ss_pred             EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHHhCCcccCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhEeecc
Confidence            44555   346799999999999999999888     1112233 1 223322 23456666666544321         


Q ss_pred             ------EE--EcCCC--CceEEeCcchhhhcC
Q 045784           66 ------FY--LLPFE--GYDVVLDTQWLSTFG   87 (90)
Q Consensus        66 ------~~--v~~~~--~~dvILG~~wL~~~~   87 (90)
                            +.  +.+..  ....|||..||+.+.
T Consensus       403 ~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~y  434 (453)
T 2bju_A          403 DVGPGLCMLNIIGLDFPVPTFILGDPFMRKYF  434 (453)
T ss_dssp             TTSTTEEEECEEECCCSSCEEEECHHHHHHEE
T ss_pred             cCCCceEEEEEEeCCCCCCCEEECHHHhhcEE
Confidence                  11  22222  236899999999764

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=92.30  E-value=0.27  Score=34.47  Aligned_cols=76  Identities=18%  Similarity=0.329  Sum_probs=45.2

Q ss_pred             EEEEEC--CEEEEEEEcCCCCcccccHH-h-----hhe--e---------------eEEecCCCeeeeeceeeeeEEEEe
Q 045784            4 VIGRLV--HKVVTVLIDSRRTHNFVRQE-L-----AVK--L---------------NVMVASGERFSSLGTCLQTLIKLQ   58 (90)
Q Consensus         4 v~~~i~--~~~~~aLiDsGA~~~~i~~~-~-----a~~--l---------------~v~~a~G~~~~~~~~~~~~~i~i~   58 (90)
                      ++..|+  .++..+++||||+..++... |     ...  +               .+...+|.   ..|....=.+.++
T Consensus        66 ~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~Dtv~ig  142 (375)
T 1miq_A           66 GEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT---VKGFFSKDLVTLG  142 (375)
T ss_dssp             CCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE---EEEEEEEEEEEET
T ss_pred             EEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe---EEEEEEEEEEEEc
Confidence            445666  79999999999999987543 2     111  0               23344443   2344333356666


Q ss_pred             ceeEEeeEEEcCC----------CCceEEeCcch
Q 045784           59 GVPLIVDFYLLPF----------EGYDVVLDTQW   82 (90)
Q Consensus        59 ~~~~~~~~~v~~~----------~~~dvILG~~w   82 (90)
                      +......|-+...          ..+|-|||+.|
T Consensus       143 ~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~  176 (375)
T 1miq_A          143 HLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW  176 (375)
T ss_dssp             TEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred             CceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence            6654444443332          45799999876

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=92.16  E-value=0.39  Score=32.80  Aligned_cols=28  Identities=36%  Similarity=0.533  Sum_probs=23.8

Q ss_pred             EECCEE-----EEEEEcCCCCcccccHHhhhee
Q 045784            7 RLVHKV-----VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         7 ~i~~~~-----~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .++++.     ..+++|||.+..++.++.++++
T Consensus       202 ~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i  234 (342)
T 3pvk_A          202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQI  234 (342)
T ss_dssp             EETTEEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred             EECCEEecCCCceEEEeCCCCCeecCHHHHHHH
Confidence            456654     5799999999999999999988

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=92.04  E-value=0.27  Score=33.57  Aligned_cols=77  Identities=14%  Similarity=0.104  Sum_probs=47.1

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--eE---Ee--cCC-CeeeeeceeeeeEEEEeceeEEee---------------EE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--NV---MV--ASG-ERFSSLGTCLQTLIKLQGVPLIVD---------------FY   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~v---~~--a~G-~~~~~~~~~~~~~i~i~~~~~~~~---------------~~   67 (90)
                      ....+++|||++..++.++.++++  .+   ..  .+| -.+.|....+.+.+.+++..+..+               +.
T Consensus       207 ~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~  286 (325)
T 1ibq_A          207 SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCY  286 (325)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTSTTCBCCSSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEE
T ss_pred             CCceEEEeCCCCcEeCCHHHHHHHHHhCCCceEcCcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCCeEE
Confidence            356799999999999999998887  22   11  112 223443334566777776554321               11


Q ss_pred             --EcCCC-CceEEeCcchhhhcC
Q 045784           68 --LLPFE-GYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 --v~~~~-~~dvILG~~wL~~~~   87 (90)
                        +.+.. ....|||..||+.+.
T Consensus       287 ~~i~~~~~~~~~iLG~~fl~~~y  309 (325)
T 1ibq_A          287 GGIQSNSGLGLSILGDVFLKSQY  309 (325)
T ss_dssp             ESEEECTTTCSEEECHHHHTTEE
T ss_pred             EEEEcCCCCCceEEChHHhcCEE
Confidence              11222 235899999999764

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=92.02  E-value=0.24  Score=34.28  Aligned_cols=29  Identities=14%  Similarity=0.137  Sum_probs=23.9

Q ss_pred             EEECCEEE------EEE-EcCCCCcccccHHhhhee
Q 045784            6 GRLVHKVV------TVL-IDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         6 ~~i~~~~~------~aL-iDsGA~~~~i~~~~a~~l   34 (90)
                      ..++++.+      .++ ||||++..++.++.++++
T Consensus       218 i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l  253 (361)
T 1mpp_A          218 VKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKV  253 (361)
T ss_dssp             EEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHH
T ss_pred             EEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHH
Confidence            34666543      689 999999999999999888

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=92.02  E-value=0.52  Score=32.19  Aligned_cols=77  Identities=9%  Similarity=0.050  Sum_probs=46.7

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--eE---Ee--cCCC-eeeeeceeeeeEEEEeceeEEee---------------EE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--NV---MV--ASGE-RFSSLGTCLQTLIKLQGVPLIVD---------------FY   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~v---~~--a~G~-~~~~~~~~~~~~i~i~~~~~~~~---------------~~   67 (90)
                      ....+++|||.+..++.++.++++  .+   ..  .+|. ...|....+.+.+.+++..+..+               +.
T Consensus       211 ~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~  290 (329)
T 1oew_A          211 TSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCF  290 (329)
T ss_dssp             EEEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEE
T ss_pred             CCceEEEeCCCCCEECCHHHHHHHHHhCCCcEEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEE
Confidence            356799999999999999998877  11   11  1121 23343334566677776554321               11


Q ss_pred             --EcCCC-CceEEeCcchhhhcC
Q 045784           68 --LLPFE-GYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 --v~~~~-~~dvILG~~wL~~~~   87 (90)
                        +.+.. ....|||..||+.+.
T Consensus       291 ~~i~~~~~~~~~iLG~~fl~~~y  313 (329)
T 1oew_A          291 GGIQSSAGIGINIFGDVALKAAF  313 (329)
T ss_dssp             ESEEESTTTSSEEECHHHHTTEE
T ss_pred             EEEEeCCCCCceEEChHHhcCEE
Confidence              11222 245899999998763

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=91.88  E-value=1.7  Score=29.48  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHH--------hhhee-----------------eEEecCCCeeeeeceeeeeE
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQE--------LAVKL-----------------NVMVASGERFSSLGTCLQTL   54 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~--------~a~~l-----------------~v~~a~G~~~~~~~~~~~~~   54 (90)
                      ..++..|.  .++..+++|||++..++...        |...-                 .+..++|.   ..|....=.
T Consensus        20 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs---~~G~~~~D~   96 (341)
T 3k1w_A           20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT---VSGFLSQDI   96 (341)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE---EEEEEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE---EEEEEEEEE
Confidence            34667777  59999999999999988532        21111                 33444443   234433335


Q ss_pred             EEEeceeEEeeEEEcC--------CCCceEEeCcch
Q 045784           55 IKLQGVPLIVDFYLLP--------FEGYDVVLDTQW   82 (90)
Q Consensus        55 i~i~~~~~~~~~~v~~--------~~~~dvILG~~w   82 (90)
                      +.+++......|-+..        ...+|-|||+.+
T Consensus        97 v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~  132 (341)
T 3k1w_A           97 ITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF  132 (341)
T ss_dssp             EEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             EEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence            6667665533444332        223689999876

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=91.88  E-value=0.52  Score=33.20  Aligned_cols=75  Identities=13%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             EEEEEcCCCCcccccHHhhhee----eEEecCCC-eeeeec--eeeeeEEEEeceeEEee---------------EE--E
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL----NVMVASGE-RFSSLG--TCLQTLIKLQGVPLIVD---------------FY--L   68 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---------------~~--v   68 (90)
                      ..|++|||.+..+..++.++++    .....+|. .+.|..  ..+.+.+.++|..+...               +.  +
T Consensus       264 ~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~  343 (383)
T 2x0b_A          264 CLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAI  343 (383)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHHHHHTCEECSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSE
T ss_pred             cEEEEcCCCceEEcCHHHHHHHHHHhCCcccCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEE
Confidence            5799999999999999999888    11114443 234432  23567777777655321               11  1


Q ss_pred             cCC-----CCceEEeCcchhhhcC
Q 045784           69 LPF-----EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        69 ~~~-----~~~dvILG~~wL~~~~   87 (90)
                      .+.     .+...|||..||+++.
T Consensus       344 ~~~~~~~~~~~~~ILGd~Fl~~~y  367 (383)
T 2x0b_A          344 HAMDIPPPTGPTWALGATFIRKFY  367 (383)
T ss_dssp             EECCCCTTTCSCEEECHHHHTTEE
T ss_pred             EecccCCCCCCcEEEChHHhcceE
Confidence            111     2346899999999864

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=91.85  E-value=2  Score=29.10  Aligned_cols=26  Identities=23%  Similarity=0.072  Sum_probs=21.6

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++||||+..++..
T Consensus        17 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~   44 (323)
T 3cms_A           17 FGKIYLGTPPQEFTVLFDTGSSDFWVPS   44 (323)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred             EEEEEECCCCeEEEEEEeCCccceEEcC
Confidence            4567777  6999999999999998853

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=91.70  E-value=0.53  Score=32.87  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             EEEEEEcCCCCcccccHHhhhee----eEE-ecCCC-eeeeec--eeeeeEEEEeceeEEee---------------EEE
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL----NVM-VASGE-RFSSLG--TCLQTLIKLQGVPLIVD---------------FYL   68 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l----~v~-~a~G~-~~~~~~--~~~~~~i~i~~~~~~~~---------------~~v   68 (90)
                      ...|++|||.+..+..++.++++    ... -.+|. .+.|..  ..+.+.+.+++..+...               |.-
T Consensus       253 ~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~~~~~~  332 (370)
T 3psg_A          253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEG  332 (370)
T ss_dssp             CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEESEEE
T ss_pred             CceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCcEEEECCCcccCCcEEEEECCEEEEECHHHhcccCCCEEEEEEEe
Confidence            35799999999999999999888    211 12232 233322  23556777777655432               111


Q ss_pred             cCC---CCceEEeCcchhhhcC
Q 045784           69 LPF---EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        69 ~~~---~~~dvILG~~wL~~~~   87 (90)
                      .+.   .+.-.|||..||+.+-
T Consensus       333 ~~~~~~~~~~~ILG~~Fl~~~y  354 (370)
T 3psg_A          333 MDVPTSSGELWILGDVFIRQYY  354 (370)
T ss_dssp             ECCCTTSCCEEEECHHHHTTEE
T ss_pred             CCCCCCCCCcEEeChHHhcceE
Confidence            111   1224899999999864

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=91.65  E-value=1.8  Score=29.51  Aligned_cols=27  Identities=11%  Similarity=0.049  Sum_probs=22.7

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|.  .++..+++||||+..++..
T Consensus        17 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~   45 (329)
T 3c9x_A           17 YITSVSIGTPAQVLPLDFDTGSSDLWVFS   45 (329)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred             EEEEEEECCCCeEEEEEEcCCCCCeEEec
Confidence            35677788  8999999999999998854

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=91.65  E-value=1.4  Score=29.90  Aligned_cols=26  Identities=15%  Similarity=0.115  Sum_probs=21.8

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++||||+..++..
T Consensus        16 ~~~i~iGtP~q~~~v~~DTGSs~lWv~~   43 (329)
T 1dpj_A           16 YTDITLGTPPQNFKVILDTGSSNLWVPS   43 (329)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred             EEEEEECCCCcEEEEEEeCCCcCeEEec
Confidence            4667777  7999999999999998853

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=91.29  E-value=1.5  Score=30.20  Aligned_cols=26  Identities=12%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|.  .++..+++||||+..++..
T Consensus        21 ~~~i~iGtP~q~~~v~~DTGSs~~Wv~~   48 (361)
T 1mpp_A           21 AIPVSIGTPGQDFYLLFDTGSSDTWVPH   48 (361)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCeEECC
Confidence            4677787  8999999999999998854

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=91.14  E-value=2.1  Score=29.36  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=46.4

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHH------hhhe--e---------------eEEecCCCeeeeeceeeeeEEEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQE------LAVK--L---------------NVMVASGERFSSLGTCLQTLIKL   57 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~------~a~~--l---------------~v~~a~G~~~~~~~~~~~~~i~i   57 (90)
                      .++..|.  .++..+++||||+..++...      |...  +               .+..++|.   ..|....=.+.+
T Consensus        26 ~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs---~~G~~~~D~v~i  102 (351)
T 1tzs_A           26 FGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS---LSGIIGADQVSV  102 (351)
T ss_dssp             CEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE---EEEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC---eEEEEEEeEEEE
Confidence            3566776  69999999999999998542      2111  0               34445553   234443335677


Q ss_pred             eceeEE-eeEEEcCC--------CCceEEeCcch
Q 045784           58 QGVPLI-VDFYLLPF--------EGYDVVLDTQW   82 (90)
Q Consensus        58 ~~~~~~-~~~~v~~~--------~~~dvILG~~w   82 (90)
                      ++.... ..|-+...        ..+|-|||+.+
T Consensus       103 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  136 (351)
T 1tzs_A          103 EGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY  136 (351)
T ss_dssp             TTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             CCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence            776544 34544332        24689999875

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=91.12  E-value=0.36  Score=27.67  Aligned_cols=28  Identities=14%  Similarity=0.038  Sum_probs=22.8

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQE   29 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~   29 (90)
                      ..++..|.  .++..+++||||+..++...
T Consensus        15 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~   44 (97)
T 1lya_A           15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSI   44 (97)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred             EEEEEEECCCCeEEEEEEeCCCCceEEeEc
Confidence            34667787  79999999999999987643

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=91.12  E-value=0.45  Score=32.49  Aligned_cols=77  Identities=9%  Similarity=-0.009  Sum_probs=45.8

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--eE---Ee--cCCC-eeeeeceeeeeEEEEeceeEEee---------------EE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--NV---MV--ASGE-RFSSLGTCLQTLIKLQGVPLIVD---------------FY   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~v---~~--a~G~-~~~~~~~~~~~~i~i~~~~~~~~---------------~~   67 (90)
                      .+..+++|||.+..++.++.++++  .+   ..  .+|. .+.|....+.+.+.+++..+..+               +.
T Consensus       212 ~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~  291 (329)
T 3c9x_A          212 NSIDGIADTGTTLLLLDDNVVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCF  291 (329)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTCTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEE
T ss_pred             CCceEEEECCCCcEeCCHHHHHHHHHhCCCcEEcCCCCEEEEECCCCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEE
Confidence            356899999999999999998877  21   11  1121 13333334556666666443211               11


Q ss_pred             --EcCCC-CceEEeCcchhhhcC
Q 045784           68 --LLPFE-GYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 --v~~~~-~~dvILG~~wL~~~~   87 (90)
                        +.+.. ....|||..||+.+.
T Consensus       292 ~~i~~~~~~~~~ILG~~fl~~~y  314 (329)
T 3c9x_A          292 GGLQSSSGIGINIFGDVALKAAL  314 (329)
T ss_dssp             ESEEECTTTTSEEECHHHHTTEE
T ss_pred             EEEEcCCCCCcEEEChHHhccEE
Confidence              12222 245899999998764

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=90.97  E-value=0.34  Score=33.12  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=23.2

Q ss_pred             EECCEE----EEEEEcCCCCcccccHHhhhee
Q 045784            7 RLVHKV----VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         7 ~i~~~~----~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .++++.    ..+++|||++..++.++.++++
T Consensus       203 ~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l  234 (334)
T 1j71_A          203 NFDGTSVSTNADVVLDSGTTITYFSQSTADKF  234 (334)
T ss_dssp             EETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred             EECCEeccCCccEEEeCCCCcEecCHHHHHHH
Confidence            456644    4689999999999999999888

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=90.95  E-value=1.2  Score=29.98  Aligned_cols=77  Identities=12%  Similarity=0.034  Sum_probs=46.5

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccHHhhh------ee-----------------eEEecCCCeeeeeceeeeeEEEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQELAV------KL-----------------NVMVASGERFSSLGTCLQTLIKL   57 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~~~a~------~l-----------------~v~~a~G~~~~~~~~~~~~~i~i   57 (90)
                      .++..|.  .++..+++||||+..++..+-..      .-                 .+..++|.   ..|....=.+.+
T Consensus        14 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs---~~G~~~~D~v~i   90 (320)
T 4aa9_A           14 FGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS---MEGFLGYDTVTV   90 (320)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE---EEEEEEEEEEEE
T ss_pred             EEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE---EEEEEEEEEEEE
Confidence            4667777  69999999999999998642111      11                 33445554   234443335677


Q ss_pred             eceeEE-eeEEEcCC--------CCceEEeCcch
Q 045784           58 QGVPLI-VDFYLLPF--------EGYDVVLDTQW   82 (90)
Q Consensus        58 ~~~~~~-~~~~v~~~--------~~~dvILG~~w   82 (90)
                      ++.... ..|-+...        ..+|-|||+.+
T Consensus        91 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  124 (320)
T 4aa9_A           91 SNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY  124 (320)
T ss_dssp             TTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred             CCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence            776554 34443321        23689999875

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=90.65  E-value=1.1  Score=30.43  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             EECCEE----EEEEEcCCCCcccccHHhhhee
Q 045784            7 RLVHKV----VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         7 ~i~~~~----~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .++++.    ..+++|||.+..++.++.++++
T Consensus       205 ~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i  236 (339)
T 3fv3_A          205 NLKGSSFSFGDGALLDSGTTLTYFPSDFAAQL  236 (339)
T ss_dssp             EESSCEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred             EECCEeecCCccEEEeCCCCCEecCHHHHHHH
Confidence            355544    4599999999999999999988

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=90.50  E-value=2.8  Score=28.42  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHH------hhhe--e---------------eEEecCCCeeeeeceeeeeEEE
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQE------LAVK--L---------------NVMVASGERFSSLGTCLQTLIK   56 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~------~a~~--l---------------~v~~a~G~~~~~~~~~~~~~i~   56 (90)
                      ..++..|.  .++..+++||||+..++...      |...  .               .+...+|..   .|....=.+.
T Consensus        14 Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~---~G~~~~D~v~   90 (329)
T 1htr_B           14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSL---TGFFGYDTLT   90 (329)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEE---EEEEEEEEEE
T ss_pred             EEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCCe---EEEEEeeeEE
Confidence            35667777  69999999999999988542      2111  1               233444431   3443333566


Q ss_pred             EeceeEE-eeEEEcCC--------CCceEEeCcch
Q 045784           57 LQGVPLI-VDFYLLPF--------EGYDVVLDTQW   82 (90)
Q Consensus        57 i~~~~~~-~~~~v~~~--------~~~dvILG~~w   82 (90)
                      +++.... ..|-+...        ..+|-|||+.+
T Consensus        91 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (329)
T 1htr_B           91 VQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY  125 (329)
T ss_dssp             ETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred             EcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence            7776554 34554432        24689999865

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=89.81  E-value=1.9  Score=30.82  Aligned_cols=27  Identities=15%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|.  .++..+++||||+..++..
T Consensus        76 Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~  104 (455)
T 3lpj_A           76 YYVEMTVGSPPQTLNILVDTGSSNFAVGA  104 (455)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred             EEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence            34667777  6999999999999998854

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=89.65  E-value=3.4  Score=27.97  Aligned_cols=26  Identities=12%  Similarity=0.148  Sum_probs=22.1

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCccccc
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVR   27 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~   27 (90)
                      ..++..|.  .++..+++||||+..++.
T Consensus        14 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~   41 (342)
T 3pvk_A           14 YAADITVGSNNQKLNVIVDTGSSDLWVP   41 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred             EEEEEEEcCCCcEEEEEEECCCcceEEE
Confidence            35677787  799999999999999984

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=89.54  E-value=3.8  Score=28.29  Aligned_cols=27  Identities=11%  Similarity=0.066  Sum_probs=22.4

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|.  .++..+++||||+..++..
T Consensus        15 Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~   43 (383)
T 2ewy_A           15 YYLEMLIGTPPQKLQILVDTGSSNFAVAG   43 (383)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred             EEEEEEecCCCceEEEEEecCCCceEEec
Confidence            35677787  7999999999999998854

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=88.56  E-value=2.9  Score=29.15  Aligned_cols=27  Identities=15%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|.  .++..+++||||+..++..
T Consensus        30 Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~   58 (402)
T 3vf3_A           30 YYVEMTVGSPPQTLNILVDTGSSNFAVGA   58 (402)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred             EEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence            34567777  7999999999999998853

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=81.95  E-value=1.6  Score=29.62  Aligned_cols=27  Identities=7%  Similarity=-0.028  Sum_probs=22.8

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|..++..+++||||+..++..
T Consensus        16 Y~~~i~iG~Q~~~v~~DTGSs~lWv~~   42 (325)
T 1ibq_A           16 YLTPVTVGKSTLHLDFDTGSADLWVFS   42 (325)
T ss_dssp             EEEEEEEBTEEEEEEEETTCCCEEEEC
T ss_pred             EEEEEEECCEEEEEEEeCCCccceEee
Confidence            356777889999999999999998864

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=81.73  E-value=1.1  Score=29.35  Aligned_cols=29  Identities=10%  Similarity=0.007  Sum_probs=23.1

Q ss_pred             EEECCEE-------EEEEEcCCCCcccccHHhhhee
Q 045784            6 GRLVHKV-------VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus         6 ~~i~~~~-------~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..+++++       ..++||||.+..++.++.++++
T Consensus       197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i  232 (239)
T 1b5f_A          197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI  232 (239)
T ss_dssp             EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred             EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence            3466654       4799999999999999988764

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=81.40  E-value=2.1  Score=27.89  Aligned_cols=26  Identities=15%  Similarity=0.005  Sum_probs=21.9

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCccccc
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVR   27 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~   27 (90)
                      ..++..|.  .++..+++||||+..++.
T Consensus        15 Y~~~i~iGtP~q~~~v~~DTGSs~lWv~   42 (239)
T 1b5f_A           15 YFGEIGIGTPPQKFTVIFDTGSSVLWVP   42 (239)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred             EEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence            34667787  799999999999999885

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=81.21  E-value=2.1  Score=29.07  Aligned_cols=27  Identities=7%  Similarity=-0.022  Sum_probs=22.8

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|+  .++..+++||||+..++..
T Consensus        17 Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~   45 (325)
T 2apr_A           17 YYGQVTIGTPGKKFNLDFDTGSSDLWIAS   45 (325)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred             EEEEEEECCCCeEEEEEEcCCCCCEEEcc
Confidence            35677888  8999999999999998864

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=80.64  E-value=1.9  Score=29.36  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=22.2

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|+.++..+++||||+..++..
T Consensus        20 ~~~i~iG~Q~~~v~~DTGSs~lWv~~   45 (330)
T 1yg9_A           20 AGITKIGNQNFLTVFDSTSCNVVVAS   45 (330)
T ss_dssp             EEEEEETTEEEEEEEETTCCCEEEEC
T ss_pred             EEEEEECCEEEEEEEeCCCcceEEec
Confidence            46778889999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d2fmba_	104	EIAV protease {Equine infectious anemia virus [Tax	99.25
d4fiva_	113	Feline immunodeficiency virus (FIV) protease {Feli	98.9
d1nsoa_	107	Mason-Pfizer monkey virus protease {Simian retrovi	98.59
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	98.23
d2nmza1	99	Human immunodeficiency virus type 1 protease {Huma	98.21
d3ecga1	99	Human immunodeficiency virus type 2 (HIV-2) protea	98.11
d2pmaa1	141	Uncharacterized protein LPG0085 {Legionella pneumo	97.95
d2rspa_	124	Rous sarcoma virus protease {Rous sarcoma virus, s	97.37
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	96.84
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	96.0
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	95.86
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	95.78
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	95.71
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	95.46
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	94.91
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	94.54
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	94.47
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	94.31
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	93.81
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	93.44
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	93.35
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	93.18
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	92.99
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	92.99
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	92.98
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	92.74
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	92.66
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	92.24
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	90.72
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	88.1
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	87.88
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	87.04
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	86.36
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	84.43

>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: EIAV protease
species: Equine infectious anemia virus [TaxId: 11665]

Probab=99.25  E-value=2.9e-11  Score=71.32  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee-------eEE--ecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL-------NVM--VASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEG   73 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l-------~v~--~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~   73 (90)
                      .+..+|+|+++.+|+||||.++.|+++-..+.       ...  .+.|.....  ....+.+++.++.....++|.|.. 
T Consensus        10 ~~~i~I~Gq~v~~LLDTGAD~TVI~~~~~p~~~~~~~~~~~~~igg~g~~~~~--~~~~v~i~~~g~~~~~~~lV~p~P-   86 (104)
T d2fmba_          10 TTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVET--FSTPVTIKKKGRHIKTRMLVADIP-   86 (104)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEETTEEECC--EEEEEEEEETTEEEEEEEEEESCS-
T ss_pred             EEEEEECCEEEEEEEeCCCCeEEEcccccCccCCCCCCcceeEEEEecceEEE--EEEEEEEEECCeEEEEEEEECCCC-
Confidence            47889999999999999999999998766532       111  122222222  233477888899888899999842 


Q ss_pred             ceEEeCcchhhhcC
Q 045784           74 YDVVLDTQWLSTFG   87 (90)
Q Consensus        74 ~dvILG~~wL~~~~   87 (90)
                      .+ |+|.|.|++.+
T Consensus        87 vn-LlGRdlL~qlG   99 (104)
T d2fmba_          87 VT-ILGRDILQDLG   99 (104)
T ss_dssp             SC-EECHHHHHHHT
T ss_pred             cc-eecHHHHHHhC
Confidence            22 99999999976

>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Feline immunodeficiency virus (FIV) protease
species: Feline immunodeficiency virus [TaxId: 11673]

Probab=98.90  E-value=5.8e-09  Score=62.04  Aligned_cols=84  Identities=8%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHHhhhee--------eEEecCCCeeeeeceeeeeEEEEeceeEE-----eeEEEc
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQELAVKL--------NVMVASGERFSSLGTCLQTLIKLQGVPLI-----VDFYLL   69 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l--------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~-----~~~~v~   69 (90)
                      .++.+|||+++.+|+||||.++.|++.-....        .+. .=|+..... ...++.+++.++...     ..+-|+
T Consensus        12 ~v~v~I~Gq~v~~LLDTGAD~TVi~~~d~p~~~~~~~~~~~~~-GIGG~~~v~-~~~~v~i~~~~~~~~gtvl~g~~pvl   89 (113)
T d4fiva_          12 EILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMI-GVGGGKRGT-NYINVHLEIRDENYKTQCIFGNVCVL   89 (113)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEEGGGCCCTTCEEEEEEEEE-CSSCEEEEE-EEEEEEEEECCTTSCCCEEEEEEEEE
T ss_pred             eEEEEECCEEEEEEEcCCCCcEEEeccccCCCCCCCCCCCeEE-ecCeEEeee-EEceEEEEEcCCeEeEEEEEcccccc
Confidence            47889999999999999999999998755433        222 224444333 344677877765543     344555


Q ss_pred             CCCCce-EEeCcchhhhcCC
Q 045784           70 PFEGYD-VVLDTQWLSTFGL   88 (90)
Q Consensus        70 ~~~~~d-vILG~~wL~~~~p   88 (90)
                      |....+ =|+|.|.|++.+-
T Consensus        90 p~~~~p~nllGRd~LtqlG~  109 (113)
T d4fiva_          90 EDNSLIQPLLGRDNMIKFNI  109 (113)
T ss_dssp             TTCCCSSCEECHHHHHHTTC
T ss_pred             CCCCCcCCEEChhhhHHhCC
Confidence            544432 4899999999763

>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Mason-Pfizer monkey virus protease
species: Simian retrovirus 1, SRV-1 [TaxId: 11942]

Probab=98.59  E-value=6.5e-08  Score=56.84  Aligned_cols=82  Identities=13%  Similarity=0.060  Sum_probs=48.5

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccHHhhhee------eEEecC-CCeeeeeceeeeeEEEEece-e-EEeeEEEcCCCCc
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQELAVKL------NVMVAS-GERFSSLGTCLQTLIKLQGV-P-LIVDFYLLPFEGY   74 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~~~a~~l------~v~~a~-G~~~~~~~~~~~~~i~i~~~-~-~~~~~~v~~~~~~   74 (90)
                      +..+|+|+++.+|+||||.++.|++.-....      ...+.. |+...... ...+.....++ . -....++++-...
T Consensus        12 ~~v~I~G~~v~~LLDTGAD~TVI~~~~~p~~wp~~~~~~~~~GiGg~~~~~~-~~~~l~~~~~~~~~~~~~p~vv~~~Pv   90 (107)
T d1nsoa_          12 LTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQ-SSKYLTWRDKENNSGLIKPFVIPNLPV   90 (107)
T ss_dssp             EEEEETTEEEEECCCSSCSSCBCCGGGSCTTSCCCCCEEEECSSSEEEECCC-BCCCEEEEETTTEEEEECCBBCTTCCC
T ss_pred             EEEEECCEEEEeeecCCCCcEEEeccccCCCCCcCcCccEEEEecCeeeEEE-eeeeEEEEeCCCceEEEcceECCCCCc
Confidence            5789999999999999999999988754433      122222 33333222 22222333222 2 2222234544444


Q ss_pred             eEEeCcchhhhcC
Q 045784           75 DVVLDTQWLSTFG   87 (90)
Q Consensus        75 dvILG~~wL~~~~   87 (90)
                      + |+|.|.|.+.+
T Consensus        91 n-llGRd~L~qlg  102 (107)
T d1nsoa_          91 N-LWGRDLLSQMK  102 (107)
T ss_dssp             C-BCCHHHHHHHH
T ss_pred             C-cccHHHHHHhC
Confidence            4 89999999875

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.23  E-value=5.5e-06  Score=52.76  Aligned_cols=82  Identities=18%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHH-hhhee--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQE-LAVKL--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~-~a~~l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+|+|++..||+||||.++.+.+- +-.+-  ++.-.=|+-+... ...++++++.++.....++|.|  ..-=|||
T Consensus        10 ~VtVkIgGQ~~eaLLDTGADDTVLe~inLpG~WkPkiIGGIGGfIkVr-qY~~V~IeI~gkk~~gTVLVgP--TPvNIIG   86 (203)
T d1hvca_          10 LVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVR-QYDQILIEICGHKAIGTVLVGP--TPVNIIG   86 (203)
T ss_dssp             EEEEESSSCEEEEEECTTCSSEEEECCCCSSCEEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEEES--CSSCEEC
T ss_pred             eEEEEECCEEEEEEecCCCCceEEecccCCCCCcccEEEecCceEEEE-EeCCEEEEECCcEEEEEEEECC--CCccccc
Confidence            467899999999999999999999541 11111  2222224433332 3467889999999999999998  3344679


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .|.|.+.+
T Consensus        87 RNlLtqlG   94 (203)
T d1hvca_          87 RNLLTQIG   94 (203)
T ss_dssp             HHHHGGGT
T ss_pred             hhhhhhhh
Confidence            99998875

>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.21  E-value=1.7e-05  Score=45.26  Aligned_cols=82  Identities=15%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccHH-hhhee--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQE-LAVKL--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~~-~a~~l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..+|+|+...||+||||..+.+.+- +-.+-  ++.-.-|+-+... ...++++++.++......+|-|. ..+ |+|
T Consensus        10 ~vtvkIgGq~~eaLLDTGADdTVleei~lpg~WkPk~IgGIGGfikVr-qYd~i~iei~g~k~~gtVLVgpT-PvN-IiG   86 (99)
T d2nmza1          10 LVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVR-QYDQIIIEIAGHKAIGTVLVGPT-PAN-IIG   86 (99)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEESCCCCSCCEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEEESC-SSC-EEC
T ss_pred             eEEEEECCEEEEEeeccCCCceEEecccCCCCCCceEEEeccceEEEE-EeCceEEEECCcEEEEEEEECCC-Ccc-EEc
Confidence            367899999999999999999999641 11111  2222224444332 35678999999999999999883 333 569


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .+.|.+.+
T Consensus        87 RN~Ltq~G   94 (99)
T d2nmza1          87 RNLLTQIG   94 (99)
T ss_dssp             HHHHTTTT
T ss_pred             ccchhhcC
Confidence            99998865

>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 2 (HIV-2) protease
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.11  E-value=3.6e-05  Score=43.89  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             EEEEECCEEEEEEEcCCCCcccccH-Hhhhee--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeCc
Q 045784            4 VIGRLVHKVVTVLIDSRRTHNFVRQ-ELAVKL--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLDT   80 (90)
Q Consensus         4 v~~~i~~~~~~aLiDsGA~~~~i~~-~~a~~l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG~   80 (90)
                      +..+|+|+...||+||||..+.+.. ++-.+-  +..-.=|.-+... ...++++++-++......+|-|..  ==|+|.
T Consensus        11 vtvkIgGq~~eaLLDTGADdTVle~i~lpg~WkPk~iGGIGGfikVr-qYd~i~Ieicg~k~~gtVLvgpTP--vNIiGR   87 (99)
T d3ecga1          11 VTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTK-EYKNVEIEVLNKKVRATIMTGDTP--INIFGR   87 (99)
T ss_dssp             EEEEETTEEEEEEECTTCSSCEECSCCCCSCCEEEEEEETTEEEEEE-EEEEEEEEETTEEEEEEEEEECCS--SCEECH
T ss_pred             EEEEECCEEeeeecccCCCceeeeccCCCCCCcceEEEEeeeeEEEE-EeCcEEEEECCcEEEEEEEeCCCC--ceEEcc
Confidence            6789999999999999999999853 121221  2222224434332 356789999999998888886632  236799


Q ss_pred             chhhhcC
Q 045784           81 QWLSTFG   87 (90)
Q Consensus        81 ~wL~~~~   87 (90)
                      +.|.+.+
T Consensus        88 NlLtqlG   94 (99)
T d3ecga1          88 NILTALG   94 (99)
T ss_dssp             HHHHHTT
T ss_pred             chhhhhC
Confidence            9998875

>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085 {Legionella pneumophila [TaxId: 446]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: LPG0085-like
domain: Uncharacterized protein LPG0085
species: Legionella pneumophila [TaxId: 446]

Probab=97.95  E-value=1.9e-05  Score=48.01  Aligned_cols=78  Identities=14%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee--------eEEe---------------------cCCCee-------eeeceeeee
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL--------NVMV---------------------ASGERF-------SSLGTCLQT   53 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l--------~v~~---------------------a~G~~~-------~~~~~~~~~   53 (90)
                      |.++.|=|||||..|-|+..=.+..        ...+                     .++...       .-...+-..
T Consensus        14 ~~~i~AKiDTGA~tSslhA~~I~~fe~dg~~~V~F~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~e~RpvV~~   93 (141)
T d2pmaa1          14 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLL   93 (141)
T ss_dssp             TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEEEE
T ss_pred             CceEEEEEcCCCCcceeceeEEEEEccCCceEEEEEeccccCCeEEEEEEEeEEEEEEEeeeecCcccccccceeeEEEE
Confidence            5679999999999999987555433        0011                     111100       001223346


Q ss_pred             EEEEeceeEEeeEEEcCCC--CceEEeCcchhhhcC
Q 045784           54 LIKLQGVPLIVDFYLLPFE--GYDVVLDTQWLSTFG   87 (90)
Q Consensus        54 ~i~i~~~~~~~~~~v~~~~--~~dvILG~~wL~~~~   87 (90)
                      ++.++++.+..+|.+.+=.  .|+++||.+||++.+
T Consensus        94 ~i~ig~~~~~ie~tL~dR~~m~yp~LiGR~~L~~~~  129 (141)
T d2pmaa1          94 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFN  129 (141)
T ss_dssp             EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTT
T ss_pred             EEEECCEEEEEEEEECCCCCCCCCEEECHHHHhcCC
Confidence            7889999999999999854  599999999998753

>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma virus, strain pr-C [TaxId: 11886]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Rous sarcoma virus protease
species: Rous sarcoma virus, strain pr-C [TaxId: 11886]

Probab=97.37  E-value=8.6e-05  Score=44.18  Aligned_cols=28  Identities=18%  Similarity=0.107  Sum_probs=23.1

Q ss_pred             EEECCEEEEEEEcCCCCcccccHHhhhe
Q 045784            6 GRLVHKVVTVLIDSRRTHNFVRQELAVK   33 (90)
Q Consensus         6 ~~i~~~~~~aLiDsGA~~~~i~~~~a~~   33 (90)
                      .+++|+.+.+|+||||..+.|++.-...
T Consensus        25 ~k~~g~~i~~LLDTGAD~TVI~~~dwp~   52 (124)
T d2rspa_          25 VKQRSVYITALLDSGADITIISEEDWPT   52 (124)
T ss_dssp             CSCSEEEEEEEECTTCSSCEEETTTSCT
T ss_pred             EeeCCEEEEEEEcCCCCeEEEcCCccCC
Confidence            3456788999999999999999876544

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=96.84  E-value=0.0068  Score=38.17  Aligned_cols=82  Identities=16%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             EEEEEECCEEEEEEEcCCCCcccccH-Hhhhee--eEEecCCCeeeeeceeeeeEEEEeceeEEeeEEEcCCCCceEEeC
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVRQ-ELAVKL--NVMVASGERFSSLGTCLQTLIKLQGVPLIVDFYLLPFEGYDVVLD   79 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~~-~~a~~l--~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~~~~v~~~~~~dvILG   79 (90)
                      .+..++.|+...||+||||..+.+.+ ++-.+-  ++.-.-|.-+.. ....++++++-++......+|-|.. . =|+|
T Consensus       114 ~vt~ki~gq~~ealldtgaddtv~e~~~lpgrwkpk~iggiggfikv-rqy~~v~iei~g~k~~gtvlvgptp-~-niig  190 (203)
T d1hvca_         114 LVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKV-RQYDQILIEICGHKAIGTVLVGPTP-V-NIIG  190 (203)
T ss_dssp             EEEEEETTEEEEEEECTTCSSCEEESCCCSSCCEEEEEEETTEEEEE-EEEEEEEEEETTEEEEEEEEEECCS-S-CEEC
T ss_pred             eEEEecchhHHHHHhcccCCceEEecccCCCCCcceEEEEeccccce-eeEccEEEEECCCEEEEEEEECCCC-c-eEEc
Confidence            36789999999999999999998843 111111  222222443333 2456789999999998888888732 3 3569


Q ss_pred             cchhhhcC
Q 045784           80 TQWLSTFG   87 (90)
Q Consensus        80 ~~wL~~~~   87 (90)
                      .+.|.+.+
T Consensus       191 rn~ltq~g  198 (203)
T d1hvca_         191 RNLLTQIG  198 (203)
T ss_dssp             HHHHTTTT
T ss_pred             ccchhhcC
Confidence            98888764

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=96.00  E-value=0.0033  Score=40.90  Aligned_cols=25  Identities=12%  Similarity=0.141  Sum_probs=21.6

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .....+++|||.+..++.++..+++
T Consensus       206 ~~~~~~ivDSGts~~~lp~~~~~~~  230 (323)
T d1izea_         206 SDSITGIADTGTTLLLLDDSIVDAY  230 (323)
T ss_dssp             CCCEEEEECTTCCSEEECHHHHHHH
T ss_pred             ccCceEEeccCCccccCCHHHHHHH
Confidence            3356789999999999999998887

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=95.86  E-value=0.006  Score=40.05  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=46.0

Q ss_pred             EEEEEEcCCCCcccccHHhhhee----eEEecC--CC-eeeee--ceeeeeEEEEeceeEEee--EEE------------
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL----NVMVAS--GE-RFSSL--GTCLQTLIKLQGVPLIVD--FYL------------   68 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l----~v~~a~--G~-~~~~~--~~~~~~~i~i~~~~~~~~--~~v------------   68 (90)
                      ...|+||||++..++.++..+++    .....+  |. ...|.  ...+++.+.+++..+...  ..+            
T Consensus       206 ~~~aiiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~c~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~~~  285 (340)
T d1wkra_         206 STAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGS  285 (340)
T ss_dssp             EEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGGGGTCC
T ss_pred             CcceEEecCCccEeccHHHHHHHHHHhCccccCCceEEEEeccccCCCCceEEEECCEEEEEChHHeEeeccCceeecCc
Confidence            45689999999999999999888    222222  21 12221  123457777777655432  111            


Q ss_pred             ----------cC---CCCceEEeCcchhhhcC
Q 045784           69 ----------LP---FEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        69 ----------~~---~~~~dvILG~~wL~~~~   87 (90)
                                ..   ..+...|||..||+.+-
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~y  317 (340)
T d1wkra_         286 ASSVYLIVGDLGSDSGEGLDFINGLTFLERFY  317 (340)
T ss_dssp             SSCEEBCEEECSSCTTSSCCEEECHHHHTSEE
T ss_pred             cceEEEEEecccCCCCCCCCEEechHHhCCEE
Confidence                      11   11245799999998763

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

Probab=95.78  E-value=0.0055  Score=40.30  Aligned_cols=77  Identities=10%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--e----EEecC-CC-eeeeeceeeeeEEEEeceeEEee---------------EE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--N----VMVAS-GE-RFSSLGTCLQTLIKLQGVPLIVD---------------FY   67 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~----v~~a~-G~-~~~~~~~~~~~~i~i~~~~~~~~---------------~~   67 (90)
                      ....++||||++..++..+.++++  .    ....+ |. ...|....+.+.+.+++..+..+               +.
T Consensus       212 ~~~~~iiDSGts~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~C~~~~P~i~f~f~g~~~~lp~~~~~~~~~~~~~~~C~  291 (330)
T d1oewa_         212 TSIDGIADTGTTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCF  291 (330)
T ss_dssp             EEEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEE
T ss_pred             CCcceeeccccccccCCHHHHHHHHHHccCcccCcccceEEecccCCCCcEEEEECCEEEecCHHHeeEEEecCCCCEEE
Confidence            345789999999999999999888  1    11111 21 23333334556677776544321               11


Q ss_pred             --EcCCCCce-EEeCcchhhhcC
Q 045784           68 --LLPFEGYD-VVLDTQWLSTFG   87 (90)
Q Consensus        68 --v~~~~~~d-vILG~~wL~~~~   87 (90)
                        +.+..+.+ .|||.+||+.+-
T Consensus       292 ~~i~~~~~~~~~ILG~~flr~~y  314 (330)
T d1oewa_         292 GGIQSSAGIGINIFGDVALKAAF  314 (330)
T ss_dssp             ESEEESTTTSSEEECHHHHTTEE
T ss_pred             EEEECCCCCCCEEECHHHhCCEE
Confidence              11222223 689999999764

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=95.71  E-value=0.0041  Score=40.85  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ....++||||++..++.++..+++
T Consensus       211 ~~~~~iiDSGts~~~lp~~~~~~l  234 (342)
T d1eaga_         211 DNVDVLLDSGTTITYLQQDLADQI  234 (342)
T ss_dssp             EEEEEEECTTCSSEEECHHHHHHH
T ss_pred             cccccccccCCccccCCHHHHHHH
Confidence            344689999999999999999998

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=95.46  E-value=0.017  Score=37.30  Aligned_cols=78  Identities=8%  Similarity=0.070  Sum_probs=45.9

Q ss_pred             CEEEEEEEcCCCCcccccHHhhhee----eEEecCCCeeeee---ceeeeeEEEEeceeEEee---------------EE
Q 045784           10 HKVVTVLIDSRRTHNFVRQELAVKL----NVMVASGERFSSL---GTCLQTLIKLQGVPLIVD---------------FY   67 (90)
Q Consensus        10 ~~~~~aLiDsGA~~~~i~~~~a~~l----~v~~a~G~~~~~~---~~~~~~~i~i~~~~~~~~---------------~~   67 (90)
                      .....++||||++..++.++..+++    .....++......   ...+.+.+.+++..+..+               +.
T Consensus       206 ~~~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~c~~~i~  285 (324)
T d1am5a_         206 CEGCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGDQAFCTSGLG  285 (324)
T ss_dssp             CCCEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEESSSCEEECEE
T ss_pred             cCCcceeeccCcccccCCHHHHHHHHHHhCCcccCCcccccccccccCCceEEEECCEEEEECHHHhEecCCCeEEEEEE
Confidence            4556799999999999999998887    2222222211111   123456666666544221               12


Q ss_pred             EcCC---CCceEEeCcchhhhcC
Q 045784           68 LLPF---EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        68 v~~~---~~~dvILG~~wL~~~~   87 (90)
                      -.+.   ...-.|||.+||+.+.
T Consensus       286 ~~~~~~~~~~~~ILG~~fl~~~y  308 (324)
T d1am5a_         286 SSGVPSNTSELWIFGDVFLRNYY  308 (324)
T ss_dssp             ECCSCCSSSCEEEECHHHHHHEE
T ss_pred             ecCcCCCCCCCEEECHHhhcCEE
Confidence            2221   1233699999999864

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=94.91  E-value=0.08  Score=34.74  Aligned_cols=77  Identities=13%  Similarity=0.128  Sum_probs=45.0

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee----e-EEecC-CCeeeee--ceeeeeEEEEeceeEEe------------------
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL----N-VMVAS-GERFSSL--GTCLQTLIKLQGVPLIV------------------   64 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l----~-v~~a~-G~~~~~~--~~~~~~~i~i~~~~~~~------------------   64 (90)
                      ....+++|||++..++.++.++++    . ..... +....+.  ...+.+.+.++|..+..                  
T Consensus       253 ~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~~~~~~~~~~~C~  332 (373)
T d1miqa_         253 EKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCM  332 (373)
T ss_dssp             EEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSEEESSSSSCSEEE
T ss_pred             CCcceEeccCCceeccCHHHHHHHHHHhCCeeccCCCeeEeccccCCCceEEEEECCEEEEECHHHeeEEEEeCCCCEEE
Confidence            456699999999999999999988    1 11111 1111111  12244556666544322                  


Q ss_pred             -eEEEcCCCCceEEeCcchhhhcC
Q 045784           65 -DFYLLPFEGYDVVLDTQWLSTFG   87 (90)
Q Consensus        65 -~~~v~~~~~~dvILG~~wL~~~~   87 (90)
                       .|...+..+...|||..||+.+-
T Consensus       333 ~~~~~~~~~~~~~ILG~~fl~~~y  356 (373)
T d1miqa_         333 ITMLPVDIDSNTFILGDPFMRKYF  356 (373)
T ss_dssp             ESEEECCSSSSEEEECHHHHHHEE
T ss_pred             EEEEECCCCCCCEEEcHHhhCcEE
Confidence             11122333344799999999864

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=94.54  E-value=0.042  Score=35.28  Aligned_cols=77  Identities=9%  Similarity=0.048  Sum_probs=45.0

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee--e----EEecCCCe--eeeeceeeeeEEEEeceeEEe----------------eE
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL--N----VMVASGER--FSSLGTCLQTLIKLQGVPLIV----------------DF   66 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l--~----v~~a~G~~--~~~~~~~~~~~i~i~~~~~~~----------------~~   66 (90)
                      ....+++|||.+..++.++.++++  .    ..-.+...  ..+....+.+.+.++|..+..                -+
T Consensus       206 ~~~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~c~~~~p~itf~f~g~~~~i~~~~~~~~~~~~~~~C~~  285 (323)
T d1bxoa_         206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLG  285 (323)
T ss_dssp             EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSCEEE
T ss_pred             CCcceEEecccccccCCHHHHHHHHHHhCCccccCCCCcEEEeccCCCCcEEEEECCEEEEEChHHeEEEEcCCCCEEEE
Confidence            456799999999999999999998  1    11111111  111122344556666554322                11


Q ss_pred             EEcCCCCce-EEeCcchhhhcC
Q 045784           67 YLLPFEGYD-VVLDTQWLSTFG   87 (90)
Q Consensus        67 ~v~~~~~~d-vILG~~wL~~~~   87 (90)
                      -+.+..+.+ .|||.+||+.+.
T Consensus       286 ~i~~~~~~~~~ILG~~flr~~y  307 (323)
T d1bxoa_         286 GIQSNSGIGFSIFGDIFLKSQY  307 (323)
T ss_dssp             SEEECTTCSSEEECHHHHTTEE
T ss_pred             EEECCCCCCcEEECHHHhCCEE
Confidence            122333334 689999999864

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=94.47  E-value=0.059  Score=34.46  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=22.1

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .+..++||||++..++.++.++++
T Consensus       207 ~~~~~~iDSGt~~~~lp~~~~~~l  230 (329)
T d2bjua1         207 EKANCIVDSGTSAITVPTDFLNKM  230 (329)
T ss_dssp             EEEEEEECTTCCSEEECHHHHHHH
T ss_pred             cCCcccccccccceeCCHHHHHHH
Confidence            467899999999999999999998

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=94.31  E-value=0.027  Score=36.91  Aligned_cols=23  Identities=30%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcccccHHhhhee
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ...|+||||++..++.++.++++
T Consensus       212 ~~~aiiDSGt~~~~lp~~~~~~l  234 (334)
T d1j71a_         212 NADVVLDSGTTITYFSQSTADKF  234 (334)
T ss_dssp             EEEEEECTTCSSEEECHHHHHHH
T ss_pred             cccccccCCCcceeccHHHHHHH
Confidence            44599999999999999999988

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.44  E-value=0.099  Score=34.55  Aligned_cols=76  Identities=12%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             EEEEEEcCCCCcccccHHhhhee-----eEEecCCCe-eeeec--eeeeeEEEEeceeEEe---e------------EEE
Q 045784           12 VVTVLIDSRRTHNFVRQELAVKL-----NVMVASGER-FSSLG--TCLQTLIKLQGVPLIV---D------------FYL   68 (90)
Q Consensus        12 ~~~aLiDsGA~~~~i~~~~a~~l-----~v~~a~G~~-~~~~~--~~~~~~i~i~~~~~~~---~------------~~v   68 (90)
                      ...|++|||++..++.++.++++     .....+|.. ..|..  ..+++.+.++|..+..   +            |..
T Consensus       253 ~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~~~~~~c~~~~~~  332 (370)
T d3psga_         253 GCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEG  332 (370)
T ss_dssp             CEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECSSCEEESEEE
T ss_pred             CccEEEecCCceEeCCHHHHHHHHHHhCCeeecCCcEEEeccccCCCceEEEEECCEEEEEChHHeEEEcCCeEEEEEEE
Confidence            35789999999999999999998     222223322 22211  2356677777765532   1            122


Q ss_pred             cCC---CCceEEeCcchhhhcC
Q 045784           69 LPF---EGYDVVLDTQWLSTFG   87 (90)
Q Consensus        69 ~~~---~~~dvILG~~wL~~~~   87 (90)
                      ++.   .+.-.|||..||+.+-
T Consensus       333 ~~~~~~~~~~~ILG~~flr~~y  354 (370)
T d3psga_         333 MDVPTSSGELWILGDVFIRQYY  354 (370)
T ss_dssp             ECCCTTSCCEEEECHHHHTTEE
T ss_pred             cccCCCCCCcEEECHHhhcCEE
Confidence            222   1233799999999864

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.078  Score=34.13  Aligned_cols=54  Identities=13%  Similarity=-0.041  Sum_probs=33.3

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee----eEEe-cCCCeeeeec--eeeeeEEEEeceeEEe
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL----NVMV-ASGERFSSLG--TCLQTLIKLQGVPLIV   64 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l----~v~~-a~G~~~~~~~--~~~~~~i~i~~~~~~~   64 (90)
                      ....++||||++..++.++..+++    .... .++-...+..  ..+.+.+.+++..+..
T Consensus       216 ~~~~~iiDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~c~~~~~~P~l~f~f~g~~~~l  276 (337)
T d1hrna_         216 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNEGPTLPDISFHLGGKEYTL  276 (337)
T ss_dssp             TCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSSCEEEETTTGGGCCCEEEEETTEEEEE
T ss_pred             cCcceEEeCCCcceeccHHHHHHHHHHhCCcccccceeeeccccCCCCceeEEECCEEEEE
Confidence            345789999999999999999998    1111 1122222221  2355677777765543

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=93.18  E-value=0.029  Score=36.74  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcccccHHhhhee
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..++||||.+..++.++..+++
T Consensus       228 ~~~ilDSGts~~~lp~~~~~~i  249 (357)
T d1mppa_         228 QAFTIDTGTNFFIAPSSFAEKV  249 (357)
T ss_dssp             EEEEEETTCCSEEEEHHHHHHH
T ss_pred             cceEeeccCccccCCHHHHHHH
Confidence            3479999999999999999888

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=92.99  E-value=0.019  Score=37.34  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcccccHHhhhee
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..+++|||++..++..++.+++
T Consensus       213 ~~~iiDSGt~~~~lp~~~~~~l  234 (325)
T d2apra_         213 FDGILDTGTTLLILPNNIAASV  234 (325)
T ss_dssp             EEEEECTTCSSEEEEHHHHHHH
T ss_pred             eeeeccCCCccccCCHHHHHHH
Confidence            4699999999999999999988

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.99  E-value=0.16  Score=32.21  Aligned_cols=24  Identities=4%  Similarity=0.034  Sum_probs=21.6

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ....++||||.+..++.++..+++
T Consensus       209 ~~~~~iiDSGtt~~~lp~~~~~~l  232 (323)
T d3cmsa_         209 GGCQAILDTGTSKLVGPSSDILNI  232 (323)
T ss_dssp             TCEEEEECTTCCSEEECHHHHHHH
T ss_pred             CCeeEEEecCcceEEecHHHHHHH
Confidence            346799999999999999999988

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=92.98  E-value=0.14  Score=32.72  Aligned_cols=22  Identities=18%  Similarity=0.087  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcccccHHhhhee
Q 045784           13 VTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        13 ~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ..++||||++..++.++..+++
T Consensus       213 ~~~iiDSGts~~~lp~~~~~~l  234 (329)
T d1dpja_         213 HGAAIDTGTSLITLPSGLAEMI  234 (329)
T ss_dssp             CEEEECTTCSCEEECHHHHHHH
T ss_pred             cccccCcccceeeCCHHHHHHH
Confidence            4589999999999999999998

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=92.74  E-value=0.046  Score=35.98  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcccccHHhhhee
Q 045784           14 TVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        14 ~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      .+++|||.+..+..+++++++
T Consensus       231 ~~i~DTGtt~~~lp~~~~~~i  251 (381)
T d1t6ex_         231 GVMLSTRLPYVLLRPDVYRPL  251 (381)
T ss_dssp             CEEECSSCSSEEECHHHHHHH
T ss_pred             ceEEecCCceEECCHHHHHHH
Confidence            379999999999999888877

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=92.66  E-value=0.68  Score=29.23  Aligned_cols=27  Identities=7%  Similarity=-0.021  Sum_probs=22.8

Q ss_pred             EEEEEEECCEEEEEEEcCCCCcccccH
Q 045784            2 IRVIGRLVHKVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         2 ~~v~~~i~~~~~~aLiDsGA~~~~i~~   28 (90)
                      ..++..|++++..+++||||+..++..
T Consensus        17 Y~~~i~vG~~~~~v~~DTGSs~~Wv~~   43 (323)
T d1bxoa_          17 YITPVTIGGTTLNLNFDTGSADLWVFS   43 (323)
T ss_dssp             EEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred             EEEEEEECCccEEEEEECCCcceEEEC
Confidence            357888999999999999999877654

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.24  E-value=0.11  Score=33.52  Aligned_cols=24  Identities=8%  Similarity=0.030  Sum_probs=21.5

Q ss_pred             EEEEEEEcCCCCcccccHHhhhee
Q 045784           11 KVVTVLIDSRRTHNFVRQELAVKL   34 (90)
Q Consensus        11 ~~~~aLiDsGA~~~~i~~~~a~~l   34 (90)
                      ....++||||++..++.++.++++
T Consensus       213 ~~~~~iiDSGtt~~~lp~~~~~~l  236 (335)
T d1smra_         213 EGCEVVVDTGSSFISAPTSSLKLI  236 (335)
T ss_dssp             TCEEEEECTTBSSEEECHHHHHHH
T ss_pred             CCceEEEeCCCCcccCCHHHHHHH
Confidence            346789999999999999999998

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=87.88  E-value=2.1  Score=27.14  Aligned_cols=78  Identities=19%  Similarity=0.220  Sum_probs=43.1

Q ss_pred             EEEEEEC--CEEEEEEEcCCCCcccccH-Hhhhee----------eEEecCCCeeeeeceeeeeEEEEeceeEEe-eEEE
Q 045784            3 RVIGRLV--HKVVTVLIDSRRTHNFVRQ-ELAVKL----------NVMVASGERFSSLGTCLQTLIKLQGVPLIV-DFYL   68 (90)
Q Consensus         3 ~v~~~i~--~~~~~aLiDsGA~~~~i~~-~~a~~l----------~v~~a~G~~~~~~~~~~~~~i~i~~~~~~~-~~~v   68 (90)
                      .+...|.  .++..+++||||+..++.. .+-.+.          .+..+.|+   ..|....=.+.+++..... .|-+
T Consensus        15 ~~~i~iGtP~Q~~~~i~DTGSs~~wv~~~~c~~~sst~~~~~~~~~i~Y~~gs---~~G~~~~D~~~~~~~~~~~~~fg~   91 (340)
T d1wkra_          15 VVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGS---FSGTEYTDTVTLGSLTIPKQSIGV   91 (340)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCCEECSSSCCCCCTTCEEEEEEEEEECSSCE---EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEEEECCCcceEEcCCCCCCCCCCcCCCCCeEEEEeCCeE---EEEEEEEEEEeeCCeeeccEEEEE
Confidence            4566676  4999999999999887732 221111          33444453   2333333345566644332 2322


Q ss_pred             c----CCCCceEEeCcchh
Q 045784           69 L----PFEGYDVVLDTQWL   83 (90)
Q Consensus        69 ~----~~~~~dvILG~~wL   83 (90)
                      .    .....|-|+|+.+.
T Consensus        92 ~~~~~~~~~~~gi~g~g~~  110 (340)
T d1wkra_          92 ASRDSGFDGVDGILGVGPV  110 (340)
T ss_dssp             EEEEESCTTCSEEEECSCG
T ss_pred             EEeccCcccccceeccccc
Confidence            2    34567888887653

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.04  E-value=2.6  Score=27.25  Aligned_cols=28  Identities=14%  Similarity=0.037  Sum_probs=22.8

Q ss_pred             EEEEEEEC--CEEEEEEEcCCCCcccccHH
Q 045784            2 IRVIGRLV--HKVVTVLIDSRRTHNFVRQE   29 (90)
Q Consensus         2 ~~v~~~i~--~~~~~aLiDsGA~~~~i~~~   29 (90)
                      ..++..|.  .++..+++||||+..++..+
T Consensus        58 Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~   87 (370)
T d3psga_          58 YFGTIGIGTPAQDFTVIFDTGSSNLWVPSV   87 (370)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred             EEEEEEEcCCCeEEEEEEeCCCCCeEEECc
Confidence            35677777  59999999999999998544

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=86.36  E-value=0.45  Score=30.18  Aligned_cols=25  Identities=8%  Similarity=-0.025  Sum_probs=21.9

Q ss_pred             EEEEEECCEEEEEEEcCCCCccccc
Q 045784            3 RVIGRLVHKVVTVLIDSRRTHNFVR   27 (90)
Q Consensus         3 ~v~~~i~~~~~~aLiDsGA~~~~i~   27 (90)
                      .++..|+.++..+++||||+..++.
T Consensus        18 ~~~i~iG~q~~~l~~DTGSs~~Wv~   42 (323)
T d1izea_          18 ITQVTVGDDTLGLDFDTGSADLWVF   42 (323)
T ss_dssp             EEEEEETTEEEEEEEETTCCCCEEC
T ss_pred             EEEEEECCeeEEEEEECCCcceEEE
Confidence            4678899999999999999987774

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=84.43  E-value=3.2  Score=25.82  Aligned_cols=26  Identities=12%  Similarity=0.118  Sum_probs=20.8

Q ss_pred             EEEEEECC--EEEEEEEcCCCCcccccH
Q 045784            3 RVIGRLVH--KVVTVLIDSRRTHNFVRQ   28 (90)
Q Consensus         3 ~v~~~i~~--~~~~aLiDsGA~~~~i~~   28 (90)
                      .++..|..  ++..+++||||+..++..
T Consensus        17 ~~~v~iGtP~q~~~~~~DTGS~~~Wv~~   44 (329)
T d2bjua1          17 YGDAEVGDNQQPFTFILDTGSANLWVPS   44 (329)
T ss_dssp             EEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred             EEEEEECCCCEEEEEEEECCCcceEEEC
Confidence            45677764  999999999999887753